Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0533430 | PNY14024.1 | 45.868 | 242 | 131 | 0 | 242 | 483 | 34 | 275 | 1.82e-62 | 221 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0533430 | sp|Q9SKK2|RLP21_ARATH | 39.091 | 110 | 63 | 2 | 4 | 111 | 26 | 133 | 7.65e-16 | 84.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0533430 | A0A2K3PFL6 | 45.868 | 242 | 131 | 0 | 242 | 483 | 34 | 275 | 8.68e-63 | 221 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009610 | Msa0533430 | 0.805949 | 1.042718e-49 | -8.615850e-47 |
| Msa0021460 | Msa0533430 | 0.817060 | 4.010168e-52 | -8.615850e-47 |
| Msa0055690 | Msa0533430 | 0.837290 | 5.672463e-57 | -8.615850e-47 |
| Msa0055730 | Msa0533430 | 0.815120 | 1.088089e-51 | -8.615850e-47 |
| Msa0109970 | Msa0533430 | 0.817912 | 2.577688e-52 | -8.615850e-47 |
| Msa0109990 | Msa0533430 | 0.805641 | 1.210300e-49 | -8.615850e-47 |
| Msa0137330 | Msa0533430 | 0.804782 | 1.831192e-49 | -8.615850e-47 |
| Msa0142230 | Msa0533430 | 0.841660 | 4.154015e-58 | -8.615850e-47 |
| Msa0153200 | Msa0533430 | 0.809930 | 1.483400e-50 | -8.615850e-47 |
| Msa0156170 | Msa0533430 | 0.824762 | 6.769180e-54 | -8.615850e-47 |
| Msa0156190 | Msa0533430 | 0.808381 | 3.185010e-50 | -8.615850e-47 |
| Msa0203070 | Msa0533430 | 0.802417 | 5.666460e-49 | -8.615850e-47 |
| Msa0211680 | Msa0533430 | 0.844894 | 5.699325e-59 | -8.615850e-47 |
| Msa0235190 | Msa0533430 | 0.844624 | 6.735722e-59 | -8.615850e-47 |
| Msa0365810 | Msa0533430 | 0.801127 | 1.042296e-48 | -8.615850e-47 |
| Msa0391050 | Msa0533430 | 0.809815 | 1.570373e-50 | -8.615850e-47 |
| Msa0452410 | Msa0533430 | 0.860631 | 1.805011e-63 | -8.615850e-47 |
| Msa0456200 | Msa0533430 | 0.831538 | 1.577574e-55 | -8.615850e-47 |
| Msa0458700 | Msa0533430 | 0.857273 | 1.826563e-62 | -8.615850e-47 |
| Msa0273570 | Msa0533430 | 0.861674 | 8.693332e-64 | -8.615850e-47 |
| Msa0273580 | Msa0533430 | 0.817195 | 3.740075e-52 | -8.615850e-47 |
| Msa0284810 | Msa0533430 | 0.810724 | 9.998043e-51 | -8.615850e-47 |
| Msa0291600 | Msa0533430 | 0.804219 | 2.399502e-49 | -8.615850e-47 |
| Msa0313780 | Msa0533430 | 0.812505 | 4.099202e-51 | -8.615850e-47 |
| Msa0313920 | Msa0533430 | 0.821568 | 3.767899e-53 | -8.615850e-47 |
| Msa0323550 | Msa0533430 | 0.827035 | 1.953330e-54 | -8.615850e-47 |
| Msa0326200 | Msa0533430 | 0.815449 | 9.191889e-52 | -8.615850e-47 |
| Msa0331430 | Msa0533430 | 0.818038 | 2.413963e-52 | -8.615850e-47 |
| Msa0352000 | Msa0533430 | 0.843289 | 1.535316e-58 | -8.615850e-47 |
| Msa0352010 | Msa0533430 | 0.841361 | 4.979176e-58 | -8.615850e-47 |
| Msa0352280 | Msa0533430 | 0.808246 | 3.403137e-50 | -8.615850e-47 |
| Msa0353190 | Msa0533430 | 0.810812 | 9.570452e-51 | -8.615850e-47 |
| Msa0353690 | Msa0533430 | 0.838570 | 2.659012e-57 | -8.615850e-47 |
| Msa0363980 | Msa0533430 | 0.812331 | 4.473867e-51 | -8.615850e-47 |
| Msa0512420 | Msa0533430 | 0.858656 | 7.092425e-63 | -8.615850e-47 |
| Msa0533290 | Msa0533430 | 0.863225 | 2.896681e-64 | -8.615850e-47 |
| Msa0533430 | Msa0580610 | 0.888441 | 5.890555e-73 | -8.615850e-47 |
| Msa0533430 | Msa0627410 | 0.830869 | 2.303439e-55 | -8.615850e-47 |
| Msa0533430 | Msa0629850 | 0.842969 | 1.868228e-58 | -8.615850e-47 |
| Msa0533430 | Msa0629880 | 0.828772 | 7.465782e-55 | -8.615850e-47 |
| Msa0533430 | Msa0629930 | 0.839054 | 1.992711e-57 | -8.615850e-47 |
| Msa0533430 | Msa0629940 | 0.834951 | 2.227470e-56 | -8.615850e-47 |
| Msa0533430 | Msa0661870 | 0.803051 | 4.191924e-49 | -8.615850e-47 |
| Msa0533430 | Msa0754180 | 0.860773 | 1.635176e-63 | -8.615850e-47 |
| Msa0533430 | Msa0774590 | 0.800745 | 1.247847e-48 | -8.615850e-47 |
| Msa0533430 | Msa0782080 | 0.813537 | 2.434434e-51 | -8.615850e-47 |
| Msa0533430 | Msa0784580 | 0.860905 | 1.490312e-63 | -8.615850e-47 |
| Msa0533430 | Msa0784660 | 0.804267 | 2.344460e-49 | -8.615850e-47 |
| Msa0533430 | Msa0808180 | 0.819535 | 1.103585e-52 | -8.615850e-47 |
| Msa0533430 | Msa0815320 | 0.859478 | 4.023481e-63 | -8.615850e-47 |
| Msa0533430 | Msa0818010 | 0.923564 | 2.249523e-89 | -8.615850e-47 |
| Msa0533430 | Msa0818030 | 0.848510 | 5.853512e-60 | -8.615850e-47 |
| Msa0533430 | Msa0858360 | 0.868357 | 6.935871e-66 | -8.615850e-47 |
| Msa0533430 | Msa0865390 | 0.821784 | 3.358530e-53 | -8.615850e-47 |
| Msa0533430 | Msa0883370 | 0.827013 | 1.977441e-54 | -8.615850e-47 |
| Msa0533430 | Msa0884920 | 0.869269 | 3.514708e-66 | -8.615850e-47 |
| Msa0533430 | Msa0884980 | 0.829792 | 4.221456e-55 | -8.615850e-47 |
| Msa0533430 | Msa0897950 | 0.843406 | 1.428703e-58 | -8.615850e-47 |
| Msa0533430 | Msa0898360 | 0.814418 | 1.556584e-51 | -8.615850e-47 |
| Msa0533430 | Msa0898370 | 0.804598 | 2.000784e-49 | -8.615850e-47 |
| Msa0533430 | Msa0898390 | 0.816432 | 5.546058e-52 | -8.615850e-47 |
| Msa0533430 | Msa0902020 | 0.846856 | 1.669561e-59 | -8.615850e-47 |
| Msa0533430 | Msa0912370 | 0.831088 | 2.035068e-55 | -8.615850e-47 |
| Msa0533430 | Msa0912500 | 0.861768 | 8.135371e-64 | -8.615850e-47 |
| Msa0533430 | Msa0924370 | 0.840480 | 8.478815e-58 | -8.615850e-47 |
| Msa0533430 | Msa0940090 | 0.851445 | 8.832668e-61 | -8.615850e-47 |
| Msa0533430 | Msa0963310 | 0.850143 | 2.054125e-60 | -8.615850e-47 |
| Msa0533430 | Msa0965750 | 0.854984 | 8.549869e-62 | -8.615850e-47 |
| Msa0533430 | Msa1002320 | 0.809859 | 1.536352e-50 | -8.615850e-47 |
| Msa0533430 | Msa1006250 | 0.898629 | 4.401055e-77 | -8.615850e-47 |
| Msa0533430 | Msa1006270 | 0.811084 | 8.354006e-51 | -8.615850e-47 |
| Msa0533430 | Msa1006360 | 0.835805 | 1.355194e-56 | -8.615850e-47 |
| Msa0533430 | Msa1006390 | 0.838071 | 3.575646e-57 | -8.615850e-47 |
| Msa0533430 | Msa1006400 | 0.808146 | 3.574361e-50 | -8.615850e-47 |
| Msa0533430 | Msa1006540 | 0.809662 | 1.694108e-50 | -8.615850e-47 |
| Msa0533430 | Msa1006620 | 0.805202 | 1.496094e-49 | -8.615850e-47 |
| Msa0533430 | Msa1025790 | 0.812518 | 4.072968e-51 | -8.615850e-47 |
| Msa0533430 | Msa1027240 | 0.855712 | 5.248342e-62 | -8.615850e-47 |
| Msa0533430 | Msa1048110 | 0.801907 | 7.214929e-49 | -8.615850e-47 |
| Msa0533430 | Msa1048490 | 0.839224 | 1.801239e-57 | -8.615850e-47 |
| Msa0533430 | Msa1048550 | 0.810552 | 1.089196e-50 | -8.615850e-47 |
| Msa0533430 | Msa1048610 | 0.814411 | 1.562057e-51 | -8.615850e-47 |
| Msa0533430 | Msa1100180 | 0.828239 | 1.003925e-54 | -8.615850e-47 |
| Msa0533430 | Msa1131820 | 0.819919 | 9.020279e-53 | -8.615850e-47 |
| Msa0533430 | Msa1160280 | 0.813939 | 1.985809e-51 | -8.615850e-47 |
| Msa0533430 | Msa1182730 | 0.805973 | 1.030736e-49 | -8.615850e-47 |
| Msa0533430 | Msa1187060 | 0.818724 | 1.688285e-52 | -8.615850e-47 |
| Msa0533430 | Msa1198090 | 0.849989 | 2.268412e-60 | -8.615850e-47 |
| Msa0533430 | Msa1232060 | 0.820642 | 6.158311e-53 | -8.615850e-47 |
| Msa0533430 | Msa1232160 | 0.804865 | 1.759537e-49 | -8.615850e-47 |
