Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1010650 | AES77932.1 | 93.902 | 82 | 5 | 0 | 46 | 127 | 137 | 218 | 1.83e-47 | 164 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1010650 | sp|Q9LRT1|Y3804_ARATH | 50.847 | 118 | 47 | 2 | 39 | 145 | 745 | 862 | 1.85e-27 | 110 |
| Msa1010650 | sp|Q9LRT1|Y3804_ARATH | 81.081 | 37 | 7 | 0 | 3 | 39 | 967 | 1003 | 1.09e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1010650 | G7KTW8 | 93.902 | 82 | 5 | 0 | 46 | 127 | 137 | 218 | 8.76e-48 | 164 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1010650 | Msa1052210 | 0.930450 | 1.609213e-93 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1010650 | MtrunA17_Chr7g0222251 | 66.667 | 108 | 24 | 2 | 49 | 145 | 70 | 176 | 1.06e-40 | 137 |
| Msa1010650 | MtrunA17_Chr7g0222321 | 69.444 | 108 | 21 | 2 | 49 | 145 | 758 | 864 | 1.02e-39 | 142 |
| Msa1010650 | MtrunA17_Chr7g0222321 | 78.431 | 51 | 7 | 1 | 1 | 47 | 966 | 1016 | 5.27e-17 | 77.0 |
| Msa1010650 | MtrunA17_Chr7g0222221 | 65.741 | 108 | 25 | 2 | 49 | 145 | 50 | 156 | 1.67e-39 | 135 |
| Msa1010650 | MtrunA17_Chr7g0222221 | 66.129 | 62 | 10 | 1 | 1 | 62 | 258 | 308 | 1.28e-16 | 75.1 |
| Msa1010650 | MtrunA17_Chr7g0222261 | 65.741 | 108 | 25 | 2 | 49 | 145 | 159 | 265 | 1.42e-38 | 135 |
| Msa1010650 | MtrunA17_Chr7g0222261 | 66.129 | 62 | 10 | 1 | 1 | 62 | 367 | 417 | 1.50e-16 | 75.5 |
| Msa1010650 | MtrunA17_Chr3g0128731 | 40.351 | 114 | 60 | 2 | 39 | 145 | 722 | 834 | 1.10e-16 | 76.3 |
| Msa1010650 | MtrunA17_Chr7g0244931 | 36.449 | 107 | 60 | 2 | 49 | 148 | 699 | 804 | 3.17e-13 | 66.2 |
| Msa1010650 | MtrunA17_Chr5g0398441 | 35.238 | 105 | 47 | 2 | 60 | 145 | 644 | 746 | 8.65e-13 | 65.1 |
| Msa1010650 | MtrunA17_Chr4g0012841 | 30.328 | 122 | 77 | 2 | 33 | 147 | 595 | 715 | 2.04e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1010650 | AT3G28040.1 | 50.847 | 118 | 47 | 2 | 39 | 145 | 745 | 862 | 1.88e-28 | 110 |
| Msa1010650 | AT3G28040.1 | 81.081 | 37 | 7 | 0 | 3 | 39 | 967 | 1003 | 1.11e-12 | 65.1 |
| Msa1010650 | AT3G56370.1 | 39.252 | 107 | 58 | 1 | 49 | 148 | 707 | 813 | 9.86e-16 | 73.9 |
| Msa1010650 | AT5G01890.1 | 32.787 | 122 | 69 | 2 | 33 | 145 | 700 | 817 | 5.16e-11 | 60.1 |
| Msa1010650 | AT3G24240.1 | 26.056 | 142 | 94 | 2 | 19 | 152 | 796 | 934 | 5.35e-11 | 60.1 |
Find 25 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATACTAAGATATCGGATTT+TGG | 0.118585 | 7_1:+13858004 | Msa1010650:CDS |
| GACACTGAAATTAGAATTCT+AGG | 0.251254 | 7_1:+13857747 | Msa1010650:CDS |
| ATTCACTACAACATTCATTT+AGG | 0.272885 | 7_1:+13857928 | Msa1010650:CDS |
| TTTATGTTGTAGTGAATTAT+TGG | 0.318270 | 7_1:-13857954 | None:intergenic |
| CAGCATTGAAAGATTACTAT+TGG | 0.329092 | 7_1:+13857793 | Msa1010650:CDS |
