AlfalfaGEDB | Msa1343420

M. sativa cultivar zhongmu-4 / Msa1343420

KEGG: -
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554
PFAM: PF14416.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1343420	XP_003593750.1	97.778	360	8	0	1	360	1	360	0.0	732

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1343420	sp\|Q8VY22\|TBL38_ARATH	73.353	334	86	3	29	360	48	380	0.0	526

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1343420	G7IKB9	97.778	360	8	0	1	360	1	360	0.0	732

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0192920	Msa1343420	0.895996	5.634563e-76	-8.615850e-47
Msa0208810	Msa1343420	0.801939	7.107358e-49	-8.615850e-47
Msa0235120	Msa1343420	0.996074	4.189873e-223	-8.615850e-47
Msa0270170	Msa1343420	-0.803404	3.542890e-49	-8.615850e-47
Msa0313740	Msa1343420	0.975075	2.713566e-139	-8.615850e-47
Msa0380040	Msa1343420	0.806793	6.921276e-50	-8.615850e-47
Msa0428240	Msa1343420	0.809110	2.225011e-50	-8.615850e-47
Msa0429290	Msa1343420	0.826261	2.989780e-54	-8.615850e-47
Msa0475580	Msa1343420	0.820628	6.204376e-53	-8.615850e-47
Msa0517840	Msa1343420	0.800969	1.123083e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1343420	MtrunA17_Chr2g0283581	97.778	360	8	0	1	360	1	360	0.0	732
Msa1343420	MtrunA17_Chr4g0045951	70.765	366	99	4	1	360	1	364	0.0	536
Msa1343420	MtrunA17_Chr4g0045941	69.101	356	101	2	6	360	5	352	0.0	518
Msa1343420	MtrunA17_Chr2g0325481	64.087	323	114	2	38	359	46	367	4.41e-160	453
Msa1343420	MtrunA17_Chr4g0041011	59.155	355	139	4	7	358	12	363	4.82e-155	440
Msa1343420	MtrunA17_Chr3g0097891	56.056	355	146	4	7	358	3	350	2.01e-146	417
Msa1343420	MtrunA17_Chr2g0314801	56.918	318	133	3	42	355	33	350	4.85e-137	394
Msa1343420	MtrunA17_Chr3g0085071	55.486	319	139	3	42	358	46	363	1.30e-132	383
Msa1343420	MtrunA17_Chr5g0413851	53.846	351	155	5	12	358	12	359	4.81e-132	381
Msa1343420	MtrunA17_Chr3g0091031	54.658	322	143	3	39	358	28	348	8.17e-131	378

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1343420	AT1G29050.1	73.353	334	86	3	29	360	48	380	0.0	526
Msa1343420	AT2G34070.1	69.970	333	94	5	31	360	56	385	4.11e-179	502
Msa1343420	AT2G42570.1	61.774	327	124	1	34	359	39	365	3.07e-158	448
Msa1343420	AT2G31110.2	58.592	355	136	3	9	358	14	362	4.61e-153	435
Msa1343420	AT2G34070.2	71.032	252	70	3	111	360	1	251	1.32e-134	384
Msa1343420	AT3G14850.2	54.658	322	142	3	38	355	30	351	4.03e-130	377
Msa1343420	AT2G30900.1	50.549	364	168	8	2	359	9	366	1.66e-127	370
Msa1343420	AT1G78710.1	50.926	324	153	5	39	358	35	356	1.90e-123	360
Msa1343420	AT5G58600.1	50.149	335	149	6	42	358	66	400	2.15e-114	338
Msa1343420	AT2G30010.1	49.568	347	151	6	36	358	50	396	1.47e-111	331

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Find 107 sgRNAs with CRISPR-Local

