Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1010600 | XP_003621704.1 | 99.283 | 279 | 2 | 0 | 1 | 279 | 28 | 306 | 0.0 | 578 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1010600 | sp|Q9C5Z2|EIF3H_ARATH | 84.229 | 279 | 44 | 0 | 1 | 279 | 27 | 305 | 1.54e-175 | 491 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1010600 | A2Q5B8 | 99.283 | 279 | 2 | 0 | 1 | 279 | 28 | 306 | 0.0 | 578 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1010600 | Msa1052160 | 0.907120 | 7.139890e-81 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1010600 | MtrunA17_Chr7g0222191 | 99.283 | 279 | 2 | 0 | 1 | 279 | 28 | 306 | 0.0 | 578 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1010600 | AT1G10840.1 | 84.229 | 279 | 44 | 0 | 1 | 279 | 27 | 305 | 1.56e-176 | 491 |
| Msa1010600 | AT1G10840.2 | 83.945 | 218 | 35 | 0 | 62 | 279 | 1 | 218 | 3.13e-133 | 377 |
Find 100 sgRNAs with CRISPR-Local
Find 353 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCGGCCAGCGGCTTGAAAA+TGG | 0.195500 | 7_1:-13830434 | None:intergenic |
| CATCATTTCAAGCTGGTAAT+TGG | 0.226228 | 7_1:-13826787 | None:intergenic |
| TTGATGTTCTGCAGGGTTGC+TGG | 0.236004 | 7_1:+13830767 | Msa1010600:intron |
| TTAGTCACTGGACAACTTCT+TGG | 0.276228 | 7_1:+13826574 | Msa1010600:CDS |
| TCGATAGGGGATGAGGAAAA+AGG | 0.295172 | 7_1:-13825607 | None:intergenic |
| AGCTCTGCGTGCCATGTTAT+CGG | 0.309858 | 7_1:-13830371 | None:intergenic |
| TTCAGTTTCAATTCCATTAC+CGG | 0.316223 | 7_1:+13828899 | Msa1010600:intron |
| GATCTACAATCTTCAGTAGT+TGG | 0.317039 | 7_1:+13831075 | Msa1010600:three_prime_UTR |
| TCGGCCAGCGGCTTGAAAAT+GGG | 0.322632 | 7_1:-13830433 | None:intergenic |
| GGCTTGAAAATGGGGTTTGC+AGG | 0.323151 | 7_1:-13830424 | None:intergenic |
| TTCACTAATGGAGAGAAATA+TGG | 0.325096 | 7_1:+13828752 | Msa1010600:CDS |
| TCCTCTCTTTCTCCGGCGTT+AGG | 0.330499 | 7_1:+13825559 | Msa1010600:five_prime_UTR |
| TACAATGCTTAATTATCTTC+AGG | 0.338733 | 7_1:-13826534 | None:intergenic |
| TATTACCTGGTAATTCATAA+AGG | 0.352372 | 7_1:-13827012 | None:intergenic |
| AACATGGCACGCAGAGCTGC+TGG | 0.364111 | 7_1:+13830376 | Msa1010600:CDS |
| ATCTACAATCTTCAGTAGTT+GGG | 0.370067 | 7_1:+13831076 | Msa1010600:three_prime_UTR |
| GAAGCTTTCAGACTCATTCA+TGG | 0.372018 | 7_1:+13827823 | Msa1010600:CDS |
| CTTGTCCATTGAACAACAAA+AGG | 0.384746 | 7_1:+13828800 | Msa1010600:CDS |
| ACCCCTTGATCAGCCCTTGA+TGG | 0.392820 | 7_1:-13827782 | None:intergenic |
| ATTATCAACCAGTTCACTAA+TGG | 0.395048 | 7_1:+13828740 | Msa1010600:CDS |
| ATTTCTCTCCATTAGTGAAC+TGG | 0.398334 | 7_1:-13828748 | None:intergenic |
| CATAATATTCTCATCCATAT+AGG | 0.399466 | 7_1:-13830900 | None:intergenic |
| AAGGGATACCATACCGGAAA+AGG | 0.400259 | 7_1:-13826637 | None:intergenic |
| AATAGAGGATTATTGTTTCA+AGG | 0.403841 | 7_1:+13830929 | Msa1010600:three_prime_UTR |
| CCTCTCTTTCTCCGGCGTTA+GGG | 0.417369 | 7_1:+13825560 | Msa1010600:five_prime_UTR |
| TTGTAGTTTACCTGGGTGAC+TGG | 0.419136 | 7_1:-13828627 | None:intergenic |
| GCAGATGAGGGAAGAGGATG+AGG | 0.421135 | 7_1:+13826746 | Msa1010600:intron |
| TGATGTTCTGCAGGGTTGCT+GGG | 0.429580 | 7_1:+13830768 | Msa1010600:intron |
| CAGTCATAAAAGCACTGATA+AGG | 0.449414 | 7_1:-13828587 | None:intergenic |
| AGTTGTTCAGATGGAAGGAT+TGG | 0.452989 | 7_1:+13825837 | Msa1010600:exon |
| ATTGGAATCGGAATCGGAAT+CGG | 0.456190 | 7_1:-13825653 | None:intergenic |
| ACTCTCAAGTCGTGATGGTT+CGG | 0.456933 | 7_1:-13830452 | None:intergenic |
| CACTGGACAACTTCTTGGAT+TGG | 0.458201 | 7_1:+13826579 | Msa1010600:CDS |
| CAGTTTGATATGAGCCAAGC+AGG | 0.458895 | 7_1:-13826974 | None:intergenic |
| CCGGAGCTTGTCTCGTCAGC+AGG | 0.463217 | 7_1:+13828918 | Msa1010600:CDS |
| TCCATCTGAACAACTCTAAG+AGG | 0.468041 | 7_1:-13825829 | None:intergenic |
| AGCAGGCTCAGCAGCAAGCA+TGG | 0.469026 | 7_1:+13828935 | Msa1010600:CDS |
| ATGAGCCAAGCAGGGTAGAC+TGG | 0.471240 | 7_1:-13826965 | None:intergenic |
| GCATAATATATGACCCATCA+AGG | 0.475414 | 7_1:+13827768 | Msa1010600:CDS |
| CACTCACCTTCTTTAGTCAC+TGG | 0.478333 | 7_1:+13826562 | Msa1010600:CDS |
| GCAGGATCTTCCTCGGGTAA+AGG | 0.479465 | 7_1:-13830406 | None:intergenic |
| GAAGATAATTAAGCATTGTA+AGG | 0.480417 | 7_1:+13826537 | Msa1010600:CDS |
| GACGAGACAAGCTCCGGTAA+TGG | 0.482758 | 7_1:-13828912 | None:intergenic |
| GCTTCAACGCCTTCAGAGCT+AGG | 0.489562 | 7_1:-13827805 | None:intergenic |
| AATATTATGATGCACAATAG+AGG | 0.491658 | 7_1:+13830914 | Msa1010600:three_prime_UTR |
| CTTAGAGTTGTTCAGATGGA+AGG | 0.493585 | 7_1:+13825832 | Msa1010600:exon |
| GCCATGATTGGAATCGGAAT+CGG | 0.494291 | 7_1:-13825659 | None:intergenic |
| GTGAAAATCGATAGGGGATG+AGG | 0.495287 | 7_1:-13825614 | None:intergenic |
| CAACTTCTTGGATTGGATGT+TGG | 0.499911 | 7_1:+13826586 | Msa1010600:CDS |
| ATAGTAGCCATGATTGGAAT+CGG | 0.501292 | 7_1:-13825665 | None:intergenic |
| GGGGTTTGCAGGATCTTCCT+CGG | 0.502079 | 7_1:-13830413 | None:intergenic |
| TGAGGGAGAAGAACTTATCA+TGG | 0.503462 | 7_1:+13827967 | Msa1010600:CDS |
| TCAAGCTGTTGCAACGGAAG+AGG | 0.504590 | 7_1:+13825798 | Msa1010600:five_prime_UTR |
| AGTCATAAAAGCACTGATAA+GGG | 0.508843 | 7_1:-13828586 | None:intergenic |
| TAACAGACTTTATTTGCTGA+AGG | 0.513759 | 7_1:+13830799 | Msa1010600:CDS |
| CATATGAAATAATAGATTGA+GGG | 0.521229 | 7_1:+13827950 | Msa1010600:intron |
| AGTTGTCCAGTGACTAAAGA+AGG | 0.523423 | 7_1:-13826568 | None:intergenic |
| GACCCATCAAGGGCTGATCA+AGG | 0.524561 | 7_1:+13827779 | Msa1010600:CDS |
| ACCCATCAAGGGCTGATCAA+GGG | 0.525854 | 7_1:+13827780 | Msa1010600:CDS |
