AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1010810

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1010810 MtrunA17_Chr1g0198761 75.171 733 181 1 26 757 18 750 0.0 1162
Msa1010810 MtrunA17_Chr5g0431001 75.155 483 113 1 1 476 1 483 0.0 746
Msa1010810 MtrunA17_Chr2g0276841 47.520 625 317 4 53 674 69 685 0.0 618
Msa1010810 MtrunA17_Chr2g0294841 40.822 730 400 5 34 740 25 745 0.0 576
Msa1010810 MtrunA17_Chr2g0290391 45.046 646 320 8 50 676 47 676 0.0 563
Msa1010810 MtrunA17_Chr5g0448761 31.029 593 379 10 52 627 58 637 8.77e-83 280
Msa1010810 MtrunA17_Chr1g0202341 28.829 666 433 14 19 668 20 660 1.33e-79 269
Msa1010810 MtrunA17_Chr2g0296781 29.075 681 434 21 60 717 3 657 8.87e-77 262
Msa1010810 MtrunA17_Chr3g0080351 29.010 586 364 11 52 620 74 624 6.82e-74 256
Msa1010810 MtrunA17_Chr5g0441581 28.258 683 430 20 54 712 32 678 2.05e-72 249
Msa1010810 MtrunA17_Chr2g0329031 26.891 595 391 10 25 614 1 556 1.00e-70 246
Msa1010810 MtrunA17_Chr2g0287651 28.571 574 372 12 60 618 81 631 1.28e-68 242
Msa1010810 MtrunA17_Chr1g0207551 29.688 576 377 12 54 620 34 590 1.61e-68 241
Msa1010810 MtrunA17_Chr6g0477261 30.601 549 349 14 185 711 2 540 1.26e-67 236
Msa1010810 MtrunA17_Chr1g0203051 27.322 549 375 11 66 607 91 622 2.13e-67 234
Msa1010810 MtrunA17_Chr6g0458391 27.304 586 376 11 47 620 219 766 3.29e-65 231
Msa1010810 MtrunA17_Chr3g0082121 29.340 576 373 16 53 620 42 591 1.86e-63 225
Msa1010810 MtrunA17_Chr8g0363841 28.720 578 379 15 55 618 18 576 6.98e-63 223
Msa1010810 MtrunA17_Chr5g0440451 25.870 661 415 16 47 671 34 655 1.19e-62 226
Msa1010810 MtrunA17_Chr5g0448511 32.011 378 251 3 242 614 16 392 9.06e-58 206
Msa1010810 MtrunA17_Chr1g0196541 26.569 685 441 19 60 717 3 652 1.01e-57 209
Msa1010810 MtrunA17_Chr2g0287061 27.833 600 365 17 33 622 165 706 2.39e-57 209
Msa1010810 MtrunA17_Chr1g0203721 25.758 594 376 15 57 620 66 624 5.55e-56 206
Msa1010810 MtrunA17_Chr3g0081281 93.548 93 6 0 202 294 1 93 1.82e-54 182
Msa1010810 MtrunA17_Chr2g0324011 26.117 582 389 11 54 618 10 567 2.90e-53 194
Msa1010810 MtrunA17_Chr2g0291581 23.926 652 436 18 53 678 70 687 1.06e-51 191
Msa1010810 MtrunA17_Chr3g0118611 27.326 516 347 12 196 697 79 580 1.36e-51 192
Msa1010810 MtrunA17_Chr5g0430921 83.529 85 14 0 673 757 1 85 5.86e-45 155
Msa1010810 MtrunA17_Chr2g0291591 23.792 538 341 15 50 558 60 557 1.94e-37 148
Msa1010810 MtrunA17_Chr1g0164591 35.294 204 130 2 255 457 106 308 1.84e-36 140
Msa1010810 MtrunA17_Chr7g0258861 25.253 297 207 6 47 340 4 288 8.42e-21 94.0
Msa1010810 MtrunA17_Chr2g0308841 25.359 209 151 2 411 614 14 222 2.85e-15 76.6
Msa1010810 MtrunA17_Chr2g0329361 28.141 199 115 8 6 192 11 193 6.75e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1010810 AT1G10240.2 45.414 676 352 6 19 690 17 679 0.0 613
Msa1010810 AT1G10240.1 45.414 676 352 6 19 690 17 679 0.0 613
Msa1010810 AT5G28530.3 42.025 652 354 6 31 671 32 670 1.49e-177 525
Msa1010810 AT5G28530.2 42.025 652 354 6 31 671 32 670 1.49e-177 525
Msa1010810 AT5G28530.1 41.871 652 359 6 31 671 32 674 9.73e-177 523
Msa1010810 AT5G28530.5 37.695 642 333 8 31 671 32 607 1.04e-142 433
Msa1010810 AT5G28530.4 37.539 642 338 8 31 671 32 611 2.82e-142 432
Msa1010810 AT4G38180.1 31.443 582 373 9 52 621 71 638 1.22e-84 285
Msa1010810 AT4G15090.1 27.077 698 466 14 48 720 36 715 6.64e-76 262
Msa1010810 AT4G15090.5 27.077 698 466 14 48 720 36 715 6.64e-76 262
