AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1343420

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1343420 MtrunA17_Chr2g0283581 97.778 360 8 0 1 360 1 360 0.0 732
Msa1343420 MtrunA17_Chr4g0045951 70.765 366 99 4 1 360 1 364 0.0 536
Msa1343420 MtrunA17_Chr4g0045941 69.101 356 101 2 6 360 5 352 0.0 518
Msa1343420 MtrunA17_Chr2g0325481 64.087 323 114 2 38 359 46 367 4.41e-160 453
Msa1343420 MtrunA17_Chr4g0041011 59.155 355 139 4 7 358 12 363 4.82e-155 440
Msa1343420 MtrunA17_Chr3g0097891 56.056 355 146 4 7 358 3 350 2.01e-146 417
Msa1343420 MtrunA17_Chr2g0314801 56.918 318 133 3 42 355 33 350 4.85e-137 394
Msa1343420 MtrunA17_Chr3g0085071 55.486 319 139 3 42 358 46 363 1.30e-132 383
Msa1343420 MtrunA17_Chr5g0413851 53.846 351 155 5 12 358 12 359 4.81e-132 381
Msa1343420 MtrunA17_Chr3g0091031 54.658 322 143 3 39 358 28 348 8.17e-131 378
Msa1343420 MtrunA17_Chr3g0085081 54.294 326 146 3 35 358 24 348 1.68e-129 374
Msa1343420 MtrunA17_Chr5g0430371 52.326 344 137 6 42 359 58 400 3.05e-125 365
Msa1343420 MtrunA17_Chr3g0105301 52.239 335 143 5 42 359 43 377 2.10e-124 363
Msa1343420 MtrunA17_Chr2g0314791 47.472 356 160 9 15 358 5 345 8.91e-112 329
Msa1343420 MtrunA17_Chr1g0171171 42.781 374 186 9 6 358 9 375 2.94e-98 296
Msa1343420 MtrunA17_Chr1g0210771 42.296 331 170 6 42 358 59 382 5.19e-96 290
Msa1343420 MtrunA17_Chr7g0258851 42.274 343 173 6 42 360 248 589 9.32e-96 296
Msa1343420 MtrunA17_Chr1g0175671 40.233 343 180 6 42 360 170 511 6.81e-94 290
Msa1343420 MtrunA17_Chr4g0068111 38.144 388 205 9 5 358 67 453 3.18e-91 281
Msa1343420 MtrunA17_Chr1g0213281 39.884 346 182 8 38 358 171 515 4.23e-87 272
Msa1343420 MtrunA17_Chr5g0413271 38.393 336 184 6 42 358 145 476 1.25e-85 267
Msa1343420 MtrunA17_Chr8g0368461 39.155 355 174 8 42 358 178 528 5.30e-84 265
Msa1343420 MtrunA17_Chr4g0071391 37.243 341 191 7 42 360 109 448 8.75e-84 261
Msa1343420 MtrunA17_Chr7g0269991 39.339 333 184 7 42 358 137 467 1.02e-80 254
Msa1343420 MtrunA17_Chr4g0006991 37.101 345 186 9 42 358 86 427 1.67e-77 244
Msa1343420 MtrunA17_Chr3g0113671 37.500 344 188 9 42 358 106 449 5.77e-77 244
Msa1343420 MtrunA17_Chr5g0437291 36.888 347 189 9 42 358 165 511 3.88e-74 238
Msa1343420 MtrunA17_Chr8g0360521 36.340 388 210 10 5 359 27 410 1.25e-73 234
Msa1343420 MtrunA17_Chr3g0114101 36.628 344 191 9 42 359 89 431 1.29e-73 234
Msa1343420 MtrunA17_Chr1g0209921 49.351 231 109 6 37 262 39 266 8.57e-73 227
Msa1343420 MtrunA17_Chr3g0126021 38.261 345 187 9 34 358 121 459 9.66e-71 228
Msa1343420 MtrunA17_Chr5g0437601 34.837 399 212 11 9 359 27 425 6.45e-70 225
Msa1343420 MtrunA17_Chr2g0287901 34.540 359 207 6 22 356 81 435 1.91e-68 222
Msa1343420 MtrunA17_Chr4g0005491 34.582 347 198 10 42 359 62 408 2.84e-66 215
Msa1343420 MtrunA17_Chr7g0259711 36.023 347 193 9 39 358 88 432 6.39e-66 215
Msa1343420 MtrunA17_Chr7g0242701 34.393 346 200 9 39 358 83 427 1.20e-64 211
Msa1343420 MtrunA17_Chr4g0005481 33.811 349 203 9 35 358 101 446 1.96e-64 211
Msa1343420 MtrunA17_Chr8g0384151 31.335 367 229 7 8 359 59 417 9.45e-63 206
Msa1343420 MtrunA17_Chr7g0243301 31.675 382 230 11 7 359 31 410 2.95e-62 204
Msa1343420 MtrunA17_Chr1g0178081 30.311 386 183 10 5 358 10 341 1.98e-52 177
Msa1343420 MtrunA17_Chr2g0283851 30.194 361 212 13 35 360 48 403 9.23e-40 145
Msa1343420 MtrunA17_Chr4g0049421 28.986 345 209 11 42 354 48 388 4.80e-39 143
Msa1343420 MtrunA17_Chr6g0456691 30.352 369 216 11 26 360 60 421 1.19e-38 142
Msa1343420 MtrunA17_Chr8g0384421 31.503 346 206 13 40 358 131 472 2.19e-37 140
Msa1343420 MtrunA17_Chr6g0476041 29.155 367 199 12 38 358 163 514 2.76e-37 140
Msa1343420 MtrunA17_Chr8g0347321 29.396 364 216 13 27 358 85 439 2.24e-36 137
Msa1343420 MtrunA17_Chr1g0188191 31.180 356 198 15 38 354 230 577 2.39e-36 139
Msa1343420 MtrunA17_Chr3g0085101 53.636 110 50 1 225 333 1 110 5.74e-36 127
Msa1343420 MtrunA17_Chr6g0456681 29.752 363 194 13 41 360 63 407 8.40e-36 135
Msa1343420 MtrunA17_Chr5g0414061 30.362 359 210 14 34 358 86 438 2.09e-35 134
Msa1343420 MtrunA17_Chr4g0070341 30.460 348 205 13 41 358 131 471 4.69e-34 130
Msa1343420 MtrunA17_Chr6g0455901 30.000 370 216 16 25 358 54 416 8.78e-34 129
Msa1343420 MtrunA17_Chr5g0414091 30.372 349 209 13 42 358 85 431 4.75e-33 127
Msa1343420 MtrunA17_Chr3g0140371 28.857 350 213 12 40 358 16 360 5.27e-33 126
Msa1343420 MtrunA17_Chr6g0451321 27.793 367 231 11 22 358 95 457 3.37e-32 125
Msa1343420 MtrunA17_Chr5g0414051 27.989 368 216 14 30 358 63 420 5.65e-30 119
Msa1343420 MtrunA17_Chr7g0226991 28.771 358 218 11 34 358 49 402 5.93e-30 118
Msa1343420 MtrunA17_Chr8g0387921 27.273 352 219 12 36 354 68 415 1.08e-27 112
Msa1343420 MtrunA17_Chr8g0391481 26.648 364 230 11 28 358 13 372 2.04e-27 111
Msa1343420 MtrunA17_Chr5g0414041 28.448 348 217 12 42 358 87 433 4.95e-27 110
Msa1343420 MtrunA17_Chr7g0221271 33.333 189 94 6 6 167 22 205 1.70e-21 91.3
Msa1343420 MtrunA17_Chr7g0221291 46.067 89 47 1 42 129 79 167 3.01e-21 89.7
Msa1343420 MtrunA17_Chr1g0209931 50.000 88 40 2 272 358 8 92 8.37e-21 86.3
Msa1343420 MtrunA17_Chr5g0429211 50.602 83 40 1 87 169 187 268 1.61e-19 87.4
Msa1343420 MtrunA17_Chr2g0287931 32.000 125 71 2 101 211 2 126 3.86e-15 71.2
Msa1343420 MtrunA17_Chr5g0429191 57.778 45 10 1 316 351 1 45 8.89e-11 56.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1343420 AT1G29050.1 73.353 334 86 3 29 360 48 380 0.0 526
Msa1343420 AT2G34070.1 69.970 333 94 5 31 360 56 385 4.11e-179 502
Msa1343420 AT2G42570.1 61.774 327 124 1 34 359 39 365 3.07e-158 448
Msa1343420 AT2G31110.2 58.592 355 136 3 9 358 14 362 4.61e-153 435
Msa1343420 AT2G34070.2 71.032 252 70 3 111 360 1 251 1.32e-134 384
Msa1343420 AT3G14850.2 54.658 322 142 3 38 355 30 351 4.03e-130 377
Msa1343420 AT2G30900.1 50.549 364 168 8 2 359 9 366 1.66e-127 370
Msa1343420 AT1G78710.1 50.926 324 153 5 39 358 35 356 1.90e-123 360
Msa1343420 AT5G58600.1 50.149 335 149 6 42 358 66 400 2.15e-114 338
Msa1343420 AT2G30010.1 49.568 347 151 6 36 358 50 396 1.47e-111 331
Msa1343420 AT2G30010.2 49.568 347 151 6 36 358 93 439 1.93e-111 332
Msa1343420 AT2G31110.3 57.480 254 97 3 9 257 14 261 8.45e-103 304
Msa1343420 AT3G14850.1 54.032 248 111 2 111 355 1 248 9.67e-98 290
Msa1343420 AT2G31110.1 61.353 207 80 0 152 358 8 214 1.48e-95 283
Msa1343420 AT3G12060.1 42.857 343 171 7 42 360 196 537 1.34e-94 293
Msa1343420 AT3G54260.1 43.048 374 186 11 3 358 10 374 2.96e-94 286
Msa1343420 AT5G06700.1 41.570 344 176 6 41 360 254 596 3.74e-94 293
Msa1343420 AT1G78710.2 41.667 324 130 6 39 358 28 296 2.44e-87 266
Msa1343420 AT5G20590.1 39.359 343 184 8 41 360 140 481 6.24e-87 271
Msa1343420 AT3G62390.1 37.598 383 201 9 12 358 91 471 1.16e-86 270
Msa1343420 AT2G30900.2 50.965 259 118 6 2 257 9 261 2.95e-86 262
