AlfalfaGEDB | Msa1402930

M. sativa cultivar zhongmu-4 / Msa1402930

KEGG: -
GO: -
PFAM: PF04434.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1402930	PNX99521.1	78.516	256	54	1	1	256	405	659	7.93e-139	415

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1402930	sp\|Q9LKR4\|FRS10_ARATH	44.048	168	93	1	4	170	507	674	1.06e-39	148

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1402930	A0A2K3N8Z5	78.516	256	54	1	1	256	405	659	3.79e-139	415

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0102070	Msa1402930	0.810202	1.295797e-50	-8.615850e-47
Msa0232850	Msa1402930	0.831769	1.383780e-55	-8.615850e-47
Msa0267000	Msa1402930	0.808960	2.395273e-50	-8.615850e-47
Msa0267010	Msa1402930	0.807035	6.152363e-50	-8.615850e-47
Msa0384800	Msa1402930	0.808978	2.374218e-50	-8.615850e-47
Msa0414420	Msa1402930	0.801658	8.114001e-49	-8.615850e-47
Msa0452900	Msa1402930	0.820950	5.231141e-53	-8.615850e-47
Msa0694370	Msa1402930	0.806144	9.485408e-50	-8.615850e-47
Msa0726140	Msa1402930	0.807503	4.896091e-50	-8.615850e-47
Msa0745060	Msa1402930	0.802614	5.161302e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1402930	MtrunA17_Chr1g0198761	73.047	256	69	0	1	256	495	750	1.31e-135	399
Msa1402930	MtrunA17_Chr5g0430921	80.000	85	17	0	172	256	1	85	1.19e-44	145
Msa1402930	MtrunA17_Chr2g0290391	47.429	175	82	3	9	175	504	676	2.56e-42	152
Msa1402930	MtrunA17_Chr2g0294841	33.977	259	147	4	1	239	491	745	1.01e-40	149
Msa1402930	MtrunA17_Chr2g0276841	42.197	173	94	3	1	170	513	682	7.94e-39	143
Msa1402930	MtrunA17_Chr5g0440451	29.825	171	109	4	7	170	489	655	1.05e-15	76.6
Msa1402930	MtrunA17_Chr5g0448511	37.838	111	65	1	7	113	282	392	4.04e-15	74.7
Msa1402930	MtrunA17_Chr5g0448761	31.618	136	85	2	8	135	511	646	8.94e-14	70.9
Msa1402930	MtrunA17_Chr1g0202341	28.108	185	120	4	8	183	495	675	3.17e-13	68.9
Msa1402930	MtrunA17_Chr3g0118611	37.273	110	65	2	8	113	387	496	6.86e-13	68.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1402930	AT5G28530.5	44.048	168	93	1	4	170	440	607	6.06e-41	149
Msa1402930	AT5G28530.4	44.048	168	93	1	4	170	444	611	6.52e-41	149
Msa1402930	AT5G28530.3	44.048	168	93	1	4	170	503	670	1.04e-40	148
Msa1402930	AT5G28530.2	44.048	168	93	1	4	170	503	670	1.04e-40	148
Msa1402930	AT5G28530.1	44.048	168	93	1	4	170	507	674	1.08e-40	148
Msa1402930	AT1G10240.2	43.103	174	91	3	1	170	491	660	1.19e-39	145
Msa1402930	AT1G10240.1	43.103	174	91	3	1	170	491	660	1.19e-39	145
Msa1402930	AT4G38170.1	37.607	117	69	2	7	119	284	400	5.51e-15	74.7
Msa1402930	AT2G27110.2	31.579	152	94	5	8	153	465	612	4.46e-12	66.2
Msa1402930	AT2G27110.1	31.579	152	94	5	8	153	465	612	4.46e-12	66.2

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Find 39 sgRNAs with CRISPR-Local