| Msa0533430 | Msa1287560 | 0.813979 | 1.945469e-51 | -8.615850e-47 |
| Msa0533430 | Msa1288000 | 0.852848 | 3.525095e-61 | -8.615850e-47 |
| Msa0533430 | Msa1289540 | 0.807068 | 6.053903e-50 | -8.615850e-47 |
| Msa0533430 | Msa1347360 | 0.807490 | 4.927722e-50 | -8.615850e-47 |
| Msa0533430 | Msa1349090 | 0.817547 | 3.116290e-52 | -8.615850e-47 |
| Msa0533430 | Msa1351080 | 0.814773 | 1.298482e-51 | -8.615850e-47 |
| Msa0533430 | Msa1359820 | 0.861178 | 1.231620e-63 | -8.615850e-47 |
| Msa0533430 | Msa1406600 | 0.800766 | 1.235740e-48 | -8.615850e-47 |
| Msa0533430 | Msa1409770 | 0.803883 | 2.818721e-49 | -8.615850e-47 |
| Msa0533430 | Msa1423990 | 0.853807 | 1.871209e-61 | -8.615850e-47 |
| Msa0533430 | Msa1444370 | 0.891639 | 3.305823e-74 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0533430 | MtrunA17_Chr4g0006881 | 72.414 | 116 | 20 | 2 | 4 | 107 | 22 | 137 | 3.63e-48 | 164 |
| Msa0533430 | MtrunA17_Chr4g0006911 | 71.930 | 114 | 20 | 2 | 1 | 107 | 19 | 127 | 3.06e-47 | 160 |
| Msa0533430 | MtrunA17_Chr4g0006951 | 70.370 | 108 | 26 | 3 | 4 | 107 | 22 | 127 | 7.45e-43 | 152 |
| Msa0533430 | MtrunA17_Chr4g0006861 | 69.912 | 113 | 28 | 1 | 1 | 107 | 19 | 131 | 8.41e-42 | 160 |
| Msa0533430 | MtrunA17_Chr4g0006421 | 69.565 | 115 | 23 | 2 | 1 | 108 | 19 | 128 | 1.32e-40 | 156 |
| Msa0533430 | MtrunA17_Chr5g0408761 | 51.786 | 112 | 54 | 0 | 104 | 215 | 1 | 112 | 2.29e-39 | 143 |
| Msa0533430 | MtrunA17_Chr1g0186961 | 51.724 | 145 | 63 | 3 | 242 | 379 | 137 | 281 | 2.69e-37 | 139 |
| Msa0533430 | MtrunA17_Chr4g0006941 | 68.182 | 110 | 30 | 2 | 1 | 107 | 31 | 138 | 3.32e-37 | 146 |
| Msa0533430 | MtrunA17_Chr1g0162521 | 30.566 | 265 | 176 | 4 | 220 | 482 | 88 | 346 | 4.31e-26 | 111 |
| Msa0533430 | MtrunA17_Chr7g0237361 | 30.279 | 251 | 144 | 7 | 246 | 482 | 32 | 265 | 6.67e-26 | 107 |
| Msa0533430 | MtrunA17_Chr3g0079981 | 53.846 | 78 | 36 | 0 | 138 | 215 | 100 | 177 | 1.02e-24 | 101 |
| Msa0533430 | MtrunA17_Chr4g0006871 | 30.612 | 245 | 150 | 5 | 243 | 475 | 130 | 366 | 7.39e-22 | 99.8 |
| Msa0533430 | MtrunA17_Chr8g0372861 | 45.545 | 101 | 49 | 3 | 8 | 104 | 27 | 125 | 1.62e-17 | 85.9 |
| Msa0533430 | MtrunA17_Chr2g0283921 | 45.545 | 101 | 48 | 4 | 8 | 104 | 29 | 126 | 1.29e-16 | 83.2 |
| Msa0533430 | MtrunA17_Chr4g0023831 | 31.102 | 254 | 145 | 10 | 245 | 482 | 704 | 943 | 3.74e-16 | 82.0 |
| Msa0533430 | MtrunA17_Chr3g0087681 | 25.909 | 220 | 154 | 5 | 245 | 461 | 132 | 345 | 3.72e-15 | 77.0 |
| Msa0533430 | MtrunA17_Chr8g0359381 | 28.295 | 258 | 153 | 9 | 242 | 482 | 43 | 285 | 1.65e-11 | 67.0 |
| Msa0533430 | MtrunA17_Chr5g0408771 | 45.902 | 61 | 33 | 0 | 423 | 483 | 3 | 63 | 3.51e-11 | 65.1 |
| Msa0533430 | MtrunA17_Chr7g0228731 | 27.742 | 155 | 104 | 5 | 329 | 482 | 9 | 156 | 6.89e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0533430 | AT2G25470.2 | 39.091 | 110 | 63 | 2 | 4 | 111 | 26 | 133 | 6.28e-17 | 84.7 |
| Msa0533430 | AT2G25470.3 | 39.091 | 110 | 63 | 2 | 4 | 111 | 26 | 133 | 7.77e-17 | 84.3 |
| Msa0533430 | AT2G25470.1 | 39.091 | 110 | 63 | 2 | 4 | 111 | 8 | 115 | 7.95e-17 | 84.3 |
| Msa0533430 | AT5G49290.1 | 38.889 | 126 | 68 | 4 | 4 | 127 | 8 | 126 | 4.23e-15 | 79.0 |
| Msa0533430 | AT5G49290.2 | 38.889 | 126 | 68 | 4 | 4 | 127 | 22 | 140 | 4.62e-15 | 79.0 |
| Msa0533430 | AT5G49290.3 | 38.889 | 126 | 68 | 4 | 4 | 127 | 22 | 140 | 5.17e-15 | 78.6 |
| Msa0533430 | AT5G49290.4 | 38.889 | 126 | 68 | 4 | 4 | 127 | 8 | 126 | 5.19e-15 | 78.6 |
| Msa0533430 | AT5G49290.6 | 38.889 | 126 | 68 | 4 | 4 | 127 | 8 | 126 | 5.19e-15 | 78.6 |
| Msa0533430 | AT5G49290.8 | 38.889 | 126 | 68 | 4 | 4 | 127 | 8 | 126 | 5.19e-15 | 78.6 |
| Msa0533430 | AT1G58190.2 | 42.727 | 110 | 47 | 5 | 4 | 111 | 23 | 118 | 1.65e-13 | 73.9 |
| Msa0533430 | AT1G58190.1 | 42.727 | 110 | 47 | 5 | 4 | 111 | 23 | 118 | 1.73e-13 | 73.9 |
| Msa0533430 | AT3G53240.2 | 40.566 | 106 | 52 | 5 | 4 | 103 | 1 | 101 | 4.51e-13 | 72.4 |
| Msa0533430 | AT1G54470.1 | 33.913 | 115 | 65 | 5 | 6 | 115 | 123 | 231 | 4.84e-12 | 68.6 |
| Msa0533430 | AT1G74180.2 | 40.476 | 126 | 69 | 3 | 4 | 127 | 8 | 129 | 1.56e-11 | 67.4 |
| Msa0533430 | AT1G74180.1 | 40.476 | 126 | 69 | 3 | 4 | 127 | 22 | 143 | 1.72e-11 | 67.4 |
Find 129 sgRNAs with CRISPR-Local
Find 375 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAGGATATTTCCCCATATT+TGG | 0.163269 | 4_1:-8350956 | None:intergenic |
| TTCCTTTGTGGATTCAGTTC+TGG | 0.176048 | 4_1:+8348662 | Msa0533430:CDS |
| CATCTCCTTCCCCATTATTA+TGG | 0.183919 | 4_1:-8348707 | None:intergenic |
| TCATGAAATTCTAGCATAAT+AGG | 0.202036 | 4_1:-8350760 | None:intergenic |
| GATTTCATGCATCATCTAAT+TGG | 0.205068 | 4_1:+8350677 | Msa0533430:CDS |
| TCACTGTAAATCCATAATAA+TGG | 0.262458 | 4_1:+8348696 | Msa0533430:CDS |
| GAGATAGCAATTGTTGTTCT+TGG | 0.265382 | 4_1:+8347411 | Msa0533430:CDS |
| CACTGTAAATCCATAATAAT+GGG | 0.276019 | 4_1:+8348697 | Msa0533430:CDS |
| CATATGTGCTCAAATCTTAA+AGG | 0.277699 | 4_1:-8350820 | None:intergenic |
| GCTCAGTTGCCTTGATTTGT+AGG | 0.280741 | 4_1:-8351044 | None:intergenic |
| GAGTGGGGCAAATCCAAATA+TGG | 0.292621 | 4_1:+8350943 | Msa0533430:CDS |
| TCCTTTGTGGATTCAGTTCT+GGG | 0.295493 | 4_1:+8348663 | Msa0533430:CDS |
| AAGGCAACTGAGCAGATCTT+AGG | 0.296381 | 4_1:+8351054 | Msa0533430:CDS |
| GAGAGAGTCAAGTGCTCTTC+TGG | 0.304780 | 4_1:+8347434 | Msa0533430:CDS |
| ATTTCTCTCATGTTCCTTTG+TGG | 0.315688 | 4_1:+8348650 | Msa0533430:CDS |
| CACAGCATACAGGACTAAAA+TGG | 0.326549 | 4_1:+8351203 | Msa0533430:CDS |
| CTTTAAGATTTGAGCACATA+TGG | 0.330013 | 4_1:+8350821 | Msa0533430:CDS |
| CACAATAGCCAAGATCATTA+AGG | 0.344681 | 4_1:-8350591 | None:intergenic |
| ATGAGAGAAATCAAGGGATT+TGG | 0.371467 | 4_1:-8348638 | None:intergenic |
| TCTTGTGGCCTTAATGATCT+TGG | 0.378551 | 4_1:+8350583 | Msa0533430:CDS |
| TTCAAATTGTTAAGAAAGCT+TGG | 0.382429 | 4_1:+8350863 | Msa0533430:CDS |
| TGATCCAGAGGCTACTCTTT+AGG | 0.382974 | 4_1:-8348567 | None:intergenic |
| TTGTGTCTTCCTTGTCCACT+TGG | 0.384861 | 4_1:-8349263 | None:intergenic |
| CATTAAGGCCACAAGAGTTA+AGG | 0.385440 | 4_1:-8350576 | None:intergenic |
| TTGTTGTACTTTGATCTTGT+AGG | 0.391505 | 4_1:-8350974 | None:intergenic |
| AGATAGCAATTGTTGTTCTT+GGG | 0.394944 | 4_1:+8347412 | Msa0533430:CDS |
| TCCTTGACTTGTCTGCCAAC+AGG | 0.395246 | 4_1:+8347555 | Msa0533430:CDS |
| GAAAGAGAGAATAGGGCTGT+TGG | 0.397530 | 4_1:+8347313 | Msa0533430:CDS |
| GTTGGCTGCTTCTACACCCC+TGG | 0.399901 | 4_1:+8348599 | Msa0533430:CDS |
| GCTTAGAGAAAGAGAGAATA+GGG | 0.413364 | 4_1:+8347306 | Msa0533430:CDS |
| TTGTCTGCCAACAGGTTTCA+AGG | 0.414629 | 4_1:+8347563 | Msa0533430:CDS |
| CTGCCAACAGGTTTCAAGGC+TGG | 0.415719 | 4_1:+8347567 | Msa0533430:CDS |
| AGAGTAGCCTCTGGATCATC+AGG | 0.416688 | 4_1:+8348572 | Msa0533430:CDS |
| ATGCTAGAATTTCATGAAGA+TGG | 0.420083 | 4_1:+8350766 | Msa0533430:CDS |
| CATGAAATTCTAGCATAATA+GGG | 0.425070 | 4_1:-8350759 | None:intergenic |
