AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1010200

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1010200 MtrunA17_Chr6g0456691 73.380 432 114 1 1 432 1 431 0.0 701
Msa1010200 MtrunA17_Chr7g0221281 94.583 240 13 0 185 424 1 240 5.02e-173 484
Msa1010200 MtrunA17_Chr6g0456681 53.630 427 178 6 1 423 1 411 1.65e-160 459
Msa1010200 MtrunA17_Chr7g0221271 98.049 205 4 0 1 205 1 205 1.61e-150 425
Msa1010200 MtrunA17_Chr2g0283851 50.140 357 160 9 80 425 56 405 2.01e-119 354
Msa1010200 MtrunA17_Chr7g0221291 94.737 171 9 0 1 171 1 171 1.38e-117 340
Msa1010200 MtrunA17_Chr8g0387921 41.278 407 227 6 24 420 15 419 2.72e-113 339
Msa1010200 MtrunA17_Chr6g0451321 45.152 361 190 5 68 424 105 461 1.40e-109 331
Msa1010200 MtrunA17_Chr8g0347321 41.370 365 207 3 62 420 76 439 1.44e-108 327
Msa1010200 MtrunA17_Chr5g0414041 42.898 352 188 7 79 421 87 434 6.28e-96 295
Msa1010200 MtrunA17_Chr5g0414061 40.227 353 196 8 78 421 93 439 7.74e-96 295
Msa1010200 MtrunA17_Chr8g0391481 40.000 355 197 8 77 421 25 373 1.27e-93 287
Msa1010200 MtrunA17_Chr7g0226991 39.155 355 200 8 77 421 55 403 1.50e-92 285
Msa1010200 MtrunA17_Chr3g0140371 40.341 352 193 8 79 421 18 361 5.38e-92 282
Msa1010200 MtrunA17_Chr5g0414091 38.418 354 205 7 77 421 83 432 1.03e-87 274
Msa1010200 MtrunA17_Chr5g0414051 38.701 354 199 10 79 421 75 421 8.83e-85 266
Msa1010200 MtrunA17_Chr1g0188191 34.783 368 224 6 67 423 222 584 2.78e-77 251
Msa1010200 MtrunA17_Chr6g0476041 33.880 366 226 6 69 423 157 517 3.30e-75 244
Msa1010200 MtrunA17_Chr1g0175671 31.605 405 221 13 52 423 131 512 7.87e-55 190
Msa1010200 MtrunA17_Chr7g0258851 31.818 396 229 11 53 432 229 599 1.48e-51 183
Msa1010200 MtrunA17_Chr2g0287901 33.242 364 198 13 79 420 97 437 5.11e-49 173
Msa1010200 MtrunA17_Chr7g0259711 30.726 358 216 11 79 420 91 432 4.10e-48 171
Msa1010200 MtrunA17_Chr5g0413271 32.213 357 206 12 77 420 143 476 1.76e-47 169
Msa1010200 MtrunA17_Chr4g0071391 29.457 387 231 12 60 427 90 453 1.90e-47 169
Msa1010200 MtrunA17_Chr5g0430371 31.844 358 208 12 77 416 56 395 1.03e-45 163
Msa1010200 MtrunA17_Chr3g0105301 29.310 348 226 8 79 420 43 376 9.86e-45 160
Msa1010200 MtrunA17_Chr8g0368461 32.258 372 206 12 78 421 177 530 3.79e-44 161
Msa1010200 MtrunA17_Chr5g0414081 37.441 211 118 7 232 432 2 208 5.84e-44 152
Msa1010200 MtrunA17_Chr7g0269991 30.056 356 212 11 79 421 137 468 1.62e-41 153
Msa1010200 MtrunA17_Chr8g0384151 29.722 360 214 14 76 423 87 419 1.78e-41 152
Msa1010200 MtrunA17_Chr3g0113671 30.682 352 218 9 79 416 106 445 4.79e-41 151
Msa1010200 MtrunA17_Chr8g0360521 26.559 433 274 11 8 420 1 409 6.35e-41 150
Msa1010200 MtrunA17_Chr7g0243301 30.790 367 222 15 68 416 53 405 7.08e-41 150
Msa1010200 MtrunA17_Chr4g0068111 28.037 428 262 13 10 420 55 453 2.90e-40 149
Msa1010200 MtrunA17_Chr4g0005491 30.387 362 226 12 70 416 53 403 5.95e-40 147
Msa1010200 MtrunA17_Chr1g0213281 29.888 358 218 9 79 420 175 515 8.23e-40 149
Msa1010200 MtrunA17_Chr4g0049421 27.945 365 220 8 79 420 48 392 1.89e-39 146
Msa1010200 MtrunA17_Chr5g0437601 29.577 355 224 11 79 420 83 424 2.87e-39 146
Msa1010200 MtrunA17_Chr4g0070341 26.893 383 242 10 56 420 109 471 2.99e-39 147
Msa1010200 MtrunA17_Chr3g0114101 29.213 356 224 10 79 420 89 430 3.78e-38 143
Msa1010200 MtrunA17_Chr4g0006991 29.775 356 226 10 77 420 84 427 9.19e-38 142
Msa1010200 MtrunA17_Chr1g0171171 29.096 354 216 11 75 420 49 375 1.02e-37 140
Msa1010200 MtrunA17_Chr2g0283581 31.054 351 203 11 79 422 42 360 1.75e-37 140
Msa1010200 MtrunA17_Chr3g0085081 28.329 353 217 10 70 416 22 344 1.09e-36 137
Msa1010200 MtrunA17_Chr6g0455901 26.744 430 266 11 23 427 18 423 1.51e-36 139
Msa1010200 MtrunA17_Chr3g0085071 27.350 351 223 8 70 416 37 359 2.40e-36 137
Msa1010200 MtrunA17_Chr1g0210771 29.494 356 205 14 75 416 55 378 8.51e-36 135
Msa1010200 MtrunA17_Chr3g0091031 29.014 355 212 10 70 416 22 344 1.35e-35 134
Msa1010200 MtrunA17_Chr2g0314801 28.532 361 207 10 75 420 29 353 1.75e-35 134
Msa1010200 MtrunA17_Chr4g0045951 28.329 353 217 7 76 422 42 364 2.78e-35 134
Msa1010200 MtrunA17_Chr2g0325481 28.448 348 206 9 78 416 49 362 3.00e-35 134
Msa1010200 MtrunA17_Chr8g0384421 26.531 392 236 11 53 420 109 472 1.30e-34 134
Msa1010200 MtrunA17_Chr7g0242701 30.194 361 218 13 77 420 84 427 1.81e-34 133
Msa1010200 MtrunA17_Chr5g0437291 28.767 365 215 13 77 416 163 507 2.69e-34 134
Msa1010200 MtrunA17_Chr4g0005481 29.459 370 228 11 66 420 95 446 3.14e-34 132
Msa1010200 MtrunA17_Chr4g0045941 28.080 349 221 9 72 416 24 346 1.22e-33 129
Msa1010200 MtrunA17_Chr5g0413851 30.027 373 215 14 60 420 21 359 1.80e-32 126
Msa1010200 MtrunA17_Chr4g0041011 26.446 363 226 8 66 420 34 363 1.99e-31 123
Msa1010200 MtrunA17_Chr3g0097891 28.488 344 212 10 79 416 31 346 5.43e-31 122
Msa1010200 MtrunA17_Chr3g0126021 24.419 430 263 13 24 420 59 459 9.78e-28 114
Msa1010200 MtrunA17_Chr2g0314791 27.635 351 211 10 79 420 29 345 5.42e-27 110
Msa1010200 MtrunA17_Chr1g0209921 48.387 93 46 2 77 167 42 134 4.52e-22 95.5
Msa1010200 MtrunA17_Chr1g0178081 29.808 208 120 7 62 251 35 234 1.97e-17 83.6
Msa1010200 MtrunA17_Chr1g0178081 33.588 131 72 5 298 420 218 341 1.20e-11 65.9
Msa1010200 MtrunA17_Chr7g0275501 47.692 65 33 1 356 419 4 68 8.39e-14 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1010200 AT5G15900.2 59.574 423 161 5 3 423 17 431 0.0 530