Msa1010810 AT4G15090.3 27.077 698 466 14 48 720 36 715 6.64e-76 262
Msa1010810 AT4G15090.2 27.077 698 466 14 48 720 36 715 6.64e-76 262
Msa1010810 AT4G15090.4 27.077 698 466 14 48 720 36 715 6.64e-76 262
Msa1010810 AT3G22170.2 25.462 703 453 19 31 706 48 706 1.20e-66 237
Msa1010810 AT3G22170.1 25.462 703 453 19 31 706 48 706 1.20e-66 237
Msa1010810 AT1G76320.3 26.585 568 373 8 60 614 3 539 1.51e-66 233
Msa1010810 AT1G76320.1 26.585 568 373 8 60 614 3 539 2.04e-66 234
Msa1010810 AT1G76320.4 26.585 568 373 8 60 614 3 539 2.04e-66 234
Msa1010810 AT1G76320.2 26.585 568 373 8 60 614 3 539 2.69e-66 234
Msa1010810 AT2G27110.2 26.471 612 391 17 54 654 49 612 1.07e-54 202
Msa1010810 AT2G27110.1 26.471 612 391 17 54 654 49 612 1.07e-54 202
Msa1010810 AT3G06250.2 26.261 575 345 15 54 614 190 699 1.10e-51 193
Msa1010810 AT3G06250.1 26.261 575 345 15 54 614 190 699 1.10e-51 193
Msa1010810 AT3G06250.3 26.261 575 345 15 54 614 190 699 1.10e-51 193
Msa1010810 AT2G27110.3 28.571 434 292 10 229 654 44 467 3.43e-50 188
Msa1010810 AT4G19990.5 26.116 605 376 15 56 639 23 577 1.65e-48 183
Msa1010810 AT4G19990.3 26.116 605 376 15 56 639 23 577 1.70e-48 183
Msa1010810 AT4G19990.4 26.116 605 376 15 56 639 23 577 1.70e-48 183
Msa1010810 AT4G19990.6 26.116 605 376 15 56 639 23 577 2.37e-48 183
Msa1010810 AT4G19990.2 26.116 605 376 15 56 639 23 577 2.37e-48 183
Msa1010810 AT4G19990.7 26.116 605 376 15 56 639 37 591 2.46e-48 183
Msa1010810 AT2G32250.5 23.902 569 371 11 57 619 41 553 4.45e-48 182
Msa1010810 AT2G32250.6 23.902 569 371 11 57 619 41 553 5.72e-48 182
Msa1010810 AT2G32250.1 23.902 569 371 11 57 619 41 553 5.72e-48 182
Msa1010810 AT2G32250.3 23.902 569 371 11 57 619 41 553 5.72e-48 182
Msa1010810 AT2G32250.2 23.902 569 371 11 57 619 41 553 6.19e-48 182
Msa1010810 AT2G32250.4 23.902 569 371 11 57 619 41 553 6.19e-48 182
Msa1010810 AT5G18960.2 25.391 575 363 16 49 614 206 723 9.56e-48 182
Msa1010810 AT5G18960.1 25.391 575 363 16 49 614 206 723 9.56e-48 182
Msa1010810 AT2G32250.8 23.852 566 369 11 60 619 3 512 1.48e-47 181
Msa1010810 AT2G32250.7 23.852 566 369 11 60 619 3 512 1.62e-47 181
Msa1010810 AT4G38170.1 29.091 385 262 7 242 620 21 400 1.17e-46 175
Msa1010810 AT4G19990.1 26.799 556 342 13 105 639 9 520 2.37e-45 173
Msa1010810 AT1G80010.1 24.188 616 364 19 54 617 95 659 2.73e-45 174
Msa1010810 AT1G52520.1 24.144 584 393 17 53 617 84 636 1.11e-44 172

Find 101 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCACATATTCTTGAGTTTC+TGG 0.087082 7_1:-14120605 None:intergenic
GCAATCCAAACTTACTTATT+AGG 0.125684 7_1:-14120848 None:intergenic
ACATCACAAACATCGTTATT+TGG 0.152623 7_1:-14120647 None:intergenic
ACCCATCTGGTCTTTATAAA+AGG 0.174050 7_1:+14118690 Msa1010810:CDS
ATGATATGCCACTTGGAATA+TGG 0.191467 7_1:+14119299 Msa1010810:CDS
TTCCTTTGCGTGGGCTTTAA+AGG 0.228847 7_1:+14119390 Msa1010810:CDS
CAATCCAAACTTACTTATTA+GGG 0.237365 7_1:-14120847 None:intergenic
ATTCGAGAATACGAATCTTT+TGG 0.263988 7_1:+14119235 Msa1010810:CDS
CTCATGTTGGAGCAACTTAA+AGG 0.285515 7_1:-14120171 None:intergenic
TCATCACAATCATGAGTTAT+TGG 0.289585 7_1:+14118877 Msa1010810:CDS
GTTGACTACATGGCTAGATT+TGG 0.300626 7_1:-14120450 None:intergenic
TATTGATGAATGTAACAAAT+TGG 0.311506 7_1:+14119183 Msa1010810:CDS
GCAGCTTCAACTCCTCCTTT+TGG 0.319527 7_1:-14120719 None:intergenic
TTGACTACATGGCTAGATTT+GGG 0.326040 7_1:-14120449 None:intergenic