| TGCTGTTAAACTTTGGTGTC+TGG | 0.356672 | 7_1:-13857775 | None:intergenic |
| AAATTTCAATACTAAGATAT+CGG | 0.382438 | 7_1:+13857997 | Msa1010650:CDS |
| CTTTCAATGCTGTTAAACTT+TGG | 0.393817 | 7_1:-13857782 | None:intergenic |
| TCCATCTAGTAGGCCTACTA+TGG | 0.400528 | 7_1:+13856449 | Msa1010650:CDS |
| AGAAGTTGTGCAAATATTGC+AGG | 0.437280 | 7_1:+13856473 | Msa1010650:CDS |
| CAAGAAAGTGAAGGATTTGA+AGG | 0.442145 | 7_1:-13857891 | None:intergenic |
| GCCATAGTAGGCCTACTAGA+TGG | 0.451121 | 7_1:-13856450 | None:intergenic |
| TTGGATTGCAAGTTACCATC+TGG | 0.469269 | 7_1:-13857852 | None:intergenic |
| TGTTGTAGTGAATTATTGTT+TGG | 0.471500 | 7_1:-13857918 | None:intergenic |
| AACAAGTAAAACCTCATCCT+CGG | 0.483815 | 7_1:-13856394 | None:intergenic |
| TGCACAACTTCTGCCATAGT+AGG | 0.486137 | 7_1:-13856462 | None:intergenic |
| GTATCTGAATTTGCTCCAGA+TGG | 0.502843 | 7_1:+13857837 | Msa1010650:CDS |
| CATCTCAAATTCCATCTAGT+AGG | 0.515402 | 7_1:+13856439 | Msa1010650:CDS |
| ACAAGTAAAACCTCATCCTC+GGG | 0.521845 | 7_1:-13856393 | None:intergenic |
| ATGTTGTAGTGAATTATTGG+TGG | 0.528275 | 7_1:-13857951 | None:intergenic |
| GAACGAATATCCCGAGGATG+AGG | 0.539365 | 7_1:+13856383 | Msa1010650:CDS |
| GATACTAAAAGTTGTAGCTG+TGG | 0.614514 | 7_1:-13857819 | None:intergenic |
| TATTTATTCCTAGTTAGGAG+AGG | 0.616518 | 7_1:+13856878 | Msa1010650:intron |
| TTTGGTGTGCAAGAAAGTGA+AGG | 0.616965 | 7_1:-13857900 | None:intergenic |
| TTTGATGAACGAATATCCCG+AGG | 0.702097 | 7_1:+13856377 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACAAAATTATAGTTAAAA+AGG | - | chr7_1:13856771-13856790 | None:intergenic | 10.0% |
| !! | TATAAAATATAATTCAATTG+AGG | + | chr7_1:13857122-13857141 | Msa1010650:intron | 10.0% |
| !! | ATAAAATATAATTCAATTGA+GGG | + | chr7_1:13857123-13857142 | Msa1010650:intron | 10.0% |
| !! | TTATAAATCATAATAATAAG+AGG | - | chr7_1:13857343-13857362 | None:intergenic | 10.0% |
| !! | AAACAAAATTATAGTTAAAA+AGG | - | chr7_1:13856771-13856790 | None:intergenic | 10.0% |
| !! | TATAAAATATAATTCAATTG+AGG | + | chr7_1:13857122-13857141 | Msa1010650:intron | 10.0% |
| !! | ATAAAATATAATTCAATTGA+GGG | + | chr7_1:13857123-13857142 | Msa1010650:intron | 10.0% |
| !! | TTATAAATCATAATAATAAG+AGG | - | chr7_1:13857343-13857362 | None:intergenic | 10.0% |
| !!! | TAACTATAATTTTGTTTATG+TGG | + | chr7_1:13856774-13856793 | Msa1010650:intron | 15.0% |
| !! | AATTGATGTTATAGATAAAA+GGG | - | chr7_1:13856846-13856865 | None:intergenic | 15.0% |
| !! | AAATTGATGTTATAGATAAA+AGG | - | chr7_1:13856847-13856866 | None:intergenic | 15.0% |
| !!! | CTAGTAATTTGTTAAAAAAA+AGG | + | chr7_1:13856940-13856959 | Msa1010650:intron | 15.0% |