| TAACAATTTGAATAATGTCT+TGG | 0.427441 | 4_1:-8350852 | None:intergenic |
| AGGCAACTGAGCAGATCTTA+GGG | 0.429706 | 4_1:+8351055 | Msa0533430:CDS |
| CCTCCTAGAGAATTTAAAAC+AGG | 0.430176 | 4_1:+8350999 | Msa0533430:CDS |
| ACATTTAACATAGTAGGATC+AGG | 0.434010 | 4_1:-8347500 | None:intergenic |
| GGCTTAATTCTCTTAGTGTA+AGG | 0.437843 | 4_1:-8350799 | None:intergenic |
| GGTGTCTACATTCCTGTCCC+AGG | 0.438105 | 4_1:-8348617 | None:intergenic |
| TGTAGGAGACAATTCTGATT+GGG | 0.443520 | 4_1:-8351027 | None:intergenic |
| CATAATAATGGGGAAGGAGA+TGG | 0.446728 | 4_1:+8348708 | Msa0533430:CDS |
| GTGTCTACATTCCTGTCCCA+GGG | 0.448404 | 4_1:-8348616 | None:intergenic |
| AAAGTAGTCTTAAGCTTCAT+CGG | 0.453558 | 4_1:-8350907 | None:intergenic |
| TGCTTCTACACCCCTGGGAC+AGG | 0.463659 | 4_1:+8348605 | Msa0533430:CDS |
| ACCAAGTTTCTTCCTTCTTG+AGG | 0.464405 | 4_1:-8351083 | None:intergenic |
| AATGAAACATTTAACATAGT+AGG | 0.475512 | 4_1:-8347506 | None:intergenic |
| TTTAAGATTTGAGCACATAT+GGG | 0.478492 | 4_1:+8350822 | Msa0533430:CDS |
| ATTAAGGCCACAAGAGTTAA+GGG | 0.479249 | 4_1:-8350575 | None:intergenic |
| AGTGGGGCAAATCCAAATAT+GGG | 0.481847 | 4_1:+8350944 | Msa0533430:CDS |
| AAGGAACATGAGAGAAATCA+AGG | 0.485972 | 4_1:-8348645 | None:intergenic |
| TATTATGGATTTACAGTGAA+GGG | 0.486323 | 4_1:-8348692 | None:intergenic |
| TTGTAGGAGACAATTCTGAT+TGG | 0.486641 | 4_1:-8351028 | None:intergenic |
| AATACATATAAAAGAAAGGT+TGG | 0.492176 | 4_1:+8350651 | Msa0533430:CDS |
| AAGTAGTCTTAAGCTTCATC+GGG | 0.497515 | 4_1:-8350906 | None:intergenic |
| GGAAGACACAATACTACTCT+TGG | 0.498233 | 4_1:+8349275 | Msa0533430:CDS |
| AACAGGTTTCAAGGCTGGAT+TGG | 0.500082 | 4_1:+8347572 | Msa0533430:CDS |
| GGAGGCAGCCCAAGTGGACA+AGG | 0.501671 | 4_1:+8349254 | Msa0533430:CDS |
| CTCATATAGTAAACTCTGGA+TGG | 0.506220 | 4_1:-8347474 | None:intergenic |
| GAGTCCTAAAGAGTAGCCTC+TGG | 0.506687 | 4_1:+8348563 | Msa0533430:CDS |
| AGGAGGCGTAGCTCTTCAAA+TGG | 0.509126 | 4_1:-8347536 | None:intergenic |
| CTTAATGATCTTGGCTATTG+TGG | 0.510455 | 4_1:+8350592 | Msa0533430:CDS |
| TGCTTAGAGAAAGAGAGAAT+AGG | 0.512544 | 4_1:+8347305 | Msa0533430:CDS |
| AAAGAGATAGTCAAAGAAAG+AGG | 0.512821 | 4_1:+8351169 | Msa0533430:CDS |
| CTGGTTGCCAATGTACATTC+CGG | 0.513132 | 4_1:-8348836 | None:intergenic |
| ATAAAATACATATAAAAGAA+AGG | 0.513149 | 4_1:+8350647 | Msa0533430:CDS |
| ATGTACATTCCGGCTCTGAT+TGG | 0.515019 | 4_1:-8348826 | None:intergenic |
| AATAACACCCTTAACTCTTG+TGG | 0.517847 | 4_1:+8350568 | Msa0533430:CDS |
| GAATTGTCTCCTACAAATCA+AGG | 0.518422 | 4_1:+8351035 | Msa0533430:CDS |
| ACCTGTTGGCAGACAAGTCA+AGG | 0.527764 | 4_1:-8347556 | None:intergenic |
| TGTGTCTTCCTTGTCCACTT+GGG | 0.532124 | 4_1:-8349262 | None:intergenic |
| TTGGCTGCTTCTACACCCCT+GGG | 0.532665 | 4_1:+8348600 | Msa0533430:CDS |
| AGCATGGAGATCAAAATACT+AGG | 0.533318 | 4_1:+8351136 | Msa0533430:CDS |
| TCCTCAAGAAGGAAGAAACT+TGG | 0.534029 | 4_1:+8351082 | Msa0533430:CDS |
| GTCTTAAGCTTCATCGGGCT+AGG | 0.535898 | 4_1:-8350901 | None:intergenic |
| ATCACCAAGCCAATCAGAGC+CGG | 0.538905 | 4_1:+8348817 | Msa0533430:CDS |
| TCTGGATCATCAGGAACTGT+TGG | 0.539417 | 4_1:+8348581 | Msa0533430:CDS |
| TCCAAGTAATACCATCCTGC+TGG | 0.547661 | 4_1:-8348855 | None:intergenic |
| AATGTACATTGGCAACCAGC+AGG | 0.548566 | 4_1:+8348840 | Msa0533430:CDS |
| ATCTCCATGCTGAAGCCAGT+GGG | 0.548774 | 4_1:-8351124 | None:intergenic |
| AAGGAGATGGGTGAACAGCT+AGG | 0.549671 | 4_1:+8348721 | Msa0533430:CDS |
| ATAATAATGGGGAAGGAGAT+GGG | 0.550368 | 4_1:+8348709 | Msa0533430:CDS |
| TCAAGAAGGAAGAAACTTGG+TGG | 0.552843 | 4_1:+8351085 | Msa0533430:CDS |
| AGATACAATACACAGCATAC+AGG | 0.555817 | 4_1:+8351193 | Msa0533430:CDS |
| GCTAGGAACAGTGTTGGATG+TGG | 0.556429 | 4_1:+8348738 | Msa0533430:CDS |
| CTCAAAGAGCAAAATCCCAC+TGG | 0.558706 | 4_1:+8351109 | Msa0533430:CDS |
| ATTGTGGAAATAAATTCACT+TGG | 0.559426 | 4_1:+8350608 | Msa0533430:CDS |
| CATTCCGGCTCTGATTGGCT+TGG | 0.560044 | 4_1:-8348821 | None:intergenic |
| TAAATCCATAATAATGGGGA+AGG | 0.565688 | 4_1:+8348702 | Msa0533430:CDS |
| GATCTCCATGCTGAAGCCAG+TGG | 0.567625 | 4_1:-8351125 | None:intergenic |
| CATTTAACATAGTAGGATCA+GGG | 0.572595 | 4_1:-8347499 | None:intergenic |
| CCTTTGTGGATTCAGTTCTG+GGG | 0.573936 | 4_1:+8348664 | Msa0533430:CDS |
| GTGCTCTTCTGGTCACATAA+CGG | 0.578122 | 4_1:+8347445 | Msa0533430:CDS |
| ATCAGAGCCGGAATGTACAT+TGG | 0.585040 | 4_1:+8348829 | Msa0533430:CDS |
| GGGTCTCATATAGTAAACTC+TGG | 0.585480 | 4_1:-8347478 | None:intergenic |
| CTTAGGGGATCTCCTCAAGA+AGG | 0.589137 | 4_1:+8351071 | Msa0533430:CDS |
| GGCGTAGCTCTTCAAATGGA+CGG | 0.592271 | 4_1:-8347532 | None:intergenic |
| TCAGCAGAGATAACTCTAAG+TGG | 0.595273 | 4_1:+8350458 | Msa0533430:intron |
| AATCCAGCCTTGAAACCTGT+TGG | 0.595377 | 4_1:-8347570 | None:intergenic |
| ATGGGAAAACAAGGATGTAA+CGG | 0.596842 | 4_1:+8347281 | Msa0533430:CDS |
| TTGTGGAAATAAATTCACTT+GGG | 0.596868 | 4_1:+8350609 | Msa0533430:CDS |
| ATTCTAGCATAATAGGGCAG+TGG | 0.600409 | 4_1:-8350753 | None:intergenic |
| TTTGAACAGGTGGCTGAGTG+GGG | 0.602520 | 4_1:+8350928 | Msa0533430:CDS |
| AGGACTAAAATGGAAATACA+TGG | 0.603886 | 4_1:+8351213 | Msa0533430:CDS |
| CAAGAAGGAAGAAACTTGGT+GGG | 0.611019 | 4_1:+8351086 | Msa0533430:CDS |
| AAAGCTTGGCTTAATAGTGA+AGG | 0.612057 | 4_1:+8350877 | Msa0533430:CDS |
| AAATCCCACTGGCTTCAGCA+TGG | 0.615089 | 4_1:+8351120 | Msa0533430:CDS |
| TACATTGGCAACCAGCAGGA+TGG | 0.619767 | 4_1:+8348844 | Msa0533430:CDS |
| TTATTATGGATTTACAGTGA+AGG | 0.620133 | 4_1:-8348693 | None:intergenic |
| CAAGGCTGGATTGGCAACCA+AGG | 0.621338 | 4_1:+8347581 | Msa0533430:CDS |
| CTAGGAACAGTGTTGGATGT+GGG | 0.627686 | 4_1:+8348739 | Msa0533430:CDS |
| CTAAAATGGAAATACATGGA+AGG | 0.628977 | 4_1:+8351217 | Msa0533430:CDS |
| ATTATGGATTTACAGTGAAG+GGG | 0.630428 | 4_1:-8348691 | None:intergenic |
| AAACAAGGAGGCAGCCCAAG+TGG | 0.634976 | 4_1:+8349248 | Msa0533430:CDS |
| ACTGTAAATCCATAATAATG+GGG | 0.640802 | 4_1:+8348698 | Msa0533430:CDS |
| GACATGAGTATTCATAAACA+AGG | 0.641275 | 4_1:+8349233 | Msa0533430:intron |
| AACAGTTCCTGATGATCCAG+AGG | 0.642924 | 4_1:-8348579 | None:intergenic |
| TGAACAGCTAGGAACAGTGT+TGG | 0.643407 | 4_1:+8348732 | Msa0533430:CDS |
| TTGATGTTAATGGGAAAACA+AGG | 0.645792 | 4_1:+8347272 | None:intergenic |
| GGCAACTGAGCAGATCTTAG+GGG | 0.651615 | 4_1:+8351056 | Msa0533430:CDS |
| AGGAACATGAGAGAAATCAA+GGG | 0.655727 | 4_1:-8348644 | None:intergenic |
| GTGGGGCAAATCCAAATATG+GGG | 0.659339 | 4_1:+8350945 | Msa0533430:CDS |
| ATTTAACATAGTAGGATCAG+GGG | 0.675247 | 4_1:-8347498 | None:intergenic |
| TGTCTACATTCCTGTCCCAG+GGG | 0.681592 | 4_1:-8348615 | None:intergenic |
| CCCCAGAACTGAATCCACAA+AGG | 0.705140 | 4_1:-8348664 | None:intergenic |
| ATGAGTATTCATAAACAAGG+AGG | 0.710273 | 4_1:+8349236 | Msa0533430:CDS |
| CTCTTGGTAAATCCCCACCA+TGG | 0.731199 | 4_1:+8349291 | Msa0533430:CDS |