TCAATCTCTGATTCGATGTT+TGG 0.328733 7_1:+14120499 Msa1010810:CDS
TCAAGAATATGTGATTGATT+TGG 0.332734 7_1:+14120613 Msa1010810:CDS
TGATCCTCTTGGCCGACCTT+TGG 0.339991 7_1:-14120693 None:intergenic
TTGGTGTTGCTGTCAAAATT+AGG 0.355142 7_1:+14120042 Msa1010810:CDS
ACTTAAGGAAGCCATTAAAA+TGG 0.358796 7_1:+14119568 Msa1010810:CDS
AAAGTCATTCAAGATATAAA+AGG 0.358979 7_1:+14120578 Msa1010810:CDS
AAAATCTGTCAAACTTGTAT+TGG 0.376571 7_1:-14119918 None:intergenic
CCTCATGTCAGTAACATTGA+TGG 0.379564 7_1:+14118530 Msa1010810:CDS
CAAAATGCATGCTTTGTGTT+TGG 0.392144 7_1:-14119596 None:intergenic
AGATCAAGATCCCGCACTTA+AGG 0.392664 7_1:+14119553 Msa1010810:CDS
AATAGTGAATTCATATTTGA+AGG 0.396961 7_1:-14119164 None:intergenic
ATTCGATCCCAGAGTTGTAT+TGG 0.401693 7_1:+14119079 Msa1010810:CDS
CTAAATATTTGCCCTTCAAA+AGG 0.402295 7_1:-14118560 None:intergenic
CGAATATCTCTTTCTAGAAA+AGG 0.402638 7_1:-14119049 None:intergenic
TGGTAGTGATTGGCAATCTA+AGG 0.404374 7_1:+14118424 Msa1010810:CDS
GATGCAACATGTTCCTCAAT+AGG 0.408458 7_1:-14120131 None:intergenic
TTTCTTTACCAATACAACTC+TGG 0.409477 7_1:-14119087 None:intergenic
TTTGCTGGGATGACAACAAC+AGG 0.410409 7_1:+14119851 Msa1010810:CDS
TGGAAAAGAGCAAGTCAATA+TGG 0.415923 7_1:-14119787 None:intergenic
GAGCATATTATGTGGGCATT+TGG 0.419517 7_1:+14119205 Msa1010810:CDS
TGATATGCCACTTGGAATAT+GGG 0.434301 7_1:+14119300 Msa1010810:CDS
TTCTTTACCAATACAACTCT+GGG 0.436134 7_1:-14119086 None:intergenic
CTTTCTTGTCTCCATCGAAA+AGG 0.441125 7_1:-14120416 None:intergenic
CCCATCTGGTCTTTATAAAA+GGG 0.446061 7_1:+14118691 Msa1010810:CDS
TTGGGCATTAGCTTATTTGA+AGG 0.451954 7_1:+14119820 Msa1010810:CDS
AAAATAATGATGGTAGTGAT+TGG 0.465147 7_1:+14118414 Msa1010810:CDS
CGAAAGAGAGTGGAAATCAA+TGG 0.466880 7_1:+14119736 Msa1010810:CDS
ACATGCTATTTGTGTGCTAA+TGG 0.470714 7_1:+14120358 Msa1010810:CDS
ATCCTATTGTTGTCAAAAGC+TGG 0.471203 7_1:+14118962 Msa1010810:CDS
GGGCAAATATTTAGTAATGA+TGG 0.472481 7_1:+14118569 Msa1010810:CDS
GGAAAACATGTACTGATATG+AGG 0.482616 7_1:-14120110 None:intergenic
TTTCTTGTCTCCATCGAAAA+GGG 0.485154 7_1:-14120415 None:intergenic
GTTGGAATGTTGCGATAAGC+AGG 0.492886 7_1:-14118923 None:intergenic
TGATTAGTTCCACCACAACT+TGG 0.507884 7_1:-14120767 None:intergenic
CGCTGTCATGTTCCAAGTTG+TGG 0.511566 7_1:+14120755 Msa1010810:CDS
CCAAGAGGATCAAGACCAAA+AGG 0.514192 7_1:+14120704 Msa1010810:CDS
TGGAGCAACTTAAAGGCATA+TGG 0.514224 7_1:-14120164 None:intergenic
TGTCAGTAACATTGATGGGT+TGG 0.515305 7_1:+14118535 Msa1010810:CDS
GTCAAAATTAGGAATCAAGC+TGG 0.516805 7_1:+14120053 Msa1010810:CDS
TAGATAACTCAATCTCATGT+TGG 0.522807 7_1:-14120184 None:intergenic
ACGGTGGGCGTCAAGTAAGT+TGG 0.528714 7_1:+14120270 Msa1010810:CDS
TAGCATTGCAGTTGACTACA+TGG 0.529793 7_1:-14120460 None:intergenic
TTGTGGCAAAGTTGTCAAGT+TGG 0.535071 7_1:+14119630 Msa1010810:CDS
ACAAATTGGAGCATATTATG+TGG 0.539309 7_1:+14119197 Msa1010810:CDS
AGAAGATTTCTTCCTTTGCG+TGG 0.551128 7_1:+14119380 Msa1010810:CDS
GAAGATTTCTTCCTTTGCGT+GGG 0.554338 7_1:+14119381 Msa1010810:CDS
ATACGACTTTGATCAGCAGT+TGG 0.558928 7_1:-14118941 None:intergenic
AATCGTTATGATATGCCACT+TGG 0.563602 7_1:+14119292 Msa1010810:CDS
TTAATGGCTTCCTTAAGTGC+GGG 0.567307 7_1:-14119563 None:intergenic
CTCATGTCAGTAACATTGAT+GGG 0.568274 7_1:+14118531 Msa1010810:CDS
AGGGAATTTGTTTGTCATCG+TGG 0.571012 7_1:+14118710 Msa1010810:CDS
AAATCTTCAAAATGTAATTG+TGG 0.573900 7_1:+14118785 Msa1010810:CDS
TTTAATGGCTTCCTTAAGTG+CGG 0.575636 7_1:-14119564 None:intergenic