Msa1010200 AT5G15900.1 59.762 420 159 5 6 423 1 412 0.0 528
Msa1010200 AT3G02440.2 59.429 350 138 3 79 426 135 482 1.50e-161 464
Msa1010200 AT3G02440.1 59.429 350 138 3 79 426 127 474 1.85e-161 464
Msa1010200 AT5G15890.1 51.961 408 169 6 36 423 125 525 1.52e-158 458
Msa1010200 AT3G28150.1 42.197 346 195 3 78 421 69 411 8.33e-105 317
Msa1010200 AT1G01430.1 38.771 423 235 12 22 426 38 454 9.45e-102 311
Msa1010200 AT4G01080.1 42.149 363 182 8 69 418 81 428 8.39e-99 303
Msa1010200 AT4G23790.1 38.122 362 217 4 66 420 66 427 8.20e-97 297
Msa1010200 AT4G11090.1 35.366 410 251 6 24 420 17 425 1.28e-96 297
Msa1010200 AT1G70230.1 36.879 423 234 9 16 421 6 412 3.85e-93 287
Msa1010200 AT4G25360.1 33.933 389 237 7 47 423 147 527 3.02e-77 250
Msa1010200 AT4G25360.2 33.933 389 237 7 47 423 147 527 3.02e-77 250
Msa1010200 AT5G51640.1 34.271 391 237 9 53 428 113 498 8.32e-77 248
Msa1010200 AT3G06080.2 32.086 374 213 11 79 431 103 456 2.44e-51 180
Msa1010200 AT1G60790.1 33.858 381 197 13 75 427 186 539 4.65e-51 181
Msa1010200 AT3G12060.1 32.546 381 218 13 75 434 192 554 8.06e-51 180
Msa1010200 AT5G19160.1 30.022 453 268 14 2 427 22 452 1.79e-50 177
Msa1010200 AT5G06700.1 32.967 364 210 10 73 420 249 594 1.22e-49 178
Msa1010200 AT5G64470.3 30.337 356 218 8 79 420 55 394 3.68e-49 172
Msa1010200 AT5G64470.2 30.110 362 217 9 79 420 55 400 7.13e-48 169
Msa1010200 AT5G20590.1 30.663 362 220 10 76 423 138 482 1.65e-47 170
Msa1010200 AT3G62390.1 29.974 387 230 11 44 416 108 467 1.27e-46 167
Msa1010200 AT2G14530.1 29.008 393 228 13 54 420 39 406 1.64e-46 166
Msa1010200 AT5G06230.2 30.504 377 216 12 68 420 10 364 3.46e-45 161
Msa1010200 AT5G06230.1 30.504 377 216 12 68 420 51 405 5.84e-45 161
Msa1010200 AT2G30010.1 31.172 401 238 15 34 420 20 396 8.11e-44 158
Msa1010200 AT2G30010.2 31.172 401 238 15 34 420 63 439 1.50e-43 158
Msa1010200 AT3G11570.1 31.124 347 193 12 95 420 98 419 2.47e-42 155
Msa1010200 AT5G64020.1 29.032 372 214 11 79 420 57 408 5.98e-42 153
Msa1010200 AT5G49340.1 31.319 364 212 14 76 420 97 441 1.44e-41 153
Msa1010200 AT2G40320.1 30.252 357 223 11 77 420 79 422 9.48e-40 148
Msa1010200 AT2G40160.1 30.337 356 217 11 79 416 77 419 1.22e-39 147
Msa1010200 AT2G40160.2 30.337 356 217 11 79 416 77 419 1.24e-39 148
Msa1010200 AT2G30900.1 31.421 366 213 13 67 420 26 365 3.37e-39 145
Msa1010200 AT2G40150.1 27.865 384 248 10 47 416 48 416 3.79e-39 146
Msa1010200 AT3G55990.1 28.395 405 243 13 34 416 100 479 6.22e-39 147
Msa1010200 AT5G58600.1 29.444 360 211 12 79 420 66 400 9.03e-38 142
Msa1010200 AT5G19160.2 29.909 331 196 8 2 313 22 335 1.34e-37 140
Msa1010200 AT1G73140.1 28.610 374 228 9 60 420 58 405 1.77e-37 141
Msa1010200 AT5G01620.2 29.917 361 217 13 77 420 108 449 1.19e-36 140
Msa1010200 AT5G01620.1 29.917 361 217 13 77 420 108 449 1.19e-36 140
Msa1010200 AT5G01620.3 29.917 361 217 13 77 420 116 457 1.27e-36 140
Msa1010200 AT3G11030.1 29.132 357 224 11 79 420 106 448 1.55e-36 139
Msa1010200 AT2G34070.1 27.586 348 221 10 79 422 65 385 1.36e-35 135
Msa1010200 AT1G48880.1 27.536 414 254 16 27 426 64 445 2.72e-35 136
Msa1010200 AT1G29050.1 27.299 348 221 9 79 422 61 380 2.93e-35 134
Msa1010200 AT5G64470.1 30.147 272 166 6 79 336 55 316 3.51e-35 133
Msa1010200 AT5G01360.2 26.667 360 233 10 77 420 34 378 4.11e-35 134
Msa1010200 AT2G37720.1 27.200 375 211 13 76 420 140 482 7.71e-35 135
Msa1010200 AT5G01360.1 26.667 360 233 10 77 420 90 434 9.17e-35 134
Msa1010200 AT5G64470.4 29.889 271 166 6 79 335 55 315 1.27e-34 131
Msa1010200 AT3G14850.2 27.887 355 217 10 75 420 30 354 2.12e-34 132
Msa1010200 AT3G06080.1 33.735 249 139 7 79 313 103 339 4.09e-34 130
Msa1010200 AT2G38320.1 28.638 426 255 18 8 416 7 400 4.61e-34 132
Msa1010200 AT5G20680.6 25.316 395 219 12 63 420 102 457 7.95e-33 129
Msa1010200 AT5G20680.4 25.316 395 219 12 63 420 196 551 1.23e-32 130
Msa1010200 AT5G20680.1 25.316 395 219 12 63 420 196 551 1.23e-32 130
Msa1010200 AT5G20680.3 25.316 395 219 12 63 420 196 551 1.23e-32 130
Msa1010200 AT5G20680.5 25.316 395 219 12 63 420 196 551 1.23e-32 130
Msa1010200 AT5G20680.2 25.316 395 219 12 63 420 178 533 1.38e-32 129
Msa1010200 AT3G54260.1 27.056 377 229 11 63 425 35 379 4.06e-32 126
Msa1010200 AT2G42570.1 29.226 349 211 9 78 420 46 364 8.13e-32 125
Msa1010200 AT1G78710.1 28.729 362 197 13 78 420 37 356 1.31e-31 124
Msa1010200 AT5G20590.2 31.452 248 152 6 76 313 138 377 5.39e-30 120
Msa1010200 AT3G62390.2 28.772 285 172 8 44 315 108 374 2.49e-29 119
Msa1010200 AT2G31110.2 27.011 348 226 9 75 420 41 362 1.54e-28 115
Msa1010200 AT2G38320.2 29.321 324 200 13 109 416 7 317 6.13e-28 113
Msa1010200 AT2G40160.3 31.535 241 153 6 79 313 77 311 1.57e-27 112
Msa1010200 AT5G58600.2 28.523 298 189 8 24 312 7 289 2.55e-27 110
Msa1010200 AT5G06230.3 28.938 273 154 9 68 316 51 307 5.30e-27 110
Msa1010200 AT2G30900.2 34.031 191 110 5 67 250 26 207 3.33e-24 102
Msa1010200 AT1G78710.2 31.220 205 117 8 78 274 30 218 2.38e-18 85.5
Msa1010200 AT2G31110.3 29.545 176 115 4 78 253 44 210 8.53e-18 83.6
Msa1010200 AT2G34070.2 24.549 277 178 10 150 422 2 251 4.43e-14 72.4
Msa1010200 AT3G14850.1 25.000 276 168 10 150 416 2 247 1.07e-12 68.2

