Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1052160 | XP_003621704.1 | 99.020 | 306 | 3 | 0 | 1 | 306 | 1 | 306 | 0.0 | 629 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1052160 | sp|Q9C5Z2|EIF3H_ARATH | 82.838 | 303 | 51 | 1 | 5 | 306 | 3 | 305 | 0.0 | 520 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1052160 | A2Q5B8 | 99.020 | 306 | 3 | 0 | 1 | 306 | 1 | 306 | 0.0 | 629 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0094210 | Msa1052160 | 0.813064 | 3.092555e-51 | -8.615850e-47 |
| Msa1010600 | Msa1052160 | 0.907120 | 7.139890e-81 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1052160 | MtrunA17_Chr7g0222191 | 99.020 | 306 | 3 | 0 | 1 | 306 | 1 | 306 | 0.0 | 629 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1052160 | AT1G10840.1 | 82.838 | 303 | 51 | 1 | 5 | 306 | 3 | 305 | 0.0 | 520 |
| Msa1052160 | AT1G10840.2 | 83.945 | 218 | 35 | 0 | 89 | 306 | 1 | 218 | 1.36e-133 | 380 |
Find 102 sgRNAs with CRISPR-Local
Find 354 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCGGCCAGCGGCTTGAAAA+TGG | 0.195500 | 7_2:-20348198 | None:intergenic |
| CATCATTTCAAGCTGGTAAT+TGG | 0.226228 | 7_2:-20344550 | None:intergenic |
| TTGATGTTCTGCAGGGTTGC+TGG | 0.236004 | 7_2:+20348531 | Msa1052160:intron |
| TTAGTCACTGGACAACTTCT+TGG | 0.276228 | 7_2:+20344337 | Msa1052160:CDS |
| TCGATAGGGGATGAGGAAAA+AGG | 0.295172 | 7_2:-20343370 | None:intergenic |
| AGCTCTGCGTGCCATGTTAT+CGG | 0.309858 | 7_2:-20348135 | None:intergenic |
| TTCAGTTTCAATTCCATTAC+CGG | 0.316223 | 7_2:+20346663 | Msa1052160:intron |
| GATCTACAATCTTCAGTAGT+TGG | 0.317039 | 7_2:+20348841 | Msa1052160:three_prime_UTR |
| TCGGCCAGCGGCTTGAAAAT+GGG | 0.322632 | 7_2:-20348197 | None:intergenic |
| GGCTTGAAAATGGGGTTTGC+AGG | 0.323151 | 7_2:-20348188 | None:intergenic |
| TTCACTAATGGAGAGAAATA+TGG | 0.325096 | 7_2:+20346516 | Msa1052160:CDS |
| TCCTCTCTTTCTCCGGCGTT+AGG | 0.330499 | 7_2:+20343322 | Msa1052160:five_prime_UTR |
| TACAATGCTTAATTATCTTC+AGG | 0.338733 | 7_2:-20344297 | None:intergenic |
| TATTACCTGGTAATTCATAA+AGG | 0.352372 | 7_2:-20344775 | None:intergenic |
| AACATGGCACGCAGAGCTGC+TGG | 0.364111 | 7_2:+20348140 | Msa1052160:CDS |
| ATCTACAATCTTCAGTAGTT+GGG | 0.370067 | 7_2:+20348842 | Msa1052160:three_prime_UTR |
| GAAGCTTTCAGACTCATTCA+TGG | 0.372018 | 7_2:+20345587 | Msa1052160:CDS |
| CTTGTCCATTGAACAACAAA+AGG | 0.384746 | 7_2:+20346564 | Msa1052160:CDS |
| TCCGATTCCGATTCCAATCA+TGG | 0.391265 | 7_2:+20343421 | Msa1052160:exon |
| ACCCCTTGATCAGCCCTTGA+TGG | 0.392820 | 7_2:-20345546 | None:intergenic |
| ATTATCAACCAGTTCACTAA+TGG | 0.395048 | 7_2:+20346504 | Msa1052160:CDS |
| ATTTCTCTCCATTAGTGAAC+TGG | 0.398334 | 7_2:-20346512 | None:intergenic |
| CATAATATTCTCATCCATAT+AGG | 0.399466 | 7_2:-20348666 | None:intergenic |
| AAGGGATACCATACCGGAAA+AGG | 0.400259 | 7_2:-20344400 | None:intergenic |
| AATAGAGGATTATTGTTTCA+AGG | 0.403841 | 7_2:+20348695 | Msa1052160:three_prime_UTR |
| TTACTTATAGTAGCCATGAT+TGG | 0.409872 | 7_2:-20343434 | None:intergenic |
| CCTCTCTTTCTCCGGCGTTA+GGG | 0.417369 | 7_2:+20343323 | Msa1052160:five_prime_UTR |
| TTGTAGTTTACCTGGGTGAC+TGG | 0.419136 | 7_2:-20346391 | None:intergenic |
| GCAGATGAGGGAAGAGGATG+AGG | 0.421135 | 7_2:+20344509 | Msa1052160:intron |
| TGATGTTCTGCAGGGTTGCT+GGG | 0.429580 | 7_2:+20348532 | Msa1052160:intron |
| CAGTCATAAAAGCACTGATA+AGG | 0.449414 | 7_2:-20346351 | None:intergenic |
| AGTTGTTCAGATGGAAGGAT+TGG | 0.452989 | 7_2:+20343600 | Msa1052160:CDS |
| ATTGGAATCGGAATCGGAAT+CGG | 0.456190 | 7_2:-20343416 | None:intergenic |
| ACTCTCAAGTCGTGATGGTT+CGG | 0.456933 | 7_2:-20348216 | None:intergenic |
| CACTGGACAACTTCTTGGAT+TGG | 0.458201 | 7_2:+20344342 | Msa1052160:CDS |
| CAGTTTGATATGAGCCAAGC+AGG | 0.458895 | 7_2:-20344737 | None:intergenic |
| CCGGAGCTTGTCTCGTCAGC+AGG | 0.463217 | 7_2:+20346682 | Msa1052160:CDS |
| TCCATCTGAACAACTCTAAG+AGG | 0.468041 | 7_2:-20343592 | None:intergenic |
| AGCAGGCTCAGCAGCAAGCA+TGG | 0.469026 | 7_2:+20346699 | Msa1052160:CDS |
| ATGAGCCAAGCAGGGTAGAC+TGG | 0.471240 | 7_2:-20344728 | None:intergenic |
| GCATAATATATGACCCATCA+AGG | 0.475414 | 7_2:+20345532 | Msa1052160:CDS |
| CACTCACCTTCTTTAGTCAC+TGG | 0.478333 | 7_2:+20344325 | Msa1052160:CDS |
| GCAGGATCTTCCTCGGGTAA+AGG | 0.479465 | 7_2:-20348170 | None:intergenic |
| GAAGATAATTAAGCATTGTA+AGG | 0.480417 | 7_2:+20344300 | Msa1052160:CDS |
| GACGAGACAAGCTCCGGTAA+TGG | 0.482758 | 7_2:-20346676 | None:intergenic |
| GCTTCAACGCCTTCAGAGCT+AGG | 0.489562 | 7_2:-20345569 | None:intergenic |
| AATATTATGATGCACAATAG+AGG | 0.491658 | 7_2:+20348680 | Msa1052160:three_prime_UTR |
| CTTAGAGTTGTTCAGATGGA+AGG | 0.493585 | 7_2:+20343595 | Msa1052160:CDS |
| GCCATGATTGGAATCGGAAT+CGG | 0.494291 | 7_2:-20343422 | None:intergenic |
| GTGAAAATCGATAGGGGATG+AGG | 0.495287 | 7_2:-20343377 | None:intergenic |
| CAACTTCTTGGATTGGATGT+TGG | 0.499911 | 7_2:+20344349 | Msa1052160:CDS |
| ATAGTAGCCATGATTGGAAT+CGG | 0.501292 | 7_2:-20343428 | None:intergenic |
| GGGGTTTGCAGGATCTTCCT+CGG | 0.502079 | 7_2:-20348177 | None:intergenic |
| TGAGGGAGAAGAACTTATCA+TGG | 0.503462 | 7_2:+20345731 | Msa1052160:CDS |
| TCAAGCTGTTGCAACGGAAG+AGG | 0.504590 | 7_2:+20343561 | Msa1052160:CDS |
| AGTCATAAAAGCACTGATAA+GGG | 0.508843 | 7_2:-20346350 | None:intergenic |
| TAACAGACTTTATTTGCTGA+AGG | 0.513759 | 7_2:+20348563 | Msa1052160:CDS |
| CATATGAAATAATAGATTGA+GGG | 0.521229 | 7_2:+20345714 | Msa1052160:intron |
| AGTTGTCCAGTGACTAAAGA+AGG | 0.523423 | 7_2:-20344331 | None:intergenic |