CAACATCATACAAAAGTTGA+CGG 0.577068 7_1:+14120251 Msa1010810:CDS
TAATGCCCAAAATTCACGAT+TGG 0.579684 7_1:-14119807 None:intergenic
TAGGAATCAAGCTGGAGAAG+AGG 0.579829 7_1:+14120061 Msa1010810:CDS
TTGTTACAAAATCCAAAGGT+CGG 0.582656 7_1:+14120681 Msa1010810:CDS
CGGATGATTTCGAAAGAGAG+TGG 0.582752 7_1:+14119726 Msa1010810:CDS
ATCATACAAAAGTTGACGGT+GGG 0.583166 7_1:+14120255 Msa1010810:CDS
ACAACGCAACATTAACGAAG+TGG 0.585119 7_1:+14118745 Msa1010810:CDS
CCCATTGTTACAAAATCCAA+AGG 0.587534 7_1:+14120677 Msa1010810:CDS
CAAATTGGAGCATATTATGT+GGG 0.593912 7_1:+14119198 Msa1010810:CDS
AATCCAAACTTACTTATTAG+GGG 0.596179 7_1:-14120846 None:intergenic
TAATTGTGGTGCAAAGATGT+TGG 0.600117 7_1:+14118799 Msa1010810:CDS
CAGAGATTGAAACTTAGTAG+AGG 0.604303 7_1:-14120486 None:intergenic
TGACTACATGGCTAGATTTG+GGG 0.607240 7_1:-14120448 None:intergenic
TGGGTTGGTGTTGATAATCA+CGG 0.609843 7_1:+14119319 Msa1010810:CDS
ATGTCTGAAGAAAATAATGA+TGG 0.610520 7_1:+14118404 Msa1010810:CDS
TACTTATTAGGGGATTGAGA+AGG 0.610633 7_1:-14120836 None:intergenic
TGCACAATTTGATTTGTGCA+AGG 0.611924 7_1:+14119760 Msa1010810:CDS
TACCTTTAAAGCCCACGCAA+AGG 0.613106 7_1:-14119392 None:intergenic
CTTTAAACAAGAGTTTCACA+TGG 0.631523 7_1:+14119685 Msa1010810:CDS
GAATTTGTTTGTCATCGTGG+TGG 0.635704 7_1:+14118713 Msa1010810:CDS
AAATCCAAAGGTCGGCCAAG+AGG 0.639624 7_1:+14120689 Msa1010810:CDS
AGAGAACGAGTTGCTACTAG+AGG 0.645909 7_1:+14120548 Msa1010810:CDS
ATGCCACTTGGAATATGGGT+TGG 0.648688 7_1:+14119304 Msa1010810:CDS
CCATCAATGTTACTGACATG+AGG 0.654897 7_1:-14118530 None:intergenic
GAGGAGTTGAAGCTGCAAAG+AGG 0.660327 7_1:+14120726 Msa1010810:CDS
GCAGCAACTGAAATTGACAA+TGG 0.666988 7_1:+14120215 Msa1010810:CDS
AGAGGATCAAGACCAAAAGG+AGG 0.673931 7_1:+14120707 Msa1010810:CDS
GGTGTATCATTTAGAATGTG+CGG 0.674155 7_1:+14119706 Msa1010810:CDS
CATCATACAAAAGTTGACGG+TGG 0.678338 7_1:+14120254 Msa1010810:CDS
ACACCAACCCATATTCCAAG+TGG 0.679959 7_1:-14119307 None:intergenic
TGTCATGTTCCAAGTTGTGG+TGG 0.684261 7_1:+14120758 Msa1010810:CDS
ATAACGATTTATTCTATACG+TGG 0.695494 7_1:-14119278 None:intergenic
CTTGGAACATGACAGCGACG+AGG 0.719993 7_1:-14120749 None:intergenic
TTGCTGGGATGACAACAACA+GGG 0.722836 7_1:+14119852 Msa1010810:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCATTATCTTATAATTGA+GGG + chr7_1:14119995-14120014 Msa1010810:intron 15.0%
!! TAATTATTATATCTTTGTGT+AGG + chr7_1:14120019-14120038 Msa1010810:intron 15.0%
!!! TCAATTTTTTTCTTTTTGTT+TGG - chr7_1:14120809-14120828 None:intergenic 15.0%
!! AAATCTTCAAAATGTAATTG+TGG + chr7_1:14118785-14118804 Msa1010810:CDS 20.0%
!! TTAGAGAAAAAAATAGTTAC+AGG + chr7_1:14119019-14119038 Msa1010810:CDS 20.0%
!! AATAGTGAATTCATATTTGA+AGG - chr7_1:14119167-14119186 None:intergenic 20.0%
!! TATTGATGAATGTAACAAAT+TGG + chr7_1:14119183-14119202 Msa1010810:CDS 20.0%
!! GCATATATAAAAAGATTCTT+AGG + chr7_1:14119893-14119912 Msa1010810:CDS 20.0%
!! GAATCATTATCTTATAATTG+AGG + chr7_1:14119994-14120013 Msa1010810:intron 20.0%
!! AAAGTCATTCAAGATATAAA+AGG + chr7_1:14120578-14120597 Msa1010810:CDS 20.0%
! ATGTCTGAAGAAAATAATGA+TGG + chr7_1:14118404-14118423 Msa1010810:CDS 25.0%
!! AAAATAATGATGGTAGTGAT+TGG + chr7_1:14118414-14118433 Msa1010810:CDS 25.0%
!! TCTTTATTTGCACGAAAAAA+TGG + chr7_1:14118611-14118630 Msa1010810:CDS 25.0%
! TTGGTTGCTATAAAAACAAT+TGG + chr7_1:14118818-14118837 Msa1010810:CDS 25.0%
!!! TATAAAAACAATTGGCTTTG+AGG + chr7_1:14118826-14118845 Msa1010810:CDS 25.0%