Find 107 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCATATTTCATACAATTT+TGG 0.163102 7_1:+12982535 None:intergenic
TCTTGATTTGGTCTAGATTA+TGG 0.187478 7_1:+12982987 None:intergenic
CATGCAGGTGGTAAAATCTT+AGG 0.211139 7_1:-12983121 None:intergenic
ATTGCTAGTAATGTTACTTT+TGG 0.238498 7_1:+12982795 None:intergenic
CACCAAAATTGTATGAAATA+TGG 0.265892 7_1:-12982537 Msa1010200:CDS
ATGATATAGTTCTCTTGATT+TGG 0.277015 7_1:+12982975 None:intergenic
TTAAGGGCATAACATTTCTT+AGG 0.279666 7_1:-12978439 Msa1010200:CDS
AAAATTCTTTAAATTATTGA+TGG 0.302379 7_1:+12978460 None:intergenic
TGTGTTTCATTGCTTCTAAA+TGG 0.304661 7_1:+12978350 None:intergenic
AGAGGCCATTGTGAAATTAT+AGG 0.307079 7_1:+12978763 None:intergenic
TTTGTGTAATATGGTGCTTT+TGG 0.316905 7_1:+12982585 None:intergenic
CAAGCTATGGAACTTCTCTT+TGG 0.318342 7_1:-12982843 Msa1010200:CDS
GATGAAGGATTTCTAAATAA+AGG 0.319542 7_1:+12982732 None:intergenic
AATTGTGAGGGGAAAATCTA+TGG 0.332595 7_1:-12982430 Msa1010200:CDS
GATGGGCACCCTAGTAAATA+TGG 0.352672 7_1:-12978197 Msa1010200:CDS
TGTGTGCATTGGTGCTTGCC+TGG 0.353744 7_1:-12978137 Msa1010200:CDS
CAGATTCTGATTACTTGAAA+TGG 0.357669 7_1:-12982509 Msa1010200:CDS
TCTAAAGAATCAGATTTAAA+AGG 0.364200 7_1:-12978716 Msa1010200:CDS
TTTGATTATGTTATTCTCAA+TGG 0.365612 7_1:-12978620 Msa1010200:CDS
CCATGGTACATGGTTAAATC+AGG 0.371275 7_1:+12978515 None:intergenic
TGAGAGTGTGATACAATTAC+GGG 0.372576 7_1:+12978818 None:intergenic
AAGCAATGAAACACAATTAG+AGG 0.374389 7_1:-12978342 Msa1010200:CDS
TTGAGAGTGTGATACAATTA+CGG 0.374668 7_1:+12978817 None:intergenic
CATTTCAAGTAATCAGAATC+TGG 0.377243 7_1:+12982510 None:intergenic
TTAAAAGGTCCAGGTTCAAC+TGG 0.378193 7_1:-12978701 Msa1010200:CDS
AAGAGTGACAAGAATAGAAA+AGG 0.386231 7_1:+12982884 None:intergenic
AAACATCACACCAATAATAT+AGG 0.393461 7_1:+12977941 None:intergenic
TTACAAGCTAGATGAAAATT+CGG 0.397770 7_1:+12977844 None:intergenic
ATCTATTATTAATGTATTCG+AGG 0.399923 7_1:+12983051 None:intergenic
TTCTTTAGATCTTACCAAAT+GGG 0.400274 7_1:+12978730 None:intergenic
ATAGGAAGCTCACAACCATT+AGG 0.405943 7_1:+12982477 None:intergenic
GAAAATGGGTTATGGAATCA+AGG 0.409487 7_1:-12978395 Msa1010200:CDS
TACAATGTCACATTCTCATT+AGG 0.411907 7_1:+12978167 None:intergenic
ATGAAGGATTTCTAAATAAA+GGG 0.415418 7_1:+12982733 None:intergenic
CTTGTTAGATATGTTGAAGA+TGG 0.416171 7_1:-12978090 Msa1010200:CDS
GGCCAATGTCCATATTTACT+AGG 0.417433 7_1:+12978188 None:intergenic
CCATGATTTGCCTACTATCA+AGG 0.419418 7_1:-12982368 Msa1010200:CDS
TATTTACTAGGGTGCCCATC+TGG 0.431629 7_1:+12978200 None:intergenic
GTATTCGAGGTTCTAGAGTA+AGG 0.433388 7_1:+12983064 None:intergenic
ATGGTTATAGAAGAGCATTT+AGG 0.434534 7_1:-12978496 Msa1010200:CDS
ATTCTTTAGATCTTACCAAA+TGG 0.442314 7_1:+12978729 None:intergenic
AAATGCAGTGGATGGTTGAT+TGG 0.444149 7_1:+12982689 None:intergenic
TGATGTGGTGGAAAGGTTTG+TGG 0.447890 7_1:+12977703 None:intergenic
ATGCAGGTGGTAAAATCTTA+GGG 0.448235 7_1:-12983120 None:intergenic
AAATCACTCCATGTGTCAAT+TGG 0.450630 7_1:+12978113 None:intergenic
CAAAGAGAAGTTCCATAGCT+TGG 0.453408 7_1:+12982844 None:intergenic
ATACATTAATAATAGATAGA+TGG 0.459514 7_1:-12983045 Msa1010200:five_prime_UTR
CTAAATGAAGTTCCAAGCTA+TGG 0.465970 7_1:-12982856 Msa1010200:exon
CCATTGTGAAATTATAGGTT+GGG 0.470799 7_1:+12978768 None:intergenic
CTAAATAAAGGGTAGGATAG+TGG 0.471242 7_1:+12982744 None:intergenic
CAAGAATAGAAAAGGGCATA+GGG 0.481517 7_1:+12982892 None:intergenic
CCTTGATAGTAGGCAAATCA+TGG 0.481934 7_1:+12982368 None:intergenic
TCTTCAGTGGAGATTACTTA+CGG 0.483769 7_1:+12977905 None:intergenic
TTACACAAATAAAACATGTT+GGG 0.484375 7_1:-12982571 Msa1010200:CDS
ACAATTTCAAGAAACTGAAA+AGG 0.484760 7_1:+12982447 None:intergenic
CTGATTACTTGAAATGGAAG+TGG 0.487031 7_1:-12982503 Msa1010200:CDS
AACTGAAAAGGATTGAATAT+AGG 0.487467 7_1:+12982459 None:intergenic
AAGCTAGATGAAAATTCGGC+TGG 0.490718 7_1:+12977848 None:intergenic
CAGTGGAGATTACTTACGGT+TGG 0.493157 7_1:+12977909 None:intergenic
TTCAGTTTCTTGAAATTGTG+AGG 0.497540 7_1:-12982443 Msa1010200:CDS
GAATCAGATTTAAAAGGTCC+AGG 0.503947 7_1:-12978710 Msa1010200:CDS
AAGAATCTGTGGGGCATACA+TGG 0.506563 7_1:-12977886 Msa1010200:three_prime_UTR
AGAGTGACAAGAATAGAAAA+GGG 0.507306 7_1:+12982885 None:intergenic
TCGAAGAGTCCAGTTGAACC+TGG 0.509975 7_1:+12978692 None:intergenic
GCCATTGTGAAATTATAGGT+TGG 0.510891 7_1:+12978767 None:intergenic
ATTACACAAATAAAACATGT+TGG 0.513699 7_1:-12982572 Msa1010200:CDS
ACATTGGTTTACAAGATCAA+TGG 0.514035 7_1:-12978594 Msa1010200:CDS
GCAACAATGTTGAGGCCAGA+TGG 0.516688 7_1:-12978215 Msa1010200:CDS
CTCCATGTGTCAATTGGTCC+AGG 0.518502 7_1:+12978119 None:intergenic
CAACAATGTTGAGGCCAGAT+GGG 0.527334 7_1:-12978214 Msa1010200:CDS
GAAGTGTTACCCTTGATAGT+AGG 0.530829 7_1:+12982358 None:intergenic
GCCAATGTCCATATTTACTA+GGG 0.531584 7_1:+12978189 None:intergenic
AAATGGAAGTGGAAACCTAA+TGG 0.533698 7_1:-12982492 Msa1010200:CDS
ATGGGTTATGGAATCAAGGT+GGG 0.542229 7_1:-12978391 Msa1010200:CDS
AAATCATCAAATGCAGTGGA+TGG 0.547828 7_1:+12982681 None:intergenic
TCTTTAGATCTTACCAAATG+GGG 0.553732 7_1:+12978731 None:intergenic
GTTAGATATGTTGAAGATGG+AGG 0.553797 7_1:-12978087 Msa1010200:CDS
TCAGTTTCTTGAAATTGTGA+GGG 0.555588 7_1:-12982442 Msa1010200:CDS
ATTTAAATCATCAAATGCAG+TGG 0.560828 7_1:+12982677 None:intergenic
CATGATTTGCCTACTATCAA+GGG 0.561143 7_1:-12982367 Msa1010200:intron
TAAATGCTCTTCTATAACCA+TGG 0.564995 7_1:+12978498 None:intergenic
