Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1052210 | AES77932.1 | 93.220 | 59 | 4 | 0 | 79 | 137 | 138 | 196 | 2.18e-29 | 117 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1052210 | sp|Q9LRT1|Y3804_ARATH | 64.912 | 57 | 20 | 0 | 81 | 137 | 756 | 812 | 3.39e-17 | 80.1 |
| Msa1052210 | sp|Q9LRT1|Y3804_ARATH | 81.081 | 37 | 7 | 0 | 3 | 39 | 967 | 1003 | 5.00e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1052210 | G7KTW8 | 93.220 | 59 | 4 | 0 | 79 | 137 | 138 | 196 | 1.04e-29 | 117 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1010650 | Msa1052210 | 0.930450 | 1.609213e-93 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1052210 | MtrunA17_Chr7g0222251 | 80.702 | 57 | 11 | 0 | 81 | 137 | 70 | 126 | 5.74e-27 | 100 |
| Msa1052210 | MtrunA17_Chr7g0222321 | 84.211 | 57 | 9 | 0 | 81 | 137 | 758 | 814 | 1.64e-26 | 103 |
| Msa1052210 | MtrunA17_Chr7g0222321 | 94.872 | 39 | 2 | 0 | 1 | 39 | 966 | 1004 | 2.63e-17 | 77.0 |
| Msa1052210 | MtrunA17_Chr7g0222221 | 75.439 | 57 | 14 | 0 | 81 | 137 | 50 | 106 | 8.61e-23 | 90.9 |
| Msa1052210 | MtrunA17_Chr7g0222221 | 84.091 | 44 | 7 | 0 | 1 | 44 | 258 | 301 | 7.88e-17 | 74.7 |
| Msa1052210 | MtrunA17_Chr7g0222261 | 75.439 | 57 | 14 | 0 | 81 | 137 | 159 | 215 | 2.83e-22 | 90.9 |
| Msa1052210 | MtrunA17_Chr7g0222261 | 84.091 | 44 | 7 | 0 | 1 | 44 | 367 | 410 | 1.59e-16 | 74.7 |
| Msa1052210 | MtrunA17_Chr3g0128731 | 50.000 | 54 | 27 | 0 | 81 | 134 | 732 | 785 | 2.39e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1052210 | AT3G28040.1 | 64.912 | 57 | 20 | 0 | 81 | 137 | 756 | 812 | 3.45e-18 | 80.1 |
| Msa1052210 | AT3G28040.1 | 81.081 | 37 | 7 | 0 | 3 | 39 | 967 | 1003 | 5.08e-13 | 65.5 |
Find 28 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATACCATCTTGGTGGTTA+TGG | 0.257027 | 7_2:-20375159 | None:intergenic |
| GACACTGAAGTTAGAATTCT+AGG | 0.300273 | 7_2:+20375419 | Msa1052210:CDS |
| CATACCATCTTGGTGGTTAT+GGG | 0.303265 | 7_2:-20375158 | None:intergenic |
| ACTTCAGTGTCGAAGACTTC+TGG | 0.306524 | 7_2:-20375407 | None:intergenic |
| CAACATTGAAAGGTTACTAT+TGG | 0.314621 | 7_2:+20375465 | Msa1052210:CDS |
| TGTTCTATGTTGCAGTTTGC+GGG | 0.347602 | 7_2:+20374684 | Msa1052210:intron |
| TGTTGTCAAACTTTGGTGTC+TGG | 0.373815 | 7_2:-20375447 | None:intergenic |
| TTGGATTGCAAGTTACCATT+TGG | 0.377622 | 7_2:-20375524 | None:intergenic |
| CTTTCAATGTTGTCAAACTT+TGG | 0.391854 | 7_2:-20375454 | None:intergenic |
| GTATCTGAATTTGCTCCAAA+TGG | 0.400468 | 7_2:+20375509 | Msa1052210:CDS |
| TCCATCTAGTAGGCCTACTA+TGG | 0.400528 | 7_2:+20374071 | Msa1052210:CDS |