! ATAACGATTTATTCTATACG+TGG - chr7_1:14119281-14119300 None:intergenic 25.0%
!!! TAGTTTTTGGATATTTTCCT+TGG - chr7_1:14119526-14119545 None:intergenic 25.0%
!! TGATCTGTAAGAATAGTTTT+TGG - chr7_1:14119539-14119558 None:intergenic 25.0%
! AAAATCTGTCAAACTTGTAT+TGG - chr7_1:14119921-14119940 None:intergenic 25.0%
! TATTATATCTTTGTGTAGGT+TGG + chr7_1:14120023-14120042 Msa1010810:intron 25.0%
!!! TGTAAAGAATTTGAGTTTTC+TGG + chr7_1:14120323-14120342 Msa1010810:CDS 25.0%
! TCAAGAATATGTGATTGATT+TGG + chr7_1:14120613-14120632 Msa1010810:CDS 25.0%
CTAAATATTTGCCCTTCAAA+AGG - chr7_1:14118563-14118582 None:intergenic 30.0%
GGGCAAATATTTAGTAATGA+TGG + chr7_1:14118569-14118588 Msa1010810:CDS 30.0%
!! GAAAAAATGGATTTTCGATC+AGG + chr7_1:14118624-14118643 Msa1010810:CDS 30.0%
!! AATTGGCTTTGAGGAAAAAT+GGG + chr7_1:14118835-14118854 Msa1010810:CDS 30.0%
TCATCACAATCATGAGTTAT+TGG + chr7_1:14118877-14118896 Msa1010810:CDS 30.0%
TGAGTTATTGGATGAAAAAG+AGG + chr7_1:14118889-14118908 Msa1010810:CDS 30.0%
! CGAATATCTCTTTCTAGAAA+AGG - chr7_1:14119052-14119071 None:intergenic 30.0%
TTCTTTACCAATACAACTCT+GGG - chr7_1:14119089-14119108 None:intergenic 30.0%
TTTCTTTACCAATACAACTC+TGG - chr7_1:14119090-14119109 None:intergenic 30.0%
ACAAATTGGAGCATATTATG+TGG + chr7_1:14119197-14119216 Msa1010810:CDS 30.0%
CAAATTGGAGCATATTATGT+GGG + chr7_1:14119198-14119217 Msa1010810:CDS 30.0%
! ATTCGAGAATACGAATCTTT+TGG + chr7_1:14119235-14119254 Msa1010810:CDS 30.0%
ACTTAAGGAAGCCATTAAAA+TGG + chr7_1:14119568-14119587 Msa1010810:CDS 30.0%
! GTTTGGCAATTCCATTTTAA+TGG - chr7_1:14119582-14119601 None:intergenic 30.0%
! ATTTTGCATATGGCATATTG+TGG + chr7_1:14119613-14119632 Msa1010810:CDS 30.0%
!!! AAGTTGGTTTTCTTTTGCAT+TGG + chr7_1:14119646-14119665 Msa1010810:CDS 30.0%
!!! AGTTGGTTTTCTTTTGCATT+GGG + chr7_1:14119647-14119666 Msa1010810:CDS 30.0%
CTTTAAACAAGAGTTTCACA+TGG + chr7_1:14119685-14119704 Msa1010810:CDS 30.0%
! TCTTTTCCAATCGTGAATTT+TGG + chr7_1:14119801-14119820 Msa1010810:CDS 30.0%
! CTTTTCCAATCGTGAATTTT+GGG + chr7_1:14119802-14119821 Msa1010810:CDS 30.0%
TAGATAACTCAATCTCATGT+TGG - chr7_1:14120187-14120206 None:intergenic 30.0%
CAACATCATACAAAAGTTGA+CGG + chr7_1:14120251-14120270 Msa1010810:CDS 30.0%
!! GAAAAGGGAGATATTTTGAA+GGG - chr7_1:14120403-14120422 None:intergenic 30.0%
ATCACATATTCTTGAGTTTC+TGG - chr7_1:14120608-14120627 None:intergenic 30.0%
ACATCACAAACATCGTTATT+TGG - chr7_1:14120650-14120669 None:intergenic 30.0%
! CCTTTGGATTTTGTAACAAT+GGG - chr7_1:14120680-14120699 None:intergenic 30.0%
! ACCTTTGGATTTTGTAACAA+TGG - chr7_1:14120681-14120700 None:intergenic 30.0%
TTGTTACAAAATCCAAAGGT+CGG + chr7_1:14120681-14120700 Msa1010810:CDS 30.0%
! TGAGGCAAATTTTCGTTTTG+TGG - chr7_1:14118515-14118534 None:intergenic 35.0%
CTCATGTCAGTAACATTGAT+GGG + chr7_1:14118531-14118550 Msa1010810:CDS 35.0%
! ACCCATCTGGTCTTTATAAA+AGG + chr7_1:14118690-14118709 Msa1010810:CDS 35.0%
! CCCTTTTATAAAGACCAGAT+GGG - chr7_1:14118694-14118713 None:intergenic 35.0%
! CCCATCTGGTCTTTATAAAA+GGG + chr7_1:14118691-14118710 Msa1010810:CDS 35.0%
! TCCCTTTTATAAAGACCAGA+TGG - chr7_1:14118695-14118714 None:intergenic 35.0%
TAATTGTGGTGCAAAGATGT+TGG + chr7_1:14118799-14118818 Msa1010810:CDS 35.0%
!! CAATTGGCTTTGAGGAAAAA+TGG + chr7_1:14118834-14118853 Msa1010810:CDS 35.0%
ATCCTATTGTTGTCAAAAGC+TGG + chr7_1:14118962-14118981 Msa1010810:CDS 35.0%
! AACCAGCTTTTGACAACAAT+AGG - chr7_1:14118967-14118986 None:intergenic 35.0%