Msa1343420 AT5G49340.1 37.978 366 194 8 25 358 77 441 3.18e-86 268
Msa1343420 AT1G60790.1 39.244 344 181 9 42 358 190 532 9.14e-83 261
Msa1343420 AT5G58600.2 52.232 224 104 3 42 262 66 289 5.47e-81 249
Msa1343420 AT5G01360.2 36.000 375 210 9 12 358 6 378 9.84e-80 249
Msa1343420 AT5G01360.1 37.971 345 184 9 42 358 92 434 1.43e-78 248
Msa1343420 AT5G19160.1 38.040 347 186 6 39 356 96 442 5.20e-77 244
Msa1343420 AT3G11030.1 38.418 354 187 11 33 359 100 449 1.31e-74 238
Msa1343420 AT3G55990.1 35.756 344 194 8 42 358 140 483 1.49e-72 234
Msa1343420 AT1G73140.1 34.656 378 210 10 14 358 32 405 3.26e-72 231
Msa1343420 AT2G40150.1 34.943 352 196 8 40 358 69 420 1.30e-71 229
Msa1343420 AT3G06080.2 36.676 349 192 10 39 360 100 446 4.39e-71 229
Msa1343420 AT2G40160.1 34.384 349 197 9 42 360 77 423 2.68e-70 226
Msa1343420 AT2G40160.2 34.402 343 195 8 42 354 77 419 3.36e-70 226
Msa1343420 AT1G48880.1 35.674 356 206 7 20 359 92 440 7.87e-70 225
Msa1343420 AT2G40320.1 36.390 349 193 10 38 359 77 423 8.00e-70 225
Msa1343420 AT3G11570.1 33.504 391 222 10 3 358 32 419 1.93e-67 219
Msa1343420 AT5G06230.2 34.000 350 202 7 37 358 16 364 8.48e-67 215
Msa1343420 AT5G06230.1 34.000 350 202 7 37 358 57 405 1.38e-66 216
Msa1343420 AT2G38320.1 32.673 404 226 12 1 358 1 404 5.57e-66 214
Msa1343420 AT5G01620.2 33.333 342 201 9 42 358 110 449 4.31e-64 211
Msa1343420 AT5G01620.1 33.333 342 201 9 42 358 110 449 4.31e-64 211
Msa1343420 AT5G01620.3 33.333 342 201 9 42 358 118 457 5.06e-64 211
Msa1343420 AT3G62390.2 34.507 284 156 6 12 265 91 374 1.01e-56 191
Msa1343420 AT2G38320.2 32.704 318 187 7 68 358 4 321 1.95e-56 187
Msa1343420 AT5G19160.2 39.004 241 132 4 39 264 96 336 4.12e-56 187
Msa1343420 AT5G20590.2 39.331 239 130 6 41 264 140 378 1.12e-55 187
Msa1343420 AT2G40160.3 35.470 234 138 5 42 262 77 310 1.30e-48 166
Msa1343420 AT3G06080.1 35.270 241 141 4 39 264 100 340 2.14e-48 167
Msa1343420 AT5G06230.3 33.735 249 144 4 37 264 57 305 5.73e-44 154
Msa1343420 AT5G64470.3 30.398 352 211 11 34 354 42 390 6.79e-44 156
Msa1343420 AT5G64470.2 30.362 359 208 12 34 354 42 396 6.62e-43 154
Msa1343420 AT2G14530.1 30.280 393 229 14 6 359 21 407 1.64e-40 147
Msa1343420 AT1G01430.1 27.642 369 225 11 26 358 85 447 1.46e-37 140
Msa1343420 AT3G02440.2 29.745 353 201 11 42 358 135 476 1.74e-37 140
Msa1343420 AT3G02440.1 29.745 353 201 11 42 358 127 468 1.83e-37 140
Msa1343420 AT1G70230.1 30.286 350 194 15 42 358 79 411 6.71e-37 138
Msa1343420 AT5G64020.1 30.447 358 202 15 42 358 57 408 3.02e-36 136
Msa1343420 AT5G51640.1 29.487 390 220 15 16 358 107 488 8.76e-36 136
Msa1343420 AT4G25360.1 28.977 352 205 12 42 354 175 520 2.27e-35 135
Msa1343420 AT4G25360.2 28.977 352 205 12 42 354 175 520 2.27e-35 135
Msa1343420 AT5G15900.1 27.366 391 244 10 5 358 22 409 3.53e-34 130
Msa1343420 AT5G15900.2 27.366 391 244 10 5 358 41 428 3.65e-34 131
Msa1343420 AT2G37720.1 29.577 355 197 13 42 358 143 482 7.04e-34 130
Msa1343420 AT3G28150.1 29.648 398 213 16 5 358 36 410 4.99e-33 127
Msa1343420 AT5G20680.6 28.919 370 224 15 18 358 98 457 1.03e-32 127
Msa1343420 AT5G20680.4 28.919 370 224 15 18 358 192 551 2.12e-32 127
Msa1343420 AT5G20680.1 28.919 370 224 15 18 358 192 551 2.12e-32 127
Msa1343420 AT5G20680.3 28.919 370 224 15 18 358 192 551 2.12e-32 127
Msa1343420 AT5G20680.5 28.919 370 224 15 18 358 192 551 2.12e-32 127
Msa1343420 AT5G20680.2 28.919 370 224 15 18 358 174 533 2.14e-32 127
Msa1343420 AT5G15890.1 28.736 348 205 11 42 358 187 522 1.22e-31 125
Msa1343420 AT4G01080.1 27.714 350 212 13 37 354 86 426 7.12e-29 116
Msa1343420 AT4G11090.1 26.575 365 212 13 37 358 74 425 1.70e-27 112
Msa1343420 AT4G23790.1 26.634 413 234 18 7 358 23 427 2.69e-27 112
Msa1343420 AT5G64470.4 28.736 261 160 8 34 270 42 300 6.81e-26 106
Msa1343420 AT5G64470.1 28.736 261 160 8 34 270 42 300 8.75e-26 106

Find 107 sgRNAs with CRISPR-Local

Find 418 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAATATATATTAAGATTTA+AGG 0.107054 tig0006407:-7128 Msa1343420:three_prime_UTR
ACTATACCGCACACCTTATT+TGG 0.110333 tig0006407:-8410 Msa1343420:CDS
TTTGAATAAATGTTAGTTAT+TGG 0.121963 tig0006407:-6879 Msa1343420:three_prime_UTR
GATTGACCACTTGGGCTAAA+TGG 0.217574 tig0006407:-7682 Msa1343420:CDS
CGAATTATGTCAACCAAATA+AGG 0.257968 tig0006407:+8397 Msa1343420:intergenic
AAAATCAAGTGTAAAATTAT+AGG 0.261207 tig0006407:-7101 Msa1343420:three_prime_UTR
GGACAACTTCAACCATTATC+AGG 0.281304 tig0006407:-7425 Msa1343420:CDS
CCGTTTAGTGGCATACAATA+AGG 0.283673 tig0006407:-7705 Msa1343420:CDS
CTTGGTGTGGTGGGTGATAT+TGG 0.287316 tig0006407:+13389 Msa1343420:intergenic
CATTCAAGGCAAATCTCAAA+TGG 0.321965 tig0006407:-13303 Msa1343420:exon
TTGAAAGAAGACTTTAGTTT+TGG 0.332563 tig0006407:+7637 Msa1343420:intergenic
TTGTTCAATATGTTACTTGA+TGG 0.341330 tig0006407:+7377 Msa1343420:intergenic
AGTAATGTAAGTAGCTTAAG+AGG 0.341506 tig0006407:-13209 Msa1343420:CDS
CTTGGTAAGGCACATGAATC+AGG 0.346575 tig0006407:+13023 Msa1343420:intergenic
GGGATTGTGACAAAGGGTTT+TGG 0.350841 tig0006407:+13432 Msa1343420:intergenic
AATGGGTGCAATTTGTTCAT+AGG 0.370881 tig0006407:-13167 Msa1343420:CDS
AAAACTAAAGTCTTCTTTCA+AGG 0.374728 tig0006407:-7635 Msa1343420:CDS
AGGAGTTGGTTCCAAGTATC+AGG 0.377013 tig0006407:+7215 Msa1343420:intergenic
TATTTGAGGTATTGTTTGTC+AGG 0.377428 tig0006407:+13056 Msa1343420:intergenic
GTAATATCAAGTAGATAAAC+TGG 0.378242 tig0006407:+7332 Msa1343420:intergenic
TTACTAAACAAAATAAGTTC+AGG 0.384530 tig0006407:-7074 Msa1343420:three_prime_UTR
AAATATATATTAAGATTTAA+GGG 0.410386 tig0006407:-7127 Msa1343420:three_prime_UTR
GGTGTATTTGTGCAGGACTA+TGG 0.415902 tig0006407:-8445 Msa1343420:intron
AACAATACCTCAAATACTCT+TGG 0.417652 tig0006407:-13049 Msa1343420:CDS
TACCAGGATTACCTGATACT+TGG 0.421208 tig0006407:-7226 Msa1343420:CDS
GCAATTTGTTCATAGGAAGT+TGG 0.421455 tig0006407:-13160 Msa1343420:CDS
CGTTTAGTGGCATACAATAA+GGG 0.422401 tig0006407:-7704 Msa1343420:CDS
CAATTTGTTCATAGGAAGTT+GGG 0.425464 tig0006407:-13159 Msa1343420:CDS
TGCAGCCATTGGTGCTTACC+AGG 0.425703 tig0006407:-7242 Msa1343420:CDS
ACAGTCTACAGTGACATTCC+AGG 0.428183 tig0006407:-12363 Msa1343420:intron
ATTGACCACTTGGGCTAAAT+GGG 0.430670 tig0006407:-7681 Msa1343420:CDS
TTGCACCCATTTGCTACTAC+TGG 0.431740 tig0006407:+13179 Msa1343420:intergenic
CAAGAACATGGACCGTTTAG+TGG 0.437683 tig0006407:-7717 Msa1343420:CDS
GGATATGTTGACCCTGATAA+TGG 0.441283 tig0006407:+7413 Msa1343420:intergenic
TTAACATTGGAGGATGTAGA+TGG 0.445837 tig0006407:-13590 Msa1343420:five_prime_UTR
ATCTACATCCTCCAATGTTA+AGG 0.455082 tig0006407:+13592 Msa1343420:intergenic
ACCCCTGTGATGATCCTTTG+TGG 0.461343 tig0006407:+8275 Msa1343420:intergenic
ATTAAATTCAGGATCAATGA+AGG 0.474200 tig0006407:+13097 Msa1343420:intergenic
ACAATAAGGGATTGACCACT+TGG 0.475609 tig0006407:-7691 Msa1343420:CDS