Find 92 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTCATTCAAGATATAAA+AGG	0.358979	tig0022949:-34860	Msa1402930:CDS
AAATCCAAAGGTCGGCCAAG+AGG	0.639624	tig0022949:-34749	Msa1402930:CDS
AATCCAAACTTACTTATTAG+GGG	0.596179	tig0022949:+34592	Msa1402930:intergenic
ACATGTTATTCGTGTGCTAA+TGG	0.458320	tig0022949:-35080	Msa1402930:CDS
AGAGAACGAGTTGCTACTAG+AGG	0.645909	tig0022949:-34890	Msa1402930:CDS
AGAGGATCAAGACCAAAAGG+AGG	0.673931	tig0022949:-34731	Msa1402930:CDS
ATCATACAAAAGTTGATGGT+GGG	0.568308	tig0022949:-35183	Msa1402930:CDS
ATGGTGGGCGTCAAGTAAGT+TGG	0.528714	tig0022949:-35168	Msa1402930:CDS
CAACATCATACAAAAGTTGA+TGG	0.542659	tig0022949:-35187	Msa1402930:CDS
CAATCCAAACTTACTTATTA+GGG	0.237365	tig0022949:+34591	Msa1402930:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAGATAACTCAATCTCATGT+TGG	+	tig0022949:34699-34718	Msa1402930:intergenic	30.0%
CAACATCATACAAAAGTTGA+TGG	-	tig0022949:34763-34782	Msa1402930:CDS	30.0%
TTGTTACAAAATCCAAAGGT+CGG	-	tig0022949:35193-35212	Msa1402930:CDS	30.0%
TAGATAACTCAATCTCATGT+TGG	+	tig0022949:34699-34718	Msa1402930:intergenic	30.0%
CAACATCATACAAAAGTTGA+TGG	-	tig0022949:34763-34782	Msa1402930:CDS	30.0%
TTGTTACAAAATCCAAAGGT+CGG	-	tig0022949:35193-35212	Msa1402930:CDS	30.0%
GGAAAACATGTTCTGATATG+AGG	+	tig0022949:34625-34644	None:intergenic	35.0%
ACATGTTATTCGTGTGCTAA+TGG	-	tig0022949:34870-34889	Msa1402930:CDS	35.0%
TTTCTTGTCTCCATCGAAAA+GGG	+	tig0022949:34930-34949	Msa1402930:intergenic	35.0%
TTGACTACATGGCTAGATTT+GGG	+	tig0022949:34964-34983	Msa1402930:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0022949	gene	34601	35371	34601	ID=Msa1402930;Name=Msa1402930
tig0022949	mRNA	34601	35371	34601	ID=Msa1402930-mRNA-1;Parent=Msa1402930;Name=Msa1402930-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|256
tig0022949	exon	34601	35371	34601	ID=Msa1402930-mRNA-1:exon:19138;Parent=Msa1402930-mRNA-1
tig0022949	CDS	34601	35371	34601	ID=Msa1402930-mRNA-1:cds;Parent=Msa1402930-mRNA-1

Gene Sequence

>Msa1402930

ATGCGTCAAAAGTATCACAATCCTCATATCAGAACATGTTTTCCTATTGAGGAACATGCTGCATCTGTACTCACGCCATATGCCTTTAAGTTGCTCCAACATGAGATTGAGTTATCTACAAAATATGCAGCAACTGAAATTGACAATGGTTCTTATATTGTGCAACATCATACAAAAGTTGATGGTGGGCGTCAAGTAAGTTGGATAGTAGAAAACGAGTCAATTCATTGCTCTTGTAAAGAATTTGAGTTTTCTGGAATATTATGCAGACATGTTATTCGTGTGCTAATGGTGAAAAATTATTTTAGCCTCCCTTCAAAATATCTCCCTTTTCGATGGAGACAAGAAAGTTCATTGATCCCCAAATCTAGCCATGTAGTCAACTGCAATGCTACTTCCTCTACTAAGTTTCAATCTCTGATTCGATGTTTGGAAGTTGAATCATTAAAGACAAGCGAAAGAGAACGAGTTGCTACTAGAGGATTAGAAAAAGTCATTCAAGATATAAAAGGCATGCTAGAAACTCAAGAATATGTGATTGATTTGGAACATGATGCTCCAAATAACAATGTTTGTGATGATGAAAATCCCATTGTTACAAAATCCAAAGGTCGGCCAAGAGGATCAAGACCAAAAGGAGGAGTTGAAGCTGCAAAGAGGCCTCGTCGCTGTCATGTTCCAAGTTGTGGTGGAACTAATCATGACTCACGAAATTGTCCAAACAAAAAGAAAAAAATTGAAGTATTGCCTTCTCAATCCCCTAATAAGTAA

Protein sequence

>Msa1402930

MRQKYHNPHIRTCFPIEEHAASVLTPYAFKLLQHEIELSTKYAATEIDNGSYIVQHHTKVDGGRQVSWIVENESIHCSCKEFEFSGILCRHVIRVLMVKNYFSLPSKYLPFRWRQESSLIPKSSHVVNCNATSSTKFQSLIRCLEVESLKTSERERVATRGLEKVIQDIKGMLETQEYVIDLEHDAPNNNVCDDENPIVTKSKGRPRGSRPKGGVEAAKRPRRCHVPSCGGTNHDSRNCPNKKKKIEVLPSQSPNK*