| TTTAACAAATTACTAGTTTG+AGG | 0.414138 | 7_2:-20374555 | None:intergenic |
| AGAAGTTGTGCAAATATTGC+AGG | 0.437280 | 7_2:+20374095 | Msa1052210:CDS |
| TTCATTCTAACATACCATCT+TGG | 0.445408 | 7_2:-20375168 | None:intergenic |
| GCCATAGTAGGCCTACTAGA+TGG | 0.451121 | 7_2:-20374072 | None:intergenic |
| AACAAGTAAAACCTCATCCT+CGG | 0.483815 | 7_2:-20374016 | None:intergenic |
| ACATCCAATGCGCTTCGAAA+AGG | 0.485874 | 7_2:+20374528 | Msa1052210:CDS |
| TGCACAACTTCTGCCATAGT+AGG | 0.486137 | 7_2:-20374084 | None:intergenic |
| CATCTCAAATTCCATCTAGT+AGG | 0.515402 | 7_2:+20374061 | Msa1052210:CDS |
| ACAAGTAAAACCTCATCCTC+GGG | 0.521845 | 7_2:-20374015 | None:intergenic |
| ATTCTAACATACCATCTTGG+TGG | 0.522236 | 7_2:-20375165 | None:intergenic |
| CAAAGTTTGACAACATTGAA+AGG | 0.522563 | 7_2:+20375455 | Msa1052210:CDS |
| GAACGAATATCCCGAGGATG+AGG | 0.539365 | 7_2:+20374005 | Msa1052210:CDS |
| GATACTAAAAGTTGTAGTTG+TGG | 0.599697 | 7_2:-20375491 | None:intergenic |
| AAATCCCATAACCACCAAGA+TGG | 0.603874 | 7_2:+20375154 | Msa1052210:CDS |
| TATTTATTCCTAGTTAGGAG+AGG | 0.616518 | 7_2:+20374500 | Msa1052210:intron |
| TTTGATGAACGAATATCCCG+AGG | 0.702097 | 7_2:+20373999 | None:intergenic |
| AAAATGCTGATCATTCCTAG+AGG | 0.744742 | 7_2:-20375129 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACAAAATTATAGTTAAAA+AGG | - | chr7_2:20374393-20374412 | None:intergenic | 10.0% |
| !! | TATAAAATATAATTCAATTG+AGG | + | chr7_2:20374794-20374813 | Msa1052210:intron | 10.0% |
| !! | ATAAAATATAATTCAATTGA+GGG | + | chr7_2:20374795-20374814 | Msa1052210:intron | 10.0% |
| !! | TTATAAATCATAATAATAAG+AGG | - | chr7_2:20375015-20375034 | None:intergenic | 10.0% |
| !! | AAACAAAATTATAGTTAAAA+AGG | - | chr7_2:20374393-20374412 | None:intergenic | 10.0% |
| !! | TATAAAATATAATTCAATTG+AGG | + | chr7_2:20374794-20374813 | Msa1052210:intron | 10.0% |
| !! | ATAAAATATAATTCAATTGA+GGG | + | chr7_2:20374795-20374814 | Msa1052210:intron | 10.0% |
| !! | TTATAAATCATAATAATAAG+AGG | - | chr7_2:20375015-20375034 | None:intergenic | 10.0% |
| !!! | TAACTATAATTTTGTTTATG+TGG | + | chr7_2:20374396-20374415 | Msa1052210:intron | 15.0% |
| !! | AATTGATGTTATAGATAAAA+GGG | - | chr7_2:20374468-20374487 | None:intergenic | 15.0% |
| !! | AAATTGATGTTATAGATAAA+AGG | - | chr7_2:20374469-20374488 | None:intergenic | 15.0% |
| !!! | CTAGTAATTTGTTAAAAAAA+AGG | + | chr7_2:20374562-20374581 | Msa1052210:intron | 15.0% |
| !! | TTGTAAACAAAACAAAATTT+GGG | + | chr7_2:20374625-20374644 | Msa1052210:intron | 15.0% |
| !! | CTATAAAACCATAATATATT+TGG | - | chr7_2:20374867-20374886 | None:intergenic | 15.0% |
