AlfalfaGEDB | Msa1011420

M. sativa cultivar zhongmu-4 / Msa1011420

KEGG: K00164
GO: GO:0003674 GO:0003824 GO:0004591 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005947 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0009060 GO:0009353 GO:0009987 GO:0015980 GO:0016491 GO:0016624 GO:0016903 GO:0016999 GO:0017144 GO:0019752 GO:0030062 GO:0031974 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045239 GO:0045240 GO:0045252 GO:0045333 GO:0055114 GO:0070013 GO:0071704 GO:0072350 GO:0098798 GO:1902494 GO:1990204 GO:1990234
PFAM: PF16078.8

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1011420	XP_003621819.2	99.609	1023	4	0	1	1023	1	1023	0.0	2135

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1011420	sp\|Q54JE4\|ODO1_DICDI	52.033	984	428	8	60	1014	38	1006	0.0	1057

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1011420	G7KVS0	99.609	1023	4	0	1	1023	1	1023	0.0	2135

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0048070	Msa1011420	0.938399	7.179785e-99	-8.615850e-47
Msa0511150	Msa1011420	0.841017	6.129533e-58	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1011420	MtrunA17_Chr7g0222951	99.609	1023	4	0	1	1023	1	1023	0.0	2135
Msa1011420	MtrunA17_Chr1g0212551	87.220	1025	127	3	1	1023	1	1023	0.0	1899

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1011420	AT5G65750.1	82.796	1023	171	3	1	1020	1	1021	1825
Msa1011420	AT3G55410.2	82.779	1022	169	5	1	1020	1	1017	1818
Msa1011420	AT3G55410.1	82.779	1022	169	5	1	1020	1	1017	1818

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Find 294 sgRNAs with CRISPR-Local

Find 470 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGATTCAAGAGAGTATG+AGG	0.529092	7_1:-15616844	Msa1011420:CDS
AAATGACCACTCCACTGTTG+AGG	0.595043	7_1:-15612738	Msa1011420:CDS
AAATTCTTCATTTAGAATTG+AGG	0.451925	7_1:+15615427	None:intergenic
AACGGAACCGCCCGCGGAAC+CGG	0.373116	7_1:+15617028	None:intergenic
AACTCTTCGGAAACAGATTC+AGG	0.441296	7_1:-15613070	Msa1011420:CDS
AACTTTCTACCATGTGTTGA+TGG	0.423242	7_1:+15617082	None:intergenic
AAGAGGTTTGGGCTTGAAGG+AGG	0.528991	7_1:-15616401	Msa1011420:CDS
AAGATTGGAACGCTTTCTTC+AGG	0.471894	7_1:-15613775	Msa1011420:intron
AATCTATCAGAAGAAGCTTT+TGG	0.278042	7_1:-15615501	Msa1011420:CDS
AATCTTGCACTTGAATGCTC+AGG	0.404835	7_1:+15613792	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTTCATCATATCTTGTATCT+AGG	-	chr7_1:15612098-15612117	Msa1011420:CDS	30.0%
TCAAACATTTCTTTCATACC+AGG	+	chr7_1:15612853-15612872	None:intergenic	30.0%
TGATAGATTTCAAGAGTTGA+AGG	+	chr7_1:15613703-15613722	None:intergenic	30.0%
ACATTCCAAAAAGAAGAGAT+TGG	-	chr7_1:15613827-15613846	Msa1011420:CDS	30.0%
TCAATATAACATTGTCAAGG+GGG	+	chr7_1:15614284-15614303	None:intergenic	30.0%
ATATCTATCTTGTCTATGTC+AGG	-	chr7_1:15614348-15614367	Msa1011420:intron	30.0%
AGCTTATATCTAAGGAAATC+AGG	+	chr7_1:15614399-15614418	None:intergenic	30.0%
GAATGCATGATAACTGTTTA+GGG	+	chr7_1:15614501-15614520	None:intergenic	30.0%
TCGTTAATATGATCTGCATT+TGG	-	chr7_1:15614781-15614800	Msa1011420:intron	30.0%
AATATGATCTGCATTTGGAA+CGG	-	chr7_1:15614786-15614805	Msa1011420:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	15611661	15617576	15611661	ID=Msa1011420;Name=Msa1011420
chr7_1	mRNA	15611661	15617576	15611661	ID=Msa1011420-mRNA-1;Parent=Msa1011420;Name=Msa1011420-mRNA-1;_AED=0.03;_eAED=0.03;_QI=193\|1\|1\|1\|0.87\|0.77\|9\|334\|1023
chr7_1	exon	15611661	15612233	15611661	ID=Msa1011420-mRNA-1:exon:4050;Parent=Msa1011420-mRNA-1
chr7_1	exon	15612466	15612589	15612466	ID=Msa1011420-mRNA-1:exon:4049;Parent=Msa1011420-mRNA-1
chr7_1	exon	15612703	15612918	15612703	ID=Msa1011420-mRNA-1:exon:4048;Parent=Msa1011420-mRNA-1
chr7_1	exon	15613005	15613133	15613005	ID=Msa1011420-mRNA-1:exon:4047;Parent=Msa1011420-mRNA-1
chr7_1	exon	15613776	15614022	15613776	ID=Msa1011420-mRNA-1:exon:4046;Parent=Msa1011420-mRNA-1
chr7_1	exon	15614900	15615232	15614900	ID=Msa1011420-mRNA-1:exon:4045;Parent=Msa1011420-mRNA-1
chr7_1	exon	15615326	15615552	15615326	ID=Msa1011420-mRNA-1:exon:4044;Parent=Msa1011420-mRNA-1
chr7_1	exon	15615653	15617265	15615653	ID=Msa1011420-mRNA-1:exon:4043;Parent=Msa1011420-mRNA-1
chr7_1	exon	15617440	15617576	15617440	ID=Msa1011420-mRNA-1:exon:4042;Parent=Msa1011420-mRNA-1
chr7_1	five_prime_UTR	15617440	15617576	15617440	ID=Msa1011420-mRNA-1:five_prime_utr;Parent=Msa1011420-mRNA-1
chr7_1	five_prime_UTR	15617210	15617265	15617210	ID=Msa1011420-mRNA-1:five_prime_utr;Parent=Msa1011420-mRNA-1
chr7_1	CDS	15615653	15617209	15615653	ID=Msa1011420-mRNA-1:cds;Parent=Msa1011420-mRNA-1
chr7_1	CDS	15615326	15615552	15615326	ID=Msa1011420-mRNA-1:cds;Parent=Msa1011420-mRNA-1
chr7_1	CDS	15614900	15615232	15614900	ID=Msa1011420-mRNA-1:cds;Parent=Msa1011420-mRNA-1
chr7_1	CDS	15613776	15614022	15613776	ID=Msa1011420-mRNA-1:cds;Parent=Msa1011420-mRNA-1
chr7_1	CDS	15613005	15613133	15613005	ID=Msa1011420-mRNA-1:cds;Parent=Msa1011420-mRNA-1
chr7_1	CDS	15612703	15612918	15612703	ID=Msa1011420-mRNA-1:cds;Parent=Msa1011420-mRNA-1
chr7_1	CDS	15612466	15612589	15612466	ID=Msa1011420-mRNA-1:cds;Parent=Msa1011420-mRNA-1
chr7_1	CDS	15611995	15612233	15611995	ID=Msa1011420-mRNA-1:cds;Parent=Msa1011420-mRNA-1
chr7_1	three_prime_UTR	15611661	15611994	15611661	ID=Msa1011420-mRNA-1:three_prime_utr;Parent=Msa1011420-mRNA-1