| !! | TTGTAAACAAAACAAAATTT+GGG | + | chr7_1:13857003-13857022 | Msa1010650:intron | 15.0% |
| !! | CTATAAAACCATAATATATT+TGG | - | chr7_1:13857195-13857214 | None:intergenic | 15.0% |
| !! | AATAAAAATAAGGAGTAATA+TGG | + | chr7_1:13857589-13857608 | Msa1010650:intron | 15.0% |
| !! | AAATTTCAATACTAAGATAT+CGG | + | chr7_1:13857997-13858016 | Msa1010650:CDS | 15.0% |
| !!! | TAACTATAATTTTGTTTATG+TGG | + | chr7_1:13856774-13856793 | Msa1010650:intron | 15.0% |
| !! | AATTGATGTTATAGATAAAA+GGG | - | chr7_1:13856846-13856865 | None:intergenic | 15.0% |
| !! | AAATTGATGTTATAGATAAA+AGG | - | chr7_1:13856847-13856866 | None:intergenic | 15.0% |
| !!! | CTAGTAATTTGTTAAAAAAA+AGG | + | chr7_1:13856940-13856959 | Msa1010650:intron | 15.0% |
| !! | TTGTAAACAAAACAAAATTT+GGG | + | chr7_1:13857003-13857022 | Msa1010650:intron | 15.0% |
| !! | CTATAAAACCATAATATATT+TGG | - | chr7_1:13857195-13857214 | None:intergenic | 15.0% |
| !! | AATAAAAATAAGGAGTAATA+TGG | + | chr7_1:13857589-13857608 | Msa1010650:intron | 15.0% |
| !! | AAATTTCAATACTAAGATAT+CGG | + | chr7_1:13857997-13858016 | Msa1010650:CDS | 15.0% |
| !!! | TTTAACAAATTACTAGTTTG+AGG | - | chr7_1:13856936-13856955 | None:intergenic | 20.0% |
| !! | GTTGTAAACAAAACAAAATT+TGG | + | chr7_1:13857002-13857021 | Msa1010650:intron | 20.0% |
| !! | AAAATAGGCCAAATATATTA+TGG | + | chr7_1:13857184-13857203 | Msa1010650:intron | 20.0% |
| !!! | AACATTTTGATTTTTCTGAA+GGG | + | chr7_1:13857297-13857316 | Msa1010650:intron | 20.0% |
| !! | ATATGATGTTAGAATTAGAA+AGG | - | chr7_1:13857366-13857385 | None:intergenic | 20.0% |
| !! | TACTATCACTCTAATTATAT+TGG | - | chr7_1:13857570-13857589 | None:intergenic | 20.0% |
| !! | GAGTGATAGTAATAAAAATA+AGG | + | chr7_1:13857579-13857598 | Msa1010650:intron | 20.0% |
| !!! | ATAACATATTGGCTATTTTT+GGG | - | chr7_1:13857647-13857666 | None:intergenic | 20.0% |
| !!! | ACTTTTAACACATAACATAT+TGG | - | chr7_1:13857658-13857677 | None:intergenic | 20.0% |
| !! | TTTATGTTGTAGTGAATTAT+TGG | - | chr7_1:13857957-13857976 | None:intergenic | 20.0% |
| !!! | ATTTTCATCAAGATATTGTT+TGG | - | chr7_1:13857981-13858000 | None:intergenic | 20.0% |
| !!! | TTTAACAAATTACTAGTTTG+AGG | - | chr7_1:13856936-13856955 | None:intergenic | 20.0% |
| !! | GTTGTAAACAAAACAAAATT+TGG | + | chr7_1:13857002-13857021 | Msa1010650:intron | 20.0% |
| !! | AAAATAGGCCAAATATATTA+TGG | + | chr7_1:13857184-13857203 | Msa1010650:intron | 20.0% |
| !!! | AACATTTTGATTTTTCTGAA+GGG | + | chr7_1:13857297-13857316 | Msa1010650:intron | 20.0% |
| !! | ATATGATGTTAGAATTAGAA+AGG | - | chr7_1:13857366-13857385 | None:intergenic | 20.0% |
| !! | TACTATCACTCTAATTATAT+TGG | - | chr7_1:13857570-13857589 | None:intergenic | 20.0% |