Find 418 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTAAAGTCTTCTTTCA+AGG	0.374728	tig0006407:-7635	Msa1343420:CDS
AAAAGCCAGTAGTAGCAAAT+GGG	0.567471	tig0006407:-13184	Msa1343420:CDS
AAAATATATATTAAGATTTA+AGG	0.107054	tig0006407:-7128	Msa1343420:three_prime_UTR
AAAATCAAGTGTAAAATTAT+AGG	0.261207	tig0006407:-7101	Msa1343420:three_prime_UTR
AAATATATATTAAGATTTAA+GGG	0.410386	tig0006407:-7127	Msa1343420:three_prime_UTR
AACAATACCTCAAATACTCT+TGG	0.417652	tig0006407:-13049	Msa1343420:CDS
AATCATAGAGAGGATAAGAC+GGG	0.584204	tig0006407:+13129	Msa1343420:intergenic
AATGGGTGCAATTTGTTCAT+AGG	0.370881	tig0006407:-13167	Msa1343420:CDS
ACAATAAGGGATTGACCACT+TGG	0.475609	tig0006407:-7691	Msa1343420:CDS
ACAGTCTACAGTGACATTCC+AGG	0.428183	tig0006407:-12363	Msa1343420:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGGAAAAGTAGTACTTAGT+CGG	+	tig0006407:7104-7123	Msa1343420:intergenic	30.0%
TGGGTCATATATATGTATGA+TGG	+	tig0006407:7123-7142	Msa1343420:intergenic	30.0%
ATTCAAGGCAAATCTCAAAT+GGG	-	tig0006407:7161-7180	Msa1343420:three_prime_UTR	30.0%
AGTAATGTAAGTAGCTTAAG+AGG	-	tig0006407:7254-7273	Msa1343420:CDS	30.0%
GTAATGTAAGTAGCTTAAGA+GGG	-	tig0006407:7255-7274	Msa1343420:CDS	30.0%
TAAATTCAGGATCAATGAAG+GGG	+	tig0006407:7367-7386	Msa1343420:intergenic	30.0%
AACAATACCTCAAATACTCT+TGG	-	tig0006407:7414-7433	Msa1343420:CDS	30.0%
ACACAAATACTACTTGGATT+AGG	-	tig0006407:7719-7738	Msa1343420:CDS	30.0%
GTAATCATATATGTTAGTGC+CGG	+	tig0006407:7774-7793	Msa1343420:intergenic	30.0%
GGTAAGAAGATAATGTTTGT+GGG	-	tig0006407:7984-8003	Msa1343420:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0006407	gene	6871	13614	6871	ID=Msa1343420;Name=Msa1343420
tig0006407	mRNA	6871	13614	6871	ID=Msa1343420-mRNA-1;Parent=Msa1343420;Name=Msa1343420-mRNA-1;_AED=0.08;_eAED=0.08;_QI=308\|1\|1\|1\|1\|1\|5\|322\|360
tig0006407	exon	6871	7484	6871	ID=Msa1343420-mRNA-1:exon:4140;Parent=Msa1343420-mRNA-1
tig0006407	exon	7614	7772	7614	ID=Msa1343420-mRNA-1:exon:4139;Parent=Msa1343420-mRNA-1
tig0006407	exon	8277	8452	8277	ID=Msa1343420-mRNA-1:exon:4138;Parent=Msa1343420-mRNA-1
tig0006407	exon	12364	12535	12364	ID=Msa1343420-mRNA-1:exon:4137;Parent=Msa1343420-mRNA-1
tig0006407	exon	13023	13614	13023	ID=Msa1343420-mRNA-1:exon:4136;Parent=Msa1343420-mRNA-1
tig0006407	five_prime_UTR	13307	13614	13307	ID=Msa1343420-mRNA-1:five_prime_utr;Parent=Msa1343420-mRNA-1
tig0006407	CDS	13023	13306	13023	ID=Msa1343420-mRNA-1:cds;Parent=Msa1343420-mRNA-1
tig0006407	CDS	12364	12535	12364	ID=Msa1343420-mRNA-1:cds;Parent=Msa1343420-mRNA-1
tig0006407	CDS	8277	8452	8277	ID=Msa1343420-mRNA-1:cds;Parent=Msa1343420-mRNA-1
tig0006407	CDS	7614	7772	7614	ID=Msa1343420-mRNA-1:cds;Parent=Msa1343420-mRNA-1
tig0006407	CDS	7193	7484	7193	ID=Msa1343420-mRNA-1:cds;Parent=Msa1343420-mRNA-1
tig0006407	three_prime_UTR	6871	7192	6871	ID=Msa1343420-mRNA-1:three_prime_utr;Parent=Msa1343420-mRNA-1