| GACCCATCAAGGGCTGATCA+AGG | 0.524561 | 7_2:+20345543 | Msa1052160:CDS |
| ACCCATCAAGGGCTGATCAA+GGG | 0.525854 | 7_2:+20345544 | Msa1052160:CDS |
| ATCGGAATCGGAATCGGAAG+CGG | 0.526472 | 7_2:-20343410 | None:intergenic |
| ACATGGCACGCAGAGCTGCT+GGG | 0.528743 | 7_2:+20348141 | Msa1052160:CDS |
| GGGTTTGCAGGATCTTCCTC+GGG | 0.530656 | 7_2:-20348176 | None:intergenic |
| AGGGATACCATACCGGAAAA+GGG | 0.535713 | 7_2:-20344399 | None:intergenic |
| ATCATGGGTGGACATCTTCG+AGG | 0.535926 | 7_2:+20345747 | Msa1052160:CDS |
| CCCCTTGATCAGCCCTTGAT+GGG | 0.536856 | 7_2:-20345545 | None:intergenic |
| AGTCGTGATGGTTCGGCCAG+CGG | 0.542936 | 7_2:-20348209 | None:intergenic |
| TCCTCTTAGAGTTGTTCAGA+TGG | 0.548192 | 7_2:+20343591 | Msa1052160:CDS |
| AGGTACCAGTCTACCCTGCT+TGG | 0.548620 | 7_2:+20344723 | Msa1052160:intron |
| AAGCATGGCTTCAGAAGAGA+AGG | 0.549881 | 7_2:+20346714 | Msa1052160:CDS |
| CATGGCACGCAGAGCTGCTG+GGG | 0.550315 | 7_2:+20348142 | Msa1052160:CDS |
| CCCTAACGCCGGAGAAAGAG+AGG | 0.550638 | 7_2:-20343323 | None:intergenic |
| AAATTTGCAGATGAGGGAAG+AGG | 0.550961 | 7_2:+20344503 | Msa1052160:intron |
| CCTGCTGACGAGACAAGCTC+CGG | 0.563447 | 7_2:-20346682 | None:intergenic |
| GCTGAAGGCTTTGCATGAGG+AGG | 0.564403 | 7_2:+20348578 | Msa1052160:exon |
| TGAAACCTTTATGAATTACC+AGG | 0.564604 | 7_2:+20344770 | Msa1052160:CDS |
| CCCATCAAGGGCTGATCAAG+GGG | 0.569340 | 7_2:+20345545 | Msa1052160:CDS |
| TTATTACAGGGCCGATAACA+TGG | 0.571182 | 7_2:+20348124 | Msa1052160:intron |
| AAATCGCTGTGAAAATCGAT+AGG | 0.578626 | 7_2:-20343385 | None:intergenic |
| AGCACCTCATCATTTCAAGC+TGG | 0.578673 | 7_2:-20344557 | None:intergenic |
| AATCGCTGTGAAAATCGATA+GGG | 0.579779 | 7_2:-20343384 | None:intergenic |
| TCAAGGGGTCCTAGCTCTGA+AGG | 0.582181 | 7_2:+20345560 | Msa1052160:CDS |
| AATGTGGACAATAATACCGT+TGG | 0.593681 | 7_2:+20344591 | Msa1052160:CDS |
| TTTGCTGAAGGCTTTGCATG+AGG | 0.596130 | 7_2:+20348575 | Msa1052160:exon |
| ATTTCTTCAAGCTGTTGCAA+CGG | 0.609939 | 7_2:+20343555 | Msa1052160:CDS |
| AGGAAACTCTCAAGTCGTGA+TGG | 0.615644 | 7_2:-20348221 | None:intergenic |
| ACCTGATACTCCAGTCACCC+AGG | 0.616375 | 7_2:+20346381 | Msa1052160:CDS |
| GGAGAAGAACTTATCATGGG+TGG | 0.622548 | 7_2:+20345735 | Msa1052160:CDS |
| CATAATATATGACCCATCAA+GGG | 0.628074 | 7_2:+20345533 | Msa1052160:CDS |
| GAGGGAGAAGAACTTATCAT+GGG | 0.629094 | 7_2:+20345732 | Msa1052160:CDS |
| ATTACCAGCTTGAAATGATG+AGG | 0.641532 | 7_2:+20344553 | Msa1052160:CDS |
| GGAAGAAGAAACCCTAACGC+CGG | 0.645805 | 7_2:-20343334 | None:intergenic |
| TGGACAATAATACCGTTGGA+TGG | 0.649223 | 7_2:+20344595 | Msa1052160:CDS |
| ATCGCTGTGAAAATCGATAG+GGG | 0.660542 | 7_2:-20343383 | None:intergenic |
| AAATCATACATACCATCCAA+CGG | 0.673715 | 7_2:-20344607 | None:intergenic |
| TGGGGAAGAGCCTTTACCCG+AGG | 0.681168 | 7_2:+20348160 | Msa1052160:CDS |
| GCTTGGCTCATATCAAACTG+TGG | 0.682062 | 7_2:+20344740 | Msa1052160:CDS |
| AGTTTGATATGAGCCAAGCA+GGG | 0.685374 | 7_2:-20344736 | None:intergenic |
| GATGAGGAAATTGAAGCTGA+TGG | 0.687478 | 7_2:+20344525 | Msa1052160:CDS |
| AATGATGAGGTGCTTGAGAG+AGG | 0.697805 | 7_2:+20344566 | Msa1052160:CDS |
| GTGCTTGAGAGAGGTCAATG+TGG | 0.716267 | 7_2:+20344575 | Msa1052160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATCAATAGAAAAATTATT+TGG | - | chr7_2:20346049-20346068 | None:intergenic | 10.0% |
| !! | ACATTTGTTTATAAAATAAA+AGG | - | chr7_2:20348035-20348054 | None:intergenic | 10.0% |
| !!! | TTTTATTTTATAAACAAATG+TGG | + | chr7_2:20348034-20348053 | Msa1052160:intron | 10.0% |
| !! | TTTGTAATTTCATATGTTTA+TGG | + | chr7_2:20343798-20343817 | Msa1052160:intron | 15.0% |
| !!! | TTGTTTTCTTAAAATGATAT+AGG | + | chr7_2:20343826-20343845 | Msa1052160:intron | 15.0% |
| !! | AAATAAACGAATAAAAAGAA+GGG | - | chr7_2:20344421-20344440 | None:intergenic | 15.0% |
| !! | AAAATAAACGAATAAAAAGA+AGG | - | chr7_2:20344422-20344441 | None:intergenic | 15.0% |
| !!! | TTTTTAACGATTTAATAATC+TGG | + | chr7_2:20345448-20345467 | Msa1052160:intron | 15.0% |
| !!! | ACTAAATTTAAAATAGACAA+AGG | - | chr7_2:20346432-20346451 | None:intergenic | 15.0% |
| !!! | TCCATTATTTTTTTATTGTA+AGG | + | chr7_2:20346790-20346809 | Msa1052160:intron | 15.0% |
| !! | ACCTTACAATAAAAAAATAA+TGG | - | chr7_2:20346794-20346813 | None:intergenic | 15.0% |
| !! | AATTAGTGAAGAGAAAAAAT+CGG | - | chr7_2:20343493-20343512 | None:intergenic | 20.0% |
| !! | TGAAAAATGTTGTCTTTATT+TGG | + | chr7_2:20343698-20343717 | Msa1052160:intron | 20.0% |
| !!! | GAAAAATGTTGTCTTTATTT+GGG | + | chr7_2:20343699-20343718 | Msa1052160:intron | 20.0% |
| !!! | AAAAATGTTGTCTTTATTTG+GGG | + | chr7_2:20343700-20343719 | Msa1052160:intron | 20.0% |
| !!! | TTTTGATAGGTTTTATTGTT+TGG | + | chr7_2:20343723-20343742 | Msa1052160:intron | 20.0% |
| !! | AATAAGCTGAAAACAATTTA+TGG | + | chr7_2:20344036-20344055 | Msa1052160:intron | 20.0% |
| !! | ACTTATTAGAGTTTATCTAT+TGG | - | chr7_2:20344119-20344138 | None:intergenic | 20.0% |
| !! | AAATACTTTACAAACATACA+AGG | - | chr7_2:20344170-20344189 | None:intergenic | 20.0% |
| !! | ATAAATCAAGAAATATTACC+TGG | - | chr7_2:20344791-20344810 | None:intergenic | 20.0% |
| !! | TGTATAGTTATATGTTATTG+TGG | + | chr7_2:20344856-20344875 | Msa1052160:intron | 20.0% |
| !! | CACATTAAATAGTAAATTAC+AGG | - | chr7_2:20344894-20344913 | None:intergenic | 20.0% |
| !! | TTAATTTAAGAATGTCCAAA+AGG | + | chr7_2:20345021-20345040 | Msa1052160:intron | 20.0% |
| !! | AAAAGATTATACCATTTGAT+TGG | + | chr7_2:20345070-20345089 | Msa1052160:intron | 20.0% |