ACAAGAATAGAAAAGGGCAT+AGG 0.566263 7_1:+12982891 None:intergenic
TCTTCTATAACCATGGTACA+TGG 0.570506 7_1:+12978505 None:intergenic
TTATTCTCAATGGAGGACAT+TGG 0.571639 7_1:-12978610 Msa1010200:CDS
AATCTCCACTGAAGAATCTG+TGG 0.574941 7_1:-12977897 Msa1010200:three_prime_UTR
TGTATAATGATTGTGTGCAT+TGG 0.576508 7_1:-12978148 Msa1010200:CDS
AGCAATGAAACACAATTAGA+GGG 0.580001 7_1:-12978341 Msa1010200:CDS
ATCTCCACTGAAGAATCTGT+GGG 0.580350 7_1:-12977896 Msa1010200:three_prime_UTR
TATTCGAGGTTCTAGAGTAA+GGG 0.582974 7_1:+12983065 None:intergenic
CATGGTACATGGTTAAATCA+GGG 0.583701 7_1:+12978516 None:intergenic
GATTATGTTATTCTCAATGG+AGG 0.586018 7_1:-12978617 Msa1010200:CDS
AGGATTTCTAAATAAAGGGT+AGG 0.589350 7_1:+12982737 None:intergenic
CAGTTTCTTGAAATTGTGAG+GGG 0.593200 7_1:-12982441 Msa1010200:CDS
GGAGATTACTTACGGTTGGA+CGG 0.594002 7_1:+12977913 None:intergenic
AGCTAGATGAAAATTCGGCT+GGG 0.594972 7_1:+12977849 None:intergenic
ACCCTAGTAAATATGGACAT+TGG 0.627120 7_1:-12978190 Msa1010200:CDS
TTAGATATGTTGAAGATGGA+GGG 0.636258 7_1:-12978086 Msa1010200:CDS
AATGGGTTATGGAATCAAGG+TGG 0.651885 7_1:-12978392 Msa1010200:CDS
GCATAGGGGATGAAGACTTG+TGG 0.654321 7_1:+12982907 None:intergenic
AAAATGATTATTTCATGACG+TGG 0.654793 7_1:-12978796 Msa1010200:CDS
AAGAATAGAAAAGGGCATAG+GGG 0.658791 7_1:+12982893 None:intergenic
CAACACAAGCAACAATGTTG+AGG 0.661127 7_1:-12978223 Msa1010200:CDS
CCTGATTTAACCATGTACCA+TGG 0.663940 7_1:-12978515 Msa1010200:CDS
CCCAACCTATAATTTCACAA+TGG 0.671699 7_1:-12978768 Msa1010200:CDS
TGCCTGGACCAATTGACACA+TGG 0.672835 7_1:-12978121 Msa1010200:CDS
ATGCCCCACAGATTCTTCAG+TGG 0.706493 7_1:+12977892 None:intergenic
TCTCCACTGAAGAATCTGTG+GGG 0.770861 7_1:-12977895 Msa1010200:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATTTATTAAAGTATTGT+TGG + chr7_1:12978756-12978775 None:intergenic 10.0%
!!! AATAATTTAAAATAAAAGCA+AGG - chr7_1:12978770-12978789 Msa1010200:CDS 10.0%
!!! ATAATTTAAAATAAAAGCAA+GGG - chr7_1:12978771-12978790 Msa1010200:CDS 10.0%
!!! ACAAAATTTATAAATTTTCT+AGG - chr7_1:12978997-12979016 Msa1010200:intron 10.0%
!! AAAATATTAATTATTGCTTA+GGG + chr7_1:12979244-12979263 None:intergenic 10.0%
!! AAAAATATTAATTATTGCTT+AGG + chr7_1:12979245-12979264 None:intergenic 10.0%
!! TTAAATTACAAATTCTAATA+TGG + chr7_1:12980019-12980038 None:intergenic 10.0%
!!! TTTGCTAATATTTTATATAA+TGG - chr7_1:12980269-12980288 Msa1010200:intron 10.0%
!!! TTGCTAATATTTTATATAAT+GGG - chr7_1:12980270-12980289 Msa1010200:intron 10.0%
!! ACAAATAAAATAAAATCATA+CGG - chr7_1:12980419-12980438 Msa1010200:intron 10.0%
!!! AACTATAATTTTTTAATTAG+GGG - chr7_1:12981474-12981493 Msa1010200:intron 10.0%
!! GATATTAAAAGATAAATTAA+AGG + chr7_1:12981717-12981736 None:intergenic 10.0%
!! AAAATTCTTTAAATTATTGA+TGG + chr7_1:12982370-12982389 None:intergenic 10.0%
!!! CAATAATTTAAAGAATTTTA+AGG - chr7_1:12982371-12982390 Msa1010200:CDS 10.0%
!!! TATCAATTTTATATGTAATT+TGG - chr7_1:12982843-12982862 Msa1010200:CDS 10.0%
!!! TTATTTTTTTCCTATATTAT+TGG - chr7_1:12982876-12982895 Msa1010200:five_prime_UTR 10.0%
!! ATACATTAATAATAGATAGA+TGG - chr7_1:12977782-12977801 Msa1010200:three_prime_UTR 15.0%
!!! TAGTATCAAATTTTGAATTA+AGG + chr7_1:12978697-12978716 None:intergenic 15.0%
!! TATAAAGTAGTAATTAATGA+TGG + chr7_1:12979323-12979342 None:intergenic 15.0%
!!! ATCTTATGTTTTATTTTTGA+CGG + chr7_1:12979622-12979641 None:intergenic 15.0%
!! TCAAATAAAATTAATGTGAT+GGG + chr7_1:12979940-12979959 None:intergenic 15.0%
!!! TAATATGGTTCAAATTTTTA+GGG + chr7_1:12980004-12980023 None:intergenic 15.0%
!! ATATAAAACTACAAAAAGAT+GGG + chr7_1:12980314-12980333 None:intergenic 15.0%
!!! AAACATTTTTAATGATTTTG+TGG + chr7_1:12980729-12980748 None:intergenic 15.0%
!! GATTAAATTTCTTATATTGT+TGG + chr7_1:12980817-12980836 None:intergenic 15.0%
!! ATCTAAATAAAATAATTGAG+TGG + chr7_1:12980957-12980976 None:intergenic 15.0%
!! TTTAGATAGATATGTATTAT+TGG - chr7_1:12980978-12980997 Msa1010200:intron 15.0%
!! ATAAAATAATTTGAAAAGCT+TGG - chr7_1:12981208-12981227 Msa1010200:intron 15.0%
!! ATTAAATCTTGATTAAATCT+TGG + chr7_1:12981610-12981629 None:intergenic 15.0%
!! AGATTTAATCAAGATTTAAT+CGG - chr7_1:12981610-12981629 Msa1010200:intron 15.0%
!!! TATATCATGGTTTATATTTT+TGG - chr7_1:12981871-12981890 Msa1010200:intron 15.0%
!! TTGTGTTAATACTAATTATA+AGG + chr7_1:12981944-12981963 None:intergenic 15.0%
!! AATAATAAAGATTAAGCAAA+AGG + chr7_1:12981975-12981994 None:intergenic 15.0%
!! ATCTATTATTAATGTATTCG+AGG + chr7_1:12977779-12977798 None:intergenic 20.0%
!! ATGAAGGATTTCTAAATAAA+GGG + chr7_1:12978097-12978116 None:intergenic 20.0%
!!! GGTTTTTTTAATGTTTTTCA+AGG + chr7_1:12978120-12978139 None:intergenic 20.0%
!!! CATGTTTTATTTGTGTAATA+TGG + chr7_1:12978254-12978273 None:intergenic 20.0%
!! ATTACACAAATAAAACATGT+TGG - chr7_1:12978255-12978274 Msa1010200:CDS 20.0%
!! TTACACAAATAAAACATGTT+GGG - chr7_1:12978256-12978275 Msa1010200:CDS 20.0%
!!! TTCCATATTTCATACAATTT+TGG + chr7_1:12978295-12978314 None:intergenic 20.0%
!! TTAAACATTGAAAATGTCAA+AGG + chr7_1:12978497-12978516 None:intergenic 20.0%
!! TTGTTGAAATTTCAAAGTAT+AGG - chr7_1:12978536-12978555 Msa1010200:CDS 20.0%
!! TTTGAATTAAGGTAATCTAA+AGG + chr7_1:12978686-12978705 None:intergenic 20.0%
!!! TTTTTTGTTGTTGAAGTATT+TGG - chr7_1:12979263-12979282 Msa1010200:intron 20.0%
!!! TTTTTCTAGTTTTGAAATCA+TGG + chr7_1:12979296-12979315 None:intergenic 20.0%