| !! | GAGTGATAGTAATAAAAATA+AGG | + | chr7_1:13857579-13857598 | Msa1010650:intron | 20.0% |
| !!! | ATAACATATTGGCTATTTTT+GGG | - | chr7_1:13857647-13857666 | None:intergenic | 20.0% |
| !!! | ACTTTTAACACATAACATAT+TGG | - | chr7_1:13857658-13857677 | None:intergenic | 20.0% |
| !! | TTTATGTTGTAGTGAATTAT+TGG | - | chr7_1:13857957-13857976 | None:intergenic | 20.0% |
| !!! | ATTTTCATCAAGATATTGTT+TGG | - | chr7_1:13857981-13858000 | None:intergenic | 20.0% |
| !!! | ATATGTTTAGCTATTTTCAG+TGG | + | chr7_1:13856553-13856572 | Msa1010650:intron | 25.0% |
| !!! | TTTTCAGTGGTTTTAATTTG+CGG | + | chr7_1:13856566-13856585 | Msa1010650:intron | 25.0% |
| !! | ATCTTAAAAACTGTTACTTG+TGG | + | chr7_1:13856671-13856690 | Msa1010650:intron | 25.0% |
| ! | AAAAAGGATACACAATATGA+AGG | - | chr7_1:13856755-13856774 | None:intergenic | 25.0% |
| ! | TTATAGATAAAAGGGAAACT+CGG | - | chr7_1:13856838-13856857 | None:intergenic | 25.0% |
| !! | CACTCTTGTTTATTTATATC+AGG | - | chr7_1:13856983-13857002 | None:intergenic | 25.0% |
| !!! | CAACATTTTGATTTTTCTGA+AGG | + | chr7_1:13857296-13857315 | Msa1010650:intron | 25.0% |
| ! | TATCACTCTAATTATATTGG+AGG | - | chr7_1:13857567-13857586 | None:intergenic | 25.0% |
| !!! | CATAACATATTGGCTATTTT+TGG | - | chr7_1:13857648-13857667 | None:intergenic | 25.0% |
| ! | TGTTGTAGTGAATTATTGTT+TGG | - | chr7_1:13857921-13857940 | None:intergenic | 25.0% |
| ! | ATTCACTACAACATTCATTT+AGG | + | chr7_1:13857928-13857947 | Msa1010650:CDS | 25.0% |
| !! | AATACTAAGATATCGGATTT+TGG | + | chr7_1:13858004-13858023 | Msa1010650:CDS | 25.0% |
| !! | ATACTAAGATATCGGATTTT+GGG | + | chr7_1:13858005-13858024 | Msa1010650:CDS | 25.0% |
| !!! | ATATGTTTAGCTATTTTCAG+TGG | + | chr7_1:13856553-13856572 | Msa1010650:intron | 25.0% |
| !!! | TTTTCAGTGGTTTTAATTTG+CGG | + | chr7_1:13856566-13856585 | Msa1010650:intron | 25.0% |
| !! | ATCTTAAAAACTGTTACTTG+TGG | + | chr7_1:13856671-13856690 | Msa1010650:intron | 25.0% |
| ! | AAAAAGGATACACAATATGA+AGG | - | chr7_1:13856755-13856774 | None:intergenic | 25.0% |
| ! | TTATAGATAAAAGGGAAACT+CGG | - | chr7_1:13856838-13856857 | None:intergenic | 25.0% |
| !! | CACTCTTGTTTATTTATATC+AGG | - | chr7_1:13856983-13857002 | None:intergenic | 25.0% |
| !!! | CAACATTTTGATTTTTCTGA+AGG | + | chr7_1:13857296-13857315 | Msa1010650:intron | 25.0% |
| ! | TATCACTCTAATTATATTGG+AGG | - | chr7_1:13857567-13857586 | None:intergenic | 25.0% |
| !!! | CATAACATATTGGCTATTTT+TGG | - | chr7_1:13857648-13857667 | None:intergenic | 25.0% |
| ! | TGTTGTAGTGAATTATTGTT+TGG | - | chr7_1:13857921-13857940 | None:intergenic | 25.0% |
| ! | ATTCACTACAACATTCATTT+AGG | + | chr7_1:13857928-13857947 | Msa1010650:CDS | 25.0% |
| !! | AATACTAAGATATCGGATTT+TGG | + | chr7_1:13858004-13858023 | Msa1010650:CDS | 25.0% |