| TGTTGGCAGACAAGTCAAGG+AGG | 0.768164 | 4_1:-8347553 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAGAAATCTTATATATA+AGG | - | chr4_1:8347619-8347638 | None:intergenic | 10.0% |
| !!! | TTTTAATAATATGCAAAAAT+AGG | - | chr4_1:8349933-8349952 | None:intergenic | 10.0% |
| !!! | CTTAAAAGTTAAATATTTTT+TGG | - | chr4_1:8350421-8350440 | None:intergenic | 10.0% |
| !!! | CAAAAAATATTTAACTTTTA+AGG | + | chr4_1:8350419-8350438 | Msa0533430:intron | 10.0% |
| !! | ATAAAATACATATAAAAGAA+AGG | + | chr4_1:8350647-8350666 | Msa0533430:CDS | 10.0% |
| !!! | AATAACATCATTTATCTTTT+TGG | + | chr4_1:8347362-8347381 | Msa0533430:CDS | 15.0% |
| !! | CATAATTAGTAAAAATTGAT+CGG | + | chr4_1:8347720-8347739 | Msa0533430:intron | 15.0% |
| !! | AATGTTTAAATCTCAATTAA+GGG | + | chr4_1:8347793-8347812 | Msa0533430:intron | 15.0% |
| !!! | AATTTTATCTACTTGTAAAT+AGG | - | chr4_1:8350100-8350119 | None:intergenic | 15.0% |
| !!! | TAATTACTTTAATTTGAAGT+AGG | + | chr4_1:8350127-8350146 | Msa0533430:intron | 15.0% |
| !!! | TTTGAAATCTAATAAAATGA+TGG | + | chr4_1:8350322-8350341 | Msa0533430:intron | 15.0% |
| !!! | TCTTTTATATGTATTTTATC+AGG | - | chr4_1:8350646-8350665 | None:intergenic | 15.0% |
| !! | AATGAAACATTTAACATAGT+AGG | - | chr4_1:8347509-8347528 | None:intergenic | 20.0% |
| !! | TTTATACAGATTACAAAAGT+TGG | + | chr4_1:8347643-8347662 | Msa0533430:intron | 20.0% |
| !! | CAATGTTTAAATCTCAATTA+AGG | + | chr4_1:8347792-8347811 | Msa0533430:intron | 20.0% |
| !! | AGACTAATTTGATATATACT+TGG | - | chr4_1:8347900-8347919 | None:intergenic | 20.0% |
| !!! | TTTTTTACGATGAAGAAAAA+AGG | + | chr4_1:8348023-8348042 | Msa0533430:intron | 20.0% |
| !! | GAAGAAAATTCAAATTCATA+TGG | + | chr4_1:8348519-8348538 | Msa0533430:intron | 20.0% |
| !! | ATAAGCCTATTTAAGTAAAT+AGG | + | chr4_1:8349861-8349880 | Msa0533430:intron | 20.0% |
| !! | TCAAGAAAAAACTCAAATAA+TGG | + | chr4_1:8349999-8350018 | Msa0533430:intron | 20.0% |
| !!! | AAATAATGGACTTTTTGAAT+AGG | + | chr4_1:8350013-8350032 | Msa0533430:intron | 20.0% |
| !!! | TTATATGTATTTTATCAGGT+TGG | - | chr4_1:8350642-8350661 | None:intergenic | 20.0% |
| !! | AATACATATAAAAGAAAGGT+TGG | + | chr4_1:8350651-8350670 | Msa0533430:CDS | 20.0% |
| !! | TAACAATTTGAATAATGTCT+TGG | - | chr4_1:8350855-8350874 | None:intergenic | 20.0% |
| !!! | CATTTATCTTTTTGGAGAAT+TGG | + | chr4_1:8347370-8347389 | Msa0533430:CDS | 25.0% |
| ! | AATCTTATATATAAGGACCA+AGG | - | chr4_1:8347612-8347631 | None:intergenic | 25.0% |
| !!! | GTTAAGTTTGATTGATTTGT+GGG | + | chr4_1:8347665-8347684 | Msa0533430:intron | 25.0% |
| !!! | TTAAGTTTGATTGATTTGTG+GGG | + | chr4_1:8347666-8347685 | Msa0533430:intron | 25.0% |
| !!! | ATTAGTCTTACTAGATTTGA+TGG | + | chr4_1:8347912-8347931 | Msa0533430:intron | 25.0% |
| !!! | TTAGTCTTACTAGATTTGAT+GGG | + | chr4_1:8347913-8347932 | Msa0533430:intron | 25.0% |
| ! | TACAACACTTATGTTTGTAT+TGG | - | chr4_1:8347956-8347975 | None:intergenic | 25.0% |
| !! | CAAACATAAGTGTTGTAAAT+AGG | + | chr4_1:8347959-8347978 | Msa0533430:intron | 25.0% |
| ! | AGAAAATATCAGAGCAAAAA+AGG | - | chr4_1:8348242-8348261 | None:intergenic | 25.0% |
| !!! | CTCTAATCTTTCTTCTTTTT+TGG | + | chr4_1:8348275-8348294 | Msa0533430:intron | 25.0% |
| !! | ATCATCTTTAGAAAGATTCA+TGG | - | chr4_1:8348349-8348368 | None:intergenic | 25.0% |
| ! | TATTATGGATTTACAGTGAA+GGG | - | chr4_1:8348695-8348714 | None:intergenic | 25.0% |
| ! | TTATTATGGATTTACAGTGA+AGG | - | chr4_1:8348696-8348715 | None:intergenic | 25.0% |
| ! | TCACTGTAAATCCATAATAA+TGG | + | chr4_1:8348696-8348715 | Msa0533430:CDS | 25.0% |
| ! | CACTGTAAATCCATAATAAT+GGG | + | chr4_1:8348697-8348716 | Msa0533430:CDS | 25.0% |
| ! | ACTGTAAATCCATAATAATG+GGG | + | chr4_1:8348698-8348717 | Msa0533430:CDS | 25.0% |
| !!! | TTAATAGTTTTAGCACTTTC+TGG | - | chr4_1:8348778-8348797 | None:intergenic | 25.0% |
| ! | ACAATATGAAAATTTGAGAG+AGG | - | chr4_1:8349684-8349703 | None:intergenic | 25.0% |
| !! | GTTGATTGTAACATTTTCAA+AGG | + | chr4_1:8349702-8349721 | Msa0533430:intron | 25.0% |
| ! | AATAATATGCAAAAATAGGC+CGG | - | chr4_1:8349929-8349948 | None:intergenic | 25.0% |
| ! | CTTGTAATCATAATATGTCT+TGG | + | chr4_1:8350363-8350382 | Msa0533430:intron | 25.0% |
| !!! | CTTAATAGCTCTGAAAAAAT+TGG | + | chr4_1:8350508-8350527 | Msa0533430:CDS | 25.0% |
| ! | ATTGTGGAAATAAATTCACT+TGG | + | chr4_1:8350608-8350627 | Msa0533430:CDS | 25.0% |
| ! | TTGTGGAAATAAATTCACTT+GGG | + | chr4_1:8350609-8350628 | Msa0533430:CDS | 25.0% |
| ! | CATGAAATTCTAGCATAATA+GGG | - | chr4_1:8350762-8350781 | None:intergenic | 25.0% |
| ! | TCATGAAATTCTAGCATAAT+AGG | - | chr4_1:8350763-8350782 | None:intergenic | 25.0% |
| !! | TTTAAGATTTGAGCACATAT+GGG | + | chr4_1:8350822-8350841 | Msa0533430:CDS | 25.0% |
| ! | TTCAAATTGTTAAGAAAGCT+TGG | + | chr4_1:8350863-8350882 | Msa0533430:CDS | 25.0% |
| !! | TTTTTGGAGAATTGGATTCA+TGG | + | chr4_1:8347378-8347397 | Msa0533430:CDS | 30.0% |
| !! | TTTTGGAGAATTGGATTCAT+GGG | + | chr4_1:8347379-8347398 | Msa0533430:CDS | 30.0% |
| ! | AGATAGCAATTGTTGTTCTT+GGG | + | chr4_1:8347412-8347431 | Msa0533430:CDS | 30.0% |
| ATTTAACATAGTAGGATCAG+GGG | - | chr4_1:8347501-8347520 | None:intergenic | 30.0% | |
| CATTTAACATAGTAGGATCA+GGG | - | chr4_1:8347502-8347521 | None:intergenic | 30.0% | |
| ACATTTAACATAGTAGGATC+AGG | - | chr4_1:8347503-8347522 | None:intergenic | 30.0% | |
| !! | GGTTAAGTTTGATTGATTTG+TGG | + | chr4_1:8347664-8347683 | Msa0533430:intron | 30.0% |
| CTATTGACAATATCTTGCAT+GGG | + | chr4_1:8347833-8347852 | Msa0533430:intron | 30.0% | |
| TATTGACAATATCTTGCATG+GGG | + | chr4_1:8347834-8347853 | Msa0533430:intron | 30.0% | |
| ! | ACATAAGTGTTGTAAATAGG+AGG | + | chr4_1:8347962-8347981 | Msa0533430:intron | 30.0% |
| CTATAAACAACTAGGGTTAT+AGG | - | chr4_1:8348143-8348162 | None:intergenic | 30.0% | |
| CTATAACCCTAGTTGTTTAT+AGG | + | chr4_1:8348141-8348160 | Msa0533430:intron | 30.0% | |
| CAACTACCTATAAACAACTA+GGG | - | chr4_1:8348150-8348169 | None:intergenic | 30.0% | |
| AATATCAGAGCAAAAAAGGA+TGG | - | chr4_1:8348238-8348257 | None:intergenic | 30.0% | |
| AAGAAAGATTAGAGAGAAGA+GGG | - | chr4_1:8348269-8348288 | None:intergenic | 30.0% | |
| GAAAGATTCATGGTGAAAAA+TGG | - | chr4_1:8348339-8348358 | None:intergenic | 30.0% | |
| TGAAGAATCTAGGTAGAAAT+AGG | - | chr4_1:8348439-8348458 | None:intergenic | 30.0% | |
| ATTATGGATTTACAGTGAAG+GGG | - | chr4_1:8348694-8348713 | None:intergenic | 30.0% | |
| ! | TAAATCCATAATAATGGGGA+AGG | + | chr4_1:8348702-8348721 | Msa0533430:CDS | 30.0% |
| ! | GTATTACTTGGATTGACTTT+AGG | + | chr4_1:8348866-8348885 | Msa0533430:intron | 30.0% |
| ! | AACTTACCTATGTTCTGTTT+TGG | + | chr4_1:8348895-8348914 | Msa0533430:intron | 30.0% |
| ! | TTACTACAAAAGGTCTTTTC+AGG | - | chr4_1:8349146-8349165 | None:intergenic | 30.0% |
| TCTTAACAGGTTACTACAAA+AGG | - | chr4_1:8349156-8349175 | None:intergenic | 30.0% | |
| AACCTGTTAAGATCAATTAG+TGG | + | chr4_1:8349164-8349183 | Msa0533430:intron | 30.0% | |