AATCGTTATGATATGCCACT+TGG + chr7_1:14119292-14119311 Msa1010810:CDS 35.0%
! ATGATATGCCACTTGGAATA+TGG + chr7_1:14119299-14119318 Msa1010810:CDS 35.0%
! TGATATGCCACTTGGAATAT+GGG + chr7_1:14119300-14119319 Msa1010810:CDS 35.0%
! CACGGAAATTCGATTTTCTT+TGG + chr7_1:14119337-14119356 Msa1010810:CDS 35.0%
! ATTTTCCTTGGACAAAAGCT+AGG - chr7_1:14119514-14119533 None:intergenic 35.0%
TTTAATGGCTTCCTTAAGTG+CGG - chr7_1:14119567-14119586 None:intergenic 35.0%
CAAAATGCATGCTTTGTGTT+TGG - chr7_1:14119599-14119618 None:intergenic 35.0%
! CAAAGCATGCATTTTGCATA+TGG + chr7_1:14119603-14119622 Msa1010810:CDS 35.0%
! GGTGTATCATTTAGAATGTG+CGG + chr7_1:14119706-14119725 Msa1010810:CDS 35.0%
!! TGCACAATTTGATTTGTGCA+AGG + chr7_1:14119760-14119779 Msa1010810:CDS 35.0%
TGGAAAAGAGCAAGTCAATA+TGG - chr7_1:14119790-14119809 None:intergenic 35.0%
TAATGCCCAAAATTCACGAT+TGG - chr7_1:14119810-14119829 None:intergenic 35.0%
! TTGGGCATTAGCTTATTTGA+AGG + chr7_1:14119820-14119839 Msa1010810:CDS 35.0%
!! TTGAAGGACTTTTTCTTTGC+TGG + chr7_1:14119836-14119855 Msa1010810:CDS 35.0%
!! TGAAGGACTTTTTCTTTGCT+GGG + chr7_1:14119837-14119856 Msa1010810:CDS 35.0%
!! TTGGTGTTGCTGTCAAAATT+AGG + chr7_1:14120042-14120061 Msa1010810:CDS 35.0%
GTCAAAATTAGGAATCAAGC+TGG + chr7_1:14120053-14120072 Msa1010810:CDS 35.0%
! GGAAAACATGTACTGATATG+AGG - chr7_1:14120113-14120132 None:intergenic 35.0%
! CAGTACATGTTTTCCTATTG+AGG + chr7_1:14120118-14120137 Msa1010810:CDS 35.0%
ATCATACAAAAGTTGACGGT+GGG + chr7_1:14120255-14120274 Msa1010810:CDS 35.0%
! ACATGCTATTTGTGTGCTAA+TGG + chr7_1:14120358-14120377 Msa1010810:CDS 35.0%
!! CGAAAAGGGAGATATTTTGA+AGG - chr7_1:14120404-14120423 None:intergenic 35.0%
! CAAAATATCTCCCTTTTCGA+TGG + chr7_1:14120405-14120424 Msa1010810:CDS 35.0%
TTTCTTGTCTCCATCGAAAA+GGG - chr7_1:14120418-14120437 None:intergenic 35.0%
TTGACTACATGGCTAGATTT+GGG - chr7_1:14120452-14120471 None:intergenic 35.0%
CAGAGATTGAAACTTAGTAG+AGG - chr7_1:14120489-14120508 None:intergenic 35.0%
! TCAATCTCTGATTCGATGTT+TGG + chr7_1:14120499-14120518 Msa1010810:CDS 35.0%
CCCATTGTTACAAAATCCAA+AGG + chr7_1:14120677-14120696 Msa1010810:CDS 35.0%
TACTTATTAGGGGATTGAGA+AGG - chr7_1:14120839-14120858 None:intergenic 35.0%
! TGGTAGTGATTGGCAATCTA+AGG + chr7_1:14118424-14118443 Msa1010810:CDS 40.0%
CCATCAATGTTACTGACATG+AGG - chr7_1:14118533-14118552 None:intergenic 40.0%
CCTCATGTCAGTAACATTGA+TGG + chr7_1:14118530-14118549 Msa1010810:CDS 40.0%
! TGTCAGTAACATTGATGGGT+TGG + chr7_1:14118535-14118554 Msa1010810:CDS 40.0%
!!! ATGGGTTGGTTCCTTTTGAA+GGG + chr7_1:14118549-14118568 Msa1010810:CDS 40.0%
GAGTCTAAAAAGAACCCATC+TGG + chr7_1:14118677-14118696 Msa1010810:CDS 40.0%
! AGGGAATTTGTTTGTCATCG+TGG + chr7_1:14118710-14118729 Msa1010810:CDS 40.0%
! GAATTTGTTTGTCATCGTGG+TGG + chr7_1:14118713-14118732 Msa1010810:CDS 40.0%
ACAACGCAACATTAACGAAG+TGG + chr7_1:14118745-14118764 Msa1010810:CDS 40.0%
ATACGACTTTGATCAGCAGT+TGG - chr7_1:14118944-14118963 None:intergenic 40.0%
ATTCGATCCCAGAGTTGTAT+TGG + chr7_1:14119079-14119098 Msa1010810:CDS 40.0%
GAGCATATTATGTGGGCATT+TGG + chr7_1:14119205-14119224 Msa1010810:CDS 40.0%
!! TGGGTTGGTGTTGATAATCA+CGG + chr7_1:14119319-14119338 Msa1010810:CDS 40.0%
AGAAGATTTCTTCCTTTGCG+TGG + chr7_1:14119380-14119399 Msa1010810:CDS 40.0%
GAAGATTTCTTCCTTTGCGT+GGG + chr7_1:14119381-14119400 Msa1010810:CDS 40.0%
!! AACTTCCTAGCTTTTGTCCA+AGG + chr7_1:14119506-14119525 Msa1010810:CDS 40.0%