| ATCGGAATCGGAATCGGAAG+CGG | 0.526472 | 7_1:-13825647 | None:intergenic |
| ACATGGCACGCAGAGCTGCT+GGG | 0.528743 | 7_1:+13830377 | Msa1010600:CDS |
| GGGTTTGCAGGATCTTCCTC+GGG | 0.530656 | 7_1:-13830412 | None:intergenic |
| AGGGATACCATACCGGAAAA+GGG | 0.535713 | 7_1:-13826636 | None:intergenic |
| ATCATGGGTGGACATCTTCG+AGG | 0.535926 | 7_1:+13827983 | Msa1010600:CDS |
| CCCCTTGATCAGCCCTTGAT+GGG | 0.536856 | 7_1:-13827781 | None:intergenic |
| AGTCGTGATGGTTCGGCCAG+CGG | 0.542936 | 7_1:-13830445 | None:intergenic |
| TCCTCTTAGAGTTGTTCAGA+TGG | 0.548192 | 7_1:+13825828 | Msa1010600:exon |
| AGGTACCAGTCTACCCTGCT+TGG | 0.548620 | 7_1:+13826960 | Msa1010600:intron |
| AAGCATGGCTTCAGAAGAGA+AGG | 0.549881 | 7_1:+13828950 | Msa1010600:CDS |
| CATGGCACGCAGAGCTGCTG+GGG | 0.550315 | 7_1:+13830378 | Msa1010600:CDS |
| CCCTAACGCCGGAGAAAGAG+AGG | 0.550638 | 7_1:-13825560 | None:intergenic |
| AAATTTGCAGATGAGGGAAG+AGG | 0.550961 | 7_1:+13826740 | Msa1010600:intron |
| CCTGCTGACGAGACAAGCTC+CGG | 0.563447 | 7_1:-13828918 | None:intergenic |
| GCTGAAGGCTTTGCATGAGG+AGG | 0.564403 | 7_1:+13830814 | Msa1010600:exon |
| TGAAACCTTTATGAATTACC+AGG | 0.564604 | 7_1:+13827007 | Msa1010600:CDS |
| CCCATCAAGGGCTGATCAAG+GGG | 0.569340 | 7_1:+13827781 | Msa1010600:CDS |
| TTATTACAGGGCCGATAACA+TGG | 0.571182 | 7_1:+13830360 | Msa1010600:intron |
| AAATCGCTGTGAAAATCGAT+AGG | 0.578626 | 7_1:-13825622 | None:intergenic |
| AGCACCTCATCATTTCAAGC+TGG | 0.578673 | 7_1:-13826794 | None:intergenic |
| AATCGCTGTGAAAATCGATA+GGG | 0.579779 | 7_1:-13825621 | None:intergenic |
| TCAAGGGGTCCTAGCTCTGA+AGG | 0.582181 | 7_1:+13827796 | Msa1010600:CDS |
| AATGTGGACAATAATACCGT+TGG | 0.593681 | 7_1:+13826828 | Msa1010600:CDS |
| TTTGCTGAAGGCTTTGCATG+AGG | 0.596130 | 7_1:+13830811 | Msa1010600:exon |
| ATTTCTTCAAGCTGTTGCAA+CGG | 0.609939 | 7_1:+13825792 | Msa1010600:five_prime_UTR |
| AGGAAACTCTCAAGTCGTGA+TGG | 0.615644 | 7_1:-13830457 | None:intergenic |
| ACCTGATACTCCAGTCACCC+AGG | 0.616375 | 7_1:+13828617 | Msa1010600:CDS |
| GGAGAAGAACTTATCATGGG+TGG | 0.622548 | 7_1:+13827971 | Msa1010600:CDS |
| CATAATATATGACCCATCAA+GGG | 0.628074 | 7_1:+13827769 | Msa1010600:CDS |
| GAGGGAGAAGAACTTATCAT+GGG | 0.629094 | 7_1:+13827968 | Msa1010600:CDS |
| ATTACCAGCTTGAAATGATG+AGG | 0.641532 | 7_1:+13826790 | Msa1010600:CDS |
| GGAAGAAGAAACCCTAACGC+CGG | 0.645805 | 7_1:-13825571 | None:intergenic |
| TGGACAATAATACCGTTGGA+TGG | 0.649223 | 7_1:+13826832 | Msa1010600:CDS |
| ATCGCTGTGAAAATCGATAG+GGG | 0.660542 | 7_1:-13825620 | None:intergenic |
| AAATCATACATACCATCCAA+CGG | 0.673715 | 7_1:-13826844 | None:intergenic |
| TGGGGAAGAGCCTTTACCCG+AGG | 0.681168 | 7_1:+13830396 | Msa1010600:CDS |
| GCTTGGCTCATATCAAACTG+TGG | 0.682062 | 7_1:+13826977 | Msa1010600:CDS |
| AGTTTGATATGAGCCAAGCA+GGG | 0.685374 | 7_1:-13826973 | None:intergenic |
| GATGAGGAAATTGAAGCTGA+TGG | 0.687478 | 7_1:+13826762 | Msa1010600:CDS |
| AATGATGAGGTGCTTGAGAG+AGG | 0.697805 | 7_1:+13826803 | Msa1010600:CDS |
| GTGCTTGAGAGAGGTCAATG+TGG | 0.716267 | 7_1:+13826812 | Msa1010600:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATCAATAGAAAAATTATT+TGG | - | chr7_1:13828285-13828304 | None:intergenic | 10.0% |
| !! | ACATTTGTTTATAAAATAAA+AGG | - | chr7_1:13830271-13830290 | None:intergenic | 10.0% |
| !!! | TTTTATTTTATAAACAAATG+TGG | + | chr7_1:13830270-13830289 | Msa1010600:intron | 10.0% |
| !! | TTTGTAATTTCATATGTTTA+TGG | + | chr7_1:13826035-13826054 | Msa1010600:intron | 15.0% |
| !!! | TTGTTTTCTTAAAATGATAT+AGG | + | chr7_1:13826063-13826082 | Msa1010600:intron | 15.0% |
| !! | AAATAAACGAATAAAAAGAA+GGG | - | chr7_1:13826658-13826677 | None:intergenic | 15.0% |
| !! | AAAATAAACGAATAAAAAGA+AGG | - | chr7_1:13826659-13826678 | None:intergenic | 15.0% |
| !!! | TTTTTAACGATTTAATAATC+TGG | + | chr7_1:13827685-13827704 | Msa1010600:intron | 15.0% |
| !!! | ACTAAATTTAAAATAGACAA+AGG | - | chr7_1:13828668-13828687 | None:intergenic | 15.0% |
| !!! | TCCATTATTTTTTTATTGTA+AGG | + | chr7_1:13829026-13829045 | Msa1010600:intron | 15.0% |
| !! | ACCTTACAATAAAAAAATAA+TGG | - | chr7_1:13829030-13829049 | None:intergenic | 15.0% |
| !! | AATTAGTGAAGAGAAAAAAT+CGG | - | chr7_1:13825730-13825749 | None:intergenic | 20.0% |
| !! | TGAAAAATGTTGTCTTTATT+TGG | + | chr7_1:13825935-13825954 | Msa1010600:intron | 20.0% |
| !!! | GAAAAATGTTGTCTTTATTT+GGG | + | chr7_1:13825936-13825955 | Msa1010600:intron | 20.0% |
| !!! | AAAAATGTTGTCTTTATTTG+GGG | + | chr7_1:13825937-13825956 | Msa1010600:intron | 20.0% |
| !!! | TTTTGATAGGTTTTATTGTT+TGG | + | chr7_1:13825960-13825979 | Msa1010600:intron | 20.0% |
| !! | AATAAGCTGAAAACAATTTA+TGG | + | chr7_1:13826273-13826292 | Msa1010600:intron | 20.0% |
| !! | ACTTATTAGAGTTTATCTAT+TGG | - | chr7_1:13826356-13826375 | None:intergenic | 20.0% |
| !! | AAATACTTTACAAACATACA+AGG | - | chr7_1:13826407-13826426 | None:intergenic | 20.0% |
| !! | ATAAATCAAGAAATATTACC+TGG | - | chr7_1:13827028-13827047 | None:intergenic | 20.0% |
| !! | TGTATAGTTATATGTTATTG+TGG | + | chr7_1:13827093-13827112 | Msa1010600:intron | 20.0% |
| !! | CACATTAAATAGTAAATTAC+AGG | - | chr7_1:13827131-13827150 | None:intergenic | 20.0% |
| !! | TTAATTTAAGAATGTCCAAA+AGG | + | chr7_1:13827258-13827277 | Msa1010600:intron | 20.0% |
| !! | AAAAGATTATACCATTTGAT+TGG | + | chr7_1:13827307-13827326 | Msa1010600:intron | 20.0% |
| !!! | TCAAACTATTAATGTTTTTC+AGG | + | chr7_1:13827724-13827743 | Msa1010600:intron | 20.0% |
| !! | TCATATGAAATAATAGATTG+AGG | + | chr7_1:13827949-13827968 | Msa1010600:intron | 20.0% |