| !! | ATACTAAGATATCGGATTTT+GGG | + | chr7_1:13858005-13858024 | Msa1010650:CDS | 25.0% |
| TGACAACATAACTACAATTG+TGG | - | chr7_1:13856643-13856662 | None:intergenic | 30.0% | |
| GAGTGTATTTATTCCTAGTT+AGG | + | chr7_1:13856873-13856892 | Msa1010650:intron | 30.0% | |
| TATTTATTCCTAGTTAGGAG+AGG | + | chr7_1:13856878-13856897 | Msa1010650:intron | 30.0% | |
| ! | TGTAAAACAAACTTTGAGAG+AGG | + | chr7_1:13857069-13857088 | Msa1010650:intron | 30.0% |
| AGTTGCTTAGATTACTTCAA+TGG | + | chr7_1:13857156-13857175 | Msa1010650:intron | 30.0% | |
| GTTGCTTAGATTACTTCAAT+GGG | + | chr7_1:13857157-13857176 | Msa1010650:intron | 30.0% | |
| TTGCTTAGATTACTTCAATG+GGG | + | chr7_1:13857158-13857177 | Msa1010650:intron | 30.0% | |
| ATGATCTTCAACATACATGT+AGG | - | chr7_1:13857234-13857253 | None:intergenic | 30.0% | |
| TTCATTCTAACATACCATCT+TGG | - | chr7_1:13857499-13857518 | None:intergenic | 30.0% | |
| GACACTGAAATTAGAATTCT+AGG | + | chr7_1:13857747-13857766 | Msa1010650:CDS | 30.0% | |
| CTTTCAATGCTGTTAAACTT+TGG | - | chr7_1:13857785-13857804 | None:intergenic | 30.0% | |
| ! | CAGCATTGAAAGATTACTAT+TGG | + | chr7_1:13857793-13857812 | Msa1010650:CDS | 30.0% |
| ATGTTGTAGTGAATTATTGG+TGG | - | chr7_1:13857954-13857973 | None:intergenic | 30.0% | |
| TGACAACATAACTACAATTG+TGG | - | chr7_1:13856643-13856662 | None:intergenic | 30.0% | |
| GAGTGTATTTATTCCTAGTT+AGG | + | chr7_1:13856873-13856892 | Msa1010650:intron | 30.0% | |
| TATTTATTCCTAGTTAGGAG+AGG | + | chr7_1:13856878-13856897 | Msa1010650:intron | 30.0% | |
| ! | TGTAAAACAAACTTTGAGAG+AGG | + | chr7_1:13857069-13857088 | Msa1010650:intron | 30.0% |
| AGTTGCTTAGATTACTTCAA+TGG | + | chr7_1:13857156-13857175 | Msa1010650:intron | 30.0% | |
| GTTGCTTAGATTACTTCAAT+GGG | + | chr7_1:13857157-13857176 | Msa1010650:intron | 30.0% | |
| TTGCTTAGATTACTTCAATG+GGG | + | chr7_1:13857158-13857177 | Msa1010650:intron | 30.0% | |
| ATGATCTTCAACATACATGT+AGG | - | chr7_1:13857234-13857253 | None:intergenic | 30.0% | |
| TTCATTCTAACATACCATCT+TGG | - | chr7_1:13857499-13857518 | None:intergenic | 30.0% | |
| GACACTGAAATTAGAATTCT+AGG | + | chr7_1:13857747-13857766 | Msa1010650:CDS | 30.0% | |
| CTTTCAATGCTGTTAAACTT+TGG | - | chr7_1:13857785-13857804 | None:intergenic | 30.0% | |
| ! | CAGCATTGAAAGATTACTAT+TGG | + | chr7_1:13857793-13857812 | Msa1010650:CDS | 30.0% |
| ATGTTGTAGTGAATTATTGG+TGG | - | chr7_1:13857954-13857973 | None:intergenic | 30.0% | |
| AACAAGTAAAACCTCATCCT+CGG | - | chr7_1:13856397-13856416 | None:intergenic | 35.0% | |
| !!! | GGTTTTACTTGTTTTGAAGC+TGG | + | chr7_1:13856404-13856423 | Msa1010650:CDS | 35.0% |
| CATCTCAAATTCCATCTAGT+AGG | + | chr7_1:13856439-13856458 | Msa1010650:CDS | 35.0% | |