TTAATGGCTTCCTTAAGTGC+GGG - chr7_1:14119566-14119585 None:intergenic 40.0%
TTGTGGCAAAGTTGTCAAGT+TGG + chr7_1:14119630-14119649 Msa1010810:CDS 40.0%
CGAAAGAGAGTGGAAATCAA+TGG + chr7_1:14119736-14119755 Msa1010810:CDS 40.0%
GATGCAACATGTTCCTCAAT+AGG - chr7_1:14120134-14120153 None:intergenic 40.0%
! TGGAGCAACTTAAAGGCATA+TGG - chr7_1:14120167-14120186 None:intergenic 40.0%
CTCATGTTGGAGCAACTTAA+AGG - chr7_1:14120174-14120193 None:intergenic 40.0%
GCAGCAACTGAAATTGACAA+TGG + chr7_1:14120215-14120234 Msa1010810:CDS 40.0%
CATCATACAAAAGTTGACGG+TGG + chr7_1:14120254-14120273 Msa1010810:CDS 40.0%
!! AAGGGAGATATTTTGAAGGG+AGG - chr7_1:14120400-14120419 None:intergenic 40.0%
CTTTCTTGTCTCCATCGAAA+AGG - chr7_1:14120419-14120438 None:intergenic 40.0%
TGACTACATGGCTAGATTTG+GGG - chr7_1:14120451-14120470 None:intergenic 40.0%
GTTGACTACATGGCTAGATT+TGG - chr7_1:14120453-14120472 None:intergenic 40.0%
TAGCATTGCAGTTGACTACA+TGG - chr7_1:14120463-14120482 None:intergenic 40.0%
! TGATTAGTTCCACCACAACT+TGG - chr7_1:14120770-14120789 None:intergenic 40.0%
!!! GATGGGTTGGTTCCTTTTGA+AGG + chr7_1:14118548-14118567 Msa1010810:CDS 45.0%
!! TGGCTTTGAGGAAAAATGGG+TGG + chr7_1:14118838-14118857 Msa1010810:CDS 45.0%
GTTGGAATGTTGCGATAAGC+AGG - chr7_1:14118926-14118945 None:intergenic 45.0%
! ATGCCACTTGGAATATGGGT+TGG + chr7_1:14119304-14119323 Msa1010810:CDS 45.0%
ACACCAACCCATATTCCAAG+TGG - chr7_1:14119310-14119329 None:intergenic 45.0%
! TTCCTTTGCGTGGGCTTTAA+AGG + chr7_1:14119390-14119409 Msa1010810:CDS 45.0%
!! TACCTTTAAAGCCCACGCAA+AGG - chr7_1:14119395-14119414 None:intergenic 45.0%
AGATCAAGATCCCGCACTTA+AGG + chr7_1:14119553-14119572 Msa1010810:CDS 45.0%
CGGATGATTTCGAAAGAGAG+TGG + chr7_1:14119726-14119745 Msa1010810:CDS 45.0%
TTTGCTGGGATGACAACAAC+AGG + chr7_1:14119851-14119870 Msa1010810:CDS 45.0%
TTGCTGGGATGACAACAACA+GGG + chr7_1:14119852-14119871 Msa1010810:CDS 45.0%
TAGGAATCAAGCTGGAGAAG+AGG + chr7_1:14120061-14120080 Msa1010810:CDS 45.0%
AGAGAACGAGTTGCTACTAG+AGG + chr7_1:14120548-14120567 Msa1010810:CDS 45.0%
!!! CCTTTTGGTCTTGATCCTCT+TGG - chr7_1:14120707-14120726 None:intergenic 45.0%
CCAAGAGGATCAAGACCAAA+AGG + chr7_1:14120704-14120723 Msa1010810:CDS 45.0%
AGAGGATCAAGACCAAAAGG+AGG + chr7_1:14120707-14120726 Msa1010810:CDS 45.0%
TGTCATGTTCCAAGTTGTGG+TGG + chr7_1:14120758-14120777 Msa1010810:CDS 45.0%
AAATCCAAAGGTCGGCCAAG+AGG + chr7_1:14120689-14120708 Msa1010810:CDS 50.0%
! GCAGCTTCAACTCCTCCTTT+TGG - chr7_1:14120722-14120741 None:intergenic 50.0%
GAGGAGTTGAAGCTGCAAAG+AGG + chr7_1:14120726-14120745 Msa1010810:CDS 50.0%
CGCTGTCATGTTCCAAGTTG+TGG + chr7_1:14120755-14120774 Msa1010810:CDS 50.0%
ACGGTGGGCGTCAAGTAAGT+TGG + chr7_1:14120270-14120289 Msa1010810:CDS 55.0%
TGATCCTCTTGGCCGACCTT+TGG - chr7_1:14120696-14120715 None:intergenic 55.0%
CTTGGAACATGACAGCGACG+AGG - chr7_1:14120752-14120771 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 14118401 14120859 14118401 ID=Msa1010810;Name=Msa1010810
chr7_1 mRNA 14118401 14120859 14118401 ID=Msa1010810-mRNA-1;Parent=Msa1010810;Name=Msa1010810-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0.5|0|1|1|1|3|0|757
chr7_1 exon 14118401 14119411 14118401 ID=Msa1010810-mRNA-1:exon:3653;Parent=Msa1010810-mRNA-1
chr7_1 exon 14119506 14119949 14119506 ID=Msa1010810-mRNA-1:exon:3654;Parent=Msa1010810-mRNA-1
chr7_1 exon 14120041 14120859 14120041 ID=Msa1010810-mRNA-1:exon:3655;Parent=Msa1010810-mRNA-1