| !!! | CAAACTATTAATGTTTTTTC+AGG | + | chr7_2:20345488-20345507 | Msa1052160:intron | 20.0% |
| !! | TCATATGAAATAATAGATTG+AGG | + | chr7_2:20345713-20345732 | Msa1052160:intron | 20.0% |
| !! | CATATGAAATAATAGATTGA+GGG | + | chr7_2:20345714-20345733 | Msa1052160:intron | 20.0% |
| !!! | TGATCACTTTATATTTTCAT+CGG | - | chr7_2:20345909-20345928 | None:intergenic | 20.0% |
| !!! | TGTTTAGATTTTCATTTAGT+TGG | + | chr7_2:20346589-20346608 | Msa1052160:intron | 20.0% |
| !!! | GTTTAGATTTTCATTTAGTT+GGG | + | chr7_2:20346590-20346609 | Msa1052160:intron | 20.0% |
| !!! | TTTAGATTTTCATTTAGTTG+GGG | + | chr7_2:20346591-20346610 | Msa1052160:intron | 20.0% |
| !! | TTTCATGTCATAAATTCAAT+TGG | + | chr7_2:20347098-20347117 | Msa1052160:intron | 20.0% |
| !! | TTCATGTCATAAATTCAATT+GGG | + | chr7_2:20347099-20347118 | Msa1052160:intron | 20.0% |
| !!! | AAGGATTGTAATTACATTTT+TGG | + | chr7_2:20347174-20347193 | Msa1052160:intron | 20.0% |
| !!! | AGGATTGTAATTACATTTTT+GGG | + | chr7_2:20347175-20347194 | Msa1052160:intron | 20.0% |
| !!! | TTTGATTTAGCAAATTTAGA+TGG | + | chr7_2:20347230-20347249 | Msa1052160:intron | 20.0% |
| !! | TTCAAAATTACATAGCTTAA+GGG | - | chr7_2:20347655-20347674 | None:intergenic | 20.0% |
| !!! | TATTGCATTTTTCTTTTGTA+TGG | + | chr7_2:20348009-20348028 | Msa1052160:intron | 20.0% |
| !! | AAGATATATACCACTAATAA+GGG | - | chr7_2:20348469-20348488 | None:intergenic | 20.0% |
| !! | AAAGATATATACCACTAATA+AGG | - | chr7_2:20348470-20348489 | None:intergenic | 20.0% |
| !!! | ATGTAATATCTTTTCCTATA+TGG | + | chr7_2:20348652-20348671 | Msa1052160:three_prime_UTR | 20.0% |
| !! | GAAGAAAAACAAAAATTACT+TGG | - | chr7_2:20348721-20348740 | None:intergenic | 20.0% |
| !! | AAAAACAATTAACTAGCAAA+AGG | - | chr7_2:20348817-20348836 | None:intergenic | 20.0% |
| !! | TAAGTAACTTTTAGCATTGT+AGG | + | chr7_2:20343869-20343888 | Msa1052160:intron | 25.0% |
| ! | TTAAGTTCTTTAACCAAACA+TGG | - | chr7_2:20343934-20343953 | None:intergenic | 25.0% |
| !! | TTTGTAAAGTATTTGAAGCA+TGG | + | chr7_2:20344176-20344195 | Msa1052160:intron | 25.0% |
| !! | AGATAATTTTCAAACCATTC+TGG | + | chr7_2:20344240-20344259 | Msa1052160:intron | 25.0% |
| ! | TACAATGCTTAATTATCTTC+AGG | - | chr7_2:20344300-20344319 | None:intergenic | 25.0% |
| !! | GAAGATAATTAAGCATTGTA+AGG | + | chr7_2:20344300-20344319 | Msa1052160:CDS | 25.0% |
| ! | ATTTCAAAAATTTGCAGATG+AGG | + | chr7_2:20344496-20344515 | Msa1052160:intron | 25.0% |
| ! | TTTCAAAAATTTGCAGATGA+GGG | + | chr7_2:20344497-20344516 | Msa1052160:intron | 25.0% |
| ! | TAATCACTTATCTAACATGA+TGG | + | chr7_2:20344684-20344703 | Msa1052160:intron | 25.0% |
| ! | TATTACCTGGTAATTCATAA+AGG | - | chr7_2:20344778-20344797 | None:intergenic | 25.0% |
| !! | TCAAATGGTATAATCTTTTG+TGG | - | chr7_2:20345069-20345088 | None:intergenic | 25.0% |
| ! | AATTATCAGTTAATCGTTAG+AGG | - | chr7_2:20345177-20345196 | None:intergenic | 25.0% |
| ! | TATTCATAAATGTGTGACAA+CGG | + | chr7_2:20345386-20345405 | Msa1052160:intron | 25.0% |
| !! | TGTTGAAATTTAGAATGTGT+AGG | + | chr7_2:20346087-20346106 | Msa1052160:intron | 25.0% |
| ! | TAAGCAGTTCAGAATTAAAT+AGG | - | chr7_2:20346283-20346302 | None:intergenic | 25.0% |
| ! | CAAAATATTGTAGTTTACCT+GGG | - | chr7_2:20346401-20346420 | None:intergenic | 25.0% |
| ! | TTGTAGTACAAAATTGACAA+GGG | - | chr7_2:20347202-20347221 | None:intergenic | 25.0% |
| ! | ATTGTAGTACAAAATTGACA+AGG | - | chr7_2:20347203-20347222 | None:intergenic | 25.0% |
| ! | TTTAGATGGTTTGAAGATAA+AGG | + | chr7_2:20347244-20347263 | Msa1052160:intron | 25.0% |
| ! | CTTCAAAATTACATAGCTTA+AGG | - | chr7_2:20347656-20347675 | None:intergenic | 25.0% |
| ! | ATAATAGACTGAACTAATTG+AGG | - | chr7_2:20348090-20348109 | None:intergenic | 25.0% |
| ! | TCAATTAGTTCAGTCTATTA+TGG | + | chr7_2:20348089-20348108 | Msa1052160:intron | 25.0% |
| !!! | TTTCGGTTTTTGTTATTACA+GGG | + | chr7_2:20348112-20348131 | Msa1052160:intron | 25.0% |
| !!! | TGGAAATTTGATTTGTTATG+AGG | - | chr7_2:20348244-20348263 | None:intergenic | 25.0% |
| ! | TTTAAGAGTAACCTTTAACT+TGG | - | chr7_2:20348314-20348333 | None:intergenic | 25.0% |
| !!! | TATGGTTTTGGTTATTTTAG+TGG | - | chr7_2:20348368-20348387 | None:intergenic | 25.0% |
| ! | AAAACCTGATTAAAACTTTC+TGG | + | chr7_2:20348438-20348457 | Msa1052160:intron | 25.0% |
| ! | CATAATATTCTCATCCATAT+AGG | - | chr7_2:20348669-20348688 | None:intergenic | 25.0% |
| ! | AATATTATGATGCACAATAG+AGG | + | chr7_2:20348680-20348699 | Msa1052160:three_prime_UTR | 25.0% |
| ! | AATAGAGGATTATTGTTTCA+AGG | + | chr7_2:20348695-20348714 | Msa1052160:three_prime_UTR | 25.0% |
| TTACTTATAGTAGCCATGAT+TGG | - | chr7_2:20343437-20343456 | None:intergenic | 30.0% | |
| GAAAAAATCGGAAAAAAGAG+AGG | - | chr7_2:20343481-20343500 | None:intergenic | 30.0% | |
| !! | TCTTTATTTGGGGTTTTGAT+AGG | + | chr7_2:20343710-20343729 | Msa1052160:intron | 30.0% |
| !!! | GGTTTTATTGTTTGGAATTG+CGG | + | chr7_2:20343731-20343750 | Msa1052160:intron | 30.0% |
| !! | GTTTTATTGTTTGGAATTGC+GGG | + | chr7_2:20343732-20343751 | Msa1052160:intron | 30.0% |
| ! | TGTTTTCAGCTTATTTCCAT+AGG | - | chr7_2:20344031-20344050 | None:intergenic | 30.0% |
| TCTAATAAGTCAATCCAAAC+TGG | + | chr7_2:20344129-20344148 | Msa1052160:intron | 30.0% | |
| AAATCATACATACCATCCAA+CGG | - | chr7_2:20344610-20344629 | None:intergenic | 30.0% | |
| CCAAATCATACATATGTAAG+TGG | - | chr7_2:20344641-20344660 | None:intergenic | 30.0% | |
| CCACTTACATATGTATGATT+TGG | + | chr7_2:20344638-20344657 | Msa1052160:intron | 30.0% | |
| ATGGATAATTCTCTGAATCT+AGG | + | chr7_2:20344703-20344722 | Msa1052160:intron | 30.0% | |