CAGGTTTCCAAGAGTATTTG+AGG 0.480299 tig0006407:+13042 Msa1343420:intergenic
GCCTGCATGATCACCACTAT+AGG 0.481631 tig0006407:+7271 Msa1343420:intergenic
GAGCACACTAGTTTCATTCA+AGG 0.483537 tig0006407:-13317 Msa1343420:five_prime_UTR
CCCCTGTGATGATCCTTTGT+GGG 0.484273 tig0006407:+8276 Msa1343420:intergenic
TACTAAACAAAATAAGTTCA+GGG 0.485961 tig0006407:-7073 Msa1343420:three_prime_UTR
GTCGGTTCTCTTGGTGTGGT+GGG 0.486749 tig0006407:+13380 Msa1343420:intergenic
CCTTATTGTATGCCACTAAA+CGG 0.487673 tig0006407:+7705 Msa1343420:intergenic
ATTCAAGGCAAATCTCAAAT+GGG 0.493177 tig0006407:-13302 Msa1343420:exon
TAGTACTTAGTCGGTTCTCT+TGG 0.493289 tig0006407:+13371 Msa1343420:intergenic
ACATGTAGAGTGCAGCATAT+AGG 0.498513 tig0006407:+7195 Msa1343420:intergenic
GGGTAAGAAGATAATGTTTG+TGG 0.503120 tig0006407:-12480 Msa1343420:CDS
GGTAAGAAGATAATGTTTGT+GGG 0.504608 tig0006407:-12479 Msa1343420:CDS
ATGAAACTAGTGTGCTCTTG+TGG 0.507084 tig0006407:+13323 Msa1343420:intergenic
GCACACCCTTCTTCCTATAG+TGG 0.508415 tig0006407:-7284 Msa1343420:CDS
CAGGCAATGATTGCAGCCAT+TGG 0.512288 tig0006407:-7253 Msa1343420:CDS
CCCGTGAGCCTTAACATTGG+AGG 0.516984 tig0006407:-13600 None:intergenic
TTACACTTCTCTCACAACTA+AGG 0.518338 tig0006407:-7313 Msa1343420:CDS
AGTCGGTTCTCTTGGTGTGG+TGG 0.523282 tig0006407:+13379 Msa1343420:intergenic
AGATGGGATTATATAAGAGA+TGG 0.530008 tig0006407:-7752 Msa1343420:CDS
TTGTGACTTGAACAGGGGAA+AGG 0.533258 tig0006407:-7477 Msa1343420:intron
TGATCACCACTATAGGAAGA+AGG 0.537215 tig0006407:+7278 Msa1343420:intergenic
GTAATCCTGGTAAGCACCAA+TGG 0.537271 tig0006407:+7237 Msa1343420:intergenic
TCCTATAGTGGTGATCATGC+AGG 0.537608 tig0006407:-7272 Msa1343420:CDS
ACATTGGACTCTATTGTCGC+TGG 0.539178 tig0006407:-8352 Msa1343420:CDS
TGAAACTAGTGTGCTCTTGT+GGG 0.541314 tig0006407:+13324 Msa1343420:intergenic
TTCCAAGTATCAGGTAATCC+TGG 0.542149 tig0006407:+7224 Msa1343420:intergenic
TTCAATATGTTACTTGATGG+AGG 0.553250 tig0006407:+7380 Msa1343420:intergenic
TTAAATTCAGGATCAATGAA+GGG 0.558381 tig0006407:+13098 Msa1343420:intergenic
CTTGATGGAGGTAGACCTGC+TGG 0.559776 tig0006407:+7392 Msa1343420:intergenic
AGGGTATATATACCTTGGTA+AGG 0.564303 tig0006407:+13010 Msa1343420:intergenic
TGGGTCATATATATGTATGA+TGG 0.565789 tig0006407:+13343 Msa1343420:intergenic
AAAAGCCAGTAGTAGCAAAT+GGG 0.567471 tig0006407:-13184 Msa1343420:CDS
GATGTAGATGGTTAGACCAA+TGG 0.567920 tig0006407:-13578 Msa1343420:five_prime_UTR
GACCCACAAAGGATCATCAC+AGG 0.570940 tig0006407:-8278 Msa1343420:CDS
GATGGGATTATATAAGAGAT+GGG 0.572464 tig0006407:-7751 Msa1343420:CDS
ATCAACCCATTTAGCCCAAG+TGG 0.578202 tig0006407:+7676 Msa1343420:intergenic
CGTTGGACGAGTGCTTACAT+TGG 0.580963 tig0006407:-8368 Msa1343420:CDS
AATCATAGAGAGGATAAGAC+GGG 0.584204 tig0006407:+13129 Msa1343420:intergenic
CTTAGTCGGTTCTCTTGGTG+TGG 0.587703 tig0006407:+13376 Msa1343420:intergenic
GTCTTGTATGATTCATGCGT+CGG 0.589673 tig0006407:-12423 Msa1343420:CDS
GTCGCTGGAAATGCATGGAA+AGG 0.589762 tig0006407:-8337 Msa1343420:CDS
AGAGTGCAGCATATAGGAGT+TGG 0.590451 tig0006407:+7201 Msa1343420:intergenic
ATGGAAAAGTAGTACTTAGT+CGG 0.593125 tig0006407:+13362 Msa1343420:intergenic
TCAGGGTCAACATATCCAGC+AGG 0.593746 tig0006407:-7407 Msa1343420:CDS
GACATAATTCGAGAAAACGT+TGG 0.597443 tig0006407:-8385 Msa1343420:CDS
TGGAAATGCATGGAAAGGAA+TGG 0.604996 tig0006407:-8332 Msa1343420:CDS
GATCACCACTATAGGAAGAA+GGG 0.614202 tig0006407:+7279 Msa1343420:intergenic
GTAATGTAAGTAGCTTAAGA+GGG 0.614558 tig0006407:-13208 Msa1343420:CDS
GAATCATAGAGAGGATAAGA+CGG 0.618192 tig0006407:+13128 Msa1343420:intergenic
ATTCACTGAGTCTGAACATG+TGG 0.618824 tig0006407:-12454 Msa1343420:CDS
ATGGAAAGGAATGGACATGC+TGG 0.621693 tig0006407:-8323 Msa1343420:CDS
GACAACTTCAACCATTATCA+GGG 0.625022 tig0006407:-7424 Msa1343420:CDS
CTGATTCATGTGCCTTACCA+AGG 0.626680 tig0006407:-13022 Msa1343420:intron
CTATTGTCGCTGGAAATGCA+TGG 0.626945 tig0006407:-8342 Msa1343420:CDS
TAAATTCAGGATCAATGAAG+GGG 0.628632 tig0006407:+13099 Msa1343420:intergenic
TGGCATTGGTGGACCCACAA+AGG 0.630583 tig0006407:-8289 Msa1343420:CDS
TAACCCGTGAGCCTTAACAT+TGG 0.631583 tig0006407:-13603 None:intergenic
TTTGTTCATAGGAAGTTGGG+TGG 0.640742 tig0006407:-13156 Msa1343420:CDS
ACTTGAACAGGGGAAAGGAG+TGG 0.645093 tig0006407:-7472 Msa1343420:intron
GGCACTTACTGATAATGAGT+AGG 0.647065 tig0006407:+7605 Msa1343420:intergenic
GTCTAAACTAGTCAAGAACA+TGG 0.648323 tig0006407:-7729 Msa1343420:CDS
ACGAAGGAAAATGATCAACA+TGG 0.657716 tig0006407:+7158 Msa1343420:intergenic
TGTCAACCAAATAAGGTGTG+CGG 0.666261 tig0006407:+8404 Msa1343420:intergenic
CAATAAGGGATTGACCACTT+GGG 0.666755 tig0006407:-7690 Msa1343420:CDS
ACCCACAAAGGATCATCACA+GGG 0.673284 tig0006407:-8277 Msa1343420:CDS
GGGCAGCTTGAATCATAGAG+AGG 0.678061 tig0006407:+13119 Msa1343420:intergenic
TTCACTGAGTCTGAACATGT+GGG 0.711654 tig0006407:-12453 Msa1343420:CDS
CCCACAAAGGATCATCACAG+GGG 0.803852 tig0006407:-8276 Msa1343420:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTAATTTTTTTA+TGG - tig0006407:11072-11091 Msa1343420:intron 0.0%
!!! TATAATTAAAATTTTATTAA+TGG + tig0006407:12643-12662 Msa1343420:intergenic 0.0%
!! ATCAAATAAATAAATTTAAC+TGG + tig0006407:7594-7613 Msa1343420:intergenic 10.0%
!!! GTATAGTTTTTAAAAAATTA+CGG - tig0006407:8440-8459 Msa1343420:intron 10.0%
!!! TCAATTTTTATTTTTATTGT+AGG + tig0006407:8544-8563 Msa1343420:intergenic 10.0%
!!! TAAATTTGTAAATTTGATTT+TGG - tig0006407:8602-8621 Msa1343420:intron 10.0%
!! AAAATGAAATATATTGTATT+GGG + tig0006407:9395-9414 Msa1343420:intergenic 10.0%
!! AAGAAAAATGTATAAATAAA+GGG + tig0006407:9419-9438 Msa1343420:intergenic 10.0%
!! TAAGAAAAATGTATAAATAA+AGG + tig0006407:9420-9439 Msa1343420:intergenic 10.0%
!!! ACACTGATTTTTTTATTTTT+GGG + tig0006407:7054-7073 Msa1343420:intergenic 15.0%
!!! TATTTTTGACAATTAAATTC+AGG + tig0006407:7380-7399 Msa1343420:intergenic 15.0%
!! GAATTTAATTGTCAAAAATA+TGG - tig0006407:7380-7399 Msa1343420:CDS 15.0%
!! AAGAAATTGTATAATTGTAT+TGG + tig0006407:7491-7510 Msa1343420:intergenic 15.0%
!! TGTTTGATAGATATAAATAA+AGG + tig0006407:7702-7721 Msa1343420:intergenic 15.0%
!! TGAGAGAAAATTATTAATAA+CGG + tig0006407:7874-7893 Msa1343420:intergenic 15.0%
!! AAAATAAAATAAAGTAAACC+TGG + tig0006407:8121-8140 Msa1343420:intergenic 15.0%
!!! AATTTGATTTTGGTTAAAAA+CGG - tig0006407:8612-8631 Msa1343420:intron 15.0%
!! TATTTAGTGTTATATTGTAT+TGG + tig0006407:8949-8968 Msa1343420:intergenic 15.0%
!!! AAGAAAAGTGTATAAATAAA+GGG + tig0006407:9013-9032 Msa1343420:intergenic 15.0%
!!! TAAGAAAAGTGTATAAATAA+AGG + tig0006407:9014-9033 Msa1343420:intergenic 15.0%
!! ATTTAGTGTTATATTGTATT+GGG + tig0006407:8948-8967 Msa1343420:intergenic 15.0%
!! TATTTAGTGTTATATTGTAT+TGG + tig0006407:8949-8968 Msa1343420:intergenic 15.0%
!! GAAAATGAAATATATTGTAT+TGG + tig0006407:9396-9415 Msa1343420:intergenic 15.0%