| !! | CATATGAAATAATAGATTGA+GGG | + | chr7_1:13827950-13827969 | Msa1010600:intron | 20.0% |
| !!! | TGATCACTTTATATTTTCAT+CGG | - | chr7_1:13828145-13828164 | None:intergenic | 20.0% |
| !!! | TGTTTAGATTTTCATTTAGT+TGG | + | chr7_1:13828825-13828844 | Msa1010600:intron | 20.0% |
| !!! | GTTTAGATTTTCATTTAGTT+GGG | + | chr7_1:13828826-13828845 | Msa1010600:intron | 20.0% |
| !!! | TTTAGATTTTCATTTAGTTG+GGG | + | chr7_1:13828827-13828846 | Msa1010600:intron | 20.0% |
| !! | TTTCATGTCATAAATTCAAT+TGG | + | chr7_1:13829334-13829353 | Msa1010600:intron | 20.0% |
| !! | TTCATGTCATAAATTCAATT+GGG | + | chr7_1:13829335-13829354 | Msa1010600:intron | 20.0% |
| !!! | AAGGATTGTAATTACATTTT+TGG | + | chr7_1:13829410-13829429 | Msa1010600:intron | 20.0% |
| !!! | AGGATTGTAATTACATTTTT+GGG | + | chr7_1:13829411-13829430 | Msa1010600:intron | 20.0% |
| !!! | TTTGATTTAGCAAATTTAGA+TGG | + | chr7_1:13829466-13829485 | Msa1010600:intron | 20.0% |
| !! | TTCAAAATTACATAGCTTAA+GGG | - | chr7_1:13829891-13829910 | None:intergenic | 20.0% |
| !!! | TATTGCATTTTTCTTTTGTA+TGG | + | chr7_1:13830245-13830264 | Msa1010600:intron | 20.0% |
| !! | AAGATATATACCACTAATAA+GGG | - | chr7_1:13830705-13830724 | None:intergenic | 20.0% |
| !! | AAAGATATATACCACTAATA+AGG | - | chr7_1:13830706-13830725 | None:intergenic | 20.0% |
| !!! | ATGTAATATCTTTTCCTATA+TGG | + | chr7_1:13830886-13830905 | Msa1010600:three_prime_UTR | 20.0% |
| !! | GAAGAAAAACAAAAATTACT+TGG | - | chr7_1:13830955-13830974 | None:intergenic | 20.0% |
| !! | AAAAACAATTAACTAGCAAA+AGG | - | chr7_1:13831051-13831070 | None:intergenic | 20.0% |
| !! | TAAGTAACTTTTAGCATTGT+AGG | + | chr7_1:13826106-13826125 | Msa1010600:intron | 25.0% |
| ! | TTAAGTTCTTTAACCAAACA+TGG | - | chr7_1:13826171-13826190 | None:intergenic | 25.0% |
| !! | TTTGTAAAGTATTTGAAGCA+TGG | + | chr7_1:13826413-13826432 | Msa1010600:intron | 25.0% |
| !! | AGATAATTTTCAAACCATTC+TGG | + | chr7_1:13826477-13826496 | Msa1010600:intron | 25.0% |
| ! | TACAATGCTTAATTATCTTC+AGG | - | chr7_1:13826537-13826556 | None:intergenic | 25.0% |
| !! | GAAGATAATTAAGCATTGTA+AGG | + | chr7_1:13826537-13826556 | Msa1010600:CDS | 25.0% |
| ! | ATTTCAAAAATTTGCAGATG+AGG | + | chr7_1:13826733-13826752 | Msa1010600:intron | 25.0% |
| ! | TTTCAAAAATTTGCAGATGA+GGG | + | chr7_1:13826734-13826753 | Msa1010600:intron | 25.0% |
| ! | TAATCACTTATCTAACATGA+TGG | + | chr7_1:13826921-13826940 | Msa1010600:intron | 25.0% |
| ! | TATTACCTGGTAATTCATAA+AGG | - | chr7_1:13827015-13827034 | None:intergenic | 25.0% |
| !! | TCAAATGGTATAATCTTTTG+TGG | - | chr7_1:13827306-13827325 | None:intergenic | 25.0% |
| ! | AATTATCAGTTAATCGTTAG+AGG | - | chr7_1:13827414-13827433 | None:intergenic | 25.0% |
| ! | TATTCATAAATGTGTGACAA+CGG | + | chr7_1:13827623-13827642 | Msa1010600:intron | 25.0% |
| !! | TGTTGAAATTTAGAATGTGT+AGG | + | chr7_1:13828323-13828342 | Msa1010600:intron | 25.0% |
| ! | TAAGCAGTTCAGAATTAAAT+AGG | - | chr7_1:13828519-13828538 | None:intergenic | 25.0% |
| ! | CAAAATATTGTAGTTTACCT+GGG | - | chr7_1:13828637-13828656 | None:intergenic | 25.0% |
| ! | TTGTAGTACAAAATTGACAA+GGG | - | chr7_1:13829438-13829457 | None:intergenic | 25.0% |
| ! | ATTGTAGTACAAAATTGACA+AGG | - | chr7_1:13829439-13829458 | None:intergenic | 25.0% |
| ! | TTTAGATGGTTTGAAGATAA+AGG | + | chr7_1:13829480-13829499 | Msa1010600:intron | 25.0% |
| ! | CTTCAAAATTACATAGCTTA+AGG | - | chr7_1:13829892-13829911 | None:intergenic | 25.0% |
| ! | ATAATAGACTGAACTAATTG+AGG | - | chr7_1:13830326-13830345 | None:intergenic | 25.0% |
| ! | TCAATTAGTTCAGTCTATTA+TGG | + | chr7_1:13830325-13830344 | Msa1010600:intron | 25.0% |
| !!! | TTTCGGTTTTTGTTATTACA+GGG | + | chr7_1:13830348-13830367 | Msa1010600:intron | 25.0% |
| !!! | TGGAAATTTGATTTGTTATG+AGG | - | chr7_1:13830480-13830499 | None:intergenic | 25.0% |
| !! | TAAAAACATACCCATTGATT+TGG | - | chr7_1:13830513-13830532 | None:intergenic | 25.0% |
| !!! | GGTATGTTTTTAGATTTTGA+TGG | + | chr7_1:13830521-13830540 | Msa1010600:intron | 25.0% |
| ! | TTTAAGAGTAACCTTTAACT+TGG | - | chr7_1:13830550-13830569 | None:intergenic | 25.0% |
| !!! | TATGGTTTTGGTTATTTTAG+TGG | - | chr7_1:13830604-13830623 | None:intergenic | 25.0% |
| ! | AAAACCTGATTAAAACTTTC+TGG | + | chr7_1:13830674-13830693 | Msa1010600:intron | 25.0% |
| ! | CATAATATTCTCATCCATAT+AGG | - | chr7_1:13830903-13830922 | None:intergenic | 25.0% |
| ! | AATATTATGATGCACAATAG+AGG | + | chr7_1:13830914-13830933 | Msa1010600:three_prime_UTR | 25.0% |
| ! | AATAGAGGATTATTGTTTCA+AGG | + | chr7_1:13830929-13830948 | Msa1010600:three_prime_UTR | 25.0% |
| TTACTTATAGTAGCCATGAT+TGG | - | chr7_1:13825674-13825693 | None:intergenic | 30.0% | |
| GAAAAAATCGGAAAAAAGAG+AGG | - | chr7_1:13825718-13825737 | None:intergenic | 30.0% | |
| !! | TCTTTATTTGGGGTTTTGAT+AGG | + | chr7_1:13825947-13825966 | Msa1010600:intron | 30.0% |
| !!! | GGTTTTATTGTTTGGAATTG+CGG | + | chr7_1:13825968-13825987 | Msa1010600:intron | 30.0% |
| !! | GTTTTATTGTTTGGAATTGC+GGG | + | chr7_1:13825969-13825988 | Msa1010600:intron | 30.0% |
| ! | TGTTTTCAGCTTATTTCCAT+AGG | - | chr7_1:13826268-13826287 | None:intergenic | 30.0% |
| TCTAATAAGTCAATCCAAAC+TGG | + | chr7_1:13826366-13826385 | Msa1010600:intron | 30.0% | |
| AAATCATACATACCATCCAA+CGG | - | chr7_1:13826847-13826866 | None:intergenic | 30.0% | |
| CCAAATCATACATATGTAAG+TGG | - | chr7_1:13826878-13826897 | None:intergenic | 30.0% | |
| CCACTTACATATGTATGATT+TGG | + | chr7_1:13826875-13826894 | Msa1010600:intron | 30.0% | |