| TGAAACCTTTATGAATTACC+AGG | + | chr7_2:20344770-20344789 | Msa1052160:CDS | 30.0% | |
| TATACAAATCCACAAAACTC+TGG | - | chr7_2:20344842-20344861 | None:intergenic | 30.0% | |
| GCTTCTAAGTTATTCAATCT+TGG | + | chr7_2:20344941-20344960 | Msa1052160:intron | 30.0% | |
| TTGCAATAACCTTTCAGTAA+TGG | - | chr7_2:20344976-20344995 | None:intergenic | 30.0% | |
| ATGATAAGTAGCCAATCAAA+TGG | - | chr7_2:20345084-20345103 | None:intergenic | 30.0% | |
| CATAATATATGACCCATCAA+GGG | + | chr7_2:20345533-20345552 | Msa1052160:CDS | 30.0% | |
| ! | TATCGCAGCAATAATTTTAC+TGG | + | chr7_2:20345615-20345634 | Msa1052160:CDS | 30.0% |
| TGATCAAAACACATTCATCA+TGG | + | chr7_2:20345923-20345942 | Msa1052160:intron | 30.0% | |
| GGATTGTAGTATAAGAATCT+TGG | + | chr7_2:20345947-20345966 | Msa1052160:intron | 30.0% | |
| TGATCAAAACACATTCATCA+TGG | + | chr7_2:20345923-20345942 | Msa1052160:intron | 30.0% | |
| TGTCAACTAGACTATAATCT+TGG | + | chr7_2:20346251-20346270 | Msa1052160:intron | 30.0% | |
| GTTCAGAATTAAATAGGAAG+TGG | - | chr7_2:20346277-20346296 | None:intergenic | 30.0% | |
| !! | AGTCATAAAAGCACTGATAA+GGG | - | chr7_2:20346353-20346372 | None:intergenic | 30.0% |
| GCAAAATATTGTAGTTTACC+TGG | - | chr7_2:20346402-20346421 | None:intergenic | 30.0% | |
| ATTATCAACCAGTTCACTAA+TGG | + | chr7_2:20346504-20346523 | Msa1052160:CDS | 30.0% | |
| TTCACTAATGGAGAGAAATA+TGG | + | chr7_2:20346516-20346535 | Msa1052160:CDS | 30.0% | |
| !! | GGAATTTTTGATTGAATGCA+TGG | + | chr7_2:20346537-20346556 | Msa1052160:CDS | 30.0% |
| !!! | ACAAACCTTTTGTTGTTCAA+TGG | - | chr7_2:20346572-20346591 | None:intergenic | 30.0% |
| TTCAGTTTCAATTCCATTAC+CGG | + | chr7_2:20346663-20346682 | Msa1052160:intron | 30.0% | |
| GAAGATTATGTGTTAACGTA+TGG | - | chr7_2:20346823-20346842 | None:intergenic | 30.0% | |
| TGATTTAGCATTCTGATACA+CGG | - | chr7_2:20346953-20346972 | None:intergenic | 30.0% | |
| TATCAGAATGCTAAATCAAC+TGG | + | chr7_2:20346955-20346974 | Msa1052160:intron | 30.0% | |
| ATCAGAATGCTAAATCAACT+GGG | + | chr7_2:20346956-20346975 | Msa1052160:intron | 30.0% | |
| GTAGATAGGTTTCAATATGA+TGG | + | chr7_2:20346998-20347017 | Msa1052160:intron | 30.0% | |
| ! | TTAGGAGTATGCTAGAAATT+TGG | + | chr7_2:20347342-20347361 | Msa1052160:intron | 30.0% |
| GAAATTTGGACTAAACGTTA+AGG | + | chr7_2:20347356-20347375 | Msa1052160:intron | 30.0% | |
| GATTTACACGAAAATTTACC+TGG | + | chr7_2:20347384-20347403 | Msa1052160:intron | 30.0% | |
| !! | GCTATGTAATTTTGAAGATG+CGG | + | chr7_2:20347659-20347678 | Msa1052160:intron | 30.0% |
| !! | CTATGTAATTTTGAAGATGC+GGG | + | chr7_2:20347660-20347679 | Msa1052160:intron | 30.0% |
| ! | TGTGATGTATCTTAGGATTT+TGG | + | chr7_2:20347683-20347702 | Msa1052160:intron | 30.0% |
| ! | GTGATGTATCTTAGGATTTT+GGG | + | chr7_2:20347684-20347703 | Msa1052160:intron | 30.0% |
| TTGTGAAGATCGAAATTCAT+TGG | - | chr7_2:20347919-20347938 | None:intergenic | 30.0% | |
| AGTTCAGTCTATTATGGTTT+CGG | + | chr7_2:20348095-20348114 | Msa1052160:intron | 30.0% | |
| !!! | GTTTCGGTTTTTGTTATTAC+AGG | + | chr7_2:20348111-20348130 | Msa1052160:intron | 30.0% |
| !! | ATTGATTTGGTTGCAATAGT+TGG | - | chr7_2:20348264-20348283 | None:intergenic | 30.0% |
| AACTATTGCAACCAAATCAA+TGG | + | chr7_2:20348263-20348282 | Msa1052160:intron | 30.0% | |
| ACTATTGCAACCAAATCAAT+GGG | + | chr7_2:20348264-20348283 | Msa1052160:intron | 30.0% | |
| GTTCAATTAGTTGAATTGTC+CGG | + | chr7_2:20348405-20348424 | Msa1052160:intron | 30.0% | |
| !!! | TCAGGTTTTAAAAACTGAAC+CGG | - | chr7_2:20348427-20348446 | None:intergenic | 30.0% |
| !! | AACACCAGAAAGTTTTAATC+AGG | - | chr7_2:20348445-20348464 | None:intergenic | 30.0% |
| ! | TAACAGACTTTATTTGCTGA+AGG | + | chr7_2:20348563-20348582 | Msa1052160:CDS | 30.0% |
| ATCTACAATCTTCAGTAGTT+GGG | + | chr7_2:20348842-20348861 | Msa1052160:three_prime_UTR | 30.0% | |
| !! | TTTTTGGTGAGTGGTGTATT+GGG | - | chr7_2:20343301-20343320 | None:intergenic | 35.0% |
| AATCGCTGTGAAAATCGATA+GGG | - | chr7_2:20343387-20343406 | None:intergenic | 35.0% | |
| AAATCGCTGTGAAAATCGAT+AGG | - | chr7_2:20343388-20343407 | None:intergenic | 35.0% | |
| ATAGTAGCCATGATTGGAAT+CGG | - | chr7_2:20343431-20343450 | None:intergenic | 35.0% | |
| TCGGAAAAAAGAGAGGAAAA+TGG | - | chr7_2:20343474-20343493 | None:intergenic | 35.0% | |
| TGCGAAAAACGAATCAACAA+TGG | - | chr7_2:20343521-20343540 | None:intergenic | 35.0% | |
| ATTTCTTCAAGCTGTTGCAA+CGG | + | chr7_2:20343555-20343574 | Msa1052160:CDS | 35.0% | |
| !! | TCTCTGTTTGATTTTGCATC+TGG | + | chr7_2:20343755-20343774 | Msa1052160:intron | 35.0% |
| !! | CTCTGTTTGATTTTGCATCT+GGG | + | chr7_2:20343756-20343775 | Msa1052160:intron | 35.0% |
| ACTAACATAAACCAGGAAAG+AGG | - | chr7_2:20343905-20343924 | None:intergenic | 35.0% | |
| TCTTTAACCAAACATGGTCA+TGG | - | chr7_2:20343928-20343947 | None:intergenic | 35.0% | |
| AAGCTATTAAAGAGAGCCTA+TGG | + | chr7_2:20344012-20344031 | Msa1052160:intron | 35.0% | |
| AGATTGTTTGAGTGAGCTTA+TGG | - | chr7_2:20344082-20344101 | None:intergenic | 35.0% | |
| CATACAAGGCTACATGAAAT+GGG | - | chr7_2:20344156-20344175 | None:intergenic | 35.0% | |
| ACATACAAGGCTACATGAAA+TGG | - | chr7_2:20344157-20344176 | None:intergenic | 35.0% | |
| AACCAAAAGATAACACCATC+AGG | - | chr7_2:20344267-20344286 | None:intergenic | 35.0% | |
| !! | GGTGTTATCTTTTGGTTAAC+AGG | + | chr7_2:20344270-20344289 | Msa1052160:intron | 35.0% |
| AAAAAGAAGGGATACCATAC+CGG | - | chr7_2:20344409-20344428 | None:intergenic | 35.0% | |
| CATCATTTCAAGCTGGTAAT+TGG | - | chr7_2:20344553-20344572 | None:intergenic | 35.0% | |