!! AGAAAAATGTATAAATAAAG+GGG + tig0006407:9418-9437 Msa1343420:intergenic 15.0%
!!! TATTTTTTTTTATAAAGGGA+TGG - tig0006407:10111-10130 Msa1343420:intron 15.0%
!!! TCATTACTCATTTTAATTTT+GGG + tig0006407:10500-10519 Msa1343420:intergenic 15.0%
!!! TAAGTTGAAATTAATATTGA+TGG - tig0006407:10792-10811 Msa1343420:intron 15.0%
!! TGAATAATTCTTTGATTAAA+AGG + tig0006407:10826-10845 Msa1343420:intergenic 15.0%
!! AATAAAATAGCAATAAACAT+TGG + tig0006407:10883-10902 Msa1343420:intergenic 15.0%
!! TGAAGATTAATATAATGAAA+TGG - tig0006407:11260-11279 Msa1343420:intron 15.0%
!! GAAGATTAATATAATGAAAT+GGG - tig0006407:11261-11280 Msa1343420:intron 15.0%
!!! AAAAAATTAAGCATTGAAAA+TGG + tig0006407:11310-11329 Msa1343420:intergenic 15.0%
!!! TTCAATGCTTAATTTTTTAT+CGG - tig0006407:11312-11331 Msa1343420:intron 15.0%
!!! CATCTAAAATTTAAGATATT+AGG + tig0006407:11454-11473 Msa1343420:intergenic 15.0%
!!! CTAATATCTTAAATTTTAGA+TGG - tig0006407:11452-11471 Msa1343420:intron 15.0%
!!! GTAATTTATATAGTTCTTTT+GGG + tig0006407:12327-12346 Msa1343420:intergenic 15.0%
!!! AGTAATTTATATAGTTCTTT+TGG + tig0006407:12328-12347 Msa1343420:intergenic 15.0%
!! CTATATAAATTACTTTCTAA+CGG - tig0006407:12334-12353 Msa1343420:intron 15.0%
!!! AATTTTATTAATGGAAGTAT+CGG + tig0006407:12634-12653 Msa1343420:intergenic 15.0%
!! AAAGAAAAAAAAACATTACT+TGG - tig0006407:12664-12683 Msa1343420:intron 15.0%
!!! TTAATTTATTTTCAGCATTA+TGG + tig0006407:12948-12967 Msa1343420:intergenic 15.0%
!! AAAATCAAGTGTAAAATTAT+AGG - tig0006407:13362-13381 Msa1343420:five_prime_UTR 15.0%
!! TATTAAAAAATTACTTTACG+AGG - tig0006407:13428-13447 Msa1343420:five_prime_UTR 15.0%
!! ATTAAAAAATTACTTTACGA+GGG - tig0006407:13429-13448 Msa1343420:five_prime_UTR 15.0%
!! TTTGAATAAATGTTAGTTAT+TGG - tig0006407:13584-13603 Msa1343420:five_prime_UTR 15.0%
!!! ATTGAAGAGATTGTTTTTAT+GGG + tig0006407:6970-6989 Msa1343420:intergenic 20.0%
!!! AATTGAAGAGATTGTTTTTA+TGG + tig0006407:6971-6990 Msa1343420:intergenic 20.0%
!!! GACACTGATTTTTTTATTTT+TGG + tig0006407:7055-7074 Msa1343420:intergenic 20.0%
!! TAATCTAAGAAACATGATAT+TGG + tig0006407:7519-7538 Msa1343420:intergenic 20.0%
!! AAAAACATACACATGATATT+TGG + tig0006407:8326-8345 Msa1343420:intergenic 20.0%
!! AAAAATATCATGTGTATGTT+TGG - tig0006407:8358-8377 Msa1343420:CDS 20.0%
!! TGTTTGAATACATTTAATCA+AGG - tig0006407:8659-8678 Msa1343420:intron 20.0%
!! TATTTGAATACATTTAATCC+AGG - tig0006407:8758-8777 Msa1343420:intron 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG + tig0006407:8879-8898 Msa1343420:intergenic 20.0%
!!! AGAAAAGTGTATAAATAAAG+GGG + tig0006407:9012-9031 Msa1343420:intergenic 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG + tig0006407:8879-8898 Msa1343420:intergenic 20.0%
!! GTTGTATTGAAAATTGAAAT+GGG + tig0006407:8915-8934 Msa1343420:intergenic 20.0%
!! AGTTGTATTGAAAATTGAAA+TGG + tig0006407:8916-8935 Msa1343420:intergenic 20.0%
!! CAAGAAATATATAAATCGAA+AGG - tig0006407:9516-9535 Msa1343420:intron 20.0%
!!! TTTGATTAGTTGAGATATAA+GGG + tig0006407:10014-10033 Msa1343420:intergenic 20.0%
!!! TTTTGATTAGTTGAGATATA+AGG + tig0006407:10015-10034 Msa1343420:intergenic 20.0%
!!! TTGATTTTTGAATTGTTGAT+TGG + tig0006407:10224-10243 Msa1343420:intergenic 20.0%
!!! TTTCTCAACTTTATTTTTTG+TGG + tig0006407:10271-10290 Msa1343420:intergenic 20.0%
!! TGAATTAAATCATATGTGAT+CGG + tig0006407:10345-10364 Msa1343420:intergenic 20.0%
!!! CATTACTCATTTTAATTTTG+GGG + tig0006407:10499-10518 Msa1343420:intergenic 20.0%
!!! GTCATTACTCATTTTAATTT+TGG + tig0006407:10501-10520 Msa1343420:intergenic 20.0%
!! TGTTTCATAATTTCATACTA+CGG + tig0006407:10737-10756 Msa1343420:intergenic 20.0%
!! TAATTCTTTGATTAAAAGGT+AGG + tig0006407:10822-10841 Msa1343420:intergenic 20.0%
!!! ATAAAAACAGCATTTTCAAA+AGG + tig0006407:11114-11133 Msa1343420:intergenic 20.0%
!!! TCAATGCTTAATTTTTTATC+GGG - tig0006407:11313-11332 Msa1343420:intron 20.0%
!! TTATCGGGTAAAATTTATAT+AGG - tig0006407:11328-11347 Msa1343420:intron 20.0%
!!! TTTTGGGTAAAATATACTAT+AGG + tig0006407:11563-11582 Msa1343420:intergenic 20.0%
!!! ACAATACACATTTTAAGATT+AGG + tig0006407:11720-11739 Msa1343420:intergenic 20.0%
!! TATTCATTCGTTATATGTAA+AGG + tig0006407:11792-11811 Msa1343420:intergenic 20.0%
!! TATTAAAGAGTGATAACATT+TGG - tig0006407:11991-12010 Msa1343420:intron 20.0%
!!! TTTGTTTTTTGGTGAATAAA+TGG + tig0006407:12379-12398 Msa1343420:intergenic 20.0%
!!! TCGTGATTTTGTAAATATTA+CGG - tig0006407:12509-12528 Msa1343420:CDS 20.0%
!! CATTATGGAATATACAAAAA+TGG + tig0006407:12933-12952 Msa1343420:intergenic 20.0%
!! TTACTAAACAAAATAAGTTC+AGG - tig0006407:13389-13408 Msa1343420:five_prime_UTR 20.0%
!! TACTAAACAAAATAAGTTCA+GGG - tig0006407:13390-13409 Msa1343420:five_prime_UTR 20.0%
!! TTAAAAAATTACTTTACGAG+GGG - tig0006407:13430-13449 Msa1343420:five_prime_UTR 20.0%
!! TTCTTTTGTATTCATTCCAT+TGG + tig0006407:6904-6923 Msa1343420:intergenic 25.0%
!!! TTGAAGAGATTGTTTTTATG+GGG + tig0006407:6969-6988 Msa1343420:intergenic 25.0%
! TTAAATTCAGGATCAATGAA+GGG + tig0006407:7368-7387 Msa1343420:intergenic 25.0%
! ATTAAATTCAGGATCAATGA+AGG + tig0006407:7369-7388 Msa1343420:intergenic 25.0%
! TAAGAAACATGATATTGGTA+TGG + tig0006407:7514-7533 Msa1343420:intergenic 25.0%
! TAAATTTAACTGGCTGATAT+TGG + tig0006407:7584-7603 Msa1343420:intergenic 25.0%
! TCAAATCTTATATGAGAAAG+TGG - tig0006407:7664-7683 Msa1343420:CDS 25.0%
! TGATAGATATAAATAAAGGC+TGG + tig0006407:7698-7717 Msa1343420:intergenic 25.0%
! TATCAAACACAAATACTACT+TGG - tig0006407:7713-7732 Msa1343420:CDS 25.0%
!! TTTTGTATTAGTGTTGTGTT+TGG - tig0006407:7814-7833 Msa1343420:intron 25.0%
! TCTTTGTCTTCTTTCTAATT+TGG - tig0006407:8148-8167 Msa1343420:intron 25.0%
! TAAAGAAACAAACAAGGAAA+TGG + tig0006407:8233-8252 Msa1343420:intergenic 25.0%
!!! AGAATTTTGAAGAGTATGTT+TGG + tig0006407:8498-8517 Msa1343420:intergenic 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG + tig0006407:8880-8899 Msa1343420:intergenic 25.0%
!!! TGAAATGAGTCAGTTATTTT+GGG + tig0006407:8901-8920 Msa1343420:intergenic 25.0%
!! TTGAAATGAGTCAGTTATTT+TGG + tig0006407:8902-8921 Msa1343420:intergenic 25.0%
! TGTTTGAATACATTTAATCC+AGG - tig0006407:9096-9115 Msa1343420:intron 25.0%
! TTGACATAAACTAACTTTAG+TGG + tig0006407:9123-9142 Msa1343420:intergenic 25.0%
! TTAGTTTATGTCAAAACTGT+TGG - tig0006407:9129-9148 Msa1343420:intron 25.0%
!!! TTAGTGTGTGTTTAGTTTTA+AGG + tig0006407:9172-9191 Msa1343420:intergenic 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG + tig0006407:8880-8899 Msa1343420:intergenic 25.0%
!!! ATTTATACACTAGTCACTTT+TGG - tig0006407:9492-9511 Msa1343420:intron 25.0%
!!! TTTATACACTAGTCACTTTT+GGG - tig0006407:9493-9512 Msa1343420:intron 25.0%
! ATTGAAGAGTAAAACTTGTA+TGG + tig0006407:9754-9773 Msa1343420:intergenic 25.0%
! AATGTATAAAAGCAAGAGTT+AGG - tig0006407:9779-9798 Msa1343420:intron 25.0%