| !! | AATAAAAATAAGGAGTAATA+TGG | + | chr7_2:20375261-20375280 | Msa1052210:intron | 15.0% |
| !!! | TAACTATAATTTTGTTTATG+TGG | + | chr7_2:20374396-20374415 | Msa1052210:intron | 15.0% |
| !! | AATTGATGTTATAGATAAAA+GGG | - | chr7_2:20374468-20374487 | None:intergenic | 15.0% |
| !! | AAATTGATGTTATAGATAAA+AGG | - | chr7_2:20374469-20374488 | None:intergenic | 15.0% |
| !!! | CTAGTAATTTGTTAAAAAAA+AGG | + | chr7_2:20374562-20374581 | Msa1052210:intron | 15.0% |
| !! | TTGTAAACAAAACAAAATTT+GGG | + | chr7_2:20374625-20374644 | Msa1052210:intron | 15.0% |
| !! | CTATAAAACCATAATATATT+TGG | - | chr7_2:20374867-20374886 | None:intergenic | 15.0% |
| !! | AATAAAAATAAGGAGTAATA+TGG | + | chr7_2:20375261-20375280 | Msa1052210:intron | 15.0% |
| !!! | TTTAACAAATTACTAGTTTG+AGG | - | chr7_2:20374558-20374577 | None:intergenic | 20.0% |
| !! | GTTGTAAACAAAACAAAATT+TGG | + | chr7_2:20374624-20374643 | Msa1052210:intron | 20.0% |
| !! | AAAATAGGCCAAATATATTA+TGG | + | chr7_2:20374856-20374875 | Msa1052210:intron | 20.0% |
| !!! | AACATTTTGATTTTTCTGAA+GGG | + | chr7_2:20374969-20374988 | Msa1052210:intron | 20.0% |
| !! | ATATGATGTTAGAATTAGAA+AGG | - | chr7_2:20375038-20375057 | None:intergenic | 20.0% |
| !! | TACTATCACTCTAATTATAT+TGG | - | chr7_2:20375242-20375261 | None:intergenic | 20.0% |
| !! | GAGTGATAGTAATAAAAATA+AGG | + | chr7_2:20375251-20375270 | Msa1052210:intron | 20.0% |
| !!! | TTTAACAAATTACTAGTTTG+AGG | - | chr7_2:20374558-20374577 | None:intergenic | 20.0% |
| !! | GTTGTAAACAAAACAAAATT+TGG | + | chr7_2:20374624-20374643 | Msa1052210:intron | 20.0% |
| !! | AAAATAGGCCAAATATATTA+TGG | + | chr7_2:20374856-20374875 | Msa1052210:intron | 20.0% |
| !!! | AACATTTTGATTTTTCTGAA+GGG | + | chr7_2:20374969-20374988 | Msa1052210:intron | 20.0% |
| !! | ATATGATGTTAGAATTAGAA+AGG | - | chr7_2:20375038-20375057 | None:intergenic | 20.0% |
| !! | TACTATCACTCTAATTATAT+TGG | - | chr7_2:20375242-20375261 | None:intergenic | 20.0% |
| !! | GAGTGATAGTAATAAAAATA+AGG | + | chr7_2:20375251-20375270 | Msa1052210:intron | 20.0% |
| !!! | ATATGTTTAGCTATTTTCAG+TGG | + | chr7_2:20374175-20374194 | Msa1052210:intron | 25.0% |
| !!! | TTTTCAGTGGTTTTAATTTG+CGG | + | chr7_2:20374188-20374207 | Msa1052210:intron | 25.0% |
| !! | ATCTTAAAAACTGTTACTTG+TGG | + | chr7_2:20374293-20374312 | Msa1052210:intron | 25.0% |
| ! | AAAAAGGATACACAATATGA+AGG | - | chr7_2:20374377-20374396 | None:intergenic | 25.0% |
| ! | TTATAGATAAAAGGGAAACT+CGG | - | chr7_2:20374460-20374479 | None:intergenic | 25.0% |