| ATTACCAGCTTGAAATGATG+AGG | + | chr7_2:20344553-20344572 | Msa1052160:CDS | 35.0% | |
| AATGTGGACAATAATACCGT+TGG | + | chr7_2:20344591-20344610 | Msa1052160:CDS | 35.0% | |
| GGCTACTTATCATGATATTG+AGG | + | chr7_2:20345091-20345110 | Msa1052160:intron | 35.0% | |
| ATTTGTGCCAGTGAAAATGT+AGG | + | chr7_2:20345231-20345250 | Msa1052160:intron | 35.0% | |
| ! | TCAACTTCCTACATTTTCAC+TGG | - | chr7_2:20345241-20345260 | None:intergenic | 35.0% |
| ! | ACAACGGTGATTTTGTCATA+TGG | + | chr7_2:20345402-20345421 | Msa1052160:intron | 35.0% |
| ! | CAACGGTGATTTTGTCATAT+GGG | + | chr7_2:20345403-20345422 | Msa1052160:intron | 35.0% |
| GCATAATATATGACCCATCA+AGG | + | chr7_2:20345532-20345551 | Msa1052160:CDS | 35.0% | |
| !! | GAGAAGTATGTGTTTTCTTC+TGG | + | chr7_2:20345639-20345658 | Msa1052160:intron | 35.0% |
| TCAAAACACATTCATCATGG+TGG | + | chr7_2:20345926-20345945 | Msa1052160:intron | 35.0% | |
| TGTCAACTAGACTGTAATCT+TGG | + | chr7_2:20346023-20346042 | Msa1052160:intron | 35.0% | |
| TCAAAACACATTCATCATGG+TGG | + | chr7_2:20345926-20345945 | Msa1052160:intron | 35.0% | |
| GGATTGCAGTATAAGAATCT+TGG | + | chr7_2:20346174-20346193 | Msa1052160:intron | 35.0% | |
| !! | CAGTCATAAAAGCACTGATA+AGG | - | chr7_2:20346354-20346373 | None:intergenic | 35.0% |
| ATTTCTCTCCATTAGTGAAC+TGG | - | chr7_2:20346515-20346534 | None:intergenic | 35.0% | |
| CTTGTCCATTGAACAACAAA+AGG | + | chr7_2:20346564-20346583 | Msa1052160:CDS | 35.0% | |
| GATTTAGCATTCTGATACAC+GGG | - | chr7_2:20346952-20346971 | None:intergenic | 35.0% | |
| ! | TTTGCTATGGTTGATTTCAG+TGG | + | chr7_2:20347038-20347057 | Msa1052160:intron | 35.0% |
| ! | TTGCTATGGTTGATTTCAGT+GGG | + | chr7_2:20347039-20347058 | Msa1052160:intron | 35.0% |
| TTGTGACGATACTTCTATGA+TGG | + | chr7_2:20347151-20347170 | Msa1052160:intron | 35.0% | |
| !!! | AGTTTTTTGCAAAGCGTTGT+AGG | + | chr7_2:20347278-20347297 | Msa1052160:intron | 35.0% |
| TTGTAGGAGCTCTATTATCT+AGG | + | chr7_2:20347294-20347313 | Msa1052160:intron | 35.0% | |
| GTAGACGAAGTTACTATGTT+AGG | + | chr7_2:20347324-20347343 | Msa1052160:intron | 35.0% | |
| CGAAAATTTACCTGGTGAAA+AGG | + | chr7_2:20347392-20347411 | Msa1052160:intron | 35.0% | |
| !! | TACATAGCTTAAGGGCATTT+GGG | - | chr7_2:20347647-20347666 | None:intergenic | 35.0% |
| !! | TTACATAGCTTAAGGGCATT+TGG | - | chr7_2:20347648-20347667 | None:intergenic | 35.0% |
| ! | ATGTATCTTAGGATTTTGGG+TGG | + | chr7_2:20347687-20347706 | Msa1052160:intron | 35.0% |
| ATGATTTGACAATCGTCAGA+GGG | - | chr7_2:20347756-20347775 | None:intergenic | 35.0% | |
| !!! | AGTTTTTAGCTGAAAACTCC+TGG | - | chr7_2:20347781-20347800 | None:intergenic | 35.0% |
| ! | CTTGATGGACAAAATCTAAG+TGG | - | chr7_2:20347838-20347857 | None:intergenic | 35.0% |
| TTCAAACAATGGCAACTTGA+TGG | - | chr7_2:20347853-20347872 | None:intergenic | 35.0% | |
| CCAGTTGAAACTTCAAACAA+TGG | - | chr7_2:20347864-20347883 | None:intergenic | 35.0% | |
| ! | CCATTGTTTGAAGTTTCAAC+TGG | + | chr7_2:20347861-20347880 | Msa1052160:intron | 35.0% |
| ! | GATCTTCACAATATTGACTG+TGG | + | chr7_2:20347928-20347947 | Msa1052160:intron | 35.0% |
| !! | TTTGATGGTGACCAAGTTAA+AGG | + | chr7_2:20348300-20348319 | Msa1052160:intron | 35.0% |
| TACTCTTAAATCACTCGAAC+CGG | + | chr7_2:20348324-20348343 | Msa1052160:intron | 35.0% | |
| !!! | TTATTTTAGTGGTTCAGTCG+TGG | - | chr7_2:20348357-20348376 | None:intergenic | 35.0% |
| ACCAAAACCATAGTAAAGTC+TGG | + | chr7_2:20348376-20348395 | Msa1052160:intron | 35.0% | |
| ! | ACCAGACTTTACTATGGTTT+TGG | - | chr7_2:20348380-20348399 | None:intergenic | 35.0% |
| ! | AACCATGATTAAGCACTGTT+TGG | - | chr7_2:20348500-20348519 | None:intergenic | 35.0% |
| ! | TTTTTCTCTTGATGTTCTGC+AGG | + | chr7_2:20348523-20348542 | Msa1052160:intron | 35.0% |
| ! | TTTTCTCTTGATGTTCTGCA+GGG | + | chr7_2:20348524-20348543 | Msa1052160:intron | 35.0% |
| GATCTACAATCTTCAGTAGT+TGG | + | chr7_2:20348841-20348860 | Msa1052160:three_prime_UTR | 35.0% | |
| !!! | GTTTTTGGTGAGTGGTGTAT+TGG | - | chr7_2:20343302-20343321 | None:intergenic | 40.0% |
| CAAAAACTCCTCTCTTTCTC+CGG | + | chr7_2:20343315-20343334 | Msa1052160:five_prime_UTR | 40.0% | |
| ATCGCTGTGAAAATCGATAG+GGG | - | chr7_2:20343386-20343405 | None:intergenic | 40.0% | |
| ATTGGAATCGGAATCGGAAT+CGG | - | chr7_2:20343419-20343438 | None:intergenic | 40.0% | |
| TCCTCTTAGAGTTGTTCAGA+TGG | + | chr7_2:20343591-20343610 | Msa1052160:CDS | 40.0% | |
| TCCATCTGAACAACTCTAAG+AGG | - | chr7_2:20343595-20343614 | None:intergenic | 40.0% | |
| CTTAGAGTTGTTCAGATGGA+AGG | + | chr7_2:20343595-20343614 | Msa1052160:CDS | 40.0% | |
| AGTTGTTCAGATGGAAGGAT+TGG | + | chr7_2:20343600-20343619 | Msa1052160:CDS | 40.0% | |
| ! | GTCATGGACTAACATAAACC+AGG | - | chr7_2:20343912-20343931 | None:intergenic | 40.0% |
| TGTTAGTCCATGACCATGTT+TGG | + | chr7_2:20343918-20343937 | Msa1052160:intron | 40.0% | |
| TACATGAAATGGGTCCAGTT+TGG | - | chr7_2:20344146-20344165 | None:intergenic | 40.0% | |
| GAAGAATTCCTAGCAACATG+AGG | - | chr7_2:20344202-20344221 | None:intergenic | 40.0% | |
| !!! | GTCCTGATGGTGTTATCTTT+TGG | + | chr7_2:20344262-20344281 | Msa1052160:intron | 40.0% |
| AGTTGTCCAGTGACTAAAGA+AGG | - | chr7_2:20344334-20344353 | None:intergenic | 40.0% | |
| TTAGTCACTGGACAACTTCT+TGG | + | chr7_2:20344337-20344356 | Msa1052160:CDS | 40.0% | |
| ! | CAACTTCTTGGATTGGATGT+TGG | + | chr7_2:20344349-20344368 | Msa1052160:CDS | 40.0% |
| ! | TACTAACTGCTTCCCTTTTC+CGG | + | chr7_2:20344387-20344406 | Msa1052160:CDS | 40.0% |