| ATGGATAATTCTCTGAATCT+AGG | + | chr7_1:13826940-13826959 | Msa1010600:intron | 30.0% | |
| TGAAACCTTTATGAATTACC+AGG | + | chr7_1:13827007-13827026 | Msa1010600:CDS | 30.0% | |
| TATACAAATCCACAAAACTC+TGG | - | chr7_1:13827079-13827098 | None:intergenic | 30.0% | |
| GCTTCTAAGTTATTCAATCT+TGG | + | chr7_1:13827178-13827197 | Msa1010600:intron | 30.0% | |
| TTGCAATAACCTTTCAGTAA+TGG | - | chr7_1:13827213-13827232 | None:intergenic | 30.0% | |
| ATGATAAGTAGCCAATCAAA+TGG | - | chr7_1:13827321-13827340 | None:intergenic | 30.0% | |
| CATAATATATGACCCATCAA+GGG | + | chr7_1:13827769-13827788 | Msa1010600:CDS | 30.0% | |
| ! | TATCGCAGCAATAATTTTAC+TGG | + | chr7_1:13827851-13827870 | Msa1010600:CDS | 30.0% |
| TGATCAAAACACATTCATCA+TGG | + | chr7_1:13828159-13828178 | Msa1010600:intron | 30.0% | |
| GGATTGTAGTATAAGAATCT+TGG | + | chr7_1:13828183-13828202 | Msa1010600:intron | 30.0% | |
| TGATCAAAACACATTCATCA+TGG | + | chr7_1:13828159-13828178 | Msa1010600:intron | 30.0% | |
| TGTCAACTAGACTATAATCT+TGG | + | chr7_1:13828487-13828506 | Msa1010600:intron | 30.0% | |
| GTTCAGAATTAAATAGGAAG+TGG | - | chr7_1:13828513-13828532 | None:intergenic | 30.0% | |
| !! | AGTCATAAAAGCACTGATAA+GGG | - | chr7_1:13828589-13828608 | None:intergenic | 30.0% |
| GCAAAATATTGTAGTTTACC+TGG | - | chr7_1:13828638-13828657 | None:intergenic | 30.0% | |
| ATTATCAACCAGTTCACTAA+TGG | + | chr7_1:13828740-13828759 | Msa1010600:CDS | 30.0% | |
| TTCACTAATGGAGAGAAATA+TGG | + | chr7_1:13828752-13828771 | Msa1010600:CDS | 30.0% | |
| !! | GGAATTTTTGATTGAATGCA+TGG | + | chr7_1:13828773-13828792 | Msa1010600:CDS | 30.0% |
| !!! | ACAAACCTTTTGTTGTTCAA+TGG | - | chr7_1:13828808-13828827 | None:intergenic | 30.0% |
| TTCAGTTTCAATTCCATTAC+CGG | + | chr7_1:13828899-13828918 | Msa1010600:intron | 30.0% | |
| GAAGATTATGTGTTAACGTA+TGG | - | chr7_1:13829059-13829078 | None:intergenic | 30.0% | |
| TGATTTAGCATTCTGATACA+CGG | - | chr7_1:13829189-13829208 | None:intergenic | 30.0% | |
| TATCAGAATGCTAAATCAAC+TGG | + | chr7_1:13829191-13829210 | Msa1010600:intron | 30.0% | |
| ATCAGAATGCTAAATCAACT+GGG | + | chr7_1:13829192-13829211 | Msa1010600:intron | 30.0% | |
| GTAGATAGGTTTCAATATGA+TGG | + | chr7_1:13829234-13829253 | Msa1010600:intron | 30.0% | |
| !!! | AGTTTTTTGAAAAGCGTTGT+AGG | + | chr7_1:13829514-13829533 | Msa1010600:intron | 30.0% |
| ! | TTAGGAGTATGCTAGAAATT+TGG | + | chr7_1:13829578-13829597 | Msa1010600:intron | 30.0% |
| GAAATTTGGACTAAACGTTA+AGG | + | chr7_1:13829592-13829611 | Msa1010600:intron | 30.0% | |
| GATTTACACGAAAATTTACC+TGG | + | chr7_1:13829620-13829639 | Msa1010600:intron | 30.0% | |
| !! | GCTATGTAATTTTGAAGATG+CGG | + | chr7_1:13829895-13829914 | Msa1010600:intron | 30.0% |
| !! | CTATGTAATTTTGAAGATGC+GGG | + | chr7_1:13829896-13829915 | Msa1010600:intron | 30.0% |
| ! | TGTGATGTATCTTAGGATTT+TGG | + | chr7_1:13829919-13829938 | Msa1010600:intron | 30.0% |
| ! | GTGATGTATCTTAGGATTTT+GGG | + | chr7_1:13829920-13829939 | Msa1010600:intron | 30.0% |
| TTGTGAAGATCGAAATTCAT+TGG | - | chr7_1:13830155-13830174 | None:intergenic | 30.0% | |
| AGTTCAGTCTATTATGGTTT+CGG | + | chr7_1:13830331-13830350 | Msa1010600:intron | 30.0% | |
| !!! | GTTTCGGTTTTTGTTATTAC+AGG | + | chr7_1:13830347-13830366 | Msa1010600:intron | 30.0% |
| GTTCAATTAGTTGAATTGTC+CGG | + | chr7_1:13830641-13830660 | Msa1010600:intron | 30.0% | |
| !!! | TCAGGTTTTAAAAACTGAAC+CGG | - | chr7_1:13830663-13830682 | None:intergenic | 30.0% |
| !! | AACACCAGAAAGTTTTAATC+AGG | - | chr7_1:13830681-13830700 | None:intergenic | 30.0% |
| ! | TAACAGACTTTATTTGCTGA+AGG | + | chr7_1:13830799-13830818 | Msa1010600:CDS | 30.0% |
| ATCTACAATCTTCAGTAGTT+GGG | + | chr7_1:13831076-13831095 | Msa1010600:three_prime_UTR | 30.0% | |
| !! | TTTTTGGTGAGTGGTGTATT+GGG | - | chr7_1:13825538-13825557 | None:intergenic | 35.0% |
| AATCGCTGTGAAAATCGATA+GGG | - | chr7_1:13825624-13825643 | None:intergenic | 35.0% | |
| AAATCGCTGTGAAAATCGAT+AGG | - | chr7_1:13825625-13825644 | None:intergenic | 35.0% | |
| ATAGTAGCCATGATTGGAAT+CGG | - | chr7_1:13825668-13825687 | None:intergenic | 35.0% | |
| TCGGAAAAAAGAGAGGAAAA+TGG | - | chr7_1:13825711-13825730 | None:intergenic | 35.0% | |
| TGCGAAAAACGAATCAACAA+TGG | - | chr7_1:13825758-13825777 | None:intergenic | 35.0% | |
| ATTTCTTCAAGCTGTTGCAA+CGG | + | chr7_1:13825792-13825811 | Msa1010600:five_prime_UTR | 35.0% | |
| !! | TCTCTGTTTGATTTTGCATC+TGG | + | chr7_1:13825992-13826011 | Msa1010600:intron | 35.0% |
| !! | CTCTGTTTGATTTTGCATCT+GGG | + | chr7_1:13825993-13826012 | Msa1010600:intron | 35.0% |
| ACTAACATAAACCAGGAAAG+AGG | - | chr7_1:13826142-13826161 | None:intergenic | 35.0% | |
| TCTTTAACCAAACATGGTCA+TGG | - | chr7_1:13826165-13826184 | None:intergenic | 35.0% | |
| AAGCTATTAAAGAGAGCCTA+TGG | + | chr7_1:13826249-13826268 | Msa1010600:intron | 35.0% | |
| AGATTGTTTGAGTGAGCTTA+TGG | - | chr7_1:13826319-13826338 | None:intergenic | 35.0% | |
| CATACAAGGCTACATGAAAT+GGG | - | chr7_1:13826393-13826412 | None:intergenic | 35.0% | |
| ACATACAAGGCTACATGAAA+TGG | - | chr7_1:13826394-13826413 | None:intergenic | 35.0% | |
| AACCAAAAGATAACACCATC+AGG | - | chr7_1:13826504-13826523 | None:intergenic | 35.0% | |
| !! | GGTGTTATCTTTTGGTTAAC+AGG | + | chr7_1:13826507-13826526 | Msa1010600:intron | 35.0% |
| AAAAAGAAGGGATACCATAC+CGG | - | chr7_1:13826646-13826665 | None:intergenic | 35.0% | |
| CATCATTTCAAGCTGGTAAT+TGG | - | chr7_1:13826790-13826809 | None:intergenic | 35.0% | |