| !! | CACTCTTGTTTATTTATATC+AGG | - | chr7_2:20374605-20374624 | None:intergenic | 25.0% |
| !!! | CAACATTTTGATTTTTCTGA+AGG | + | chr7_2:20374968-20374987 | Msa1052210:intron | 25.0% |
| ! | TATCACTCTAATTATATTGG+AGG | - | chr7_2:20375239-20375258 | None:intergenic | 25.0% |
| !! | ACTTTTAACACATAACATGT+TGG | - | chr7_2:20375331-20375350 | None:intergenic | 25.0% |
| !!! | ATATGTTTAGCTATTTTCAG+TGG | + | chr7_2:20374175-20374194 | Msa1052210:intron | 25.0% |
| !!! | TTTTCAGTGGTTTTAATTTG+CGG | + | chr7_2:20374188-20374207 | Msa1052210:intron | 25.0% |
| !! | ATCTTAAAAACTGTTACTTG+TGG | + | chr7_2:20374293-20374312 | Msa1052210:intron | 25.0% |
| ! | AAAAAGGATACACAATATGA+AGG | - | chr7_2:20374377-20374396 | None:intergenic | 25.0% |
| ! | TTATAGATAAAAGGGAAACT+CGG | - | chr7_2:20374460-20374479 | None:intergenic | 25.0% |
| !! | CACTCTTGTTTATTTATATC+AGG | - | chr7_2:20374605-20374624 | None:intergenic | 25.0% |
| !!! | CAACATTTTGATTTTTCTGA+AGG | + | chr7_2:20374968-20374987 | Msa1052210:intron | 25.0% |
| ! | TATCACTCTAATTATATTGG+AGG | - | chr7_2:20375239-20375258 | None:intergenic | 25.0% |
| !! | ACTTTTAACACATAACATGT+TGG | - | chr7_2:20375331-20375350 | None:intergenic | 25.0% |
| TGACAACATAACTACAATTG+TGG | - | chr7_2:20374265-20374284 | None:intergenic | 30.0% | |
| GAGTGTATTTATTCCTAGTT+AGG | + | chr7_2:20374495-20374514 | Msa1052210:intron | 30.0% | |
| TATTTATTCCTAGTTAGGAG+AGG | + | chr7_2:20374500-20374519 | Msa1052210:intron | 30.0% | |
| ! | TGTAAAACAAACTTTGAGAG+AGG | + | chr7_2:20374741-20374760 | Msa1052210:intron | 30.0% |
| AGTTGCTTAGATTACTTCAA+TGG | + | chr7_2:20374828-20374847 | Msa1052210:intron | 30.0% | |
| GTTGCTTAGATTACTTCAAT+GGG | + | chr7_2:20374829-20374848 | Msa1052210:intron | 30.0% | |
| TTGCTTAGATTACTTCAATG+GGG | + | chr7_2:20374830-20374849 | Msa1052210:intron | 30.0% | |
| ATGATCTTCAACATACATGT+AGG | - | chr7_2:20374906-20374925 | None:intergenic | 30.0% | |
| TTCATTCTAACATACCATCT+TGG | - | chr7_2:20375171-20375190 | None:intergenic | 30.0% | |
| !! | TAACATGTTGGCTGATTTTT+GGG | - | chr7_2:20375319-20375338 | None:intergenic | 30.0% |
| !! | ATAACATGTTGGCTGATTTT+TGG | - | chr7_2:20375320-20375339 | None:intergenic | 30.0% |
| GCTCATAAAACTATTCTATG+TGG | - | chr7_2:20375361-20375380 | None:intergenic | 30.0% | |
| CTTTCAATGTTGTCAAACTT+TGG | - | chr7_2:20375457-20375476 | None:intergenic | 30.0% | |
| CAAAGTTTGACAACATTGAA+AGG | + | chr7_2:20375455-20375474 | Msa1052210:CDS | 30.0% | |
| CAACATTGAAAGGTTACTAT+TGG | + | chr7_2:20375465-20375484 | Msa1052210:CDS | 30.0% | |