| AGAAGTTGTGCAAATATTGC+AGG | + | chr7_1:13856473-13856492 | Msa1010650:CDS | 35.0% | |
| TTAAAACTCCTGTTCCTCAA+AGG | + | chr7_1:13856499-13856518 | Msa1010650:intron | 35.0% | |
| CAAAATACTTCCATCCTTTG+AGG | - | chr7_1:13856516-13856535 | None:intergenic | 35.0% | |
| ! | TGTGTTTCTCAGAAGTACAA+AGG | - | chr7_1:13856610-13856629 | None:intergenic | 35.0% |
| ACAAAACAAAATTTGGGTGC+AGG | + | chr7_1:13857009-13857028 | Msa1010650:intron | 35.0% | |
| ! | AAAACAAACTTTGAGAGAGG+TGG | + | chr7_1:13857072-13857091 | Msa1010650:intron | 35.0% |
| ACTTCAATGGGGCTAAAAAT+AGG | + | chr7_1:13857169-13857188 | Msa1010650:intron | 35.0% | |
| AAAATGCTGATCATTCCTAG+AGG | - | chr7_1:13857460-13857479 | None:intergenic | 35.0% | |
| ATTCTAACATACCATCTTGG+TGG | - | chr7_1:13857496-13857515 | None:intergenic | 35.0% | |
| TATGTTAGAATGAAGCTTCG+TGG | + | chr7_1:13857505-13857524 | Msa1010650:intron | 35.0% | |
| GATACTAAAAGTTGTAGCTG+TGG | - | chr7_1:13857822-13857841 | None:intergenic | 35.0% | |
| ! | AGGAAGCTTTTCATGTAACT+TGG | - | chr7_1:13857874-13857893 | None:intergenic | 35.0% |
| CAAGAAAGTGAAGGATTTGA+AGG | - | chr7_1:13857894-13857913 | None:intergenic | 35.0% | |
| AACAAGTAAAACCTCATCCT+CGG | - | chr7_1:13856397-13856416 | None:intergenic | 35.0% | |
| !!! | GGTTTTACTTGTTTTGAAGC+TGG | + | chr7_1:13856404-13856423 | Msa1010650:CDS | 35.0% |
| CATCTCAAATTCCATCTAGT+AGG | + | chr7_1:13856439-13856458 | Msa1010650:CDS | 35.0% | |
| AGAAGTTGTGCAAATATTGC+AGG | + | chr7_1:13856473-13856492 | Msa1010650:CDS | 35.0% | |
| TTAAAACTCCTGTTCCTCAA+AGG | + | chr7_1:13856499-13856518 | Msa1010650:intron | 35.0% | |
| CAAAATACTTCCATCCTTTG+AGG | - | chr7_1:13856516-13856535 | None:intergenic | 35.0% | |
| ! | TGTGTTTCTCAGAAGTACAA+AGG | - | chr7_1:13856610-13856629 | None:intergenic | 35.0% |
| ACAAAACAAAATTTGGGTGC+AGG | + | chr7_1:13857009-13857028 | Msa1010650:intron | 35.0% | |
| ! | AAAACAAACTTTGAGAGAGG+TGG | + | chr7_1:13857072-13857091 | Msa1010650:intron | 35.0% |
| ACTTCAATGGGGCTAAAAAT+AGG | + | chr7_1:13857169-13857188 | Msa1010650:intron | 35.0% | |
| AAAATGCTGATCATTCCTAG+AGG | - | chr7_1:13857460-13857479 | None:intergenic | 35.0% | |
| ATTCTAACATACCATCTTGG+TGG | - | chr7_1:13857496-13857515 | None:intergenic | 35.0% | |
| TATGTTAGAATGAAGCTTCG+TGG | + | chr7_1:13857505-13857524 | Msa1010650:intron | 35.0% | |
| GATACTAAAAGTTGTAGCTG+TGG | - | chr7_1:13857822-13857841 | None:intergenic | 35.0% | |
| ! | AGGAAGCTTTTCATGTAACT+TGG | - | chr7_1:13857874-13857893 | None:intergenic | 35.0% |
| CAAGAAAGTGAAGGATTTGA+AGG | - | chr7_1:13857894-13857913 | None:intergenic | 35.0% | |
| ACAAGTAAAACCTCATCCTC+GGG | - | chr7_1:13856396-13856415 | None:intergenic | 40.0% | |