!! TTTATAAGTTTCAATGTAAG+TGG - chr7_1:12979337-12979356 Msa1010200:intron 20.0%
!! TATCATACATGTGAAAATAT+GGG - chr7_1:12979660-12979679 Msa1010200:intron 20.0%
!! ATTTATTTACCTAATACGAT+TGG + chr7_1:12979831-12979850 None:intergenic 20.0%
!! TAGGTAAATAAATCATCAAA+TGG - chr7_1:12979838-12979857 Msa1010200:intron 20.0%
!! GTCAAATAAAATTAATGTGA+TGG + chr7_1:12979941-12979960 None:intergenic 20.0%
!!! CTAATATGGTTCAAATTTTT+AGG + chr7_1:12980005-12980024 None:intergenic 20.0%
!! GATATAAAACTACAAAAAGA+TGG + chr7_1:12980315-12980334 None:intergenic 20.0%
!! CTAAACCAAAATAATAGAAA+CGG - chr7_1:12980529-12980548 Msa1010200:intron 20.0%
!!! TTGCTTATTTTTCTACTTTA+AGG + chr7_1:12980570-12980589 None:intergenic 20.0%
!!! TAATGCAATATTAATTTGCA+TGG - chr7_1:12980856-12980875 Msa1010200:intron 20.0%
!! ACTAATTAACACTAATTATG+TGG + chr7_1:12980902-12980921 None:intergenic 20.0%
!!! TTAGTGTTAATTAGTTTGAA+AGG - chr7_1:12980907-12980926 Msa1010200:intron 20.0%
!!! TTTTTTTTTCCTTTTCACTT+GGG - chr7_1:12981110-12981129 Msa1010200:intron 20.0%
!! ATGGCTTAAAATAATAAAGT+AGG - chr7_1:12981144-12981163 Msa1010200:intron 20.0%
!! AAATAATAAAGTAGGCTAAA+AGG - chr7_1:12981152-12981171 Msa1010200:intron 20.0%
!!! TATAATTTTTTAATTAGGGG+TGG - chr7_1:12981477-12981496 Msa1010200:intron 20.0%
!! TTTAAAAGAAGAAAAGCTTA+AGG + chr7_1:12981800-12981819 None:intergenic 20.0%
!!! AAGCTTTTCTTCTTTTAAAA+TGG - chr7_1:12981801-12981820 Msa1010200:intron 20.0%
!!! GCATTTACTTTTATATATCA+TGG - chr7_1:12981858-12981877 Msa1010200:intron 20.0%
!!! TTTTGGTAGATTATATTGTA+TGG - chr7_1:12981888-12981907 Msa1010200:intron 20.0%
!!! GCTTAATCTTTATTATTTTC+AGG - chr7_1:12981978-12981997 Msa1010200:intron 20.0%
!!! TAATCTTTATTATTTTCAGG+TGG - chr7_1:12981981-12982000 Msa1010200:intron 20.0%
!! TCTAAAGAATCAGATTTAAA+AGG - chr7_1:12982111-12982130 Msa1010200:intron 20.0%
!! TTTGATTATGTTATTCTCAA+TGG - chr7_1:12982207-12982226 Msa1010200:intron 20.0%
!!! AGAGTTTTATATGATTCAAT+TGG - chr7_1:12982518-12982537 Msa1010200:CDS 20.0%
! ATGATATAGTTCTCTTGATT+TGG + chr7_1:12977855-12977874 None:intergenic 25.0%
!!! ACTTTTGGAATCATTTGTTT+TGG + chr7_1:12978020-12978039 None:intergenic 25.0%
!!! ATTGCTAGTAATGTTACTTT+TGG + chr7_1:12978035-12978054 None:intergenic 25.0%
! GATGAAGGATTTCTAAATAA+AGG + chr7_1:12978098-12978117 None:intergenic 25.0%
!!! TTAATGTTTTTCAAGGATGA+AGG + chr7_1:12978113-12978132 None:intergenic 25.0%
! ATTTAAATCATCAAATGCAG+TGG + chr7_1:12978153-12978172 None:intergenic 25.0%
!!! CACTTTTTTATAGAAGTTGA+AGG + chr7_1:12978191-12978210 None:intergenic 25.0%
!!! AAAAAGTGTGACATTTTTAC+AGG - chr7_1:12978203-12978222 Msa1010200:CDS 25.0%
! CACCAAAATTGTATGAAATA+TGG - chr7_1:12978290-12978309 Msa1010200:CDS 25.0%
! AACTGAAAAGGATTGAATAT+AGG + chr7_1:12978371-12978390 None:intergenic 25.0%
! ACAATTTCAAGAAACTGAAA+AGG + chr7_1:12978383-12978402 None:intergenic 25.0%
!! AGATACAAAGAGTATATTTC+TGG + chr7_1:12978607-12978626 None:intergenic 25.0%
!!! ATTTCTTTTGAGAAATAGAG+TGG - chr7_1:12978651-12978670 Msa1010200:CDS 25.0%
! ACACATAAATCAAAGATCTA+GGG + chr7_1:12979079-12979098 None:intergenic 25.0%
! TACACATAAATCAAAGATCT+AGG + chr7_1:12979080-12979099 None:intergenic 25.0%
!! GGTGAGATATTTTATGTTTT+CGG + chr7_1:12979601-12979620 None:intergenic 25.0%
! GTATCATACATGTGAAAATA+TGG - chr7_1:12979659-12979678 Msa1010200:intron 25.0%
! ATAAACTTAAGTGCAAGTTT+AGG + chr7_1:12980194-12980213 None:intergenic 25.0%
!! TATTCCTACTAATTTGCATA+TGG - chr7_1:12980354-12980373 Msa1010200:intron 25.0%
!!! ATTTTAGGTTCATTCTCATA+TGG + chr7_1:12980470-12980489 None:intergenic 25.0%
!!! GTTTTTTTTTCCTTTTCACT+TGG - chr7_1:12981109-12981128 Msa1010200:intron 25.0%
! GATATATAAAAGTAAATGCG+TGG + chr7_1:12981857-12981876 None:intergenic 25.0%
!!! TTTATTATTTTCAGGTGGAA+TGG - chr7_1:12981986-12982005 Msa1010200:intron 25.0%
! AAAATGATTATTTCATGACG+TGG - chr7_1:12982031-12982050 Msa1010200:intron 25.0%
! TTCTTTAGATCTTACCAAAT+GGG + chr7_1:12982100-12982119 None:intergenic 25.0%
! ATTCTTTAGATCTTACCAAA+TGG + chr7_1:12982101-12982120 None:intergenic 25.0%
! TACGAGAAACAAAAAATTGT+TGG - chr7_1:12982261-12982280 Msa1010200:intron 25.0%
! TGAAAAAGAAGCAAGAAAAA+AGG - chr7_1:12982557-12982576 Msa1010200:CDS 25.0%
! GAAAAAGAAGCAAGAAAAAA+GGG - chr7_1:12982558-12982577 Msa1010200:CDS 25.0%
!! GAAAAAAGGGTTTGAAATTT+AGG - chr7_1:12982571-12982590 Msa1010200:CDS 25.0%
! AAACATCACACCAATAATAT+AGG + chr7_1:12982889-12982908 None:intergenic 25.0%
! TTACAAGCTAGATGAAAATT+CGG + chr7_1:12982986-12983005 None:intergenic 25.0%
!! TCTTGATTTGGTCTAGATTA+TGG + chr7_1:12977843-12977862 None:intergenic 30.0%
AGAGTGACAAGAATAGAAAA+GGG + chr7_1:12977945-12977964 None:intergenic 30.0%
AAGAGTGACAAGAATAGAAA+AGG + chr7_1:12977946-12977965 None:intergenic 30.0%
AGGATTTCTAAATAAAGGGT+AGG + chr7_1:12978093-12978112 None:intergenic 30.0%
! TAATATGGTGCTTTTGGATT+TGG + chr7_1:12978239-12978258 None:intergenic 30.0%
! TTTGTGTAATATGGTGCTTT+TGG + chr7_1:12978245-12978264 None:intergenic 30.0%
! CATTTCAAGTAATCAGAATC+TGG + chr7_1:12978320-12978339 None:intergenic 30.0%
CAGATTCTGATTACTTGAAA+TGG - chr7_1:12978318-12978337 Msa1010200:CDS 30.0%
TTCAGTTTCTTGAAATTGTG+AGG - chr7_1:12978384-12978403 Msa1010200:CDS 30.0%
TCAGTTTCTTGAAATTGTGA+GGG - chr7_1:12978385-12978404 Msa1010200:CDS 30.0%