| ACCTGTTAAGATCAATTAGT+GGG | + | chr4_1:8349165-8349184 | Msa0533430:intron | 30.0% | |
| !! | CAAGTAAACCCTTTAGAATT+GGG | - | chr4_1:8349202-8349221 | None:intergenic | 30.0% |
| GACATGAGTATTCATAAACA+AGG | + | chr4_1:8349233-8349252 | Msa0533430:intron | 30.0% | |
| ATGAGTATTCATAAACAAGG+AGG | + | chr4_1:8349236-8349255 | Msa0533430:CDS | 30.0% | |
| ! | ACACCAATTTTTCTCTTCAT+GGG | - | chr4_1:8349423-8349442 | None:intergenic | 30.0% |
| ! | AACACCAATTTTTCTCTTCA+TGG | - | chr4_1:8349424-8349443 | None:intergenic | 30.0% |
| ! | GATATGATTTTCATGGTTGT+TGG | - | chr4_1:8349516-8349535 | None:intergenic | 30.0% |
| CAACCATGAAAATCATATCT+TGG | + | chr4_1:8349517-8349536 | Msa0533430:intron | 30.0% | |
| ! | GTTCCAAGATATGATTTTCA+TGG | - | chr4_1:8349523-8349542 | None:intergenic | 30.0% |
| TCATGATCTAGTGTTCTTAA+TGG | + | chr4_1:8349605-8349624 | Msa0533430:intron | 30.0% | |
| TAGTGTTCTTAATGGAAACA+AGG | + | chr4_1:8349613-8349632 | Msa0533430:intron | 30.0% | |
| !! | GTTAAGTCTAGTTTAACTTG+TGG | + | chr4_1:8349657-8349676 | Msa0533430:intron | 30.0% |
| CATGGCCTATTTACTTAAAT+AGG | - | chr4_1:8349869-8349888 | None:intergenic | 30.0% | |
| !! | TGTTTTTGATAGCATAAGCA+TGG | - | chr4_1:8349887-8349906 | None:intergenic | 30.0% |
| ! | GACTTTTTGAATAGGCTTTT+AGG | + | chr4_1:8350021-8350040 | Msa0533430:intron | 30.0% |
| TACTTGTAAATAGGCCAAAT+TGG | - | chr4_1:8350091-8350110 | None:intergenic | 30.0% | |
| ! | TTTGAAGTAGGCCTATAAAT+AGG | + | chr4_1:8350139-8350158 | Msa0533430:intron | 30.0% |
| TGACCTAAAAGCCTATTTAT+AGG | - | chr4_1:8350153-8350172 | None:intergenic | 30.0% | |
| !! | TATAAATAGGCTTTTAGGTC+AGG | + | chr4_1:8350152-8350171 | Msa0533430:intron | 30.0% |
| !!! | CTATCATAGGCCTATTTTTT+TGG | - | chr4_1:8350183-8350202 | None:intergenic | 30.0% |
| CAAAAAAATAGGCCTATGAT+AGG | + | chr4_1:8350181-8350200 | Msa0533430:intron | 30.0% | |
| AGGCTTGCAAAAAATTTCTT+AGG | + | chr4_1:8350219-8350238 | Msa0533430:intron | 30.0% | |
| TTAATACATCACTCCAGATA+GGG | - | chr4_1:8350292-8350311 | None:intergenic | 30.0% | |
| TTTAATACATCACTCCAGAT+AGG | - | chr4_1:8350293-8350312 | None:intergenic | 30.0% | |
| !! | AATAGCTCTGAAAAAATTGG+TGG | + | chr4_1:8350511-8350530 | Msa0533430:CDS | 30.0% |
| GATTTCATGCATCATCTAAT+TGG | + | chr4_1:8350677-8350696 | Msa0533430:CDS | 30.0% | |
| ATGCTAGAATTTCATGAAGA+TGG | + | chr4_1:8350766-8350785 | Msa0533430:CDS | 30.0% | |
| CATATGTGCTCAAATCTTAA+AGG | - | chr4_1:8350823-8350842 | None:intergenic | 30.0% | |
| !! | CTTTAAGATTTGAGCACATA+TGG | + | chr4_1:8350821-8350840 | Msa0533430:CDS | 30.0% |
| ! | AAAGTAGTCTTAAGCTTCAT+CGG | - | chr4_1:8350910-8350929 | None:intergenic | 30.0% |
| TTGTTGTACTTTGATCTTGT+AGG | - | chr4_1:8350977-8350996 | None:intergenic | 30.0% | |
| AAAGAGATAGTCAAAGAAAG+AGG | + | chr4_1:8351169-8351188 | Msa0533430:CDS | 30.0% | |
| AGGACTAAAATGGAAATACA+TGG | + | chr4_1:8351213-8351232 | Msa0533430:CDS | 30.0% | |
| CTAAAATGGAAATACATGGA+AGG | + | chr4_1:8351217-8351236 | Msa0533430:CDS | 30.0% | |
| ATGGGAAAACAAGGATGTAA+CGG | + | chr4_1:8347281-8347300 | Msa0533430:CDS | 35.0% | |
| TGCTTAGAGAAAGAGAGAAT+AGG | + | chr4_1:8347305-8347324 | Msa0533430:CDS | 35.0% | |
| GCTTAGAGAAAGAGAGAATA+GGG | + | chr4_1:8347306-8347325 | Msa0533430:CDS | 35.0% | |
| ! | GAGATAGCAATTGTTGTTCT+TGG | + | chr4_1:8347411-8347430 | Msa0533430:CDS | 35.0% |
| CTCATATAGTAAACTCTGGA+TGG | - | chr4_1:8347477-8347496 | None:intergenic | 35.0% | |
| AAATCTCAATTAAGGGAGAG+AGG | + | chr4_1:8347800-8347819 | Msa0533430:intron | 35.0% | |
| GATATTGTCAATAGGAAGCA+CGG | - | chr4_1:8347827-8347846 | None:intergenic | 35.0% | |
| CCATGCAAGATATTGTCAAT+AGG | - | chr4_1:8347835-8347854 | None:intergenic | 35.0% | |
| CCTATTGACAATATCTTGCA+TGG | + | chr4_1:8347832-8347851 | Msa0533430:intron | 35.0% | |
| !! | ATGTCTTGAGTTTTAGCAGT+TGG | - | chr4_1:8347993-8348012 | None:intergenic | 35.0% |
| TAAACAACTAGGGTTATAGG+AGG | - | chr4_1:8348140-8348159 | None:intergenic | 35.0% | |
| GCAACTACCTATAAACAACT+AGG | - | chr4_1:8348151-8348170 | None:intergenic | 35.0% | |
| GAAGAAAGATTAGAGAGAAG+AGG | - | chr4_1:8348270-8348289 | None:intergenic | 35.0% | |
| TGGTGAAAAATGGACAGAAA+GGG | - | chr4_1:8348329-8348348 | None:intergenic | 35.0% | |
| ATGGTGAAAAATGGACAGAA+AGG | - | chr4_1:8348330-8348349 | None:intergenic | 35.0% | |
| ! | TTCTAAAGATGATCAGACAG+AGG | + | chr4_1:8348356-8348375 | Msa0533430:intron | 35.0% |
| GATTCCTGGTAGTAAATGAA+TGG | - | chr4_1:8348384-8348403 | None:intergenic | 35.0% | |
| ACCAGGAATCACAGTTTAAT+AGG | + | chr4_1:8348394-8348413 | Msa0533430:intron | 35.0% | |
| AAGTGTGCTATGAAGAATCT+AGG | - | chr4_1:8348449-8348468 | None:intergenic | 35.0% | |
| ATTCTTCATAGCACACTTTC+TGG | + | chr4_1:8348451-8348470 | Msa0533430:intron | 35.0% | |
| TCAAGATAACTGAACTGGAA+GGG | + | chr4_1:8348497-8348516 | Msa0533430:intron | 35.0% | |
| ATGAGAGAAATCAAGGGATT+TGG | - | chr4_1:8348641-8348660 | None:intergenic | 35.0% | |
| AGGAACATGAGAGAAATCAA+GGG | - | chr4_1:8348647-8348666 | None:intergenic | 35.0% | |
| AAGGAACATGAGAGAAATCA+AGG | - | chr4_1:8348648-8348667 | None:intergenic | 35.0% | |
| ATTTCTCTCATGTTCCTTTG+TGG | + | chr4_1:8348650-8348669 | Msa0533430:CDS | 35.0% | |
| ! | ATAATAATGGGGAAGGAGAT+GGG | + | chr4_1:8348709-8348728 | Msa0533430:CDS | 35.0% |
| CCTGTTAAGATCAATTAGTG+GGG | + | chr4_1:8349166-8349185 | Msa0533430:intron | 35.0% | |
| CTGTTAAGATCAATTAGTGG+GGG | + | chr4_1:8349167-8349186 | Msa0533430:intron | 35.0% | |
| TGTTAAGATCAATTAGTGGG+GGG | + | chr4_1:8349168-8349187 | Msa0533430:intron | 35.0% | |
| !! | GCAAGTAAACCCTTTAGAAT+TGG | - | chr4_1:8349203-8349222 | None:intergenic | 35.0% |
| AAAGGGTTTACTTGCTCAAA+TGG | + | chr4_1:8349208-8349227 | Msa0533430:intron | 35.0% | |
| AGAGATAACCAGCTTATCTA+GGG | - | chr4_1:8349364-8349383 | None:intergenic | 35.0% | |
| TAGAGATAACCAGCTTATCT+AGG | - | chr4_1:8349365-8349384 | None:intergenic | 35.0% | |
| GTTCCCATGAAGAGAAAAAT+TGG | + | chr4_1:8349417-8349436 | Msa0533430:intron | 35.0% | |
| ! | ATTGGTGTTTCAACAACGTA+TGG | + | chr4_1:8349435-8349454 | Msa0533430:intron | 35.0% |
| TTTGACACAACAGGAAGAAA+TGG | + | chr4_1:8349468-8349487 | Msa0533430:intron | 35.0% | |
| !! | ACTTCTAAGGAGCTTTTTGT+AGG | - | chr4_1:8349580-8349599 | None:intergenic | 35.0% |
| ! | ATTTTCAAAGGCCATAGATC+TGG | + | chr4_1:8349714-8349733 | Msa0533430:intron | 35.0% |
| ! | TCTAGCTATTATCTGGAGTT+AGG | + | chr4_1:8349740-8349759 | Msa0533430:intron | 35.0% |
| ! | CTAGCTATTATCTGGAGTTA+GGG | + | chr4_1:8349741-8349760 | Msa0533430:intron | 35.0% |
| ! | TATTATCTGGAGTTAGGGTT+GGG | + | chr4_1:8349746-8349765 | Msa0533430:intron | 35.0% |
| GTATGGCCTGTTTATGAAAA+AGG | + | chr4_1:8349819-8349838 | Msa0533430:intron | 35.0% | |
| TTATGAAAAAGGCTAGGCTT+AGG | + | chr4_1:8349830-8349849 | Msa0533430:intron | 35.0% | |
| AAGACCTGTCTATTGCTATA+AGG | - | chr4_1:8350047-8350066 | None:intergenic | 35.0% | |