| !!! | ACTTGTTTTGAAGCTGGCTA+TGG | + | chr7_1:13856410-13856429 | Msa1010650:CDS | 40.0% |
| ! | TATTCCTTTTCGAAGCGCAT+TGG | - | chr7_1:13856913-13856932 | None:intergenic | 40.0% |
| !! | TTTTTCTGAAGGGTGAGACT+CGG | + | chr7_1:13857307-13857326 | Msa1010650:intron | 40.0% |
| GTTCTGCTAAAAATGCCTCT+AGG | + | chr7_1:13857442-13857461 | Msa1010650:intron | 40.0% | |
| AAATCCCATAACCACCAAGA+TGG | + | chr7_1:13857482-13857501 | Msa1010650:intron | 40.0% | |
| ! | CATACCATCTTGGTGGTTAT+GGG | - | chr7_1:13857489-13857508 | None:intergenic | 40.0% |
| ! | ACATACCATCTTGGTGGTTA+TGG | - | chr7_1:13857490-13857509 | None:intergenic | 40.0% |
| GGTTGAACAGACTCTTGAAA+AGG | - | chr7_1:13857546-13857565 | None:intergenic | 40.0% | |
| !! | TGCTGTTAAACTTTGGTGTC+TGG | - | chr7_1:13857778-13857797 | None:intergenic | 40.0% |
| ! | GTATCTGAATTTGCTCCAGA+TGG | + | chr7_1:13857837-13857856 | Msa1010650:CDS | 40.0% |
| TTGGATTGCAAGTTACCATC+TGG | - | chr7_1:13857855-13857874 | None:intergenic | 40.0% | |
| ! | TTTGGTGTGCAAGAAAGTGA+AGG | - | chr7_1:13857903-13857922 | None:intergenic | 40.0% |
| ACAAGTAAAACCTCATCCTC+GGG | - | chr7_1:13856396-13856415 | None:intergenic | 40.0% | |
| !!! | ACTTGTTTTGAAGCTGGCTA+TGG | + | chr7_1:13856410-13856429 | Msa1010650:CDS | 40.0% |
| ! | TATTCCTTTTCGAAGCGCAT+TGG | - | chr7_1:13856913-13856932 | None:intergenic | 40.0% |
| !! | TTTTTCTGAAGGGTGAGACT+CGG | + | chr7_1:13857307-13857326 | Msa1010650:intron | 40.0% |
| GTTCTGCTAAAAATGCCTCT+AGG | + | chr7_1:13857442-13857461 | Msa1010650:intron | 40.0% | |
| AAATCCCATAACCACCAAGA+TGG | + | chr7_1:13857482-13857501 | Msa1010650:intron | 40.0% | |
| ! | CATACCATCTTGGTGGTTAT+GGG | - | chr7_1:13857489-13857508 | None:intergenic | 40.0% |
| ! | ACATACCATCTTGGTGGTTA+TGG | - | chr7_1:13857490-13857509 | None:intergenic | 40.0% |
| GGTTGAACAGACTCTTGAAA+AGG | - | chr7_1:13857546-13857565 | None:intergenic | 40.0% | |
| !! | TGCTGTTAAACTTTGGTGTC+TGG | - | chr7_1:13857778-13857797 | None:intergenic | 40.0% |
| ! | GTATCTGAATTTGCTCCAGA+TGG | + | chr7_1:13857837-13857856 | Msa1010650:CDS | 40.0% |
| TTGGATTGCAAGTTACCATC+TGG | - | chr7_1:13857855-13857874 | None:intergenic | 40.0% | |
| ! | TTTGGTGTGCAAGAAAGTGA+AGG | - | chr7_1:13857903-13857922 | None:intergenic | 40.0% |
| TCCATCTAGTAGGCCTACTA+TGG | + | chr7_1:13856449-13856468 | Msa1010650:CDS | 45.0% | |
| TGCACAACTTCTGCCATAGT+AGG | - | chr7_1:13856465-13856484 | None:intergenic | 45.0% | |
| AACTCCTGTTCCTCAAAGGA+TGG | + | chr7_1:13856503-13856522 | Msa1010650:intron | 45.0% | |
| ! | ACTTCCATCCTTTGAGGAAC+AGG | - | chr7_1:13856510-13856529 | None:intergenic | 45.0% |
| TGTGGATACCTCTCCTAACT+AGG | - | chr7_1:13856889-13856908 | None:intergenic | 45.0% | |