TTAAGGTAATCTAAAGGTGA+TGG + chr7_1:12978680-12978699 None:intergenic 30.0%
! TATTGTTGGCACTGAATTTA+AGG + chr7_1:12978742-12978761 None:intergenic 30.0%
CACATAAATCAAAGATCTAG+GGG + chr7_1:12979078-12979097 None:intergenic 30.0%
!! GACAAAAGGGGTATAATTTT+AGG + chr7_1:12979222-12979241 None:intergenic 30.0%
ATTATTGCTTAGGGACAAAA+GGG + chr7_1:12979235-12979254 None:intergenic 30.0%
AATTATTGCTTAGGGACAAA+AGG + chr7_1:12979236-12979255 None:intergenic 30.0%
ATACGATTGGATCGAATTAT+GGG + chr7_1:12979818-12979837 None:intergenic 30.0%
AATACGATTGGATCGAATTA+TGG + chr7_1:12979819-12979838 None:intergenic 30.0%
TAATTCGATCCAATCGTATT+AGG - chr7_1:12979819-12979838 Msa1010200:intron 30.0%
AATGTCCATATGCATTTCAA+AGG - chr7_1:12979888-12979907 Msa1010200:intron 30.0%
!! AGATTCCTTTGAAATGCATA+TGG + chr7_1:12979896-12979915 None:intergenic 30.0%
TTAGGGTTTATAATTTCACG+TGG + chr7_1:12979987-12980006 None:intergenic 30.0%
TAGTCAAGCATTTGAATTAG+TGG + chr7_1:12980092-12980111 None:intergenic 30.0%
TCAAGTCTAGTAATTCAAAG+AGG + chr7_1:12980165-12980184 None:intergenic 30.0%
ATGGGAAATAAAACACAAGA+TGG - chr7_1:12980288-12980307 Msa1010200:intron 30.0%
TTAGCCATATGCAAATTAGT+AGG + chr7_1:12980361-12980380 None:intergenic 30.0%
CAAACATATAGTATCAACCA+AGG + chr7_1:12980386-12980405 None:intergenic 30.0%
! CTCAACCGTTTCTATTATTT+TGG + chr7_1:12980537-12980556 None:intergenic 30.0%
AAATAATAGAAACGGTTGAG+AGG - chr7_1:12980537-12980556 Msa1010200:intron 30.0%
TACTACTACTATCAATGCAA+AGG - chr7_1:12980677-12980696 Msa1010200:intron 30.0%
ATCAATGCAAAGGTTTACTA+TGG - chr7_1:12980687-12980706 Msa1010200:intron 30.0%
!! GCAATATTAATTTGCATGGA+AGG - chr7_1:12980860-12980879 Msa1010200:intron 30.0%
ATGGAAGGAAATGAAAACAA+AGG - chr7_1:12980875-12980894 Msa1010200:intron 30.0%
ATCATATTGTGTGTCTTATG+CGG - chr7_1:12981024-12981043 Msa1010200:intron 30.0%
ATGTAAACAATACTATGTGC+TGG - chr7_1:12981057-12981076 Msa1010200:intron 30.0%
ATAAAGTAGGCTAAAAGGAA+TGG - chr7_1:12981157-12981176 Msa1010200:intron 30.0%
GCTAAAAGGAATGGTTTAAA+AGG - chr7_1:12981166-12981185 Msa1010200:intron 30.0%
GAGCAATACTAATTTGAAAG+TGG - chr7_1:12981280-12981299 Msa1010200:intron 30.0%
! TGAAAGTGGTGTATTTGTTT+TGG - chr7_1:12981294-12981313 Msa1010200:intron 30.0%
AAAAGCTTAAGGAAATGCTT+CGG + chr7_1:12981789-12981808 None:intergenic 30.0%
GGTAGATTATATTGTATGGT+TGG - chr7_1:12981892-12981911 Msa1010200:intron 30.0%
! TTGAGAGTGTGATACAATTA+CGG + chr7_1:12982013-12982032 None:intergenic 30.0%
CCATTGTGAAATTATAGGTT+GGG + chr7_1:12982062-12982081 None:intergenic 30.0%
TCTTTAGATCTTACCAAATG+GGG + chr7_1:12982099-12982118 None:intergenic 30.0%
!! TGAGTTATCCATTTTTCATC+TGG + chr7_1:12982177-12982196 None:intergenic 30.0%
GATTATGTTATTCTCAATGG+AGG - chr7_1:12982210-12982229 Msa1010200:intron 30.0%
!! ACATTGGTTTACAAGATCAA+TGG - chr7_1:12982233-12982252 Msa1010200:intron 30.0%
TAAATGCTCTTCTATAACCA+TGG + chr7_1:12982332-12982351 None:intergenic 30.0%
!! ATGGTTATAGAAGAGCATTT+AGG - chr7_1:12982331-12982350 Msa1010200:intron 30.0%
! TTAAGGGCATAACATTTCTT+AGG - chr7_1:12982388-12982407 Msa1010200:CDS 30.0%
!! TCACCATCACATTTTGAAAA+TGG - chr7_1:12982417-12982436 Msa1010200:CDS 30.0%
!! CACCATCACATTTTGAAAAT+GGG - chr7_1:12982418-12982437 Msa1010200:CDS 30.0%
! AACCCATTTTCAAAATGTGA+TGG + chr7_1:12982423-12982442 None:intergenic 30.0%
!!! CACATTTTGAAAATGGGTTA+TGG - chr7_1:12982424-12982443 Msa1010200:CDS 30.0%
TGTGTTTCATTGCTTCTAAA+TGG + chr7_1:12982480-12982499 None:intergenic 30.0%
AAGCAATGAAACACAATTAG+AGG - chr7_1:12982485-12982504 Msa1010200:CDS 30.0%
AGCAATGAAACACAATTAGA+GGG - chr7_1:12982486-12982505 Msa1010200:CDS 30.0%
TACAATGTCACATTCTCATT+AGG + chr7_1:12982663-12982682 None:intergenic 30.0%
TGTATAATGATTGTGTGCAT+TGG - chr7_1:12982679-12982698 Msa1010200:CDS 30.0%
CTTGTTAGATATGTTGAAGA+TGG - chr7_1:12982737-12982756 Msa1010200:CDS 30.0%
TTAGATATGTTGAAGATGGA+GGG - chr7_1:12982741-12982760 Msa1010200:CDS 30.0%
!! TATTCGAGGTTCTAGAGTAA+GGG + chr7_1:12977765-12977784 None:intergenic 35.0%
! AAGAATAGAAAAGGGCATAG+GGG + chr7_1:12977937-12977956 None:intergenic 35.0%
! CAAGAATAGAAAAGGGCATA+GGG + chr7_1:12977938-12977957 None:intergenic 35.0%
! ACAAGAATAGAAAAGGGCAT+AGG + chr7_1:12977939-12977958 None:intergenic 35.0%
CTAAATGAAGTTCCAAGCTA+TGG - chr7_1:12977971-12977990 Msa1010200:three_prime_UTR 35.0%
CTAAATAAAGGGTAGGATAG+TGG + chr7_1:12978086-12978105 None:intergenic 35.0%
AAATCATCAAATGCAGTGGA+TGG + chr7_1:12978149-12978168 None:intergenic 35.0%
! TGACATTTTTACAGGTGAGT+GGG - chr7_1:12978211-12978230 Msa1010200:CDS 35.0%
CTGATTACTTGAAATGGAAG+TGG - chr7_1:12978324-12978343 Msa1010200:CDS 35.0%
AAATGGAAGTGGAAACCTAA+TGG - chr7_1:12978335-12978354 Msa1010200:CDS 35.0%
CAGTTTCTTGAAATTGTGAG+GGG - chr7_1:12978386-12978405 Msa1010200:CDS 35.0%
AATTGTGAGGGGAAAATCTA+TGG - chr7_1:12978397-12978416 Msa1010200:CDS 35.0%
! GGAAAATCTATGGCTTTTGT+TGG - chr7_1:12978407-12978426 Msa1010200:CDS 35.0%
! CATGATTTGCCTACTATCAA+GGG - chr7_1:12978460-12978479 Msa1010200:CDS 35.0%
!!! TGGAACACTATGGCTTTTTT+AGG + chr7_1:12979197-12979216 None:intergenic 35.0%
! ATTTTAGGCTTGGAACACTA+TGG + chr7_1:12979207-12979226 None:intergenic 35.0%
!! AAGGGGTATAATTTTAGGCT+TGG + chr7_1:12979217-12979236 None:intergenic 35.0%
TTATTGCTTAGGGACAAAAG+GGG + chr7_1:12979234-12979253 None:intergenic 35.0%
! AGACCAAAGACAAAGACTTT+TGG + chr7_1:12979739-12979758 None:intergenic 35.0%