| ATTACCAGCTTGAAATGATG+AGG | + | chr7_1:13826790-13826809 | Msa1010600:CDS | 35.0% | |
| AATGTGGACAATAATACCGT+TGG | + | chr7_1:13826828-13826847 | Msa1010600:CDS | 35.0% | |
| GGCTACTTATCATGATATTG+AGG | + | chr7_1:13827328-13827347 | Msa1010600:intron | 35.0% | |
| ATTTGTGCCAGTGAAAATGT+AGG | + | chr7_1:13827468-13827487 | Msa1010600:intron | 35.0% | |
| ! | TCAACTTCCTACATTTTCAC+TGG | - | chr7_1:13827478-13827497 | None:intergenic | 35.0% |
| ! | ACAACGGTGATTTTGTCATA+TGG | + | chr7_1:13827639-13827658 | Msa1010600:intron | 35.0% |
| ! | CAACGGTGATTTTGTCATAT+GGG | + | chr7_1:13827640-13827659 | Msa1010600:intron | 35.0% |
| GCATAATATATGACCCATCA+AGG | + | chr7_1:13827768-13827787 | Msa1010600:CDS | 35.0% | |
| !! | GAGAAGTATGTGTTTTCTTC+TGG | + | chr7_1:13827875-13827894 | Msa1010600:intron | 35.0% |
| TCAAAACACATTCATCATGG+TGG | + | chr7_1:13828162-13828181 | Msa1010600:intron | 35.0% | |
| TGTCAACTAGACTGTAATCT+TGG | + | chr7_1:13828259-13828278 | Msa1010600:intron | 35.0% | |
| TCAAAACACATTCATCATGG+TGG | + | chr7_1:13828162-13828181 | Msa1010600:intron | 35.0% | |
| GGATTGCAGTATAAGAATCT+TGG | + | chr7_1:13828410-13828429 | Msa1010600:intron | 35.0% | |
| !! | CAGTCATAAAAGCACTGATA+AGG | - | chr7_1:13828590-13828609 | None:intergenic | 35.0% |
| ATTTCTCTCCATTAGTGAAC+TGG | - | chr7_1:13828751-13828770 | None:intergenic | 35.0% | |
| CTTGTCCATTGAACAACAAA+AGG | + | chr7_1:13828800-13828819 | Msa1010600:CDS | 35.0% | |
| GATTTAGCATTCTGATACAC+GGG | - | chr7_1:13829188-13829207 | None:intergenic | 35.0% | |
| ! | TTTGCTATGGTTGATTTCAG+TGG | + | chr7_1:13829274-13829293 | Msa1010600:intron | 35.0% |
| ! | TTGCTATGGTTGATTTCAGT+GGG | + | chr7_1:13829275-13829294 | Msa1010600:intron | 35.0% |
| TTGTGACGATACTTCTATGA+TGG | + | chr7_1:13829387-13829406 | Msa1010600:intron | 35.0% | |
| TTGTAGGAGCTCTATTATCT+AGG | + | chr7_1:13829530-13829549 | Msa1010600:intron | 35.0% | |
| GTAGACGAAGTTACTATGTT+AGG | + | chr7_1:13829560-13829579 | Msa1010600:intron | 35.0% | |
| CGAAAATTTACCTGGTGAAA+AGG | + | chr7_1:13829628-13829647 | Msa1010600:intron | 35.0% | |
| !! | TACATAGCTTAAGGGCATTT+GGG | - | chr7_1:13829883-13829902 | None:intergenic | 35.0% |
| !! | TTACATAGCTTAAGGGCATT+TGG | - | chr7_1:13829884-13829903 | None:intergenic | 35.0% |
| ! | ATGTATCTTAGGATTTTGGG+TGG | + | chr7_1:13829923-13829942 | Msa1010600:intron | 35.0% |
| ATGATTTGACAATCGTCAGA+GGG | - | chr7_1:13829992-13830011 | None:intergenic | 35.0% | |
| !!! | AGTTTTTAGCTGAAAACTCC+TGG | - | chr7_1:13830017-13830036 | None:intergenic | 35.0% |
| ! | CTTGATGGACAAAATCTAAG+TGG | - | chr7_1:13830074-13830093 | None:intergenic | 35.0% |
| TTCAAACAATGGCAACTTGA+TGG | - | chr7_1:13830089-13830108 | None:intergenic | 35.0% | |
| CCAGTTGAAACTTCAAACAA+TGG | - | chr7_1:13830100-13830119 | None:intergenic | 35.0% | |
| ! | CCATTGTTTGAAGTTTCAAC+TGG | + | chr7_1:13830097-13830116 | Msa1010600:intron | 35.0% |
| ! | GATCTTCACAATATTGACTG+TGG | + | chr7_1:13830164-13830183 | Msa1010600:intron | 35.0% |
| !! | TTTGATGGTGACCAAGTTAA+AGG | + | chr7_1:13830536-13830555 | Msa1010600:intron | 35.0% |
| TACTCTTAAATCACTCGAAC+CGG | + | chr7_1:13830560-13830579 | Msa1010600:intron | 35.0% | |
| !!! | TTATTTTAGTGGTTCAGTCG+TGG | - | chr7_1:13830593-13830612 | None:intergenic | 35.0% |
| ACCAAAACCATAGTAAAGTC+TGG | + | chr7_1:13830612-13830631 | Msa1010600:intron | 35.0% | |
| ! | ACCAGACTTTACTATGGTTT+TGG | - | chr7_1:13830616-13830635 | None:intergenic | 35.0% |
| ! | AACCATGATTAAGCACTGTT+TGG | - | chr7_1:13830736-13830755 | None:intergenic | 35.0% |
| ! | TTTTTCTCTTGATGTTCTGC+AGG | + | chr7_1:13830759-13830778 | Msa1010600:intron | 35.0% |
| ! | TTTTCTCTTGATGTTCTGCA+GGG | + | chr7_1:13830760-13830779 | Msa1010600:intron | 35.0% |
| GATCTACAATCTTCAGTAGT+TGG | + | chr7_1:13831075-13831094 | Msa1010600:three_prime_UTR | 35.0% | |
| !!! | GTTTTTGGTGAGTGGTGTAT+TGG | - | chr7_1:13825539-13825558 | None:intergenic | 40.0% |
| CAAAAACTCCTCTCTTTCTC+CGG | + | chr7_1:13825552-13825571 | Msa1010600:five_prime_UTR | 40.0% | |
| ATCGCTGTGAAAATCGATAG+GGG | - | chr7_1:13825623-13825642 | None:intergenic | 40.0% | |
| ATTGGAATCGGAATCGGAAT+CGG | - | chr7_1:13825656-13825675 | None:intergenic | 40.0% | |
| TCCTCTTAGAGTTGTTCAGA+TGG | + | chr7_1:13825828-13825847 | Msa1010600:exon | 40.0% | |
| TCCATCTGAACAACTCTAAG+AGG | - | chr7_1:13825832-13825851 | None:intergenic | 40.0% | |
| CTTAGAGTTGTTCAGATGGA+AGG | + | chr7_1:13825832-13825851 | Msa1010600:exon | 40.0% | |
| AGTTGTTCAGATGGAAGGAT+TGG | + | chr7_1:13825837-13825856 | Msa1010600:exon | 40.0% | |
| ! | GTCATGGACTAACATAAACC+AGG | - | chr7_1:13826149-13826168 | None:intergenic | 40.0% |
| TGTTAGTCCATGACCATGTT+TGG | + | chr7_1:13826155-13826174 | Msa1010600:intron | 40.0% | |
| TACATGAAATGGGTCCAGTT+TGG | - | chr7_1:13826383-13826402 | None:intergenic | 40.0% | |
| GAAGAATTCCTAGCAACATG+AGG | - | chr7_1:13826439-13826458 | None:intergenic | 40.0% | |
| !!! | GTCCTGATGGTGTTATCTTT+TGG | + | chr7_1:13826499-13826518 | Msa1010600:intron | 40.0% |
| AGTTGTCCAGTGACTAAAGA+AGG | - | chr7_1:13826571-13826590 | None:intergenic | 40.0% | |
| TTAGTCACTGGACAACTTCT+TGG | + | chr7_1:13826574-13826593 | Msa1010600:CDS | 40.0% | |
| ! | CAACTTCTTGGATTGGATGT+TGG | + | chr7_1:13826586-13826605 | Msa1010600:CDS | 40.0% |
| ! | TACTAACTGCTTCCCTTTTC+CGG | + | chr7_1:13826624-13826643 | Msa1010600:CDS | 40.0% |
| AAATTTGCAGATGAGGGAAG+AGG | + | chr7_1:13826740-13826759 | Msa1010600:intron | 40.0% | |