| TTGCGATGAAATAGGCTTTA+AGG | + | chr4_1:8350065-8350084 | Msa0533430:intron | 35.0% | |
| !! | AATAGGCTTTAAGGCCAATT+TGG | + | chr4_1:8350074-8350093 | Msa0533430:intron | 35.0% |
| ! | AGGCCTATAAATAGGCTTTT+AGG | + | chr4_1:8350147-8350166 | Msa0533430:intron | 35.0% |
| AAATTTCTTAGGACATGCTC+AGG | + | chr4_1:8350230-8350249 | Msa0533430:intron | 35.0% | |
| AATATGTCTTGGTTCACAAC+TGG | + | chr4_1:8350374-8350393 | Msa0533430:intron | 35.0% | |
| ! | AACTCTAAGTGGCTCATTTT+TGG | + | chr4_1:8350469-8350488 | Msa0533430:CDS | 35.0% |
| AATAACACCCTTAACTCTTG+TGG | + | chr4_1:8350568-8350587 | Msa0533430:CDS | 35.0% | |
| ATTAAGGCCACAAGAGTTAA+GGG | - | chr4_1:8350578-8350597 | None:intergenic | 35.0% | |
| CACAATAGCCAAGATCATTA+AGG | - | chr4_1:8350594-8350613 | None:intergenic | 35.0% | |
| CTTAATGATCTTGGCTATTG+TGG | + | chr4_1:8350592-8350611 | Msa0533430:CDS | 35.0% | |
| GGCTTAATTCTCTTAGTGTA+AGG | - | chr4_1:8350802-8350821 | None:intergenic | 35.0% | |
| AAAGCTTGGCTTAATAGTGA+AGG | + | chr4_1:8350877-8350896 | Msa0533430:CDS | 35.0% | |
| ! | AAGTAGTCTTAAGCTTCATC+GGG | - | chr4_1:8350909-8350928 | None:intergenic | 35.0% |
| !! | GCTTAAGACTACTTTTGAAC+AGG | + | chr4_1:8350915-8350934 | Msa0533430:CDS | 35.0% |
| !! | TAAGACTACTTTTGAACAGG+TGG | + | chr4_1:8350918-8350937 | Msa0533430:CDS | 35.0% |
| GTAGGATATTTCCCCATATT+TGG | - | chr4_1:8350959-8350978 | None:intergenic | 35.0% | |
| !! | CCTGTTTTAAATTCTCTAGG+AGG | - | chr4_1:8351002-8351021 | None:intergenic | 35.0% |
| ! | CCTCCTAGAGAATTTAAAAC+AGG | + | chr4_1:8350999-8351018 | Msa0533430:CDS | 35.0% |
| !! | CTGCCTGTTTTAAATTCTCT+AGG | - | chr4_1:8351005-8351024 | None:intergenic | 35.0% |
| TGTAGGAGACAATTCTGATT+GGG | - | chr4_1:8351030-8351049 | None:intergenic | 35.0% | |
| TTGTAGGAGACAATTCTGAT+TGG | - | chr4_1:8351031-8351050 | None:intergenic | 35.0% | |
| GAATTGTCTCCTACAAATCA+AGG | + | chr4_1:8351035-8351054 | Msa0533430:CDS | 35.0% | |
| AGCATGGAGATCAAAATACT+AGG | + | chr4_1:8351136-8351155 | Msa0533430:CDS | 35.0% | |
| AGATACAATACACAGCATAC+AGG | + | chr4_1:8351193-8351212 | Msa0533430:CDS | 35.0% | |
| GGGTCTCATATAGTAAACTC+TGG | - | chr4_1:8347481-8347500 | None:intergenic | 40.0% | |
| TGCTAAAACTCAAGACATGC+TGG | + | chr4_1:8347995-8348014 | Msa0533430:intron | 40.0% | |
| TAAAACTCAAGACATGCTGG+AGG | + | chr4_1:8347998-8348017 | Msa0533430:intron | 40.0% | |
| AAAACTCAAGACATGCTGGA+GGG | + | chr4_1:8347999-8348018 | Msa0533430:intron | 40.0% | |
| AGGGTTATAGGAGGAAACAA+GGG | - | chr4_1:8348131-8348150 | None:intergenic | 40.0% | |
| TAGGGTTATAGGAGGAAACA+AGG | - | chr4_1:8348132-8348151 | None:intergenic | 40.0% | |
| GTAAAACAAACCCAGAGAGA+GGG | - | chr4_1:8348186-8348205 | None:intergenic | 40.0% | |
| TGTAAAACAAACCCAGAGAG+AGG | - | chr4_1:8348187-8348206 | None:intergenic | 40.0% | |
| !!! | TGGGTTTGTTTTACACCTCT+TGG | + | chr4_1:8348192-8348211 | Msa0533430:intron | 40.0% |
| AAAATGGACAGAAAGGGAAG+AGG | - | chr4_1:8348323-8348342 | None:intergenic | 40.0% | |
| GGATCCATTCATTTACTACC+AGG | + | chr4_1:8348377-8348396 | Msa0533430:intron | 40.0% | |
| GCCTATTAAACTGTGATTCC+TGG | - | chr4_1:8348398-8348417 | None:intergenic | 40.0% | |
| ! | ATAGCACACTTTCTGGTATC+TGG | + | chr4_1:8348458-8348477 | Msa0533430:intron | 40.0% |
| TCAGTTATCTTGAGTCCCAA+GGG | - | chr4_1:8348490-8348509 | None:intergenic | 40.0% | |
| TTCAGTTATCTTGAGTCCCA+AGG | - | chr4_1:8348491-8348510 | None:intergenic | 40.0% | |
| CTCAAGATAACTGAACTGGA+AGG | + | chr4_1:8348496-8348515 | Msa0533430:intron | 40.0% | |
| TTCCTTTGTGGATTCAGTTC+TGG | + | chr4_1:8348662-8348681 | Msa0533430:CDS | 40.0% | |
| TCCTTTGTGGATTCAGTTCT+GGG | + | chr4_1:8348663-8348682 | Msa0533430:CDS | 40.0% | |
| CATCTCCTTCCCCATTATTA+TGG | - | chr4_1:8348710-8348729 | None:intergenic | 40.0% | |
| ! | CATAATAATGGGGAAGGAGA+TGG | + | chr4_1:8348708-8348727 | Msa0533430:CDS | 40.0% |
| CCACAACCAAAACAGAACAT+AGG | - | chr4_1:8348904-8348923 | None:intergenic | 40.0% | |
| !!! | CCTATGTTCTGTTTTGGTTG+TGG | + | chr4_1:8348901-8348920 | Msa0533430:intron | 40.0% |
| CCCCACTAATTGATCTTAAC+AGG | - | chr4_1:8349169-8349188 | None:intergenic | 40.0% | |
| ! | CCTTTTGGCCCAATTCTAAA+GGG | + | chr4_1:8349191-8349210 | Msa0533430:intron | 40.0% |
| GGAAGACACAATACTACTCT+TGG | + | chr4_1:8349275-8349294 | Msa0533430:CDS | 40.0% | |
| !! | GGACTAGTTGAAATTTCCTC+TGG | - | chr4_1:8349332-8349351 | None:intergenic | 40.0% |
| ! | GCTTATCTAGGGTTGTTTGA+TGG | - | chr4_1:8349353-8349372 | None:intergenic | 40.0% |
| TCAAACAACCCTAGATAAGC+TGG | + | chr4_1:8349353-8349372 | Msa0533430:intron | 40.0% | |
| AGACTCTACTTTGACACAAC+AGG | + | chr4_1:8349459-8349478 | Msa0533430:intron | 40.0% | |
| ! | TGATTTTCATGGTTGTTGGC+TGG | - | chr4_1:8349512-8349531 | None:intergenic | 40.0% |
| ATCATATCTTGGAACTGCAG+AGG | + | chr4_1:8349528-8349547 | Msa0533430:intron | 40.0% | |
| TCATATCTTGGAACTGCAGA+GGG | + | chr4_1:8349529-8349548 | Msa0533430:intron | 40.0% | |
| !! | GATCATGACACTGACTTCTA+AGG | - | chr4_1:8349593-8349612 | None:intergenic | 40.0% |
| ! | CTATTATCTGGAGTTAGGGT+TGG | + | chr4_1:8349745-8349764 | Msa0533430:intron | 40.0% |
| TTTCATAAACAGGCCATACC+AGG | - | chr4_1:8349818-8349837 | None:intergenic | 40.0% | |
| GCCTGTTTATGAAAAAGGCT+AGG | + | chr4_1:8349824-8349843 | Msa0533430:intron | 40.0% | |
| !! | GCCTAGCCTTTTTCATAAAC+AGG | - | chr4_1:8349828-8349847 | None:intergenic | 40.0% |
| ! | TAGGCCTTATAGCAATAGAC+AGG | + | chr4_1:8350040-8350059 | Msa0533430:intron | 40.0% |
| !!! | ATAGGCCTATTTTTTTGGCC+TGG | - | chr4_1:8350178-8350197 | None:intergenic | 40.0% |
| TCAGCAGAGATAACTCTAAG+TGG | + | chr4_1:8350458-8350477 | Msa0533430:intron | 40.0% | |
| CATTAAGGCCACAAGAGTTA+AGG | - | chr4_1:8350579-8350598 | None:intergenic | 40.0% | |
| ! | TCTTGTGGCCTTAATGATCT+TGG | + | chr4_1:8350583-8350602 | Msa0533430:CDS | 40.0% |
| ATTCTAGCATAATAGGGCAG+TGG | - | chr4_1:8350756-8350775 | None:intergenic | 40.0% | |
| AGTGGGGCAAATCCAAATAT+GGG | + | chr4_1:8350944-8350963 | Msa0533430:CDS | 40.0% | |
| TCCTCAAGAAGGAAGAAACT+TGG | + | chr4_1:8351082-8351101 | Msa0533430:CDS | 40.0% | |
| ACCAAGTTTCTTCCTTCTTG+AGG | - | chr4_1:8351086-8351105 | None:intergenic | 40.0% | |
| TCAAGAAGGAAGAAACTTGG+TGG | + | chr4_1:8351085-8351104 | Msa0533430:CDS | 40.0% | |
| CAAGAAGGAAGAAACTTGGT+GGG | + | chr4_1:8351086-8351105 | Msa0533430:CDS | 40.0% | |
| CACAGCATACAGGACTAAAA+TGG | + | chr4_1:8351203-8351222 | Msa0533430:CDS | 40.0% | |
| GAAAGAGAGAATAGGGCTGT+TGG | + | chr4_1:8347313-8347332 | Msa0533430:CDS | 45.0% | |
| GTGCTCTTCTGGTCACATAA+CGG | + | chr4_1:8347445-8347464 | Msa0533430:CDS | 45.0% | |
| TTGTCTGCCAACAGGTTTCA+AGG | + | chr4_1:8347563-8347582 | Msa0533430:CDS | 45.0% | |
| AATCCAGCCTTGAAACCTGT+TGG | - | chr4_1:8347573-8347592 | None:intergenic | 45.0% | |
| AACAGGTTTCAAGGCTGGAT+TGG | + | chr4_1:8347572-8347591 | Msa0533430:CDS | 45.0% | |