| AAATTTGCAGATGAGGGAAG+AGG | + | chr7_2:20344503-20344522 | Msa1052160:intron | 40.0% | |
| GATGAGGAAATTGAAGCTGA+TGG | + | chr7_2:20344525-20344544 | Msa1052160:CDS | 40.0% | |
| TGGACAATAATACCGTTGGA+TGG | + | chr7_2:20344595-20344614 | Msa1052160:CDS | 40.0% | |
| AGTTTGATATGAGCCAAGCA+GGG | - | chr7_2:20344739-20344758 | None:intergenic | 40.0% | |
| ! | CACTTAAAGCCAGAGTTTTG+TGG | + | chr7_2:20344830-20344849 | Msa1052160:intron | 40.0% |
| TCAGATGAGCCATTACTGAA+AGG | + | chr7_2:20344964-20344983 | Msa1052160:intron | 40.0% | |
| !! | CACGTATTTGTTTGGCCTTT+TGG | - | chr7_2:20345039-20345058 | None:intergenic | 40.0% |
| CAAAAGGCCAAACAAATACG+TGG | + | chr7_2:20345037-20345056 | Msa1052160:intron | 40.0% | |
| GTCCATACCACGTATTTGTT+TGG | - | chr7_2:20345047-20345066 | None:intergenic | 40.0% | |
| CAGATGTTAGCATTGTTCGT+TGG | + | chr7_2:20345141-20345160 | Msa1052160:intron | 40.0% | |
| AAAAGAGAGCGAGAAAACCT+AGG | - | chr7_2:20345343-20345362 | None:intergenic | 40.0% | |
| GAAGCTTTCAGACTCATTCA+TGG | + | chr7_2:20345587-20345606 | Msa1052160:CDS | 40.0% | |
| TGAGGGAGAAGAACTTATCA+TGG | + | chr7_2:20345731-20345750 | Msa1052160:CDS | 40.0% | |
| GAGGGAGAAGAACTTATCAT+GGG | + | chr7_2:20345732-20345751 | Msa1052160:CDS | 40.0% | |
| CTGTATTCATTGTGACCACT+CGG | + | chr7_2:20346903-20346922 | Msa1052160:intron | 40.0% | |
| CATTCGTTCTCTTGGTAGAT+AGG | + | chr7_2:20346984-20347003 | Msa1052160:intron | 40.0% | |
| !! | TATGATGGATTCATCCGTTG+TGG | + | chr7_2:20347013-20347032 | Msa1052160:intron | 40.0% |
| AACCATAGCAAACACCACAA+CGG | - | chr7_2:20347030-20347049 | None:intergenic | 40.0% | |
| AATGAAGTATGCAGAGCTTG+TGG | - | chr7_2:20347078-20347097 | None:intergenic | 40.0% | |
| ! | GACGATACTTCTATGATGGA+AGG | + | chr7_2:20347155-20347174 | Msa1052160:intron | 40.0% |
| TTGTAAAACATACCCACAGG+TGG | - | chr7_2:20347466-20347485 | None:intergenic | 40.0% | |
| GACTTGTAAAACATACCCAC+AGG | - | chr7_2:20347469-20347488 | None:intergenic | 40.0% | |
| AATTGTGTCTTCGTGTCATG+TGG | + | chr7_2:20347536-20347555 | Msa1052160:intron | 40.0% | |
| CAAATTTCGGCACAATGAGA+TGG | - | chr7_2:20347576-20347595 | None:intergenic | 40.0% | |
| TCTCATTGTGCCGAAATTTG+CGG | + | chr7_2:20347576-20347595 | Msa1052160:intron | 40.0% | |
| !! | ACATAGCTTAAGGGCATTTG+GGG | - | chr7_2:20347646-20347665 | None:intergenic | 40.0% |
| CATGATTTGACAATCGTCAG+AGG | - | chr7_2:20347757-20347776 | None:intergenic | 40.0% | |
| CTCTGACGATTGTCAAATCA+TGG | + | chr7_2:20347755-20347774 | Msa1052160:intron | 40.0% | |
| AAGTGGAAAAACAGAGCACA+TGG | - | chr7_2:20347821-20347840 | None:intergenic | 40.0% | |
| GACTGAACTAATTGAGGACA+AGG | - | chr7_2:20348084-20348103 | None:intergenic | 40.0% | |
| TTATTACAGGGCCGATAACA+TGG | + | chr7_2:20348124-20348143 | Msa1052160:intron | 40.0% | |
| CCTTGAACCAGACTTTACTA+TGG | - | chr7_2:20348386-20348405 | None:intergenic | 40.0% | |
| ! | CCATAGTAAAGTCTGGTTCA+AGG | + | chr7_2:20348383-20348402 | Msa1052160:intron | 40.0% |
| !! | TCTGGTGTTACCCTTATTAG+TGG | + | chr7_2:20348456-20348475 | Msa1052160:intron | 40.0% |
| AGCCAAACAGTGCTTAATCA+TGG | + | chr7_2:20348495-20348514 | Msa1052160:intron | 40.0% | |
| !!! | AGAGAGGAGTTTTTGGTGAG+TGG | - | chr7_2:20343310-20343329 | None:intergenic | 45.0% |
| ! | CGGAGAAAGAGAGGAGTTTT+TGG | - | chr7_2:20343317-20343336 | None:intergenic | 45.0% |
| CGATAGGGGATGAGGAAAAA+GGG | - | chr7_2:20343372-20343391 | None:intergenic | 45.0% | |
| TCGATAGGGGATGAGGAAAA+AGG | - | chr7_2:20343373-20343392 | None:intergenic | 45.0% | |
| GTGAAAATCGATAGGGGATG+AGG | - | chr7_2:20343380-20343399 | None:intergenic | 45.0% | |
| TCCGATTCCGATTCCAATCA+TGG | + | chr7_2:20343421-20343440 | Msa1052160:exon | 45.0% | |
| GCCATGATTGGAATCGGAAT+CGG | - | chr7_2:20343425-20343444 | None:intergenic | 45.0% | |
| GTGTGTATGTACCTCTTTCC+TGG | + | chr7_2:20343891-20343910 | Msa1052160:intron | 45.0% | |
| TCAAACCATTCTGGTCCTGA+TGG | + | chr7_2:20344249-20344268 | Msa1052160:intron | 45.0% | |
| TAACACCATCAGGACCAGAA+TGG | - | chr7_2:20344257-20344276 | None:intergenic | 45.0% | |
| CACTCACCTTCTTTAGTCAC+TGG | + | chr7_2:20344325-20344344 | Msa1052160:CDS | 45.0% | |
| CACTGGACAACTTCTTGGAT+TGG | + | chr7_2:20344342-20344361 | Msa1052160:CDS | 45.0% | |
| AGGGATACCATACCGGAAAA+GGG | - | chr7_2:20344402-20344421 | None:intergenic | 45.0% | |
| AAGGGATACCATACCGGAAA+AGG | - | chr7_2:20344403-20344422 | None:intergenic | 45.0% | |
| AGCACCTCATCATTTCAAGC+TGG | - | chr7_2:20344560-20344579 | None:intergenic | 45.0% | |
| ! | AATGATGAGGTGCTTGAGAG+AGG | + | chr7_2:20344566-20344585 | Msa1052160:CDS | 45.0% |
| CAGTTTGATATGAGCCAAGC+AGG | - | chr7_2:20344740-20344759 | None:intergenic | 45.0% | |
| GCTTGGCTCATATCAAACTG+TGG | + | chr7_2:20344740-20344759 | Msa1052160:CDS | 45.0% | |
| GGCCAAACAAATACGTGGTA+TGG | + | chr7_2:20345042-20345061 | Msa1052160:intron | 45.0% | |
| !! | GTGCTTTTTGCATTGTTCCG+AGG | + | chr7_2:20345203-20345222 | Msa1052160:intron | 45.0% |
| ACTGGCACAAATTTCTGCCT+CGG | - | chr7_2:20345223-20345242 | None:intergenic | 45.0% | |
| GGAGAAGAACTTATCATGGG+TGG | + | chr7_2:20345735-20345754 | Msa1052160:CDS | 45.0% | |
| ! | CAGTGCTTTTATGACTGAGC+TGG | + | chr7_2:20346357-20346376 | Msa1052160:CDS | 45.0% |
| TTGTAGTTTACCTGGGTGAC+TGG | - | chr7_2:20346394-20346413 | None:intergenic | 45.0% | |
| AAGCATGGCTTCAGAAGAGA+AGG | + | chr7_2:20346714-20346733 | Msa1052160:CDS | 45.0% | |
| TGGCTTCAGAAGAGAAGGTA+TGG | + | chr7_2:20346719-20346738 | Msa1052160:intron | 45.0% | |