| GATGAGGAAATTGAAGCTGA+TGG | + | chr7_1:13826762-13826781 | Msa1010600:CDS | 40.0% | |
| TGGACAATAATACCGTTGGA+TGG | + | chr7_1:13826832-13826851 | Msa1010600:CDS | 40.0% | |
| AGTTTGATATGAGCCAAGCA+GGG | - | chr7_1:13826976-13826995 | None:intergenic | 40.0% | |
| ! | CACTTAAAGCCAGAGTTTTG+TGG | + | chr7_1:13827067-13827086 | Msa1010600:intron | 40.0% |
| TCAGATGAGCCATTACTGAA+AGG | + | chr7_1:13827201-13827220 | Msa1010600:intron | 40.0% | |
| !! | CACGTATTTGTTTGGCCTTT+TGG | - | chr7_1:13827276-13827295 | None:intergenic | 40.0% |
| CAAAAGGCCAAACAAATACG+TGG | + | chr7_1:13827274-13827293 | Msa1010600:intron | 40.0% | |
| GTCCATACCACGTATTTGTT+TGG | - | chr7_1:13827284-13827303 | None:intergenic | 40.0% | |
| CAGATGTTAGCATTGTTCGT+TGG | + | chr7_1:13827378-13827397 | Msa1010600:intron | 40.0% | |
| AAAAGAGAGCGAGAAAACCT+AGG | - | chr7_1:13827580-13827599 | None:intergenic | 40.0% | |
| GAAGCTTTCAGACTCATTCA+TGG | + | chr7_1:13827823-13827842 | Msa1010600:CDS | 40.0% | |
| TGAGGGAGAAGAACTTATCA+TGG | + | chr7_1:13827967-13827986 | Msa1010600:CDS | 40.0% | |
| GAGGGAGAAGAACTTATCAT+GGG | + | chr7_1:13827968-13827987 | Msa1010600:CDS | 40.0% | |
| CTGTATTCATTGTGACCACT+CGG | + | chr7_1:13829139-13829158 | Msa1010600:intron | 40.0% | |
| CATTCGTTCTCTTGGTAGAT+AGG | + | chr7_1:13829220-13829239 | Msa1010600:intron | 40.0% | |
| !! | TATGATGGATTCATCCGTTG+TGG | + | chr7_1:13829249-13829268 | Msa1010600:intron | 40.0% |
| AACCATAGCAAACACCACAA+CGG | - | chr7_1:13829266-13829285 | None:intergenic | 40.0% | |
| AATGAAGTATGCAGAGCTTG+TGG | - | chr7_1:13829314-13829333 | None:intergenic | 40.0% | |
| ! | GACGATACTTCTATGATGGA+AGG | + | chr7_1:13829391-13829410 | Msa1010600:intron | 40.0% |
| AATTGTGTCTTCGTGTCATG+TGG | + | chr7_1:13829772-13829791 | Msa1010600:intron | 40.0% | |
| CAAATTTCGGCACAATGAGA+TGG | - | chr7_1:13829812-13829831 | None:intergenic | 40.0% | |
| TCTCATTGTGCCGAAATTTG+CGG | + | chr7_1:13829812-13829831 | Msa1010600:intron | 40.0% | |
| !! | ACATAGCTTAAGGGCATTTG+GGG | - | chr7_1:13829882-13829901 | None:intergenic | 40.0% |
| CATGATTTGACAATCGTCAG+AGG | - | chr7_1:13829993-13830012 | None:intergenic | 40.0% | |
| CTCTGACGATTGTCAAATCA+TGG | + | chr7_1:13829991-13830010 | Msa1010600:intron | 40.0% | |
| AAGTGGAAAAACAGAGCACA+TGG | - | chr7_1:13830057-13830076 | None:intergenic | 40.0% | |
| GACTGAACTAATTGAGGACA+AGG | - | chr7_1:13830320-13830339 | None:intergenic | 40.0% | |
| TTATTACAGGGCCGATAACA+TGG | + | chr7_1:13830360-13830379 | Msa1010600:intron | 40.0% | |
| CCTTGAACCAGACTTTACTA+TGG | - | chr7_1:13830622-13830641 | None:intergenic | 40.0% | |
| ! | CCATAGTAAAGTCTGGTTCA+AGG | + | chr7_1:13830619-13830638 | Msa1010600:intron | 40.0% |
| !! | TCTGGTGTTACCCTTATTAG+TGG | + | chr7_1:13830692-13830711 | Msa1010600:intron | 40.0% |
| AGCCAAACAGTGCTTAATCA+TGG | + | chr7_1:13830731-13830750 | Msa1010600:intron | 40.0% | |
| !!! | AGAGAGGAGTTTTTGGTGAG+TGG | - | chr7_1:13825547-13825566 | None:intergenic | 45.0% |
| ! | CGGAGAAAGAGAGGAGTTTT+TGG | - | chr7_1:13825554-13825573 | None:intergenic | 45.0% |
| CGATAGGGGATGAGGAAAAA+GGG | - | chr7_1:13825609-13825628 | None:intergenic | 45.0% | |
| TCGATAGGGGATGAGGAAAA+AGG | - | chr7_1:13825610-13825629 | None:intergenic | 45.0% | |
| GTGAAAATCGATAGGGGATG+AGG | - | chr7_1:13825617-13825636 | None:intergenic | 45.0% | |
| TCCGATTCCGATTCCAATCA+TGG | + | chr7_1:13825658-13825677 | Msa1010600:intron | 45.0% | |
| GCCATGATTGGAATCGGAAT+CGG | - | chr7_1:13825662-13825681 | None:intergenic | 45.0% | |
| GTGTGTATGTACCTCTTTCC+TGG | + | chr7_1:13826128-13826147 | Msa1010600:intron | 45.0% | |
| TCAAACCATTCTGGTCCTGA+TGG | + | chr7_1:13826486-13826505 | Msa1010600:intron | 45.0% | |
| TAACACCATCAGGACCAGAA+TGG | - | chr7_1:13826494-13826513 | None:intergenic | 45.0% | |
| CACTCACCTTCTTTAGTCAC+TGG | + | chr7_1:13826562-13826581 | Msa1010600:CDS | 45.0% | |
| CACTGGACAACTTCTTGGAT+TGG | + | chr7_1:13826579-13826598 | Msa1010600:CDS | 45.0% | |
| AGGGATACCATACCGGAAAA+GGG | - | chr7_1:13826639-13826658 | None:intergenic | 45.0% | |
| AAGGGATACCATACCGGAAA+AGG | - | chr7_1:13826640-13826659 | None:intergenic | 45.0% | |
| AGCACCTCATCATTTCAAGC+TGG | - | chr7_1:13826797-13826816 | None:intergenic | 45.0% | |
| ! | AATGATGAGGTGCTTGAGAG+AGG | + | chr7_1:13826803-13826822 | Msa1010600:CDS | 45.0% |
| CAGTTTGATATGAGCCAAGC+AGG | - | chr7_1:13826977-13826996 | None:intergenic | 45.0% | |
| GCTTGGCTCATATCAAACTG+TGG | + | chr7_1:13826977-13826996 | Msa1010600:CDS | 45.0% | |
| GGCCAAACAAATACGTGGTA+TGG | + | chr7_1:13827279-13827298 | Msa1010600:intron | 45.0% | |
| !! | GTGCTTTTTGCATTGTTCCG+AGG | + | chr7_1:13827440-13827459 | Msa1010600:intron | 45.0% |
| ACTGGCACAAATTTCTGCCT+CGG | - | chr7_1:13827460-13827479 | None:intergenic | 45.0% | |
| GGAGAAGAACTTATCATGGG+TGG | + | chr7_1:13827971-13827990 | Msa1010600:CDS | 45.0% | |
| ! | CAGTGCTTTTATGACTGAGC+TGG | + | chr7_1:13828593-13828612 | Msa1010600:CDS | 45.0% |
| TTGTAGTTTACCTGGGTGAC+TGG | - | chr7_1:13828630-13828649 | None:intergenic | 45.0% | |
| AAGCATGGCTTCAGAAGAGA+AGG | + | chr7_1:13828950-13828969 | Msa1010600:CDS | 45.0% | |
| TGGCTTCAGAAGAGAAGGTA+TGG | + | chr7_1:13828955-13828974 | Msa1010600:intron | 45.0% | |
| ATTCATTGTGACCACTCGGT+AGG | + | chr7_1:13829143-13829162 | Msa1010600:intron | 45.0% | |
| ! | GGGTTTTGCATTCGTTCTCT+TGG | + | chr7_1:13829212-13829231 | Msa1010600:intron | 45.0% |
| ! | ATCCGTTGTGGTGTTTGCTA+TGG | + | chr7_1:13829261-13829280 | Msa1010600:intron | 45.0% |