| GAAACCAGGTGGAAACTCAA+TGG | - | chr4_1:8348091-8348110 | None:intergenic | 45.0% | |
| GAAAGGGAGAAGAAGAAACC+AGG | - | chr4_1:8348105-8348124 | None:intergenic | 45.0% | |
| TTATAGGAGGAAACAAGGGG+AGG | - | chr4_1:8348127-8348146 | None:intergenic | 45.0% | |
| GGGTTATAGGAGGAAACAAG+GGG | - | chr4_1:8348130-8348149 | None:intergenic | 45.0% | |
| AGAGAGAGGGAGATAACAAG+GGG | - | chr4_1:8348173-8348192 | None:intergenic | 45.0% | |
| CAGAGAGAGGGAGATAACAA+GGG | - | chr4_1:8348174-8348193 | None:intergenic | 45.0% | |
| ! | CTTGTTATCTCCCTCTCTCT+GGG | + | chr4_1:8348173-8348192 | Msa0533430:intron | 45.0% |
| AGAGGTTTGAAGAGTAGGAG+AGG | - | chr4_1:8348305-8348324 | None:intergenic | 45.0% | |
| AGGGAAGAGGTTTGAAGAGT+AGG | - | chr4_1:8348310-8348329 | None:intergenic | 45.0% | |
| GGGACTCAAGATAACTGAAC+TGG | + | chr4_1:8348492-8348511 | Msa0533430:intron | 45.0% | |
| TGATCCAGAGGCTACTCTTT+AGG | - | chr4_1:8348570-8348589 | None:intergenic | 45.0% | |
| AACAGTTCCTGATGATCCAG+AGG | - | chr4_1:8348582-8348601 | None:intergenic | 45.0% | |
| TCTGGATCATCAGGAACTGT+TGG | + | chr4_1:8348581-8348600 | Msa0533430:CDS | 45.0% | |
| CCTTTGTGGATTCAGTTCTG+GGG | + | chr4_1:8348664-8348683 | Msa0533430:CDS | 45.0% | |
| TGAACAGCTAGGAACAGTGT+TGG | + | chr4_1:8348732-8348751 | Msa0533430:CDS | 45.0% | |
| ! | CTAGGAACAGTGTTGGATGT+GGG | + | chr4_1:8348739-8348758 | Msa0533430:CDS | 45.0% |
| ! | ATGTACATTCCGGCTCTGAT+TGG | - | chr4_1:8348829-8348848 | None:intergenic | 45.0% |
| ATCAGAGCCGGAATGTACAT+TGG | + | chr4_1:8348829-8348848 | Msa0533430:CDS | 45.0% | |
| CTGGTTGCCAATGTACATTC+CGG | - | chr4_1:8348839-8348858 | None:intergenic | 45.0% | |
| AATGTACATTGGCAACCAGC+AGG | + | chr4_1:8348840-8348859 | Msa0533430:CDS | 45.0% | |
| ACCAGCAGGATGGTATTACT+TGG | + | chr4_1:8348854-8348873 | Msa0533430:intron | 45.0% | |
| TCCAAGTAATACCATCCTGC+TGG | - | chr4_1:8348858-8348877 | None:intergenic | 45.0% | |
| ATCTTAGCCAAGCTTCACGA+GGG | - | chr4_1:8348991-8349010 | None:intergenic | 45.0% | |
| ! | GCCTTTTGGCCCAATTCTAA+AGG | + | chr4_1:8349190-8349209 | Msa0533430:intron | 45.0% |
| !! | CCCTTTAGAATTGGGCCAAA+AGG | - | chr4_1:8349194-8349213 | None:intergenic | 45.0% |
| TGTGTCTTCCTTGTCCACTT+GGG | - | chr4_1:8349265-8349284 | None:intergenic | 45.0% | |
| TTGTGTCTTCCTTGTCCACT+TGG | - | chr4_1:8349266-8349285 | None:intergenic | 45.0% | |
| ! | AGTGTTTTGCACACCATGGT+GGG | - | chr4_1:8349307-8349326 | None:intergenic | 45.0% |
| ! | TAGTGTTTTGCACACCATGG+TGG | - | chr4_1:8349308-8349327 | None:intergenic | 45.0% |
| ! | TGTAGGCTCTAACTGCAGAT+GGG | - | chr4_1:8349563-8349582 | None:intergenic | 45.0% |
| ! | TTGTAGGCTCTAACTGCAGA+TGG | - | chr4_1:8349564-8349583 | None:intergenic | 45.0% |
| TTCAAAGGCCATAGATCTGG+TGG | + | chr4_1:8349717-8349736 | Msa0533430:intron | 45.0% | |
| TAGCTAGACCACCAGATCTA+TGG | - | chr4_1:8349728-8349747 | None:intergenic | 45.0% | |
| CTGGTGGTCTAGCTATTATC+TGG | + | chr4_1:8349733-8349752 | Msa0533430:intron | 45.0% | |
| ATACCAGGCTTAAACAGGTC+AGG | - | chr4_1:8349803-8349822 | None:intergenic | 45.0% | |
| TGACCTGTTTAAGCCTGGTA+TGG | + | chr4_1:8349802-8349821 | Msa0533430:intron | 45.0% | |
| AACAGCCTACAAAGCCTGAT+AGG | + | chr4_1:8349903-8349922 | Msa0533430:intron | 45.0% | |
| GACAGGTCTTGCGATGAAAT+AGG | + | chr4_1:8350057-8350076 | Msa0533430:intron | 45.0% | |
| TCAGGCCAGGCCAAAAAAAT+AGG | + | chr4_1:8350170-8350189 | Msa0533430:intron | 45.0% | |
| ATAGGCCTATGATAGGCCAT+AGG | + | chr4_1:8350188-8350207 | Msa0533430:intron | 45.0% | |
| !!! | ATTTTTTGCAAGCCTGAGCC+TGG | - | chr4_1:8350214-8350233 | None:intergenic | 45.0% |
| CTCCAGATAGGGATGAGAAT+AGG | - | chr4_1:8350281-8350300 | None:intergenic | 45.0% | |
| ! | TTTTGAACAGGTGGCTGAGT+GGG | + | chr4_1:8350927-8350946 | Msa0533430:CDS | 45.0% |
| GAGTGGGGCAAATCCAAATA+TGG | + | chr4_1:8350943-8350962 | Msa0533430:CDS | 45.0% | |
| GTGGGGCAAATCCAAATATG+GGG | + | chr4_1:8350945-8350964 | Msa0533430:CDS | 45.0% | |
| !! | GCTCAGTTGCCTTGATTTGT+AGG | - | chr4_1:8351047-8351066 | None:intergenic | 45.0% |
| AAGGCAACTGAGCAGATCTT+AGG | + | chr4_1:8351054-8351073 | Msa0533430:CDS | 45.0% | |
| AGGCAACTGAGCAGATCTTA+GGG | + | chr4_1:8351055-8351074 | Msa0533430:CDS | 45.0% | |
| CTCAAAGAGCAAAATCCCAC+TGG | + | chr4_1:8351109-8351128 | Msa0533430:CDS | 45.0% | |
| GAGAGAGTCAAGTGCTCTTC+TGG | + | chr4_1:8347434-8347453 | Msa0533430:CDS | 50.0% | |
| GGCGTAGCTCTTCAAATGGA+CGG | - | chr4_1:8347535-8347554 | None:intergenic | 50.0% | |
| ! | AGGAGGCGTAGCTCTTCAAA+TGG | - | chr4_1:8347539-8347558 | None:intergenic | 50.0% |
| TGTTGGCAGACAAGTCAAGG+AGG | - | chr4_1:8347556-8347575 | None:intergenic | 50.0% | |
| !! | TCCTTGACTTGTCTGCCAAC+AGG | + | chr4_1:8347555-8347574 | Msa0533430:CDS | 50.0% |
| ACCTGTTGGCAGACAAGTCA+AGG | - | chr4_1:8347559-8347578 | None:intergenic | 50.0% | |
| TAAGGACCAAGGTCGTACCT+TGG | - | chr4_1:8347601-8347620 | None:intergenic | 50.0% | |
| ACCTCCATTGAGTTTCCACC+TGG | + | chr4_1:8348084-8348103 | Msa0533430:intron | 50.0% | |
| ACCAGGTGGAAACTCAATGG+AGG | - | chr4_1:8348088-8348107 | None:intergenic | 50.0% | |
| AGGGAGAAGAAGAAACCAGG+TGG | - | chr4_1:8348102-8348121 | None:intergenic | 50.0% | |
| GAGGAAACAAGGGGAGGAAA+GGG | - | chr4_1:8348121-8348140 | None:intergenic | 50.0% | |
| CCAGAGAGAGGGAGATAACA+AGG | - | chr4_1:8348175-8348194 | None:intergenic | 50.0% | |
| ! | CCTTGTTATCTCCCTCTCTC+TGG | + | chr4_1:8348172-8348191 | Msa0533430:intron | 50.0% |
| !! | ACCTCTTGGTGCTTGTCTTC+TGG | + | chr4_1:8348206-8348225 | Msa0533430:intron | 50.0% |
| ACCAGAAGACAAGCACCAAG+AGG | - | chr4_1:8348210-8348229 | None:intergenic | 50.0% | |
| TGGTATCTGGTGCAATCCCT+TGG | + | chr4_1:8348471-8348490 | Msa0533430:intron | 50.0% | |
| GGTATCTGGTGCAATCCCTT+GGG | + | chr4_1:8348472-8348491 | Msa0533430:intron | 50.0% | |
| GAGTCCTAAAGAGTAGCCTC+TGG | + | chr4_1:8348563-8348582 | Msa0533430:CDS | 50.0% | |
| AGAGTAGCCTCTGGATCATC+AGG | + | chr4_1:8348572-8348591 | Msa0533430:CDS | 50.0% | |
| TGTCTACATTCCTGTCCCAG+GGG | - | chr4_1:8348618-8348637 | None:intergenic | 50.0% | |
| GTGTCTACATTCCTGTCCCA+GGG | - | chr4_1:8348619-8348638 | None:intergenic | 50.0% | |
| CCCCAGAACTGAATCCACAA+AGG | - | chr4_1:8348667-8348686 | None:intergenic | 50.0% | |
| AAGGAGATGGGTGAACAGCT+AGG | + | chr4_1:8348721-8348740 | Msa0533430:CDS | 50.0% | |
| ! | GCTAGGAACAGTGTTGGATG+TGG | + | chr4_1:8348738-8348757 | Msa0533430:CDS | 50.0% |
| ATCACCAAGCCAATCAGAGC+CGG | + | chr4_1:8348817-8348836 | Msa0533430:CDS | 50.0% | |
| TACATTGGCAACCAGCAGGA+TGG | + | chr4_1:8348844-8348863 | Msa0533430:CDS | 50.0% | |
| GGTTTGTGCCTCCTTCAAAG+GGG | - | chr4_1:8348970-8348989 | None:intergenic | 50.0% | |
| GGGTTTGTGCCTCCTTCAAA+GGG | - | chr4_1:8348971-8348990 | None:intergenic | 50.0% | |
| AGGGTTTGTGCCTCCTTCAA+AGG | - | chr4_1:8348972-8348991 | None:intergenic | 50.0% | |