!! TCTTTGTCTTTGGTCTTGTT+TGG - chr7_1:12979743-12979762 Msa1010200:intron 35.0%
CATTAGGAAGATGGCAAAAT+AGG + chr7_1:12979775-12979794 None:intergenic 35.0%
! CTATTTTGCCATCTTCCTAA+TGG - chr7_1:12979773-12979792 Msa1010200:intron 35.0%
!! ATAATTTCACGTGGTGGATA+AGG + chr7_1:12979978-12979997 None:intergenic 35.0%
TAATGCAACAAATTCACCGT+TGG - chr7_1:12980036-12980055 Msa1010200:intron 35.0%
ACAAATTCACCGTTGGATTA+AGG - chr7_1:12980043-12980062 Msa1010200:intron 35.0%
!! TTTTGAGAGCCTTAATCCAA+CGG + chr7_1:12980055-12980074 None:intergenic 35.0%
AGTCTAGTAATTCAAAGAGG+AGG + chr7_1:12980162-12980181 None:intergenic 35.0%
!! AACTGTTCTAGTTTGTGGTT+TGG + chr7_1:12980235-12980254 None:intergenic 35.0%
!! TTCTCAACTGTTCTAGTTTG+TGG + chr7_1:12980240-12980259 None:intergenic 35.0%
TGAACCTAAAATTAGCCAAG+AGG - chr7_1:12980478-12980497 Msa1010200:intron 35.0%
TTCCAAGTTTGTAACATGCA+TGG - chr7_1:12981083-12981102 Msa1010200:intron 35.0%
AAGTTTGTAACATGCATGGA+GGG - chr7_1:12981087-12981106 Msa1010200:intron 35.0%
! TTTTCTGTTCCCAAGTGAAA+AGG + chr7_1:12981122-12981141 None:intergenic 35.0%
!!! TGGCTCAAGTTTTAGTTTCA+AGG - chr7_1:12981228-12981247 Msa1010200:intron 35.0%
!!! ATTTTTTAATTAGGGGTGGC+AGG - chr7_1:12981481-12981500 Msa1010200:intron 35.0%
! TGAGAGTGTGATACAATTAC+GGG + chr7_1:12982012-12982031 None:intergenic 35.0%
CCCAACCTATAATTTCACAA+TGG - chr7_1:12982059-12982078 Msa1010200:intron 35.0%
GCCATTGTGAAATTATAGGT+TGG + chr7_1:12982063-12982082 None:intergenic 35.0%
AGAGGCCATTGTGAAATTAT+AGG + chr7_1:12982067-12982086 None:intergenic 35.0%
! ATTTCACAATGGCCTCTTTT+TGG - chr7_1:12982070-12982089 Msa1010200:intron 35.0%
GAATCAGATTTAAAAGGTCC+AGG - chr7_1:12982117-12982136 Msa1010200:intron 35.0%
TTGATGAGCCAGATGAAAAA+TGG - chr7_1:12982166-12982185 Msa1010200:intron 35.0%
TTATTCTCAATGGAGGACAT+TGG - chr7_1:12982217-12982236 Msa1010200:intron 35.0%
CATGGTACATGGTTAAATCA+GGG + chr7_1:12982314-12982333 None:intergenic 35.0%
TCTTCTATAACCATGGTACA+TGG + chr7_1:12982325-12982344 None:intergenic 35.0%
!! GAAAATGGGTTATGGAATCA+AGG - chr7_1:12982432-12982451 Msa1010200:CDS 35.0%
ACCCTAGTAAATATGGACAT+TGG - chr7_1:12982637-12982656 Msa1010200:CDS 35.0%
GCCAATGTCCATATTTACTA+GGG + chr7_1:12982641-12982660 None:intergenic 35.0%
AAATCACTCCATGTGTCAAT+TGG + chr7_1:12982717-12982736 None:intergenic 35.0%
GTTAGATATGTTGAAGATGG+AGG - chr7_1:12982740-12982759 Msa1010200:CDS 35.0%
TCTTCAGTGGAGATTACTTA+CGG + chr7_1:12982925-12982944 None:intergenic 35.0%
!! GTATTCGAGGTTCTAGAGTA+AGG + chr7_1:12977766-12977785 None:intergenic 40.0%
CAAAGAGAAGTTCCATAGCT+TGG + chr7_1:12977986-12978005 None:intergenic 40.0%
CAAGCTATGGAACTTCTCTT+TGG - chr7_1:12977984-12978003 Msa1010200:three_prime_UTR 40.0%
AAATGCAGTGGATGGTTGAT+TGG + chr7_1:12978141-12978160 None:intergenic 40.0%
! GTGACATTTTTACAGGTGAG+TGG - chr7_1:12978210-12978229 Msa1010200:CDS 40.0%
ATAGGAAGCTCACAACCATT+AGG + chr7_1:12978353-12978372 None:intergenic 40.0%
! CCTTGATAGTAGGCAAATCA+TGG + chr7_1:12978462-12978481 None:intergenic 40.0%
! CCATGATTTGCCTACTATCA+AGG - chr7_1:12978459-12978478 Msa1010200:CDS 40.0%
! GAAGTGTTACCCTTGATAGT+AGG + chr7_1:12978472-12978491 None:intergenic 40.0%
GAGCAAAGACAATATACAGC+TGG + chr7_1:12979717-12979736 None:intergenic 40.0%
GCTCCAAAAGTCTTTGTCTT+TGG - chr7_1:12979733-12979752 Msa1010200:intron 40.0%
TTGGATCGAATTATGGGCTT+AGG + chr7_1:12979812-12979831 None:intergenic 40.0%
GGGTTTATAATTTCACGTGG+TGG + chr7_1:12979984-12980003 None:intergenic 40.0%
TTTGCATATGGCTAAGTCCT+TGG - chr7_1:12980366-12980385 Msa1010200:intron 40.0%
! GAAGCCTCTTGGCTAATTTT+AGG + chr7_1:12980485-12980504 None:intergenic 40.0%
CGTTAATAGTTGAAGCCTCT+TGG + chr7_1:12980496-12980515 None:intergenic 40.0%
GAATCCTAGATGTTACGTGA+GGG - chr7_1:12980929-12980948 Msa1010200:intron 40.0%
AATCCTAGATGTTACGTGAG+GGG - chr7_1:12980930-12980949 Msa1010200:intron 40.0%
CTCCATGCATGTTACAAACT+TGG + chr7_1:12981088-12981107 None:intergenic 40.0%
CAAGTTTGTAACATGCATGG+AGG - chr7_1:12981086-12981105 Msa1010200:intron 40.0%
AGGTTCTACAGTACCTAGAT+TGG - chr7_1:12981248-12981267 Msa1010200:intron 40.0%
GGTTCTACAGTACCTAGATT+GGG - chr7_1:12981249-12981268 Msa1010200:intron 40.0%
!!! GCTCTCTTTTTTCCCAATCT+AGG + chr7_1:12981264-12981283 None:intergenic 40.0%
!!! GTGGTGTATTTGTTTTGGAG+TGG - chr7_1:12981299-12981318 Msa1010200:intron 40.0%
AAGGAAATGCTTCGGTTGTT+TGG + chr7_1:12981781-12981800 None:intergenic 40.0%
TTAAAAGGTCCAGGTTCAAC+TGG - chr7_1:12982126-12982145 Msa1010200:intron 40.0%
CCATGGTACATGGTTAAATC+AGG + chr7_1:12982315-12982334 None:intergenic 40.0%
CCTGATTTAACCATGTACCA+TGG - chr7_1:12982312-12982331 Msa1010200:intron 40.0%
!! AATGGGTTATGGAATCAAGG+TGG - chr7_1:12982435-12982454 Msa1010200:CDS 40.0%
! ATGGGTTATGGAATCAAGGT+GGG - chr7_1:12982436-12982455 Msa1010200:CDS 40.0%
CAACACAAGCAACAATGTTG+AGG - chr7_1:12982604-12982623 Msa1010200:CDS 40.0%
GGCCAATGTCCATATTTACT+AGG + chr7_1:12982642-12982661 None:intergenic 40.0%
AATCTCCACTGAAGAATCTG+TGG - chr7_1:12982930-12982949 Msa1010200:five_prime_UTR 40.0%
ATCTCCACTGAAGAATCTGT+GGG - chr7_1:12982931-12982950 Msa1010200:five_prime_UTR 40.0%
AGCTAGATGAAAATTCGGCT+GGG + chr7_1:12982981-12983000 None:intergenic 40.0%
AAGCTAGATGAAAATTCGGC+TGG + chr7_1:12982982-12983001 None:intergenic 40.0%