| GATACTAAAAGTTGTAGTTG+TGG | - | chr7_2:20375494-20375513 | None:intergenic | 30.0% | |
| TGACAACATAACTACAATTG+TGG | - | chr7_2:20374265-20374284 | None:intergenic | 30.0% | |
| GAGTGTATTTATTCCTAGTT+AGG | + | chr7_2:20374495-20374514 | Msa1052210:intron | 30.0% | |
| TATTTATTCCTAGTTAGGAG+AGG | + | chr7_2:20374500-20374519 | Msa1052210:intron | 30.0% | |
| ! | TGTAAAACAAACTTTGAGAG+AGG | + | chr7_2:20374741-20374760 | Msa1052210:intron | 30.0% |
| AGTTGCTTAGATTACTTCAA+TGG | + | chr7_2:20374828-20374847 | Msa1052210:intron | 30.0% | |
| GTTGCTTAGATTACTTCAAT+GGG | + | chr7_2:20374829-20374848 | Msa1052210:intron | 30.0% | |
| TTGCTTAGATTACTTCAATG+GGG | + | chr7_2:20374830-20374849 | Msa1052210:intron | 30.0% | |
| ATGATCTTCAACATACATGT+AGG | - | chr7_2:20374906-20374925 | None:intergenic | 30.0% | |
| TTCATTCTAACATACCATCT+TGG | - | chr7_2:20375171-20375190 | None:intergenic | 30.0% | |
| !! | TAACATGTTGGCTGATTTTT+GGG | - | chr7_2:20375319-20375338 | None:intergenic | 30.0% |
| !! | ATAACATGTTGGCTGATTTT+TGG | - | chr7_2:20375320-20375339 | None:intergenic | 30.0% |
| GCTCATAAAACTATTCTATG+TGG | - | chr7_2:20375361-20375380 | None:intergenic | 30.0% | |
| CTTTCAATGTTGTCAAACTT+TGG | - | chr7_2:20375457-20375476 | None:intergenic | 30.0% | |
| CAAAGTTTGACAACATTGAA+AGG | + | chr7_2:20375455-20375474 | Msa1052210:CDS | 30.0% | |
| CAACATTGAAAGGTTACTAT+TGG | + | chr7_2:20375465-20375484 | Msa1052210:CDS | 30.0% | |
| GATACTAAAAGTTGTAGTTG+TGG | - | chr7_2:20375494-20375513 | None:intergenic | 30.0% | |
| AACAAGTAAAACCTCATCCT+CGG | - | chr7_2:20374019-20374038 | None:intergenic | 35.0% | |
| !!! | GGTTTTACTTGTTTTGAAGC+TGG | + | chr7_2:20374026-20374045 | Msa1052210:CDS | 35.0% |
| CATCTCAAATTCCATCTAGT+AGG | + | chr7_2:20374061-20374080 | Msa1052210:CDS | 35.0% | |
| AGAAGTTGTGCAAATATTGC+AGG | + | chr7_2:20374095-20374114 | Msa1052210:CDS | 35.0% | |
| TTAAAACTCCTGTTCCTCAA+AGG | + | chr7_2:20374121-20374140 | Msa1052210:intron | 35.0% | |
| CAAAATACTTCCATCCTTTG+AGG | - | chr7_2:20374138-20374157 | None:intergenic | 35.0% | |
| ! | TGTGTTTCTCAGAAGTACAA+AGG | - | chr7_2:20374232-20374251 | None:intergenic | 35.0% |
| ACAAAACAAAATTTGGGTGC+AGG | + | chr7_2:20374631-20374650 | Msa1052210:intron | 35.0% | |
| ATGTTCTATGTTGCAGTTTG+CGG | + | chr7_2:20374683-20374702 | Msa1052210:intron | 35.0% | |
| ! | AAAACAAACTTTGAGAGAGG+TGG | + | chr7_2:20374744-20374763 | Msa1052210:intron | 35.0% |
| ACTTCAATGGGGCTAAAAAT+AGG | + | chr7_2:20374841-20374860 | Msa1052210:intron | 35.0% | |
| AAAATGCTGATCATTCCTAG+AGG | - | chr7_2:20375132-20375151 | None:intergenic | 35.0% | |