!! TTGATTAGTTGAGATATAAG+GGG + tig0006407:10013-10032 Msa1343420:intergenic 25.0%
! CATTCGATCAGATATTATAT+CGG + tig0006407:10310-10329 Msa1343420:intergenic 25.0%
! CCTTATCTTATCAAAATCTT+TGG + tig0006407:10443-10462 Msa1343420:intergenic 25.0%
!!! CCAAAGATTTTGATAAGATA+AGG - tig0006407:10440-10459 Msa1343420:intron 25.0%
! TGAACACCTAATAATAAAGA+GGG + tig0006407:10594-10613 Msa1343420:intergenic 25.0%
! ATGAACACCTAATAATAAAG+AGG + tig0006407:10595-10614 Msa1343420:intergenic 25.0%
! TTATTAGGTGTTCATTATGT+TGG - tig0006407:10600-10619 Msa1343420:intron 25.0%
! TAATGTTGACAAGTCATAAA+TGG + tig0006407:10702-10721 Msa1343420:intergenic 25.0%
! GTTGTAATTGCATACAAATT+TGG - tig0006407:10764-10783 Msa1343420:intron 25.0%
!! GATGTTCCAAAATATTTTCA+TGG - tig0006407:10949-10968 Msa1343420:intron 25.0%
!! TCTAAGCCATGAAAATATTT+TGG + tig0006407:10958-10977 Msa1343420:intergenic 25.0%
!! AATATACTATAGGTCCTTTT+GGG + tig0006407:11553-11572 Msa1343420:intergenic 25.0%
!! AAATATACTATAGGTCCTTT+TGG + tig0006407:11554-11573 Msa1343420:intergenic 25.0%
!!! CACATTTTAAGATTAGGTAA+GGG + tig0006407:11714-11733 Msa1343420:intergenic 25.0%
!!! ACACATTTTAAGATTAGGTA+AGG + tig0006407:11715-11734 Msa1343420:intergenic 25.0%
!!! AGTGTACATACTTTGTTTTT+TGG + tig0006407:12390-12409 Msa1343420:intergenic 25.0%
!!! ACTATGTTTACAGTTTTGAT+TGG - tig0006407:12407-12426 Msa1343420:CDS 25.0%
!!! CTATGTTTACAGTTTTGATT+GGG - tig0006407:12408-12427 Msa1343420:CDS 25.0%
!! TACTTTTATCATGTTCAGAT+GGG - tig0006407:12695-12714 Msa1343420:intron 25.0%
!!! TTGAAAGAAGACTTTAGTTT+TGG + tig0006407:12829-12848 Msa1343420:intergenic 25.0%
! AAAACTAAAGTCTTCTTTCA+AGG - tig0006407:12828-12847 Msa1343420:intron 25.0%
! ACACAAAACTATTGAATAGA+AGG + tig0006407:12882-12901 Msa1343420:intergenic 25.0%
!! TAATATTTTGTGACTTGAAC+AGG - tig0006407:12979-12998 Msa1343420:intron 25.0%
!! AATATTTTGTGACTTGAACA+GGG - tig0006407:12980-12999 Msa1343420:intron 25.0%
!! TTGTTCAATATGTTACTTGA+TGG + tig0006407:13089-13108 Msa1343420:intergenic 25.0%
! GTAATATCAAGTAGATAAAC+TGG + tig0006407:13134-13153 Msa1343420:intergenic 25.0%
!! ATATATTTTCCAAGTAACGA+AGG + tig0006407:13324-13343 Msa1343420:intergenic 25.0%
!!! ATTTTTGGGATTGTGACAAA+GGG + tig0006407:7040-7059 Msa1343420:intergenic 30.0%
!!! TATTTTTGGGATTGTGACAA+AGG + tig0006407:7041-7060 Msa1343420:intergenic 30.0%
ATGGAAAAGTAGTACTTAGT+CGG + tig0006407:7104-7123 Msa1343420:intergenic 30.0%
TGGGTCATATATATGTATGA+TGG + tig0006407:7123-7142 Msa1343420:intergenic 30.0%
ATTCAAGGCAAATCTCAAAT+GGG - tig0006407:7161-7180 Msa1343420:three_prime_UTR 30.0%
!! CTTTTTCATCAACTTCTACT+TGG - tig0006407:7218-7237 Msa1343420:CDS 30.0%
AGTAATGTAAGTAGCTTAAG+AGG - tig0006407:7254-7273 Msa1343420:CDS 30.0%
GTAATGTAAGTAGCTTAAGA+GGG - tig0006407:7255-7274 Msa1343420:CDS 30.0%
! CAATTTGTTCATAGGAAGTT+GGG - tig0006407:7304-7323 Msa1343420:CDS 30.0%
TAAATTCAGGATCAATGAAG+GGG + tig0006407:7367-7386 Msa1343420:intergenic 30.0%
!! TATTTGAGGTATTGTTTGTC+AGG + tig0006407:7410-7429 Msa1343420:intergenic 30.0%
AACAATACCTCAAATACTCT+TGG - tig0006407:7414-7433 Msa1343420:CDS 30.0%
! GTATTGGTACATAAATGTGA+GGG + tig0006407:7475-7494 Msa1343420:intergenic 30.0%
! TGTATTGGTACATAAATGTG+AGG + tig0006407:7476-7495 Msa1343420:intergenic 30.0%
ACACAAATACTACTTGGATT+AGG - tig0006407:7719-7738 Msa1343420:CDS 30.0%
GTAATCATATATGTTAGTGC+CGG + tig0006407:7774-7793 Msa1343420:intergenic 30.0%
! GGAAAGATTTTCTGAACAAA+TGG - tig0006407:7958-7977 Msa1343420:intron 30.0%
! AAGATTTTCTGAACAAATGG+AGG - tig0006407:7961-7980 Msa1343420:intron 30.0%
! AGATTTTCTGAACAAATGGA+GGG - tig0006407:7962-7981 Msa1343420:intron 30.0%
GGTAAGAAGATAATGTTTGT+GGG - tig0006407:7984-8003 Msa1343420:intron 30.0%
GCAACATAAAGAAACAAACA+AGG + tig0006407:8239-8258 Msa1343420:intergenic 30.0%
!! ATACACATGATATTTGGTGT+TGG + tig0006407:8320-8339 Msa1343420:intergenic 30.0%
CATGTGTATGTTTGGTATTA+CGG - tig0006407:8366-8385 Msa1343420:CDS 30.0%
! TTTGAAGAGTATGTTTGGTA+TGG + tig0006407:8493-8512 Msa1343420:intergenic 30.0%
!! GATTCACTTTTGGTTAAAAG+CGG - tig0006407:8710-8729 Msa1343420:intron 30.0%
! GAAGTTTATGTCAAAAGTGT+TGG - tig0006407:8787-8806 Msa1343420:intron 30.0%
!!! AAAAGTGTTGGATTCACTTT+TGG - tig0006407:8799-8818 Msa1343420:intron 30.0%
TGTATAAATAAAGGGGAAAG+TGG + tig0006407:9005-9024 Msa1343420:intergenic 30.0%
TTTGTGTGAAAAACCAAAGT+AGG - tig0006407:9035-9054 Msa1343420:intron 30.0%
! AAAACTGTTGGATTCACTTT+TGG - tig0006407:9141-9160 Msa1343420:intron 30.0%
TAAAAGTTTGCGTTACTTAC+AGG + tig0006407:9228-9247 Msa1343420:intergenic 30.0%
!! TGAAATGGGTCAGTTATTTT+GGG + tig0006407:9307-9326 Msa1343420:intergenic 30.0%
! TTGAAATGGGTCAGTTATTT+TGG + tig0006407:9308-9327 Msa1343420:intergenic 30.0%
TAGTGTGAGCAAAACTTATA+TGG - tig0006407:9656-9675 Msa1343420:intron 30.0%
GGTCACATGCATAAATAATT+TGG + tig0006407:9733-9752 Msa1343420:intergenic 30.0%
TACATGTCCACTATATTCTT+GGG + tig0006407:9850-9869 Msa1343420:intergenic 30.0%
! AAAGTGAAGATTCTTTTGCT+TGG - tig0006407:10191-10210 Msa1343420:intron 30.0%
TAAAGTTGAGAAAACATCTC+AGG - tig0006407:10278-10297 Msa1343420:intron 30.0%
GAACACCTAATAATAAAGAG+GGG + tig0006407:10593-10612 Msa1343420:intergenic 30.0%
GTAATTGCATACAAATTTGG+CGG - tig0006407:10767-10786 Msa1343420:intron 30.0%
! TCTAAAATCCTAATTATGGC+GGG + tig0006407:10920-10939 Msa1343420:intergenic 30.0%
! GTCTAAAATCCTAATTATGG+CGG + tig0006407:10921-10940 Msa1343420:intergenic 30.0%
! GGAGTCTAAAATCCTAATTA+TGG + tig0006407:10924-10943 Msa1343420:intergenic 30.0%
! TAATTAGGATTTTAGACTCC+TGG - tig0006407:10924-10943 Msa1343420:intron 30.0%
!!! AATATTTTGGAACATCTACC+AGG + tig0006407:10945-10964 Msa1343420:intergenic 30.0%
TATGAGATTAATCTTCGAGT+TGG - tig0006407:10991-11010 Msa1343420:intron 30.0%
AAAGTGAAAAAGAGATTCCA+TGG - tig0006407:11176-11195 Msa1343420:intron 30.0%
AAGTGAAAAAGAGATTCCAT+GGG - tig0006407:11177-11196 Msa1343420:intron 30.0%
TCTGTCAATACAGTAAGATA+AGG - tig0006407:11226-11245 Msa1343420:intron 30.0%
! TATAGGTGTAATTTTCGAAG+TGG - tig0006407:11345-11364 Msa1343420:intron 30.0%
GTGAGATATGTTTGTTTAAG+TGG - tig0006407:11367-11386 Msa1343420:intron 30.0%
!!! CGCTTTCAACACTTTTTTTT+GGG + tig0006407:11579-11598 Msa1343420:intergenic 30.0%
!!! ACGCTTTCAACACTTTTTTT+TGG + tig0006407:11580-11599 Msa1343420:intergenic 30.0%
AAAAACACGGTTAAACAACT+AGG + tig0006407:11831-11850 Msa1343420:intergenic 30.0%
ATTTCAGACTTCATCGAATA+GGG + tig0006407:11856-11875 Msa1343420:intergenic 30.0%
! AGTCAAATATCACGTTTTGA+CGG - tig0006407:11897-11916 Msa1343420:intron 30.0%
! TGCATTATGTTGTTTGTTAG+TGG - tig0006407:11929-11948 Msa1343420:intron 30.0%
TGTTATCACTCTTTAATAGC+TGG + tig0006407:11989-12008 Msa1343420:intergenic 30.0%
CGAATTATGTCAACCAAATA+AGG + tig0006407:12069-12088 Msa1343420:intergenic 30.0%