| GATCTTAGCCAAGCTTCACG+AGG | - | chr4_1:8348992-8349011 | None:intergenic | 50.0% | |
| ! | TCAATTAGTGGGGGGCCTTT+TGG | + | chr4_1:8349176-8349195 | Msa0533430:intron | 50.0% |
| CTCTTGGTAAATCCCCACCA+TGG | + | chr4_1:8349291-8349310 | Msa0533430:CDS | 50.0% | |
| ! | GTGTTTTGCACACCATGGTG+GGG | - | chr4_1:8349306-8349325 | None:intergenic | 50.0% |
| ! | GGCTAGTGTTTTGCACACCA+TGG | - | chr4_1:8349311-8349330 | None:intergenic | 50.0% |
| GTGTGCAAAACACTAGCCAG+AGG | + | chr4_1:8349313-8349332 | Msa0533430:intron | 50.0% | |
| ! | AATGGCACGCCTTGTTCCTA+AGG | + | chr4_1:8349486-8349505 | Msa0533430:intron | 50.0% |
| CTGGAGTTAGGGTTGGGAAT+AGG | + | chr4_1:8349752-8349771 | Msa0533430:intron | 50.0% | |
| AGGCCATACCAGGCTTAAAC+AGG | - | chr4_1:8349808-8349827 | None:intergenic | 50.0% | |
| CAAAAATAGGCCGGCCTATC+AGG | - | chr4_1:8349920-8349939 | None:intergenic | 50.0% | |
| !! | ATAGGCTTTTAGGTCAGGCC+AGG | + | chr4_1:8350157-8350176 | Msa0533430:intron | 50.0% |
| GATAGGGATGAGAATAGGCC+AGG | - | chr4_1:8350276-8350295 | None:intergenic | 50.0% | |
| GGCCTATTCTCATCCCTATC+TGG | + | chr4_1:8350276-8350295 | Msa0533430:intron | 50.0% | |
| GTCTTAAGCTTCATCGGGCT+AGG | - | chr4_1:8350904-8350923 | None:intergenic | 50.0% | |
| ! | CTTTTGAACAGGTGGCTGAG+TGG | + | chr4_1:8350926-8350945 | Msa0533430:CDS | 50.0% |
| TTTGAACAGGTGGCTGAGTG+GGG | + | chr4_1:8350928-8350947 | Msa0533430:CDS | 50.0% | |
| GGCAACTGAGCAGATCTTAG+GGG | + | chr4_1:8351056-8351075 | Msa0533430:CDS | 50.0% | |
| CTTAGGGGATCTCCTCAAGA+AGG | + | chr4_1:8351071-8351090 | Msa0533430:CDS | 50.0% | |
| !! | AAATCCCACTGGCTTCAGCA+TGG | + | chr4_1:8351120-8351139 | Msa0533430:CDS | 50.0% |
| ATCTCCATGCTGAAGCCAGT+GGG | - | chr4_1:8351127-8351146 | None:intergenic | 50.0% | |
| CTGCCAACAGGTTTCAAGGC+TGG | + | chr4_1:8347567-8347586 | Msa0533430:CDS | 55.0% | |
| !! | CAAGGCTGGATTGGCAACCA+AGG | + | chr4_1:8347581-8347600 | Msa0533430:CDS | 55.0% |
| TGGCAACCAAGGTACGACCT+TGG | + | chr4_1:8347592-8347611 | Msa0533430:intron | 55.0% | |
| GGAGGAAACAAGGGGAGGAA+AGG | - | chr4_1:8348122-8348141 | None:intergenic | 55.0% | |
| TTGGCTGCTTCTACACCCCT+GGG | + | chr4_1:8348600-8348619 | Msa0533430:CDS | 55.0% | |
| GGTGTCTACATTCCTGTCCC+AGG | - | chr4_1:8348620-8348639 | None:intergenic | 55.0% | |
| ! | CATTCCGGCTCTGATTGGCT+TGG | - | chr4_1:8348824-8348843 | None:intergenic | 55.0% |
| TCCTTCAAAGGGGAGATGGG+GGG | - | chr4_1:8348960-8348979 | None:intergenic | 55.0% | |
| CTCCTTCAAAGGGGAGATGG+GGG | - | chr4_1:8348961-8348980 | None:intergenic | 55.0% | |
| CCTCCTTCAAAGGGGAGATG+GGG | - | chr4_1:8348962-8348981 | None:intergenic | 55.0% | |
| GCCTCCTTCAAAGGGGAGAT+GGG | - | chr4_1:8348963-8348982 | None:intergenic | 55.0% | |
| TGCCTCCTTCAAAGGGGAGA+TGG | - | chr4_1:8348964-8348983 | None:intergenic | 55.0% | |
| GCACAAACCCTCGTGAAGCT+TGG | + | chr4_1:8348981-8349000 | Msa0533430:intron | 55.0% | |
| AAACAAGGAGGCAGCCCAAG+TGG | + | chr4_1:8349248-8349267 | Msa0533430:CDS | 55.0% | |
| !! | GTTGGCTGGCCTTAGGAACA+AGG | - | chr4_1:8349498-8349517 | None:intergenic | 55.0% |
| !! | CATGGTTGTTGGCTGGCCTT+AGG | - | chr4_1:8349505-8349524 | None:intergenic | 55.0% |
| TCTTGGAACTGCAGAGGGCT+TGG | + | chr4_1:8349534-8349553 | Msa0533430:intron | 55.0% | |
| CTTGGAACTGCAGAGGGCTT+GGG | + | chr4_1:8349535-8349554 | Msa0533430:intron | 55.0% | |
| GTTAGGGTTGGGAATAGGCC+AGG | + | chr4_1:8349757-8349776 | Msa0533430:intron | 55.0% | |
| GCTTAAACAGGTCAGGCCGT+AGG | - | chr4_1:8349796-8349815 | None:intergenic | 55.0% | |
| GCCTACAAAGCCTGATAGGC+CGG | + | chr4_1:8349907-8349926 | Msa0533430:intron | 55.0% | |
| CCTGGCCTATGGCCTATCAT+AGG | - | chr4_1:8350196-8350215 | None:intergenic | 55.0% | |
| CCTATGATAGGCCATAGGCC+AGG | + | chr4_1:8350193-8350212 | Msa0533430:intron | 55.0% | |
| TGCTCAGGCCTATCAAAGCC+TGG | + | chr4_1:8350245-8350264 | Msa0533430:intron | 55.0% | |
| AGGCCTATCAAAGCCTGGTC+TGG | + | chr4_1:8350250-8350269 | Msa0533430:intron | 55.0% | |
| ! | AGGCCAGACCAGGCTTTGAT+AGG | - | chr4_1:8350256-8350275 | None:intergenic | 55.0% |
| TATCAAAGCCTGGTCTGGCC+TGG | + | chr4_1:8350255-8350274 | Msa0533430:intron | 55.0% | |
| GATCTCCATGCTGAAGCCAG+TGG | - | chr4_1:8351128-8351147 | None:intergenic | 55.0% | |
| GTTGGCTGCTTCTACACCCC+TGG | + | chr4_1:8348599-8348618 | Msa0533430:CDS | 60.0% | |
| TGCTTCTACACCCCTGGGAC+AGG | + | chr4_1:8348605-8348624 | Msa0533430:CDS | 60.0% | |
| ACCCCCCATCTCCCCTTTGA+AGG | + | chr4_1:8348956-8348975 | Msa0533430:intron | 60.0% | |
| ! | CCCCATCTCCCCTTTGAAGG+AGG | + | chr4_1:8348959-8348978 | Msa0533430:intron | 60.0% |
| AATAGGCCAGGCCGGCTACA+GGG | + | chr4_1:8349769-8349788 | Msa0533430:intron | 60.0% | |
| CGGCCTGACCTGTTTAAGCC+TGG | + | chr4_1:8349797-8349816 | Msa0533430:intron | 60.0% | |
| ! | GCCGGCCTATCAGGCTTTGT+AGG | - | chr4_1:8349911-8349930 | None:intergenic | 60.0% |
| ATAGGCCATAGGCCAGGCTC+AGG | + | chr4_1:8350199-8350218 | Msa0533430:intron | 60.0% | |
| AGAATAGGCCAGGCCAGACC+AGG | - | chr4_1:8350266-8350285 | None:intergenic | 60.0% | |
| GGAGGCAGCCCAAGTGGACA+AGG | + | chr4_1:8349254-8349273 | Msa0533430:CDS | 65.0% | |
| GGGTTGGGAATAGGCCAGGC+CGG | + | chr4_1:8349761-8349780 | Msa0533430:intron | 65.0% | |
| GAATAGGCCAGGCCGGCTAC+AGG | + | chr4_1:8349768-8349787 | Msa0533430:intron | 65.0% | |
| ATAGGCCAGGCCGGCTACAG+GGG | + | chr4_1:8349770-8349789 | Msa0533430:intron | 65.0% | |
| GCAAGCCTGAGCCTGGCCTA+TGG | - | chr4_1:8350207-8350226 | None:intergenic | 65.0% | |
| AGGCCGGCTACAGGGGCCTA+CGG | + | chr4_1:8349777-8349796 | Msa0533430:intron | 70.0% | |
| AGGCCGTAGGCCCCTGTAGC+CGG | - | chr4_1:8349783-8349802 | None:intergenic | 70.0% | |
| GTAGGCCCCTGTAGCCGGCC+TGG | - | chr4_1:8349778-8349797 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 8347281 | 8351269 | 8347281 | ID=Msa0533430;Name=Msa0533430 |
| chr4_1 | mRNA | 8347281 | 8351269 | 8347281 | ID=Msa0533430-mRNA-1;Parent=Msa0533430;Name=Msa0533430-mRNA-1;_AED=0.49;_eAED=0.49;_QI=0|0|0|0.25|1|1|4|0|507 |
| chr4_1 | exon | 8347281 | 8347602 | 8347281 | ID=Msa0533430-mRNA-1:exon:2821;Parent=Msa0533430-mRNA-1 |
| chr4_1 | exon | 8348551 | 8348865 | 8348551 | ID=Msa0533430-mRNA-1:exon:2822;Parent=Msa0533430-mRNA-1 |
| chr4_1 | exon | 8349234 | 8349312 | 8349234 | ID=Msa0533430-mRNA-1:exon:2823;Parent=Msa0533430-mRNA-1 |
| chr4_1 | exon | 8350462 | 8351269 | 8350462 | ID=Msa0533430-mRNA-1:exon:2824;Parent=Msa0533430-mRNA-1 |
| chr4_1 | CDS | 8347281 | 8347602 | 8347281 | ID=Msa0533430-mRNA-1:cds;Parent=Msa0533430-mRNA-1 |
| chr4_1 | CDS | 8348551 | 8348865 | 8348551 | ID=Msa0533430-mRNA-1:cds;Parent=Msa0533430-mRNA-1 |
| chr4_1 | CDS | 8349234 | 8349312 | 8349234 | ID=Msa0533430-mRNA-1:cds;Parent=Msa0533430-mRNA-1 |
| chr4_1 | CDS | 8350462 | 8351269 | 8350462 | ID=Msa0533430-mRNA-1:cds;Parent=Msa0533430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