| ATTCATTGTGACCACTCGGT+AGG | + | chr7_2:20346907-20346926 | Msa1052160:intron | 45.0% | |
| ! | GGGTTTTGCATTCGTTCTCT+TGG | + | chr7_2:20346976-20346995 | Msa1052160:intron | 45.0% |
| ! | ATCCGTTGTGGTGTTTGCTA+TGG | + | chr7_2:20347025-20347044 | Msa1052160:intron | 45.0% |
| ! | ATCTCAGCATCCTTTTCACC+AGG | - | chr7_2:20347405-20347424 | None:intergenic | 45.0% |
| GGTGAAAAGGATGCTGAGAT+TGG | + | chr7_2:20347405-20347424 | Msa1052160:intron | 45.0% | |
| ! | TTGGAGAGTGTGTGTTCCTA+TGG | + | chr7_2:20347424-20347443 | Msa1052160:intron | 45.0% |
| AGTGTGTGTTCCTATGGTCA+GGG | + | chr7_2:20347430-20347449 | Msa1052160:intron | 45.0% | |
| TGCTATTAAGCCCTGACCAT+AGG | - | chr7_2:20347443-20347462 | None:intergenic | 45.0% | |
| !! | TCGTTTGCTATTCACCACTC+TGG | - | chr7_2:20347507-20347526 | None:intergenic | 45.0% |
| GTGCGACAAACCGCAAATTT+CGG | - | chr7_2:20347589-20347608 | None:intergenic | 45.0% | |
| !! | ACACTTTTGGGTCGCAATTG+TGG | + | chr7_2:20347607-20347626 | Msa1052160:intron | 45.0% |
| ATGCGGGTGTGATGTATCTT+AGG | + | chr7_2:20347676-20347695 | Msa1052160:intron | 45.0% | |
| ACGATTGTCAAATCATGGCC+AGG | + | chr7_2:20347760-20347779 | Msa1052160:intron | 45.0% | |
| ACTCTCAAGTCGTGATGGTT+CGG | - | chr7_2:20348219-20348238 | None:intergenic | 45.0% | |
| AGGAAACTCTCAAGTCGTGA+TGG | - | chr7_2:20348224-20348243 | None:intergenic | 45.0% | |
| CTTAAATCACTCGAACCGGA+AGG | + | chr7_2:20348328-20348347 | Msa1052160:intron | 45.0% | |
| TTTGCTGAAGGCTTTGCATG+AGG | + | chr7_2:20348575-20348594 | Msa1052160:exon | 45.0% | |
| GGAAGAAGAAACCCTAACGC+CGG | - | chr7_2:20343337-20343356 | None:intergenic | 50.0% | |
| GAAAAAGGGTCGGAAGTTGC+AGG | - | chr7_2:20343358-20343377 | None:intergenic | 50.0% | |
| AGGGGATGAGGAAAAAGGGT+CGG | - | chr7_2:20343368-20343387 | None:intergenic | 50.0% | |
| ATCGGAATCGGAATCGGAAG+CGG | - | chr7_2:20343413-20343432 | None:intergenic | 50.0% | |
| ! | CGTTTTTCGCAGCTGCAACT+AGG | + | chr7_2:20343530-20343549 | Msa1052160:intron | 50.0% |
| TCAAGCTGTTGCAACGGAAG+AGG | + | chr7_2:20343561-20343580 | Msa1052160:CDS | 50.0% | |
| AAGCATGGCCTCATGTTGCT+AGG | + | chr7_2:20344191-20344210 | Msa1052160:intron | 50.0% | |
| ! | ACTGCTTCCCTTTTCCGGTA+TGG | + | chr7_2:20344392-20344411 | Msa1052160:intron | 50.0% |
| GTGCTTGAGAGAGGTCAATG+TGG | + | chr7_2:20344575-20344594 | Msa1052160:CDS | 50.0% | |
| ACCCATCAAGGGCTGATCAA+GGG | + | chr7_2:20345544-20345563 | Msa1052160:CDS | 50.0% | |
| ATCATGGGTGGACATCTTCG+AGG | + | chr7_2:20345747-20345766 | Msa1052160:CDS | 50.0% | |
| ! | CAAAGTTCCAGAGCGCTTAC+GGG | - | chr7_2:20345778-20345797 | None:intergenic | 50.0% |
| ! | GCAAAGTTCCAGAGCGCTTA+CGG | - | chr7_2:20345779-20345798 | None:intergenic | 50.0% |
| AAATTCCCTAGCCTACCGAG+TGG | - | chr7_2:20346921-20346940 | None:intergenic | 50.0% | |
| GAGTGTGTGTTCCTATGGTC+AGG | + | chr7_2:20347429-20347448 | Msa1052160:intron | 50.0% | |
| GGCTTAATAGCACCACCTGT+GGG | + | chr7_2:20347451-20347470 | Msa1052160:intron | 50.0% | |
| GTAGCATGTTCTGTCCAGAG+TGG | + | chr7_2:20347490-20347509 | Msa1052160:intron | 50.0% | |
| GTGTCATGTGGCTGGTATCT+AGG | + | chr7_2:20347548-20347567 | Msa1052160:intron | 50.0% | |
| ! | TGCGGTTTGTCGCACACTTT+TGG | + | chr7_2:20347594-20347613 | Msa1052160:intron | 50.0% |
| ! | GCGGTTTGTCGCACACTTTT+GGG | + | chr7_2:20347595-20347614 | Msa1052160:intron | 50.0% |
| !! | TAGCTTAAGGGCATTTGGGG+TGG | - | chr7_2:20347643-20347662 | None:intergenic | 50.0% |
| GACAATCGTCAGAGGGCAAT+GGG | - | chr7_2:20347749-20347768 | None:intergenic | 50.0% | |
| TGACAATCGTCAGAGGGCAA+TGG | - | chr7_2:20347750-20347769 | None:intergenic | 50.0% | |
| GGAAAAACAGAGCACATGGC+AGG | - | chr7_2:20347817-20347836 | None:intergenic | 50.0% | |
| AGCTCTGCGTGCCATGTTAT+CGG | - | chr7_2:20348138-20348157 | None:intergenic | 50.0% | |
| GGCTTGAAAATGGGGTTTGC+AGG | - | chr7_2:20348191-20348210 | None:intergenic | 50.0% | |
| !! | AAACCCCATTTTCAAGCCGC+TGG | + | chr7_2:20348193-20348212 | Msa1052160:CDS | 50.0% |
| GTTCAGTCGTGGATTCCTTC+CGG | - | chr7_2:20348346-20348365 | None:intergenic | 50.0% | |
| TTGATGTTCTGCAGGGTTGC+TGG | + | chr7_2:20348531-20348550 | Msa1052160:intron | 50.0% | |
| TGATGTTCTGCAGGGTTGCT+GGG | + | chr7_2:20348532-20348551 | Msa1052160:intron | 50.0% | |
| TCCTCTCTTTCTCCGGCGTT+AGG | + | chr7_2:20343322-20343341 | Msa1052160:five_prime_UTR | 55.0% | |
| CCTCTCTTTCTCCGGCGTTA+GGG | + | chr7_2:20343323-20343342 | Msa1052160:five_prime_UTR | 55.0% | |
| GCAGATGAGGGAAGAGGATG+AGG | + | chr7_2:20344509-20344528 | Msa1052160:intron | 55.0% | |
| AGGTACCAGTCTACCCTGCT+TGG | + | chr7_2:20344723-20344742 | Msa1052160:intron | 55.0% | |
| ATGAGCCAAGCAGGGTAGAC+TGG | - | chr7_2:20344731-20344750 | None:intergenic | 55.0% | |
| ! | TTATGCTGCTTCCGCTGCCT+AGG | + | chr7_2:20345323-20345342 | Msa1052160:intron | 55.0% |
| GAGCGAGAAAACCTAGGCAG+CGG | - | chr7_2:20345337-20345356 | None:intergenic | 55.0% | |
| GACCCATCAAGGGCTGATCA+AGG | + | chr7_2:20345543-20345562 | Msa1052160:CDS | 55.0% | |
| CCCCTTGATCAGCCCTTGAT+GGG | - | chr7_2:20345548-20345567 | None:intergenic | 55.0% | |
| CCCATCAAGGGCTGATCAAG+GGG | + | chr7_2:20345545-20345564 | Msa1052160:CDS | 55.0% | |
| ACCCCTTGATCAGCCCTTGA+TGG | - | chr7_2:20345549-20345568 | None:intergenic | 55.0% | |
| !! | TCAAGGGGTCCTAGCTCTGA+AGG | + | chr7_2:20345560-20345579 | Msa1052160:CDS | 55.0% |
| GCTTCAACGCCTTCAGAGCT+AGG | - | chr7_2:20345572-20345591 | None:intergenic | 55.0% | |
| GGAAATTCCCGTAAGCGCTC+TGG | + | chr7_2:20345768-20345787 | Msa1052160:intron | 55.0% | |