CAAACATACTGTTACTAGTT+AGG + tig0006407:12290-12309 Msa1343420:intergenic 30.0%
CTAACTAGTAACAGTATGTT+TGG - tig0006407:12288-12307 Msa1343420:intron 30.0%
! AAGCATACACGTAAAGTATT+AGG + tig0006407:12452-12471 Msa1343420:intergenic 30.0%
TAATACTTTACGTGTATGCT+TGG - tig0006407:12451-12470 Msa1343420:CDS 30.0%
!! CTACTTTTATCATGTTCAGA+TGG - tig0006407:12694-12713 Msa1343420:intron 30.0%
AGATGGGATTATATAAGAGA+TGG - tig0006407:12711-12730 Msa1343420:intron 30.0%
GATGGGATTATATAAGAGAT+GGG - tig0006407:12712-12731 Msa1343420:intron 30.0%
!!! AAGAAGACTTTAGTTTTGGT+AGG + tig0006407:12825-12844 Msa1343420:intergenic 30.0%
! ATATTTTGTGACTTGAACAG+GGG - tig0006407:12981-13000 Msa1343420:intron 30.0%
CAACCAAAAAATAGTTGTAG+TGG - tig0006407:13017-13036 Msa1343420:intron 30.0%
!!! TGTCCACTACAACTATTTTT+TGG + tig0006407:13023-13042 Msa1343420:intergenic 30.0%
! TTCAATATGTTACTTGATGG+AGG + tig0006407:13086-13105 Msa1343420:intergenic 30.0%
ATCTACATCCTCCAATGTTA+AGG + tig0006407:6874-6893 None:intergenic 35.0%
TTAACATTGGAGGATGTAGA+TGG - tig0006407:6873-6892 Msa1343420:three_prime_UTR 35.0%
CATTCAAGGCAAATCTCAAA+TGG - tig0006407:7160-7179 Msa1343420:three_prime_UTR 35.0%
AAAAAGCCAGTAGTAGCAAA+TGG - tig0006407:7278-7297 Msa1343420:CDS 35.0%
AAAAGCCAGTAGTAGCAAAT+GGG - tig0006407:7279-7298 Msa1343420:CDS 35.0%
! AATGGGTGCAATTTGTTCAT+AGG - tig0006407:7296-7315 Msa1343420:CDS 35.0%
! GCAATTTGTTCATAGGAAGT+TGG - tig0006407:7303-7322 Msa1343420:CDS 35.0%
AATCATAGAGAGGATAAGAC+GGG + tig0006407:7337-7356 Msa1343420:intergenic 35.0%
GAATCATAGAGAGGATAAGA+CGG + tig0006407:7338-7357 Msa1343420:intergenic 35.0%
AGGGTATATATACCTTGGTA+AGG + tig0006407:7456-7475 Msa1343420:intergenic 35.0%
! ATGTGAGGGTATATATACCT+TGG + tig0006407:7461-7480 Msa1343420:intergenic 35.0%
AGATTTGAACTCAGTCACTA+AGG + tig0006407:7652-7671 Msa1343420:intergenic 35.0%
ATTAGGCGTGCTATAATGTT+GGG - tig0006407:7736-7755 Msa1343420:CDS 35.0%
TGTTGGGTACATATTGTTTC+CGG - tig0006407:7752-7771 Msa1343420:CDS 35.0%
AATGAACACAAACTCAGACA+CGG + tig0006407:7843-7862 Msa1343420:intergenic 35.0%
!!! TTGTGTGTGTGTAGTTTTGA+CGG - tig0006407:7936-7955 Msa1343420:intron 35.0%
! GATTTTCTGAACAAATGGAG+GGG - tig0006407:7963-7982 Msa1343420:intron 35.0%
GGGTAAGAAGATAATGTTTG+TGG - tig0006407:7983-8002 Msa1343420:intron 35.0%
!! AAAAAGCTGGTCTTTGCATT+GGG + tig0006407:8068-8087 Msa1343420:intergenic 35.0%
!! TAAAAAGCTGGTCTTTGCAT+TGG + tig0006407:8069-8088 Msa1343420:intergenic 35.0%
! ATGCAAAGACCAGCTTTTTA+AGG - tig0006407:8069-8088 Msa1343420:intron 35.0%
TGGTGCATGATTCATTTCAT+TGG - tig0006407:8168-8187 Msa1343420:intron 35.0%
! AAACGTGTTGGATTCACTTT+TGG - tig0006407:8700-8719 Msa1343420:intron 35.0%
!!! TTGGATTCACTTTTGGCTTT+TGG - tig0006407:8806-8825 Msa1343420:intron 35.0%
AGAAAATGGGTCAGTTATTC+CGG + tig0006407:8866-8885 Msa1343420:intergenic 35.0%
CCAAAGTAGGTCAATTATAC+CGG - tig0006407:9048-9067 Msa1343420:intron 35.0%
CAAAGTAGGTCAATTATACC+GGG - tig0006407:9049-9068 Msa1343420:intron 35.0%
! TAAACTAACTTTAGTGGACC+TGG + tig0006407:9117-9136 Msa1343420:intergenic 35.0%
AGAAAATGGGTCAGTTATTC+CGG + tig0006407:8866-8885 Msa1343420:intergenic 35.0%
TCTGTGTGAAAAACCAAAGT+AGG - tig0006407:9441-9460 Msa1343420:intron 35.0%
CCAAAGTAGGTCAATTAAAC+CGG - tig0006407:9454-9473 Msa1343420:intron 35.0%
CAAAGTAGGTCAATTAAACC+GGG - tig0006407:9455-9474 Msa1343420:intron 35.0%
GTACATGTCCACTATATTCT+TGG + tig0006407:9851-9870 Msa1343420:intergenic 35.0%
GTGCATCAATTTGAAAATGG+AGG + tig0006407:9873-9892 Msa1343420:intergenic 35.0%
ACGGTGCATCAATTTGAAAA+TGG + tig0006407:9876-9895 Msa1343420:intergenic 35.0%
!!! GCTACTTTTGAAGAGTTTCA+TGG - tig0006407:10167-10186 Msa1343420:intron 35.0%
AATGAGTAATGACTTATCCC+TGG - tig0006407:10508-10527 Msa1343420:intron 35.0%
AGGATCCCCTCTTTATTATT+AGG - tig0006407:10585-10604 Msa1343420:intron 35.0%
TCGAAGATTAATCTCATAGC+GGG + tig0006407:10989-11008 Msa1343420:intergenic 35.0%
CTCGAAGATTAATCTCATAG+CGG + tig0006407:10990-11009 Msa1343420:intergenic 35.0%
! ACTATGAGTGGATTCATTGT+TGG - tig0006407:11403-11422 Msa1343420:intron 35.0%
!!! GTAGTGTTCCACTTTTTTGA+TGG - tig0006407:11479-11498 Msa1343420:intron 35.0%
!!! TTCCACTTTTTTGATGGTCT+TGG - tig0006407:11485-11504 Msa1343420:intron 35.0%
ATCCAAGACCATCAAAAAAG+TGG + tig0006407:11490-11509 Msa1343420:intergenic 35.0%
! GGTCTTGGATCATTAGTTTA+CGG - tig0006407:11500-11519 Msa1343420:intron 35.0%
! ATCATTAGTTTACGGCTCTA+AGG - tig0006407:11508-11527 Msa1343420:intron 35.0%
! TCATTAGTTTACGGCTCTAA+GGG - tig0006407:11509-11528 Msa1343420:intron 35.0%
!! GAAAGCGTTAGAGTGAATAT+CGG - tig0006407:11592-11611 Msa1343420:intron 35.0%
AGATTAGGTAAGGGATCATA+TGG + tig0006407:11705-11724 Msa1343420:intergenic 35.0%
ATCGAATAGGGTCAAAAACA+CGG + tig0006407:11844-11863 Msa1343420:intergenic 35.0%
GATTTCAGACTTCATCGAAT+AGG + tig0006407:11857-11876 Msa1343420:intergenic 35.0%
! ATGAAGTCTGAAATCCGTTA+GGG - tig0006407:11862-11881 Msa1343420:intron 35.0%
ACGTGATATTTGACTGACAA+GGG + tig0006407:11892-11911 Msa1343420:intergenic 35.0%
AACGTGATATTTGACTGACA+AGG + tig0006407:11893-11912 Msa1343420:intergenic 35.0%
TGGTATTAAATTGCATCGCA+TGG + tig0006407:11969-11988 Msa1343420:intergenic 35.0%
!! AGAGTGATAACATTTGGTGT+TGG - tig0006407:11997-12016 Msa1343420:intron 35.0%
GACATAATTCGAGAAAACGT+TGG - tig0006407:12078-12097 Msa1343420:intron 35.0%
TACATATGTGGTAGCAATTG+CGG - tig0006407:12579-12598 Msa1343420:intron 35.0%
GTCTAAACTAGTCAAGAACA+TGG - tig0006407:12734-12753 Msa1343420:intron 35.0%
CCTTATTGTATGCCACTAAA+CGG + tig0006407:12761-12780 Msa1343420:intergenic 35.0%
CGTTTAGTGGCATACAATAA+GGG - tig0006407:12759-12778 Msa1343420:intron 35.0%
GACAACTTCAACCATTATCA+GGG - tig0006407:13039-13058 Msa1343420:CDS 35.0%
TTACACTTCTCTCACAACTA+AGG - tig0006407:13150-13169 Msa1343420:CDS 35.0%
ACGAAGGAAAATGATCAACA+TGG + tig0006407:13308-13327 Msa1343420:intergenic 35.0%
! GATCATTTTCCTTCGTTACT+TGG - tig0006407:13312-13331 Msa1343420:five_prime_UTR 35.0%
GATGTAGATGGTTAGACCAA+TGG - tig0006407:6885-6904 Msa1343420:three_prime_UTR 40.0%
!!! TTGTGACAAAGGGTTTTGGA+TGG + tig0006407:7030-7049 Msa1343420:intergenic 40.0%
! TAGTACTTAGTCGGTTCTCT+TGG + tig0006407:7095-7114 Msa1343420:intergenic 40.0%
TGAAACTAGTGTGCTCTTGT+GGG + tig0006407:7142-7161 Msa1343420:intergenic 40.0%
ATGAAACTAGTGTGCTCTTG+TGG + tig0006407:7143-7162 Msa1343420:intergenic 40.0%
! GAGCACACTAGTTTCATTCA+AGG - tig0006407:7146-7165 Msa1343420:three_prime_UTR 40.0%
TTTGTTCATAGGAAGTTGGG+TGG - tig0006407:7307-7326 Msa1343420:CDS 40.0%
!! CAGGTTTCCAAGAGTATTTG+AGG + tig0006407:7424-7443 Msa1343420:intergenic 40.0%
GATTAGGCGTGCTATAATGT+TGG - tig0006407:7735-7754 Msa1343420:CDS 40.0%
!!! TGTGTGTGTGTAGTTTTGAC+GGG - tig0006407:7937-7956 Msa1343420:intron 40.0%
ATTCACTGAGTCTGAACATG+TGG - tig0006407:8009-8028 Msa1343420:intron 40.0%