| ! | ATCTCAGCATCCTTTTCACC+AGG | - | chr7_1:13829641-13829660 | None:intergenic | 45.0% |
| GGTGAAAAGGATGCTGAGAT+TGG | + | chr7_1:13829641-13829660 | Msa1010600:intron | 45.0% | |
| ! | TTGGAGAGTGTGTGTTCCTA+TGG | + | chr7_1:13829660-13829679 | Msa1010600:intron | 45.0% |
| AGTGTGTGTTCCTATGGTCA+GGG | + | chr7_1:13829666-13829685 | Msa1010600:intron | 45.0% | |
| TGCTATTAAGCCCTGACCAT+AGG | - | chr7_1:13829679-13829698 | None:intergenic | 45.0% | |
| CTGTAAAACATACCCACAGG+TGG | - | chr7_1:13829702-13829721 | None:intergenic | 45.0% | |
| ! | CACCTGTGGGTATGTTTTAC+AGG | + | chr7_1:13829700-13829719 | Msa1010600:intron | 45.0% |
| GACCTGTAAAACATACCCAC+AGG | - | chr7_1:13829705-13829724 | None:intergenic | 45.0% | |
| !! | TCGTTTGCTATTCACCACTC+TGG | - | chr7_1:13829743-13829762 | None:intergenic | 45.0% |
| GTGCGACAAACCGCAAATTT+CGG | - | chr7_1:13829825-13829844 | None:intergenic | 45.0% | |
| !! | ACACTTTTGGGTCGCAATTG+TGG | + | chr7_1:13829843-13829862 | Msa1010600:intron | 45.0% |
| ATGCGGGTGTGATGTATCTT+AGG | + | chr7_1:13829912-13829931 | Msa1010600:intron | 45.0% | |
| ACGATTGTCAAATCATGGCC+AGG | + | chr7_1:13829996-13830015 | Msa1010600:intron | 45.0% | |
| ACTCTCAAGTCGTGATGGTT+CGG | - | chr7_1:13830455-13830474 | None:intergenic | 45.0% | |
| AGGAAACTCTCAAGTCGTGA+TGG | - | chr7_1:13830460-13830479 | None:intergenic | 45.0% | |
| CTTAAATCACTCGAACCGGA+AGG | + | chr7_1:13830564-13830583 | Msa1010600:intron | 45.0% | |
| TTTGCTGAAGGCTTTGCATG+AGG | + | chr7_1:13830811-13830830 | Msa1010600:exon | 45.0% | |
| GGAAGAAGAAACCCTAACGC+CGG | - | chr7_1:13825574-13825593 | None:intergenic | 50.0% | |
| GAAAAAGGGTCGGAAGTTGC+AGG | - | chr7_1:13825595-13825614 | None:intergenic | 50.0% | |
| AGGGGATGAGGAAAAAGGGT+CGG | - | chr7_1:13825605-13825624 | None:intergenic | 50.0% | |
| ATCGGAATCGGAATCGGAAG+CGG | - | chr7_1:13825650-13825669 | None:intergenic | 50.0% | |
| ! | CGTTTTTCGCAGCTGCAACT+AGG | + | chr7_1:13825767-13825786 | Msa1010600:intron | 50.0% |
| TCAAGCTGTTGCAACGGAAG+AGG | + | chr7_1:13825798-13825817 | Msa1010600:five_prime_UTR | 50.0% | |
| AAGCATGGCCTCATGTTGCT+AGG | + | chr7_1:13826428-13826447 | Msa1010600:intron | 50.0% | |
| ! | ACTGCTTCCCTTTTCCGGTA+TGG | + | chr7_1:13826629-13826648 | Msa1010600:intron | 50.0% |
| GTGCTTGAGAGAGGTCAATG+TGG | + | chr7_1:13826812-13826831 | Msa1010600:CDS | 50.0% | |
| ACCCATCAAGGGCTGATCAA+GGG | + | chr7_1:13827780-13827799 | Msa1010600:CDS | 50.0% | |
| ATCATGGGTGGACATCTTCG+AGG | + | chr7_1:13827983-13828002 | Msa1010600:CDS | 50.0% | |
| ! | CAAAGTTCCAGAGCGCTTAC+GGG | - | chr7_1:13828014-13828033 | None:intergenic | 50.0% |
| ! | GCAAAGTTCCAGAGCGCTTA+CGG | - | chr7_1:13828015-13828034 | None:intergenic | 50.0% |
| AAATTCCCTAGCCTACCGAG+TGG | - | chr7_1:13829157-13829176 | None:intergenic | 50.0% | |
| GAGTGTGTGTTCCTATGGTC+AGG | + | chr7_1:13829665-13829684 | Msa1010600:intron | 50.0% | |
| GGCTTAATAGCACCACCTGT+GGG | + | chr7_1:13829687-13829706 | Msa1010600:intron | 50.0% | |
| GTAGCATGTTCTGTCCAGAG+TGG | + | chr7_1:13829726-13829745 | Msa1010600:intron | 50.0% | |
| GTGTCATGTGGCTGGTATCT+AGG | + | chr7_1:13829784-13829803 | Msa1010600:intron | 50.0% | |
| ! | TGCGGTTTGTCGCACACTTT+TGG | + | chr7_1:13829830-13829849 | Msa1010600:intron | 50.0% |
| ! | GCGGTTTGTCGCACACTTTT+GGG | + | chr7_1:13829831-13829850 | Msa1010600:intron | 50.0% |
| GACAATCGTCAGAGGGCAAT+GGG | - | chr7_1:13829985-13830004 | None:intergenic | 50.0% | |
| TGACAATCGTCAGAGGGCAA+TGG | - | chr7_1:13829986-13830005 | None:intergenic | 50.0% | |
| GGAAAAACAGAGCACATGGC+AGG | - | chr7_1:13830053-13830072 | None:intergenic | 50.0% | |
| AGCTCTGCGTGCCATGTTAT+CGG | - | chr7_1:13830374-13830393 | None:intergenic | 50.0% | |
| GGCTTGAAAATGGGGTTTGC+AGG | - | chr7_1:13830427-13830446 | None:intergenic | 50.0% | |
| !! | AAACCCCATTTTCAAGCCGC+TGG | + | chr7_1:13830429-13830448 | Msa1010600:CDS | 50.0% |
| GTTCAGTCGTGGATTCCTTC+CGG | - | chr7_1:13830582-13830601 | None:intergenic | 50.0% | |
| TTGATGTTCTGCAGGGTTGC+TGG | + | chr7_1:13830767-13830786 | Msa1010600:intron | 50.0% | |
| TGATGTTCTGCAGGGTTGCT+GGG | + | chr7_1:13830768-13830787 | Msa1010600:intron | 50.0% | |
| TCCTCTCTTTCTCCGGCGTT+AGG | + | chr7_1:13825559-13825578 | Msa1010600:five_prime_UTR | 55.0% | |
| CCTCTCTTTCTCCGGCGTTA+GGG | + | chr7_1:13825560-13825579 | Msa1010600:five_prime_UTR | 55.0% | |
| GCAGATGAGGGAAGAGGATG+AGG | + | chr7_1:13826746-13826765 | Msa1010600:intron | 55.0% | |
| AGGTACCAGTCTACCCTGCT+TGG | + | chr7_1:13826960-13826979 | Msa1010600:intron | 55.0% | |
| ATGAGCCAAGCAGGGTAGAC+TGG | - | chr7_1:13826968-13826987 | None:intergenic | 55.0% | |
| ! | TTATGCTGCTTCCGCTGCCT+AGG | + | chr7_1:13827560-13827579 | Msa1010600:intron | 55.0% |
| GAGCGAGAAAACCTAGGCAG+CGG | - | chr7_1:13827574-13827593 | None:intergenic | 55.0% | |
| GACCCATCAAGGGCTGATCA+AGG | + | chr7_1:13827779-13827798 | Msa1010600:CDS | 55.0% | |
| CCCCTTGATCAGCCCTTGAT+GGG | - | chr7_1:13827784-13827803 | None:intergenic | 55.0% | |
| CCCATCAAGGGCTGATCAAG+GGG | + | chr7_1:13827781-13827800 | Msa1010600:CDS | 55.0% | |
| ACCCCTTGATCAGCCCTTGA+TGG | - | chr7_1:13827785-13827804 | None:intergenic | 55.0% | |
| !! | TCAAGGGGTCCTAGCTCTGA+AGG | + | chr7_1:13827796-13827815 | Msa1010600:CDS | 55.0% |
| GCTTCAACGCCTTCAGAGCT+AGG | - | chr7_1:13827808-13827827 | None:intergenic | 55.0% | |
| GGAAATTCCCGTAAGCGCTC+TGG | + | chr7_1:13828004-13828023 | Msa1010600:intron | 55.0% | |
| ACCTGATACTCCAGTCACCC+AGG | + | chr7_1:13828617-13828636 | Msa1010600:CDS | 55.0% | |