| ACCTGATACTCCAGTCACCC+AGG | + | chr7_2:20346381-20346400 | Msa1052160:CDS | 55.0% | |
| ! | ACCTGGGTGACTGGAGTATC+AGG | - | chr7_2:20346385-20346404 | None:intergenic | 55.0% |
| GACGAGACAAGCTCCGGTAA+TGG | - | chr7_2:20346679-20346698 | None:intergenic | 55.0% | |
| TTGTGACCACTCGGTAGGCT+AGG | + | chr7_2:20346912-20346931 | Msa1052160:intron | 55.0% | |
| TGTGACCACTCGGTAGGCTA+GGG | + | chr7_2:20346913-20346932 | Msa1052160:intron | 55.0% | |
| GGGCTTAATAGCACCACCTG+TGG | + | chr7_2:20347450-20347469 | Msa1052160:intron | 55.0% | |
| GTGTCTTCGTGTCATGTGGC+TGG | + | chr7_2:20347540-20347559 | Msa1052160:intron | 55.0% | |
| ATCGTCAGAGGGCAATGGGT+CGG | - | chr7_2:20347745-20347764 | None:intergenic | 55.0% | |
| GAGCACATGGCAGGAGTTGA+TGG | - | chr7_2:20347808-20347827 | None:intergenic | 55.0% | |
| GCAGGATCTTCCTCGGGTAA+AGG | - | chr7_2:20348173-20348192 | None:intergenic | 55.0% | |
| GGGTTTGCAGGATCTTCCTC+GGG | - | chr7_2:20348179-20348198 | None:intergenic | 55.0% | |
| GGGGTTTGCAGGATCTTCCT+CGG | - | chr7_2:20348180-20348199 | None:intergenic | 55.0% | |
| TCGGCCAGCGGCTTGAAAAT+GGG | - | chr7_2:20348200-20348219 | None:intergenic | 55.0% | |
| TTCGGCCAGCGGCTTGAAAA+TGG | - | chr7_2:20348201-20348220 | None:intergenic | 55.0% | |
| GCTGAAGGCTTTGCATGAGG+AGG | + | chr7_2:20348578-20348597 | Msa1052160:exon | 55.0% | |
| CCCTAACGCCGGAGAAAGAG+AGG | - | chr7_2:20343326-20343345 | None:intergenic | 60.0% | |
| CCTGCTGACGAGACAAGCTC+CGG | - | chr7_2:20346685-20346704 | None:intergenic | 60.0% | |
| AGCAGGCTCAGCAGCAAGCA+TGG | + | chr7_2:20346699-20346718 | Msa1052160:CDS | 60.0% | |
| CAGAGGGCAATGGGTCGGAT+GGG | - | chr7_2:20347740-20347759 | None:intergenic | 60.0% | |
| TCAGAGGGCAATGGGTCGGA+TGG | - | chr7_2:20347741-20347760 | None:intergenic | 60.0% | |
| AACATGGCACGCAGAGCTGC+TGG | + | chr7_2:20348140-20348159 | Msa1052160:CDS | 60.0% | |
| ACATGGCACGCAGAGCTGCT+GGG | + | chr7_2:20348141-20348160 | Msa1052160:CDS | 60.0% | |
| TGGGGAAGAGCCTTTACCCG+AGG | + | chr7_2:20348160-20348179 | Msa1052160:CDS | 60.0% | |
| CGGCCAGCGGCTTGAAAATG+GGG | - | chr7_2:20348199-20348218 | None:intergenic | 60.0% | |
| ! | AGTCGTGATGGTTCGGCCAG+CGG | - | chr7_2:20348212-20348231 | None:intergenic | 60.0% |
| CCGGAGCTTGTCTCGTCAGC+AGG | + | chr7_2:20346682-20346701 | Msa1052160:CDS | 65.0% | |
| CATGGCACGCAGAGCTGCTG+GGG | + | chr7_2:20348142-20348161 | Msa1052160:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 20343292 | 20348888 | 20343292 | ID=Msa1052160;Name=Msa1052160 |
| chr7_2 | mRNA | 20343292 | 20348888 | 20343292 | ID=Msa1052160-mRNA-1;Parent=Msa1052160;Name=Msa1052160-mRNA-1;_AED=0.11;_eAED=0.11;_QI=148|0.90|0.91|1|1|1|12|306|315 |
| chr7_2 | exon | 20343292 | 20343452 | 20343292 | ID=Msa1052160-mRNA-1:exon:4507;Parent=Msa1052160-mRNA-1 |
| chr7_2 | exon | 20343542 | 20343621 | 20343542 | ID=Msa1052160-mRNA-1:exon:4508;Parent=Msa1052160-mRNA-1 |
| chr7_2 | exon | 20344292 | 20344408 | 20344292 | ID=Msa1052160-mRNA-1:exon:4509;Parent=Msa1052160-mRNA-1 |
| chr7_2 | exon | 20344513 | 20344616 | 20344513 | ID=Msa1052160-mRNA-1:exon:4510;Parent=Msa1052160-mRNA-1 |
| chr7_2 | exon | 20344725 | 20344791 | 20344725 | ID=Msa1052160-mRNA-1:exon:4511;Parent=Msa1052160-mRNA-1 |
| chr7_2 | exon | 20345510 | 20345643 | 20345510 | ID=Msa1052160-mRNA-1:exon:4512;Parent=Msa1052160-mRNA-1 |
| chr7_2 | exon | 20345729 | 20345777 | 20345729 | ID=Msa1052160-mRNA-1:exon:4513;Parent=Msa1052160-mRNA-1 |
| chr7_2 | exon | 20346331 | 20346402 | 20346331 | ID=Msa1052160-mRNA-1:exon:4514;Parent=Msa1052160-mRNA-1 |
| chr7_2 | exon | 20346484 | 20346585 | 20346484 | ID=Msa1052160-mRNA-1:exon:4515;Parent=Msa1052160-mRNA-1 |
| chr7_2 | exon | 20346668 | 20346735 | 20346668 | ID=Msa1052160-mRNA-1:exon:4516;Parent=Msa1052160-mRNA-1 |
| chr7_2 | exon | 20348133 | 20348236 | 20348133 | ID=Msa1052160-mRNA-1:exon:4517;Parent=Msa1052160-mRNA-1 |
| chr7_2 | exon | 20348545 | 20348888 | 20348545 | ID=Msa1052160-mRNA-1:exon:4518;Parent=Msa1052160-mRNA-1 |
| chr7_2 | five_prime_UTR | 20343292 | 20343439 | 20343292 | ID=Msa1052160-mRNA-1:five_prime_utr;Parent=Msa1052160-mRNA-1 |
| chr7_2 | CDS | 20343440 | 20343452 | 20343440 | ID=Msa1052160-mRNA-1:cds;Parent=Msa1052160-mRNA-1 |
| chr7_2 | CDS | 20343542 | 20343621 | 20343542 | ID=Msa1052160-mRNA-1:cds;Parent=Msa1052160-mRNA-1 |
| chr7_2 | CDS | 20344292 | 20344408 | 20344292 | ID=Msa1052160-mRNA-1:cds;Parent=Msa1052160-mRNA-1 |
| chr7_2 | CDS | 20344513 | 20344616 | 20344513 | ID=Msa1052160-mRNA-1:cds;Parent=Msa1052160-mRNA-1 |
| chr7_2 | CDS | 20344725 | 20344791 | 20344725 | ID=Msa1052160-mRNA-1:cds;Parent=Msa1052160-mRNA-1 |
| chr7_2 | CDS | 20345510 | 20345643 | 20345510 | ID=Msa1052160-mRNA-1:cds;Parent=Msa1052160-mRNA-1 |
| chr7_2 | CDS | 20345729 | 20345777 | 20345729 | ID=Msa1052160-mRNA-1:cds;Parent=Msa1052160-mRNA-1 |
| chr7_2 | CDS | 20346331 | 20346402 | 20346331 | ID=Msa1052160-mRNA-1:cds;Parent=Msa1052160-mRNA-1 |
| chr7_2 | CDS | 20346484 | 20346585 | 20346484 | ID=Msa1052160-mRNA-1:cds;Parent=Msa1052160-mRNA-1 |
| chr7_2 | CDS | 20346668 | 20346735 | 20346668 | ID=Msa1052160-mRNA-1:cds;Parent=Msa1052160-mRNA-1 |
| chr7_2 | CDS | 20348133 | 20348236 | 20348133 | ID=Msa1052160-mRNA-1:cds;Parent=Msa1052160-mRNA-1 |
| chr7_2 | CDS | 20348545 | 20348582 | 20348545 | ID=Msa1052160-mRNA-1:cds;Parent=Msa1052160-mRNA-1 |
| chr7_2 | three_prime_UTR | 20348583 | 20348888 | 20348583 | ID=Msa1052160-mRNA-1:three_prime_utr;Parent=Msa1052160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