TTCACTGAGTCTGAACATGT+GGG - tig0006407:8010-8029 Msa1343420:intron 40.0%
GTCTTGTATGATTCATGCGT+CGG - tig0006407:8040-8059 Msa1343420:intron 40.0%
TGCTTCTCTCCTTAAAAAGC+TGG + tig0006407:8081-8100 Msa1343420:intergenic 40.0%
AACGCATGGCGTAAATGAAA+AGG + tig0006407:8261-8280 Msa1343420:intergenic 40.0%
! TTTTCATTTACGCCATGCGT+TGG - tig0006407:8260-8279 Msa1343420:intron 40.0%
ATACTTGAAGAACCAACGCA+TGG + tig0006407:8275-8294 Msa1343420:intergenic 40.0%
! AGTGTTTCTGCAAATCATGG+TGG + tig0006407:8415-8434 Msa1343420:intergenic 40.0%
! CGTAGTGTTTCTGCAAATCA+TGG + tig0006407:8418-8437 Msa1343420:intergenic 40.0%
! TGGTGGATATGCTAGAATCA+TGG + tig0006407:8473-8492 Msa1343420:intergenic 40.0%
! GAAGAGTATGTTTGGTATGG+TGG + tig0006407:8490-8509 Msa1343420:intergenic 40.0%
CAAGTCTATGTCAAACGTGT+TGG - tig0006407:8688-8707 Msa1343420:intron 40.0%
GACATAAACTTCAGTAGACC+TGG + tig0006407:8779-8798 Msa1343420:intergenic 40.0%
GAAAATGGGTCAGTTATTCC+GGG + tig0006407:8865-8884 Msa1343420:intergenic 40.0%
CCGGTATAATTGACCTACTT+TGG + tig0006407:9051-9070 Msa1343420:intergenic 40.0%
GAAAATGGGTCAGTTATTCC+GGG + tig0006407:8865-8884 Msa1343420:intergenic 40.0%
CCGGTTTAATTGACCTACTT+TGG + tig0006407:9457-9476 Msa1343420:intergenic 40.0%
TCAATGGCCCAAGAATATAG+TGG - tig0006407:9840-9859 Msa1343420:intron 40.0%
!! GCATTAGCACTTAGCTTTGT+GGG + tig0006407:9958-9977 Msa1343420:intergenic 40.0%
!! AGCATTAGCACTTAGCTTTG+TGG + tig0006407:9959-9978 Msa1343420:intergenic 40.0%
TCCAACTTGTAATCACAGGT+TGG + tig0006407:10562-10581 Msa1343420:intergenic 40.0%
! AACCTGTGATTACAAGTTGG+AGG - tig0006407:10561-10580 Msa1343420:intron 40.0%
! ACCTGTGATTACAAGTTGGA+GGG - tig0006407:10562-10581 Msa1343420:intron 40.0%
GACTTGTCAACATTATTCCG+TGG - tig0006407:10707-10726 Msa1343420:intron 40.0%
TGTCAACATTATTCCGTGGA+TGG - tig0006407:10711-10730 Msa1343420:intron 40.0%
CTTTCTAACCCGCCATAATT+AGG - tig0006407:10909-10928 Msa1343420:intron 40.0%
!! TTAATCTTCGAGTTGGCAGT+AGG - tig0006407:10998-11017 Msa1343420:intron 40.0%
AAAAAGAGATTCCATGGGAC+AGG - tig0006407:11182-11201 Msa1343420:intron 40.0%
AAAGATTCAAACCTGTCCCA+TGG + tig0006407:11196-11215 Msa1343420:intergenic 40.0%
AATCCACTCATAGTCGATGT+TGG + tig0006407:11397-11416 Msa1343420:intergenic 40.0%
!! CATTAGTTTACGGCTCTAAG+GGG - tig0006407:11510-11529 Msa1343420:intron 40.0%
! ATACTATAGGTCCTTTTGGG+AGG + tig0006407:11550-11569 Msa1343420:intergenic 40.0%
TAGGTAAGGGATCATATGGT+AGG + tig0006407:11701-11720 Msa1343420:intergenic 40.0%
! GATGAAGTCTGAAATCCGTT+AGG - tig0006407:11861-11880 Msa1343420:intron 40.0%
ACTATACCGCACACCTTATT+TGG - tig0006407:12053-12072 Msa1343420:intron 40.0%
TGTCAACCAAATAAGGTGTG+CGG + tig0006407:12062-12081 Msa1343420:intergenic 40.0%
TGGAAATGCATGGAAAGGAA+TGG - tig0006407:12131-12150 Msa1343420:intron 40.0%
!!! ACATGCTGGTTTTCAACTCA+TGG - tig0006407:12154-12173 Msa1343420:intron 40.0%
! TGGTTTTCAACTCATGGCAT+TGG - tig0006407:12160-12179 Msa1343420:intron 40.0%
!! TTTTCAACTCATGGCATTGG+TGG - tig0006407:12163-12182 Msa1343420:intron 40.0%
TACGTGTATGCTTGGTATCA+CGG - tig0006407:12459-12478 Msa1343420:CDS 40.0%
CGGTGGATATGTTAAAAGCA+CGG + tig0006407:12542-12561 Msa1343420:intergenic 40.0%
GTAGCCTATGTTTGGTATCA+CGG + tig0006407:12562-12581 Msa1343420:intergenic 40.0%
CCACATATGTAGCCTATGTT+TGG + tig0006407:12570-12589 Msa1343420:intergenic 40.0%
CCAAACATAGGCTACATATG+TGG - tig0006407:12567-12586 Msa1343420:intron 40.0%
!! AATGGAAGTATCGGTGTACA+TGG + tig0006407:12625-12644 Msa1343420:intergenic 40.0%
CCGTTTAGTGGCATACAATA+AGG - tig0006407:12758-12777 Msa1343420:intron 40.0%
ACAATAAGGGATTGACCACT+TGG - tig0006407:12772-12791 Msa1343420:intron 40.0%
CAATAAGGGATTGACCACTT+GGG - tig0006407:12773-12792 Msa1343420:intron 40.0%
ATTGACCACTTGGGCTAAAT+GGG - tig0006407:12782-12801 Msa1343420:intron 40.0%
! GGCACTTACTGATAATGAGT+AGG + tig0006407:12861-12880 Msa1343420:intergenic 40.0%
GGACAACTTCAACCATTATC+AGG - tig0006407:13038-13057 Msa1343420:CDS 40.0%
GGATATGTTGACCCTGATAA+TGG + tig0006407:13053-13072 Msa1343420:intergenic 40.0%
GATCACCACTATAGGAAGAA+GGG + tig0006407:13187-13206 Msa1343420:intergenic 40.0%
TGATCACCACTATAGGAAGA+AGG + tig0006407:13188-13207 Msa1343420:intergenic 40.0%
TACCAGGATTACCTGATACT+TGG - tig0006407:13237-13256 Msa1343420:CDS 40.0%
TTCCAAGTATCAGGTAATCC+TGG + tig0006407:13242-13261 Msa1343420:intergenic 40.0%
ACATGTAGAGTGCAGCATAT+AGG + tig0006407:13271-13290 Msa1343420:intergenic 40.0%
! GGGATTGTGACAAAGGGTTT+TGG + tig0006407:7034-7053 Msa1343420:intergenic 45.0%
! TTGCACCCATTTGCTACTAC+TGG + tig0006407:7287-7306 Msa1343420:intergenic 45.0%
CTTGGTAAGGCACATGAATC+AGG + tig0006407:7443-7462 Msa1343420:intergenic 45.0%
CTGATTCATGTGCCTTACCA+AGG - tig0006407:7441-7460 Msa1343420:CDS 45.0%
ACAGTCTACAGTGACATTCC+AGG - tig0006407:8100-8119 Msa1343420:intron 45.0%
ATTATATACTCCCTCCGTCC+CGG - tig0006407:8844-8863 Msa1343420:intron 45.0%
GTAGGTCAATTATACCGGGA+CGG - tig0006407:9053-9072 Msa1343420:intron 45.0%
ATTTCATACTACCTCCGTCC+CGG + tig0006407:9070-9089 Msa1343420:intergenic 45.0%
GTAGGTCAATTAAACCGGGA+CGG - tig0006407:9459-9478 Msa1343420:intron 45.0%
AAATAATACTCCCTCCGTCC+CGG + tig0006407:9476-9495 Msa1343420:intergenic 45.0%
ACTTATCCCTGGAAGTTGAC+AGG - tig0006407:10519-10538 Msa1343420:intron 45.0%
! CTTGTAATCACAGGTTGGCA+TGG + tig0006407:10557-10576 Msa1343420:intergenic 45.0%
GCCAACCTGTGATTACAAGT+TGG - tig0006407:10558-10577 Msa1343420:intron 45.0%
TCCCTCCAACTTGTAATCAC+AGG + tig0006407:10566-10585 Msa1343420:intergenic 45.0%
! TGTGATTACAAGTTGGAGGG+AGG - tig0006407:10565-10584 Msa1343420:intron 45.0%
TTTCATACTACGGCCATCCA+CGG + tig0006407:10727-10746 Msa1343420:intergenic 45.0%
! TGTCCAACATCGACTATGAG+TGG - tig0006407:11391-11410 Msa1343420:intron 45.0%
! AGTCTGAAATCCGTTAGGGT+CGG - tig0006407:11866-11885 Msa1343420:intron 45.0%
!! TGGTGTTGGTGTATTTGTGC+AGG - tig0006407:12011-12030 Msa1343420:intron 45.0%
GGTGTATTTGTGCAGGACTA+TGG - tig0006407:12018-12037 Msa1343420:intron 45.0%
ACATTGGACTCTATTGTCGC+TGG - tig0006407:12111-12130 Msa1343420:intron 45.0%
CTATTGTCGCTGGAAATGCA+TGG - tig0006407:12121-12140 Msa1343420:intron 45.0%
ATGGAAAGGAATGGACATGC+TGG - tig0006407:12140-12159 Msa1343420:intron 45.0%
ACCCACAAAGGATCATCACA+GGG - tig0006407:12186-12205 Msa1343420:intron 45.0%
TTGATTGGGATGCGATTGCA+TGG - tig0006407:12422-12441 Msa1343420:CDS 45.0%
TCCACCGTGATACCAAACAT+AGG - tig0006407:12555-12574 Msa1343420:intron 45.0%
CAAGAACATGGACCGTTTAG+TGG - tig0006407:12746-12765 Msa1343420:intron 45.0%
GATTGACCACTTGGGCTAAA+TGG - tig0006407:12781-12800 Msa1343420:intron 45.0%
ATCAACCCATTTAGCCCAAG+TGG + tig0006407:12790-12809 Msa1343420:intergenic 45.0%
TTGTGACTTGAACAGGGGAA+AGG - tig0006407:12986-13005 Msa1343420:intron 45.0%
TCCTATAGTGGTGATCATGC+AGG - tig0006407:13191-13210 Msa1343420:CDS 45.0%