| ! | ACCTGGGTGACTGGAGTATC+AGG | - | chr7_1:13828621-13828640 | None:intergenic | 55.0% |
| GACGAGACAAGCTCCGGTAA+TGG | - | chr7_1:13828915-13828934 | None:intergenic | 55.0% | |
| TTGTGACCACTCGGTAGGCT+AGG | + | chr7_1:13829148-13829167 | Msa1010600:intron | 55.0% | |
| TGTGACCACTCGGTAGGCTA+GGG | + | chr7_1:13829149-13829168 | Msa1010600:intron | 55.0% | |
| GGGCTTAATAGCACCACCTG+TGG | + | chr7_1:13829686-13829705 | Msa1010600:intron | 55.0% | |
| GTGTCTTCGTGTCATGTGGC+TGG | + | chr7_1:13829776-13829795 | Msa1010600:intron | 55.0% | |
| ATCGTCAGAGGGCAATGGGT+CGG | - | chr7_1:13829981-13830000 | None:intergenic | 55.0% | |
| GAGCACATGGCAGGAGTTGA+TGG | - | chr7_1:13830044-13830063 | None:intergenic | 55.0% | |
| GCAGGATCTTCCTCGGGTAA+AGG | - | chr7_1:13830409-13830428 | None:intergenic | 55.0% | |
| GGGTTTGCAGGATCTTCCTC+GGG | - | chr7_1:13830415-13830434 | None:intergenic | 55.0% | |
| GGGGTTTGCAGGATCTTCCT+CGG | - | chr7_1:13830416-13830435 | None:intergenic | 55.0% | |
| TCGGCCAGCGGCTTGAAAAT+GGG | - | chr7_1:13830436-13830455 | None:intergenic | 55.0% | |
| TTCGGCCAGCGGCTTGAAAA+TGG | - | chr7_1:13830437-13830456 | None:intergenic | 55.0% | |
| GCTGAAGGCTTTGCATGAGG+AGG | + | chr7_1:13830814-13830833 | Msa1010600:exon | 55.0% | |
| CCCTAACGCCGGAGAAAGAG+AGG | - | chr7_1:13825563-13825582 | None:intergenic | 60.0% | |
| CCTGCTGACGAGACAAGCTC+CGG | - | chr7_1:13828921-13828940 | None:intergenic | 60.0% | |
| AGCAGGCTCAGCAGCAAGCA+TGG | + | chr7_1:13828935-13828954 | Msa1010600:CDS | 60.0% | |
| CAGAGGGCAATGGGTCGGAT+GGG | - | chr7_1:13829976-13829995 | None:intergenic | 60.0% | |
| TCAGAGGGCAATGGGTCGGA+TGG | - | chr7_1:13829977-13829996 | None:intergenic | 60.0% | |
| AACATGGCACGCAGAGCTGC+TGG | + | chr7_1:13830376-13830395 | Msa1010600:CDS | 60.0% | |
| ACATGGCACGCAGAGCTGCT+GGG | + | chr7_1:13830377-13830396 | Msa1010600:CDS | 60.0% | |
| TGGGGAAGAGCCTTTACCCG+AGG | + | chr7_1:13830396-13830415 | Msa1010600:CDS | 60.0% | |
| CGGCCAGCGGCTTGAAAATG+GGG | - | chr7_1:13830435-13830454 | None:intergenic | 60.0% | |
| ! | AGTCGTGATGGTTCGGCCAG+CGG | - | chr7_1:13830448-13830467 | None:intergenic | 60.0% |
| CCGGAGCTTGTCTCGTCAGC+AGG | + | chr7_1:13828918-13828937 | Msa1010600:CDS | 65.0% | |
| CATGGCACGCAGAGCTGCTG+GGG | + | chr7_1:13830378-13830397 | Msa1010600:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 13825509 | 13831122 | 13825509 | ID=Msa1010600;Name=Msa1010600 |
| chr7_1 | mRNA | 13825509 | 13831122 | 13825509 | ID=Msa1010600-mRNA-1;Parent=Msa1010600;Name=Msa1010600-mRNA-1;_AED=0.10;_eAED=0.10;_QI=234|0.90|0.91|1|0.90|0.91|12|304|288 |
| chr7_1 | exon | 13825509 | 13825674 | 13825509 | ID=Msa1010600-mRNA-1:exon:3528;Parent=Msa1010600-mRNA-1 |
| chr7_1 | exon | 13825779 | 13825858 | 13825779 | ID=Msa1010600-mRNA-1:exon:3529;Parent=Msa1010600-mRNA-1 |
| chr7_1 | exon | 13826529 | 13826645 | 13826529 | ID=Msa1010600-mRNA-1:exon:3530;Parent=Msa1010600-mRNA-1 |
| chr7_1 | exon | 13826750 | 13826853 | 13826750 | ID=Msa1010600-mRNA-1:exon:3531;Parent=Msa1010600-mRNA-1 |
| chr7_1 | exon | 13826962 | 13827028 | 13826962 | ID=Msa1010600-mRNA-1:exon:3532;Parent=Msa1010600-mRNA-1 |
| chr7_1 | exon | 13827746 | 13827879 | 13827746 | ID=Msa1010600-mRNA-1:exon:3533;Parent=Msa1010600-mRNA-1 |
| chr7_1 | exon | 13827965 | 13828013 | 13827965 | ID=Msa1010600-mRNA-1:exon:3534;Parent=Msa1010600-mRNA-1 |
| chr7_1 | exon | 13828567 | 13828638 | 13828567 | ID=Msa1010600-mRNA-1:exon:3535;Parent=Msa1010600-mRNA-1 |
| chr7_1 | exon | 13828720 | 13828821 | 13828720 | ID=Msa1010600-mRNA-1:exon:3536;Parent=Msa1010600-mRNA-1 |
| chr7_1 | exon | 13828904 | 13828971 | 13828904 | ID=Msa1010600-mRNA-1:exon:3537;Parent=Msa1010600-mRNA-1 |
| chr7_1 | exon | 13830369 | 13830472 | 13830369 | ID=Msa1010600-mRNA-1:exon:3538;Parent=Msa1010600-mRNA-1 |
| chr7_1 | exon | 13830781 | 13831122 | 13830781 | ID=Msa1010600-mRNA-1:exon:3539;Parent=Msa1010600-mRNA-1 |
| chr7_1 | five_prime_UTR | 13825509 | 13825674 | 13825509 | ID=Msa1010600-mRNA-1:five_prime_utr;Parent=Msa1010600-mRNA-1 |
| chr7_1 | five_prime_UTR | 13825779 | 13825846 | 13825779 | ID=Msa1010600-mRNA-1:five_prime_utr;Parent=Msa1010600-mRNA-1 |
| chr7_1 | CDS | 13825847 | 13825858 | 13825847 | ID=Msa1010600-mRNA-1:cds;Parent=Msa1010600-mRNA-1 |
| chr7_1 | CDS | 13826529 | 13826645 | 13826529 | ID=Msa1010600-mRNA-1:cds;Parent=Msa1010600-mRNA-1 |
| chr7_1 | CDS | 13826750 | 13826853 | 13826750 | ID=Msa1010600-mRNA-1:cds;Parent=Msa1010600-mRNA-1 |
| chr7_1 | CDS | 13826962 | 13827028 | 13826962 | ID=Msa1010600-mRNA-1:cds;Parent=Msa1010600-mRNA-1 |
| chr7_1 | CDS | 13827746 | 13827879 | 13827746 | ID=Msa1010600-mRNA-1:cds;Parent=Msa1010600-mRNA-1 |
| chr7_1 | CDS | 13827965 | 13828013 | 13827965 | ID=Msa1010600-mRNA-1:cds;Parent=Msa1010600-mRNA-1 |
| chr7_1 | CDS | 13828567 | 13828638 | 13828567 | ID=Msa1010600-mRNA-1:cds;Parent=Msa1010600-mRNA-1 |
| chr7_1 | CDS | 13828720 | 13828821 | 13828720 | ID=Msa1010600-mRNA-1:cds;Parent=Msa1010600-mRNA-1 |
| chr7_1 | CDS | 13828904 | 13828971 | 13828904 | ID=Msa1010600-mRNA-1:cds;Parent=Msa1010600-mRNA-1 |
| chr7_1 | CDS | 13830369 | 13830472 | 13830369 | ID=Msa1010600-mRNA-1:cds;Parent=Msa1010600-mRNA-1 |
| chr7_1 | CDS | 13830781 | 13830818 | 13830781 | ID=Msa1010600-mRNA-1:cds;Parent=Msa1010600-mRNA-1 |
| chr7_1 | three_prime_UTR | 13830819 | 13831122 | 13830819 | ID=Msa1010600-mRNA-1:three_prime_utr;Parent=Msa1010600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