| ATTCTAACATACCATCTTGG+TGG | - | chr7_2:20375168-20375187 | None:intergenic | 35.0% | |
| TATGTTAGAATGAAGCTTCG+TGG | + | chr7_2:20375177-20375196 | Msa1052210:intron | 35.0% | |
| GACACTGAAGTTAGAATTCT+AGG | + | chr7_2:20375419-20375438 | Msa1052210:CDS | 35.0% | |
| ! | GTATCTGAATTTGCTCCAAA+TGG | + | chr7_2:20375509-20375528 | Msa1052210:CDS | 35.0% |
| TTGGATTGCAAGTTACCATT+TGG | - | chr7_2:20375527-20375546 | None:intergenic | 35.0% | |
| AACAAGTAAAACCTCATCCT+CGG | - | chr7_2:20374019-20374038 | None:intergenic | 35.0% | |
| !!! | GGTTTTACTTGTTTTGAAGC+TGG | + | chr7_2:20374026-20374045 | Msa1052210:CDS | 35.0% |
| CATCTCAAATTCCATCTAGT+AGG | + | chr7_2:20374061-20374080 | Msa1052210:CDS | 35.0% | |
| AGAAGTTGTGCAAATATTGC+AGG | + | chr7_2:20374095-20374114 | Msa1052210:CDS | 35.0% | |
| TTAAAACTCCTGTTCCTCAA+AGG | + | chr7_2:20374121-20374140 | Msa1052210:intron | 35.0% | |
| CAAAATACTTCCATCCTTTG+AGG | - | chr7_2:20374138-20374157 | None:intergenic | 35.0% | |
| ! | TGTGTTTCTCAGAAGTACAA+AGG | - | chr7_2:20374232-20374251 | None:intergenic | 35.0% |
| ACAAAACAAAATTTGGGTGC+AGG | + | chr7_2:20374631-20374650 | Msa1052210:intron | 35.0% | |
| ATGTTCTATGTTGCAGTTTG+CGG | + | chr7_2:20374683-20374702 | Msa1052210:intron | 35.0% | |
| ! | AAAACAAACTTTGAGAGAGG+TGG | + | chr7_2:20374744-20374763 | Msa1052210:intron | 35.0% |
| ACTTCAATGGGGCTAAAAAT+AGG | + | chr7_2:20374841-20374860 | Msa1052210:intron | 35.0% | |
| AAAATGCTGATCATTCCTAG+AGG | - | chr7_2:20375132-20375151 | None:intergenic | 35.0% | |
| ATTCTAACATACCATCTTGG+TGG | - | chr7_2:20375168-20375187 | None:intergenic | 35.0% | |
| TATGTTAGAATGAAGCTTCG+TGG | + | chr7_2:20375177-20375196 | Msa1052210:intron | 35.0% | |
| GACACTGAAGTTAGAATTCT+AGG | + | chr7_2:20375419-20375438 | Msa1052210:CDS | 35.0% | |
| ! | GTATCTGAATTTGCTCCAAA+TGG | + | chr7_2:20375509-20375528 | Msa1052210:CDS | 35.0% |
| TTGGATTGCAAGTTACCATT+TGG | - | chr7_2:20375527-20375546 | None:intergenic | 35.0% | |
| ACAAGTAAAACCTCATCCTC+GGG | - | chr7_2:20374018-20374037 | None:intergenic | 40.0% | |
| !!! | ACTTGTTTTGAAGCTGGCTA+TGG | + | chr7_2:20374032-20374051 | Msa1052210:CDS | 40.0% |
| ! | TATTCCTTTTCGAAGCGCAT+TGG | - | chr7_2:20374535-20374554 | None:intergenic | 40.0% |
| TGTTCTATGTTGCAGTTTGC+GGG | + | chr7_2:20374684-20374703 | Msa1052210:intron | 40.0% | |
| !! | TTTTTCTGAAGGGTGAGACT+CGG | + | chr7_2:20374979-20374998 | Msa1052210:intron | 40.0% |
| GTTCTGCTAAAAATGCCTCT+AGG | + | chr7_2:20375114-20375133 | Msa1052210:intron | 40.0% | |