GTAATCCTGGTAAGCACCAA+TGG + tig0006407:13229-13248 Msa1343420:intergenic 45.0%
! AGGAGTTGGTTCCAAGTATC+AGG + tig0006407:13251-13270 Msa1343420:intergenic 45.0%
AGAGTGCAGCATATAGGAGT+TGG + tig0006407:13265-13284 Msa1343420:intergenic 45.0%
!!! ATAAATAATTTTTTTTTGAA+AGG + tig0006407:7618-7637 Msa1343420:intergenic 5.0%
!!! TAAAAATAAAAATTGATTTT+TGG - tig0006407:8548-8567 Msa1343420:intron 5.0%
!! AATATATTATATAAATTCAA+TGG - tig0006407:9824-9843 Msa1343420:intron 5.0%
!!! TATCATATTTTTTTTTATAA+AGG - tig0006407:10106-10125 Msa1343420:intron 5.0%
!!! ATCATATTTTTTTTTATAAA+GGG - tig0006407:10107-10126 Msa1343420:intron 5.0%
!! AAAATATATATTAAGATTTA+AGG - tig0006407:13335-13354 Msa1343420:five_prime_UTR 5.0%
!! AAATATATATTAAGATTTAA+GGG - tig0006407:13336-13355 Msa1343420:five_prime_UTR 5.0%
!! CTTGGTGTGGTGGGTGATAT+TGG + tig0006407:7077-7096 Msa1343420:intergenic 50.0%
! CTTAGTCGGTTCTCTTGGTG+TGG + tig0006407:7090-7109 Msa1343420:intergenic 50.0%
GGGCAGCTTGAATCATAGAG+AGG + tig0006407:7347-7366 Msa1343420:intergenic 50.0%
ATGGGTCAGTTATTCCGGGA+CGG + tig0006407:8861-8880 Msa1343420:intergenic 50.0%
TTTCTGTACTACCTCCGTCC+CGG - tig0006407:9250-9269 Msa1343420:intron 50.0%
ATGGGTCAGTTATTCCGGGA+CGG + tig0006407:8861-8880 Msa1343420:intergenic 50.0%
GTCAATTAAACCGGGACGGA+GGG - tig0006407:9463-9482 Msa1343420:intron 50.0%
CTCCTTGCAGCTGCACTTTA+CGG + tig0006407:9895-9914 Msa1343420:intergenic 50.0%
TCACAGCCTGTCAACTTCCA+GGG + tig0006407:10528-10547 Msa1343420:intergenic 50.0%
TGGAAGTTGACAGGCTGTGA+GGG - tig0006407:10528-10547 Msa1343420:intron 50.0%
!! ATAGGTCCTTTTGGGAGGCA+GGG + tig0006407:11545-11564 Msa1343420:intergenic 50.0%
!! TATAGGTCCTTTTGGGAGGC+AGG + tig0006407:11546-11565 Msa1343420:intergenic 50.0%
AAACAACTAGGACTCGCGAG+AGG + tig0006407:11819-11838 Msa1343420:intergenic 50.0%
CGTTGGACGAGTGCTTACAT+TGG - tig0006407:12095-12114 Msa1343420:intron 50.0%
GTCGCTGGAAATGCATGGAA+AGG - tig0006407:12126-12145 Msa1343420:intron 50.0%
GACCCACAAAGGATCATCAC+AGG - tig0006407:12185-12204 Msa1343420:intron 50.0%
CCCCTGTGATGATCCTTTGT+GGG + tig0006407:12190-12209 Msa1343420:intergenic 50.0%
CCCACAAAGGATCATCACAG+GGG - tig0006407:12187-12206 Msa1343420:intron 50.0%
ACCCCTGTGATGATCCTTTG+TGG + tig0006407:12191-12210 Msa1343420:intergenic 50.0%
GCCTATGTTTGGTATCACGG+TGG + tig0006407:12559-12578 Msa1343420:intergenic 50.0%
ACTTGAACAGGGGAAAGGAG+TGG - tig0006407:12991-13010 Msa1343420:intron 50.0%
TCAGGGTCAACATATCCAGC+AGG - tig0006407:13056-13075 Msa1343420:CDS 50.0%
GCACACCCTTCTTCCTATAG+TGG - tig0006407:13179-13198 Msa1343420:CDS 50.0%
GCCTGCATGATCACCACTAT+AGG + tig0006407:13195-13214 Msa1343420:intergenic 50.0%
CAGGCAATGATTGCAGCCAT+TGG - tig0006407:13210-13229 Msa1343420:CDS 50.0%
! GTCGGTTCTCTTGGTGTGGT+GGG + tig0006407:7086-7105 Msa1343420:intergenic 55.0%
! AGTCGGTTCTCTTGGTGTGG+TGG + tig0006407:7087-7106 Msa1343420:intergenic 55.0%
GTCAGTTATTCCGGGACGGA+GGG + tig0006407:8857-8876 Msa1343420:intergenic 55.0%
GGTCAATTATACCGGGACGG+AGG - tig0006407:9056-9075 Msa1343420:intron 55.0%
GGTCAATTAAACCGGGACGG+AGG - tig0006407:9462-9481 Msa1343420:intron 55.0%
CACCGTAAAGTGCAGCTGCA+AGG - tig0006407:9890-9909 Msa1343420:intron 55.0%
CTCACAGCCTGTCAACTTCC+AGG + tig0006407:10529-10548 Msa1343420:intergenic 55.0%
CTGGAAGTTGACAGGCTGTG+AGG - tig0006407:10527-10546 Msa1343420:intron 55.0%
!! TGGCATTGGTGGACCCACAA+AGG - tig0006407:12174-12193 Msa1343420:intron 55.0%
CTTGATGGAGGTAGACCTGC+TGG + tig0006407:13074-13093 Msa1343420:intergenic 55.0%
! TGCAGCCATTGGTGCTTACC+AGG - tig0006407:13221-13240 Msa1343420:CDS 55.0%
GGTCAGTTATTCCGGGACGG+AGG + tig0006407:8858-8877 Msa1343420:intergenic 60.0%
GGTCAGTTATTCCGGGACGG+AGG + tig0006407:8858-8877 Msa1343420:intergenic 60.0%
CTGTCTCCCTGCCTCCCAAA+AGG - tig0006407:11536-11555 Msa1343420:intron 60.0%
CTGACAAGGGCCGACCCTAA+CGG + tig0006407:11879-11898 Msa1343420:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0006407 gene 6871 13614 6871 ID=Msa1343420;Name=Msa1343420
tig0006407 mRNA 6871 13614 6871 ID=Msa1343420-mRNA-1;Parent=Msa1343420;Name=Msa1343420-mRNA-1;_AED=0.08;_eAED=0.08;_QI=308|1|1|1|1|1|5|322|360
tig0006407 exon 6871 7484 6871 ID=Msa1343420-mRNA-1:exon:4140;Parent=Msa1343420-mRNA-1
tig0006407 exon 7614 7772 7614 ID=Msa1343420-mRNA-1:exon:4139;Parent=Msa1343420-mRNA-1
tig0006407 exon 8277 8452 8277 ID=Msa1343420-mRNA-1:exon:4138;Parent=Msa1343420-mRNA-1
tig0006407 exon 12364 12535 12364 ID=Msa1343420-mRNA-1:exon:4137;Parent=Msa1343420-mRNA-1
tig0006407 exon 13023 13614 13023 ID=Msa1343420-mRNA-1:exon:4136;Parent=Msa1343420-mRNA-1
tig0006407 five_prime_UTR 13307 13614 13307 ID=Msa1343420-mRNA-1:five_prime_utr;Parent=Msa1343420-mRNA-1
tig0006407 CDS 13023 13306 13023 ID=Msa1343420-mRNA-1:cds;Parent=Msa1343420-mRNA-1
tig0006407 CDS 12364 12535 12364 ID=Msa1343420-mRNA-1:cds;Parent=Msa1343420-mRNA-1
tig0006407 CDS 8277 8452 8277 ID=Msa1343420-mRNA-1:cds;Parent=Msa1343420-mRNA-1
tig0006407 CDS 7614 7772 7614 ID=Msa1343420-mRNA-1:cds;Parent=Msa1343420-mRNA-1
tig0006407 CDS 7193 7484 7193 ID=Msa1343420-mRNA-1:cds;Parent=Msa1343420-mRNA-1
tig0006407 three_prime_UTR 6871 7192 6871 ID=Msa1343420-mRNA-1:three_prime_utr;Parent=Msa1343420-mRNA-1
Gene Sequence

>Msa1343420

ATGGGTTTCAGAGCAATTACTCTGCTTCTTCTATTCTCTCTTTTTCATCAACTTCTACTTGGTGAAGCAAAGTTCAGTAATGTAAGTAGCTTAAGAGGGAAAAAGCCAGTAGTAGCAAATGGGTGCAATTTGTTCATAGGAAGTTGGGTGGTTGACCCGTCTTATCCTCTCTATGATTCAAGCTGCCCCTTCATTGATCCTGAATTTAATTGTCAAAAATATGGAAGACCTGACAAACAATACCTCAAATACTCTTGGAAACCTGATTCATGTGCCTTACCAAGTTTTGACGGGAAAGATTTTCTGAACAAATGGAGGGGTAAGAAGATAATGTTTGTGGGTGATTCACTGAGTCTGAACATGTGGGAATCACTGTCTTGTATGATTCATGCGTCGGTGCCCAATGCAAAGACCAGCTTTTTAAGGAGAGAAGCACAGTCTACAGTGACATTCCAGGACTATGGAGTAACTATACAACTATACCGCACACCTTATTTGGTTGACATAATTCGAGAAAACGTTGGACGAGTGCTTACATTGGACTCTATTGTCGCTGGAAATGCATGGAAAGGAATGGACATGCTGGTTTTCAACTCATGGCATTGGTGGACCCACAAAGGATCATCACAGGGATGGGATTATATAAGAGATGGGTCTAAACTAGTCAAGAACATGGACCGTTTAGTGGCATACAATAAGGGATTGACCACTTGGGCTAAATGGGTTGATCTCAATGTTGATCCTACCAAAACTAAAGTCTTCTTTCAAGGCGTTTCTCCTACTCATTATCAGGGAAAGGAGTGGAATCAACCAAAAAATAGTTGTAGTGGACAACTTCAACCATTATCAGGGTCAACATATCCAGCAGGTCTACCTCCATCAAGTAACATATTGAACAATGTATTGAAGAGTATGAAAACACCAGTTTATCTACTTGATATTACACTTCTCTCACAACTAAGGAAAGATGCACACCCTTCTTCCTATAGTGGTGATCATGCAGGCAATGATTGCAGCCATTGGTGCTTACCAGGATTACCTGATACTTGGAACCAACTCCTATATGCTGCACTCTACATGTGA
Protein sequence

>Msa1343420

MGFRAITLLLLFSLFHQLLLGEAKFSNVSSLRGKKPVVANGCNLFIGSWVVDPSYPLYDSSCPFIDPEFNCQKYGRPDKQYLKYSWKPDSCALPSFDGKDFLNKWRGKKIMFVGDSLSLNMWESLSCMIHASVPNAKTSFLRREAQSTVTFQDYGVTIQLYRTPYLVDIIRENVGRVLTLDSIVAGNAWKGMDMLVFNSWHWWTHKGSSQGWDYIRDGSKLVKNMDRLVAYNKGLTTWAKWVDLNVDPTKTKVFFQGVSPTHYQGKEWNQPKNSCSGQLQPLSGSTYPAGLPPSSNILNNVLKSMKTPVYLLDITLLSQLRKDAHPSSYSGDHAGNDCSHWCLPGLPDTWNQLLYAALYM*