chr7_1 CDS 14118401 14119411 14118401 ID=Msa1010810-mRNA-1:cds;Parent=Msa1010810-mRNA-1
chr7_1 CDS 14119506 14119949 14119506 ID=Msa1010810-mRNA-1:cds;Parent=Msa1010810-mRNA-1
chr7_1 CDS 14120041 14120859 14120041 ID=Msa1010810-mRNA-1:cds;Parent=Msa1010810-mRNA-1
Gene Sequence

>Msa1010810

ATGATGTCTGAAGAAAATAATGATGGTAGTGATTGGCAATCTAAGGTTCTTAAAGATTATTCTTCTATATGTGTAGATGATGAATATATAAATTCATTAACATTTCAAGAGCCACAAAACGAAAATTTGCCTCATGTCAGTAACATTGATGGGTTGGTTCCTTTTGAAGGGCAAATATTTAGTAATGATGGTGATGCTTATGAATTTTATTCTTTATTTGCACGAAAAAATGGATTTTCGATCAGGCGCGAACACATTTACAAATCTTGTACAAACGAGTCTAAAAAGAACCCATCTGGTCTTTATAAAAGGGAATTTGTTTGTCATCGTGGTGGTATTGTTAAACAACGCAACATTAACGAAGTGGAATGTAAAAGAAAACAAAAATCTTCAAAATGTAATTGTGGTGCAAAGATGTTGGTTGCTATAAAAACAATTGGCTTTGAGGAAAAATGGGTGGTTATATATTTCAACAATCATCACAATCATGAGTTATTGGATGAAAAAGAGGTTCAATTTCTTCCTGCTTATCGCAACATTCCAACTGCTGATCAAAGTCGTATCCTATTGTTGTCAAAAGCTGGTTGCTCTATAAGTATTATAATGAGAGTGCTTGAGTTAGAGAAAAAAATAGTTACAGGCAATCTACCTTTTCTAGAAAGAGATATTCGAAATTTTATTCGATCCCAGAGTTGTATTGGTAAAGAAAATGATGCTTCTGATGTTCTCAAATTATGCAAAAATTTGAAAGATATTGATGATGCCTTCAAATATGAATTCACTATTGATGAATGTAACAAATTGGAGCATATTATGTGGGCATTTGGTGATTCAATTCGAGAATACGAATCTTTTGGAGATGTTGTAGTTTTTGATACCACGTATAGAATAAATCGTTATGATATGCCACTTGGAATATGGGTTGGTGTTGATAATCACGGAAATTCGATTTTCTTTGGTTGTGTTCTATTGAAGAATGAGAAGATTTCTTCCTTTGCGTGGGCTTTAAAGAACTTCCTAGCTTTTGTCCAAGGAAAATATCCAAAAACTATTCTTACAGATCAAGATCCCGCACTTAAGGAAGCCATTAAAATGGAATTGCCAAACACAAAGCATGCATTTTGCATATGGCATATTGTGGCAAAGTTGTCAAGTTGGTTTTCTTTTGCATTGGGTTCAAGATATAATGACTTTAAACAAGAGTTTCACATGGTGTATCATTTAGAATGTGCGGATGATTTCGAAAGAGAGTGGAAATCAATGGTTGCACAATTTGATTTGTGCAAGGATAACCATATTGACTTGCTCTTTTCCAATCGTGAATTTTGGGCATTAGCTTATTTGAAGGACTTTTTCTTTGCTGGGATGACAACAACAGGGCGCTCAGAATCAATAAATGCATATATAAAAAGATTCTTAGGCGCCAATACAAGTTTGACAGATTTTGTAAATCAAGTTGGTGTTGCTGTCAAAATTAGGAATCAAGCTGGAGAAGAGGCAAGAATGCGTCAAAAGTATCACAATCCTCATATCAGTACATGTTTTCCTATTGAGGAACATGTTGCATCTGTACTCACGCCATATGCCTTTAAGTTGCTCCAACATGAGATTGAGTTATCTACAAAATATGCAGCAACTGAAATTGACAATGGTTCTTATATTGTGCAACATCATACAAAAGTTGACGGTGGGCGTCAAGTAAGTTGGATAGTAGAAAAAGAGTCAATTCATTGCTCTTGTAAAGAATTTGAGTTTTCTGGAATATTATGCAGACATGCTATTTGTGTGCTAATGGTGAAAAATTATTTTAGCCTCCCTTCAAAATATCTCCCTTTTCGATGGAGACAAGAAAGTTCATTGATCCCCAAATCTAGCCATGTAGTCAACTGCAATGCTACTTCCTCTACTAAGTTTCAATCTCTGATTCGATGTTTGGAAGTTGAATCATTAAAGACAAGCGAAAGAGAACGAGTTGCTACTAGAGGATTAGAAAAAGTCATTCAAGATATAAAAGGCATGCCAGAAACTCAAGAATATGTGATTGATTTGGAACATGATGCTCCAAATAACGATGTTTGTGATGTTGAAAATCCCATTGTTACAAAATCCAAAGGTCGGCCAAGAGGATCAAGACCAAAAGGAGGAGTTGAAGCTGCAAAGAGGCCTCGTCGCTGTCATGTTCCAAGTTGTGGTGGAACTAATCATGACTCACGAAATTGTCCAAACAAAAAGAAAAAAATTGAAGTATTGCCTTCTCAATCCCCTAATAAGTAA
Protein sequence

>Msa1010810

MMSEENNDGSDWQSKVLKDYSSICVDDEYINSLTFQEPQNENLPHVSNIDGLVPFEGQIFSNDGDAYEFYSLFARKNGFSIRREHIYKSCTNESKKNPSGLYKREFVCHRGGIVKQRNINEVECKRKQKSSKCNCGAKMLVAIKTIGFEEKWVVIYFNNHHNHELLDEKEVQFLPAYRNIPTADQSRILLLSKAGCSISIIMRVLELEKKIVTGNLPFLERDIRNFIRSQSCIGKENDASDVLKLCKNLKDIDDAFKYEFTIDECNKLEHIMWAFGDSIREYESFGDVVVFDTTYRINRYDMPLGIWVGVDNHGNSIFFGCVLLKNEKISSFAWALKNFLAFVQGKYPKTILTDQDPALKEAIKMELPNTKHAFCIWHIVAKLSSWFSFALGSRYNDFKQEFHMVYHLECADDFEREWKSMVAQFDLCKDNHIDLLFSNREFWALAYLKDFFFAGMTTTGRSESINAYIKRFLGANTSLTDFVNQVGVAVKIRNQAGEEARMRQKYHNPHISTCFPIEEHVASVLTPYAFKLLQHEIELSTKYAATEIDNGSYIVQHHTKVDGGRQVSWIVEKESIHCSCKEFEFSGILCRHAICVLMVKNYFSLPSKYLPFRWRQESSLIPKSSHVVNCNATSSTKFQSLIRCLEVESLKTSERERVATRGLEKVIQDIKGMPETQEYVIDLEHDAPNNDVCDVENPIVTKSKGRPRGSRPKGGVEAAKRPRRCHVPSCGGTNHDSRNCPNKKKKIEVLPSQSPNK*