| ! | TTTTCGAAGCGCATTGGATG+TGG | - | chr7_1:13856907-13856926 | None:intergenic | 45.0% |
| ACATCCAATGCGCTTCGAAA+AGG | + | chr7_1:13856906-13856925 | Msa1010650:intron | 45.0% | |
| GGGTGCAGGACTAACTAAAA+CGG | + | chr7_1:13857023-13857042 | Msa1010650:intron | 45.0% | |
| TCCATCTAGTAGGCCTACTA+TGG | + | chr7_1:13856449-13856468 | Msa1010650:CDS | 45.0% | |
| TGCACAACTTCTGCCATAGT+AGG | - | chr7_1:13856465-13856484 | None:intergenic | 45.0% | |
| AACTCCTGTTCCTCAAAGGA+TGG | + | chr7_1:13856503-13856522 | Msa1010650:intron | 45.0% | |
| ! | ACTTCCATCCTTTGAGGAAC+AGG | - | chr7_1:13856510-13856529 | None:intergenic | 45.0% |
| TGTGGATACCTCTCCTAACT+AGG | - | chr7_1:13856889-13856908 | None:intergenic | 45.0% | |
| ! | TTTTCGAAGCGCATTGGATG+TGG | - | chr7_1:13856907-13856926 | None:intergenic | 45.0% |
| ACATCCAATGCGCTTCGAAA+AGG | + | chr7_1:13856906-13856925 | Msa1010650:intron | 45.0% | |
| GGGTGCAGGACTAACTAAAA+CGG | + | chr7_1:13857023-13857042 | Msa1010650:intron | 45.0% | |
| !!! | AATTGAATTATATTTTATAT+AGG | - | chr7_1:13857121-13857140 | None:intergenic | 5.0% |
| !!! | AATTGAATTATATTTTATAT+AGG | - | chr7_1:13857121-13857140 | None:intergenic | 5.0% |
| GAACGAATATCCCGAGGATG+AGG | + | chr7_1:13856383-13856402 | Msa1010650:CDS | 50.0% | |
| GCCATAGTAGGCCTACTAGA+TGG | - | chr7_1:13856453-13856472 | None:intergenic | 50.0% | |
| GAAGCTTCGTGGTGTTTGCT+TGG | + | chr7_1:13857516-13857535 | Msa1010650:intron | 50.0% | |
| GAACGAATATCCCGAGGATG+AGG | + | chr7_1:13856383-13856402 | Msa1010650:CDS | 50.0% | |
| GCCATAGTAGGCCTACTAGA+TGG | - | chr7_1:13856453-13856472 | None:intergenic | 50.0% | |
| GAAGCTTCGTGGTGTTTGCT+TGG | + | chr7_1:13857516-13857535 | Msa1010650:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 13856381 | 13858031 | 13856381 | ID=Msa1010650;Name=Msa1010650 |
| chr7_1 | mRNA | 13856381 | 13858031 | 13856381 | ID=Msa1010650-mRNA-1;Parent=Msa1010650;Name=Msa1010650-mRNA-1;_AED=0.44;_eAED=0.44;_QI=0|0|0|0.66|0|0|3|0|156 |
| chr7_1 | exon | 13856381 | 13856494 | 13856381 | ID=Msa1010650-mRNA-1:exon:3587;Parent=Msa1010650-mRNA-1 |
| chr7_1 | exon | 13856891 | 13856899 | 13856891 | ID=Msa1010650-mRNA-1:exon:3588;Parent=Msa1010650-mRNA-1 |
| chr7_1 | exon | 13857684 | 13858031 | 13857684 | ID=Msa1010650-mRNA-1:exon:3589;Parent=Msa1010650-mRNA-1 |
| chr7_1 | CDS | 13856381 | 13856494 | 13856381 | ID=Msa1010650-mRNA-1:cds;Parent=Msa1010650-mRNA-1 |
| chr7_1 | CDS | 13856891 | 13856899 | 13856891 | ID=Msa1010650-mRNA-1:cds;Parent=Msa1010650-mRNA-1 |
| chr7_1 | CDS | 13857684 | 13858031 | 13857684 | ID=Msa1010650-mRNA-1:cds;Parent=Msa1010650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