| AAATCCCATAACCACCAAGA+TGG | + | chr7_2:20375154-20375173 | Msa1052210:CDS | 40.0% | |
| ! | CATACCATCTTGGTGGTTAT+GGG | - | chr7_2:20375161-20375180 | None:intergenic | 40.0% |
| ! | ACATACCATCTTGGTGGTTA+TGG | - | chr7_2:20375162-20375181 | None:intergenic | 40.0% |
| ! | GGTTGAACTGACTCTTGAAA+AGG | - | chr7_2:20375218-20375237 | None:intergenic | 40.0% |
| !! | TGTTGTCAAACTTTGGTGTC+TGG | - | chr7_2:20375450-20375469 | None:intergenic | 40.0% |
| ACAAGTAAAACCTCATCCTC+GGG | - | chr7_2:20374018-20374037 | None:intergenic | 40.0% | |
| !!! | ACTTGTTTTGAAGCTGGCTA+TGG | + | chr7_2:20374032-20374051 | Msa1052210:CDS | 40.0% |
| ! | TATTCCTTTTCGAAGCGCAT+TGG | - | chr7_2:20374535-20374554 | None:intergenic | 40.0% |
| TGTTCTATGTTGCAGTTTGC+GGG | + | chr7_2:20374684-20374703 | Msa1052210:intron | 40.0% | |
| !! | TTTTTCTGAAGGGTGAGACT+CGG | + | chr7_2:20374979-20374998 | Msa1052210:intron | 40.0% |
| GTTCTGCTAAAAATGCCTCT+AGG | + | chr7_2:20375114-20375133 | Msa1052210:intron | 40.0% | |
| AAATCCCATAACCACCAAGA+TGG | + | chr7_2:20375154-20375173 | Msa1052210:CDS | 40.0% | |
| ! | CATACCATCTTGGTGGTTAT+GGG | - | chr7_2:20375161-20375180 | None:intergenic | 40.0% |
| ! | ACATACCATCTTGGTGGTTA+TGG | - | chr7_2:20375162-20375181 | None:intergenic | 40.0% |
| ! | GGTTGAACTGACTCTTGAAA+AGG | - | chr7_2:20375218-20375237 | None:intergenic | 40.0% |
| !! | TGTTGTCAAACTTTGGTGTC+TGG | - | chr7_2:20375450-20375469 | None:intergenic | 40.0% |
| TCCATCTAGTAGGCCTACTA+TGG | + | chr7_2:20374071-20374090 | Msa1052210:CDS | 45.0% | |
| TGCACAACTTCTGCCATAGT+AGG | - | chr7_2:20374087-20374106 | None:intergenic | 45.0% | |
| AACTCCTGTTCCTCAAAGGA+TGG | + | chr7_2:20374125-20374144 | Msa1052210:intron | 45.0% | |
| ! | ACTTCCATCCTTTGAGGAAC+AGG | - | chr7_2:20374132-20374151 | None:intergenic | 45.0% |
| TGTGGATACCTCTCCTAACT+AGG | - | chr7_2:20374511-20374530 | None:intergenic | 45.0% | |
| ! | TTTTCGAAGCGCATTGGATG+TGG | - | chr7_2:20374529-20374548 | None:intergenic | 45.0% |
| ACATCCAATGCGCTTCGAAA+AGG | + | chr7_2:20374528-20374547 | Msa1052210:CDS | 45.0% | |
| GGGTGCAGGACTAACTAAAA+CGG | + | chr7_2:20374645-20374664 | Msa1052210:intron | 45.0% | |
| ! | ACTTCAGTGTCGAAGACTTC+TGG | - | chr7_2:20375410-20375429 | None:intergenic | 45.0% |
| TCCATCTAGTAGGCCTACTA+TGG | + | chr7_2:20374071-20374090 | Msa1052210:CDS | 45.0% | |
| TGCACAACTTCTGCCATAGT+AGG | - | chr7_2:20374087-20374106 | None:intergenic | 45.0% | |
| AACTCCTGTTCCTCAAAGGA+TGG | + | chr7_2:20374125-20374144 | Msa1052210:intron | 45.0% | |
| ! | ACTTCCATCCTTTGAGGAAC+AGG | - | chr7_2:20374132-20374151 | None:intergenic | 45.0% |