! GCTTTTGTTGGAGACTCAGT+TGG - chr7_1:12978419-12978438 Msa1010200:CDS 45.0%
TTGCCATCTTCCTAATGGCA+TGG - chr7_1:12979778-12979797 Msa1010200:intron 45.0%
CAACCATGCCATTAGGAAGA+TGG + chr7_1:12979784-12979803 None:intergenic 45.0%
CATCTTCCTAATGGCATGGT+TGG - chr7_1:12979782-12979801 Msa1010200:intron 45.0%
!! TGTGATGGGCACACTTATCA+GGG + chr7_1:12979926-12979945 None:intergenic 45.0%
!! ATGTGATGGGCACACTTATC+AGG + chr7_1:12979927-12979946 None:intergenic 45.0%
CTTGATGTGACGACTAGTGT+TGG - chr7_1:12980615-12980634 Msa1010200:intron 45.0%
GGAATCCTAGATGTTACGTG+AGG - chr7_1:12980928-12980947 Msa1010200:intron 45.0%
CACTTGGGAACAGAAAAGCA+TGG - chr7_1:12981125-12981144 Msa1010200:intron 45.0%
CAAATGGGGAGTCCAAAAAG+AGG + chr7_1:12982085-12982104 None:intergenic 45.0%
! CTCTTTTTGGACTCCCCATT+TGG - chr7_1:12982083-12982102 Msa1010200:intron 45.0%
CAACAATGTTGAGGCCAGAT+GGG - chr7_1:12982613-12982632 Msa1010200:CDS 45.0%
! TATTTACTAGGGTGCCCATC+TGG + chr7_1:12982630-12982649 None:intergenic 45.0%
GATGGGCACCCTAGTAAATA+TGG - chr7_1:12982630-12982649 Msa1010200:CDS 45.0%
GGAGATTACTTACGGTTGGA+CGG + chr7_1:12982917-12982936 None:intergenic 45.0%
CAGTGGAGATTACTTACGGT+TGG + chr7_1:12982921-12982940 None:intergenic 45.0%
TCTCCACTGAAGAATCTGTG+GGG - chr7_1:12982932-12982951 Msa1010200:five_prime_UTR 45.0%
AAGAATCTGTGGGGCATACA+TGG - chr7_1:12982941-12982960 Msa1010200:five_prime_UTR 45.0%
!!! AAAACTATAATTTTTTAATT+AGG - chr7_1:12981472-12981491 Msa1010200:intron 5.0%
!!! AAACTATAATTTTTTAATTA+GGG - chr7_1:12981473-12981492 Msa1010200:intron 5.0%
!!! AATAATTTAAAGAATTTTAA+GGG - chr7_1:12982372-12982391 Msa1010200:CDS 5.0%
GCATAGGGGATGAAGACTTG+TGG + chr7_1:12977923-12977942 None:intergenic 50.0%
GGTGAACCAACCATGCCATT+AGG + chr7_1:12979791-12979810 None:intergenic 50.0%
TCGAAGAGTCCAGTTGAACC+TGG + chr7_1:12982138-12982157 None:intergenic 50.0%
GCAACAATGTTGAGGCCAGA+TGG - chr7_1:12982612-12982631 Msa1010200:CDS 50.0%
TGCCTGGACCAATTGACACA+TGG - chr7_1:12982706-12982725 Msa1010200:CDS 50.0%
CTCCATGTGTCAATTGGTCC+AGG + chr7_1:12982711-12982730 None:intergenic 50.0%
ATGCCCCACAGATTCTTCAG+TGG + chr7_1:12982938-12982957 None:intergenic 50.0%
GGATAAGGACGTGGAGGACA+GGG + chr7_1:12979963-12979982 None:intergenic 55.0%
TGGATAAGGACGTGGAGGAC+AGG + chr7_1:12979964-12979983 None:intergenic 55.0%
!! TCACGTGGTGGATAAGGACG+TGG + chr7_1:12979972-12979991 None:intergenic 55.0%
GGTCCCCTCACGTAACATCT+AGG + chr7_1:12980936-12980955 None:intergenic 55.0%
! TGTGTGCATTGGTGCTTGCC+TGG - chr7_1:12982690-12982709 Msa1010200:CDS 55.0%
!! CGTGGTGGATAAGGACGTGG+AGG + chr7_1:12979969-12979988 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 12977713 12983136 12977713 ID=Msa1010200;Name=Msa1010200
chr7_1 mRNA 12977713 12983136 12977713 ID=Msa1010200-mRNA-1;Parent=Msa1010200;Name=Msa1010200-mRNA-1;_AED=0.02;_eAED=0.02;_QI=262|1|1|1|0|0|2|327|438
chr7_1 exon 12977713 12978849 12977713 ID=Msa1010200-mRNA-1:exon:3292;Parent=Msa1010200-mRNA-1
chr7_1 exon 12982368 12983136 12982368 ID=Msa1010200-mRNA-1:exon:3291;Parent=Msa1010200-mRNA-1
chr7_1 five_prime_UTR 12982875 12983136 12982875 ID=Msa1010200-mRNA-1:five_prime_utr;Parent=Msa1010200-mRNA-1
chr7_1 CDS 12982368 12982874 12982368 ID=Msa1010200-mRNA-1:cds;Parent=Msa1010200-mRNA-1
chr7_1 CDS 12978040 12978849 12978040 ID=Msa1010200-mRNA-1:cds;Parent=Msa1010200-mRNA-1
chr7_1 three_prime_UTR 12977713 12978039 12977713 ID=Msa1010200-mRNA-1:three_prime_utr;Parent=Msa1010200-mRNA-1
Gene Sequence

>Msa1010200

ATGAAGTTCCAAGCTATGGAACTTCTCTTTGGTAAAAACACACCAAAACAAATGATTCCAAAAGTAACATTACTAGCAATTTTTGCAATACTTGTCTTCACTGTCACACCACTATCCTACCCTTTATTTAGAAATCCTTCATCCTTGAAAAACATTAAAAAAACCAATCAACCATCCACTGCATTTGATGATTTAAATGAATCAGCAAGTTTGCCTTCAACTTCTATAAAAAAGTGTGACATTTTTACAGGTGAGTGGGTTCCAAATCCAAAAGCACCATATTACACAAATAAAACATGTTGGGCAATTCATGAACACCAAAATTGTATGAAATATGGAAGACCAGATTCTGATTACTTGAAATGGAAGTGGAAACCTAATGGTTGTGAGCTTCCTATATTCAATCCTTTTCAGTTTCTTGAAATTGTGAGGGGAAAATCTATGGCTTTTGTTGGAGACTCAGTTGGTAGAAATCAGATGCAGTCCATGATTTGCCTACTATCAAGGGTGGAATGGCCCGTAATTGTATCACACTCTCAAAATGATTATTTCATGACGTGGCACTACCCAACCTATAATTTCACAATGGCCTCTTTTTGGACTCCCCATTTGGTAAGATCTAAAGAATCAGATTTAAAAGGTCCAGGTTCAACTGGACTCTTCGATCTTTACATTGATGAGCCAGATGAAAAATGGATAACTCAAATTGAAGATTTTGATTATGTTATTCTCAATGGAGGACATTGGTTTACAAGATCAATGGTATTCTACGAGAAACAAAAAATTGTTGGATGTCATTATTGTCTCTTAGAAAATGTCCCTGATTTAACCATGTACCATGGTTATAGAAGAGCATTTAGGACTGCATTTAAAGCCATCAATAATTTAAAGAATTTTAAGGGCATAACATTTCTTAGGACATTTTCACCATCACATTTTGAAAATGGGTTATGGAATCAAGGTGGGAATTGTGTTAGAACTAAGCCATTTAGAAGCAATGAAACACAATTAGAGGGATTTAATTTAGAGTTTTATATGATTCAATTGGAAGAGTTCAAAATTGCTGAAAAAGAAGCAAGAAAAAAGGGTTTGAAATTTAGGTTATATGATACAACACAAGCAACAATGTTGAGGCCAGATGGGCACCCTAGTAAATATGGACATTGGCCTAATGAGAATGTGACATTGTATAATGATTGTGTGCATTGGTGCTTGCCTGGACCAATTGACACATGGAGTGATTTCTTGTTAGATATGTTGAAGATGGAGGGTGTGAGATCAGCTGAAGAAAGAAGACTTCATTTGCACACAAATTGA
Protein sequence

>Msa1010200

MKFQAMELLFGKNTPKQMIPKVTLLAIFAILVFTVTPLSYPLFRNPSSLKNIKKTNQPSTAFDDLNESASLPSTSIKKCDIFTGEWVPNPKAPYYTNKTCWAIHEHQNCMKYGRPDSDYLKWKWKPNGCELPIFNPFQFLEIVRGKSMAFVGDSVGRNQMQSMICLLSRVEWPVIVSHSQNDYFMTWHYPTYNFTMASFWTPHLVRSKESDLKGPGSTGLFDLYIDEPDEKWITQIEDFDYVILNGGHWFTRSMVFYEKQKIVGCHYCLLENVPDLTMYHGYRRAFRTAFKAINNLKNFKGITFLRTFSPSHFENGLWNQGGNCVRTKPFRSNETQLEGFNLEFYMIQLEEFKIAEKEARKKGLKFRLYDTTQATMLRPDGHPSKYGHWPNENVTLYNDCVHWCLPGPIDTWSDFLLDMLKMEGVRSAEERRLHLHTN*