Gene Sequence

>Msa1343420

ATGGGTTTCAGAGCAATTACTCTGCTTCTTCTATTCTCTCTTTTTCATCAACTTCTACTTGGTGAAGCAAAGTTCAGTAATGTAAGTAGCTTAAGAGGGAAAAAGCCAGTAGTAGCAAATGGGTGCAATTTGTTCATAGGAAGTTGGGTGGTTGACCCGTCTTATCCTCTCTATGATTCAAGCTGCCCCTTCATTGATCCTGAATTTAATTGTCAAAAATATGGAAGACCTGACAAACAATACCTCAAATACTCTTGGAAACCTGATTCATGTGCCTTACCAAGTTTTGACGGGAAAGATTTTCTGAACAAATGGAGGGGTAAGAAGATAATGTTTGTGGGTGATTCACTGAGTCTGAACATGTGGGAATCACTGTCTTGTATGATTCATGCGTCGGTGCCCAATGCAAAGACCAGCTTTTTAAGGAGAGAAGCACAGTCTACAGTGACATTCCAGGACTATGGAGTAACTATACAACTATACCGCACACCTTATTTGGTTGACATAATTCGAGAAAACGTTGGACGAGTGCTTACATTGGACTCTATTGTCGCTGGAAATGCATGGAAAGGAATGGACATGCTGGTTTTCAACTCATGGCATTGGTGGACCCACAAAGGATCATCACAGGGATGGGATTATATAAGAGATGGGTCTAAACTAGTCAAGAACATGGACCGTTTAGTGGCATACAATAAGGGATTGACCACTTGGGCTAAATGGGTTGATCTCAATGTTGATCCTACCAAAACTAAAGTCTTCTTTCAAGGCGTTTCTCCTACTCATTATCAGGGAAAGGAGTGGAATCAACCAAAAAATAGTTGTAGTGGACAACTTCAACCATTATCAGGGTCAACATATCCAGCAGGTCTACCTCCATCAAGTAACATATTGAACAATGTATTGAAGAGTATGAAAACACCAGTTTATCTACTTGATATTACACTTCTCTCACAACTAAGGAAAGATGCACACCCTTCTTCCTATAGTGGTGATCATGCAGGCAATGATTGCAGCCATTGGTGCTTACCAGGATTACCTGATACTTGGAACCAACTCCTATATGCTGCACTCTACATGTGA

Protein sequence

>Msa1343420

MGFRAITLLLLFSLFHQLLLGEAKFSNVSSLRGKKPVVANGCNLFIGSWVVDPSYPLYDSSCPFIDPEFNCQKYGRPDKQYLKYSWKPDSCALPSFDGKDFLNKWRGKKIMFVGDSLSLNMWESLSCMIHASVPNAKTSFLRREAQSTVTFQDYGVTIQLYRTPYLVDIIRENVGRVLTLDSIVAGNAWKGMDMLVFNSWHWWTHKGSSQGWDYIRDGSKLVKNMDRLVAYNKGLTTWAKWVDLNVDPTKTKVFFQGVSPTHYQGKEWNQPKNSCSGQLQPLSGSTYPAGLPPSSNILNNVLKSMKTPVYLLDITLLSQLRKDAHPSSYSGDHAGNDCSHWCLPGLPDTWNQLLYAALYM*