| TGTGGATACCTCTCCTAACT+AGG | - | chr7_2:20374511-20374530 | None:intergenic | 45.0% | |
| ! | TTTTCGAAGCGCATTGGATG+TGG | - | chr7_2:20374529-20374548 | None:intergenic | 45.0% |
| ACATCCAATGCGCTTCGAAA+AGG | + | chr7_2:20374528-20374547 | Msa1052210:CDS | 45.0% | |
| GGGTGCAGGACTAACTAAAA+CGG | + | chr7_2:20374645-20374664 | Msa1052210:intron | 45.0% | |
| ! | ACTTCAGTGTCGAAGACTTC+TGG | - | chr7_2:20375410-20375429 | None:intergenic | 45.0% |
| !!! | AATTGAATTATATTTTATAT+AGG | - | chr7_2:20374793-20374812 | None:intergenic | 5.0% |
| !!! | AATTGAATTATATTTTATAT+AGG | - | chr7_2:20374793-20374812 | None:intergenic | 5.0% |
| GAACGAATATCCCGAGGATG+AGG | + | chr7_2:20374005-20374024 | Msa1052210:CDS | 50.0% | |
| GCCATAGTAGGCCTACTAGA+TGG | - | chr7_2:20374075-20374094 | None:intergenic | 50.0% | |
| GAAGCTTCGTGGTGTTTGCT+TGG | + | chr7_2:20375188-20375207 | Msa1052210:intron | 50.0% | |
| GAACGAATATCCCGAGGATG+AGG | + | chr7_2:20374005-20374024 | Msa1052210:CDS | 50.0% | |
| GCCATAGTAGGCCTACTAGA+TGG | - | chr7_2:20374075-20374094 | None:intergenic | 50.0% | |
| GAAGCTTCGTGGTGTTTGCT+TGG | + | chr7_2:20375188-20375207 | Msa1052210:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 20374003 | 20375550 | 20374003 | ID=Msa1052210;Name=Msa1052210 |
| chr7_2 | mRNA | 20374003 | 20375550 | 20374003 | ID=Msa1052210-mRNA-1;Parent=Msa1052210;Name=Msa1052210-mRNA-1;_AED=0.63;_eAED=0.63;_QI=0|0|0|0.4|1|1|5|0|137 |
| chr7_2 | exon | 20374003 | 20374116 | 20374003 | ID=Msa1052210-mRNA-1:exon:4581;Parent=Msa1052210-mRNA-1 |
| chr7_2 | exon | 20374513 | 20374564 | 20374513 | ID=Msa1052210-mRNA-1:exon:4582;Parent=Msa1052210-mRNA-1 |
| chr7_2 | exon | 20374699 | 20374705 | 20374699 | ID=Msa1052210-mRNA-1:exon:4583;Parent=Msa1052210-mRNA-1 |
| chr7_2 | exon | 20375115 | 20375175 | 20375115 | ID=Msa1052210-mRNA-1:exon:4584;Parent=Msa1052210-mRNA-1 |
| chr7_2 | exon | 20375371 | 20375550 | 20375371 | ID=Msa1052210-mRNA-1:exon:4585;Parent=Msa1052210-mRNA-1 |
| chr7_2 | CDS | 20374003 | 20374116 | 20374003 | ID=Msa1052210-mRNA-1:cds;Parent=Msa1052210-mRNA-1 |
| chr7_2 | CDS | 20374513 | 20374564 | 20374513 | ID=Msa1052210-mRNA-1:cds;Parent=Msa1052210-mRNA-1 |
| chr7_2 | CDS | 20374699 | 20374705 | 20374699 | ID=Msa1052210-mRNA-1:cds;Parent=Msa1052210-mRNA-1 |
| chr7_2 | CDS | 20375115 | 20375175 | 20375115 | ID=Msa1052210-mRNA-1:cds;Parent=Msa1052210-mRNA-1 |
| chr7_2 | CDS | 20375371 | 20375550 | 20375371 | ID=Msa1052210-mRNA-1:cds;Parent=Msa1052210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