Gene Sequence

>Msa1011420

ATGGCATGGTTTAGAGCTGGTGCTAGTATAGCAAAAAATGCTATAAAACGAACCATTTCACAAAACAGATCTTCATCATATCTTGTATCTAGGTCAAGAATTTTACCATCAACACATGGTAGAAAGTTTCATACAACTGTTTTTAAGCAGCAAGCTGCACCGGTTCCGCGGGCGGTTCCGTTATCGCGGTTGACAGACAGTTTTTTAGATGGGACTAGTAGTGTGTATTTGGAGGAGTTGCAGAGGGCATGGGAGGCTGACCCGAATAGTGTTGACGAGTCGTGGGATAATTTCTTTAGGAATTTTGTTGGGCAAGCGAGTACGTCGCCTGGGATATCGGGGCAAACGATTCAAGAGAGTATGAGGTTGTTGTTGATGGTTAGGGCTTATCAGGTTAATGGACATATGAAGGCGAAGTTGGATCCGTTGAATTTGGAAGCGAGGCAGATACCGGATGATTTGGATCCGGCGCTTTATGGGTTTAGTGAGGCAGATCTTGATAGGGAGTTTTTTTTGGGTGTTTGGAGGATGGCGGGTTTTTTGTCTGAGAATAGGCCTGTTCAGACGCTTAGGTCGATTTTGACGAGGCTTGAGCAGGCTTATTGTGGGAGTATTGGGTTTGAGTATATGCATATTTCGGATCGTGAGAAGTGTAATTGGCTTAGGGATAAAATTGAGACACCTACACCGGTGCAGTTTAACAGGGAGCGTCGTGAGGCTATATTTGATAGGCTTGCTTGGAGTTCGTTGTTTGAGAATTTTTTGGCTACCAAGTGGACTTCCGCGAAGAGGTTTGGGCTTGAAGGAGGGGAGACTCTTATTCCTGGTATGAAAGAAATGTTTGATCGAGCATCTGATCTTGGGGTTGAGAGCATAGTTATTGGAATGGCACACAGGGGAAGATTGAATGTTTTGGGTAATGTAGTCCGGAAGCCGCTGCGTCAGATCTTTTGTGAGTTCAGTGGTGGTCTCTCGCCTGAGGATGAAGTTGGGCTTTACACGGGAACTGGTGATGTTAAGTATCACTTGGGAACGTCTTATGATCGCCCTACTAGAGGTGGCAAGAGGATACATTTGTCTTTGGTGGCAAATCCTAGTCACTTGGAAGCTGTCGACCCCGTTGTTGTTGGGAAAACTCGAGCTAAGCAGTATTACTCGAATGACGTGGACAGGACAAAAAACATGGGTATTTTGCTTCATGGAGATGGTAGTTTTGCTGGACAGGGTGTGGTCTATGAAACCCTGCATTTAAGTGCTCTTCCAAATTACACTACGGGTGGAACCATTCACATTGTGTTAAACAATCAAGTTGCTTTTACAACTGATCCAATGTCTGGCAGGTCTTCACAGTATTGCACAGATGTTGCTAAAGCTTTAGATGCTCCCATCTTTCATGTTAACGGTGATGATGTGGAAGCAGTTGTACATGCCTGTGAACTTGCTGCTGAGTGGCGCCAAACGTTCCATTCAGACGTGGTTGTGGACTTGGTGTGTTATCGTCGATTTGGCCACAATGAGATTGACGAACCATCTTTCACACAGCCTAAAATGTACAAGGTCATCAGAAGCCATCCTTCAACTCTTGAAATCTATCAGAAGAAGCTTTTGGAAACAGGGGAGCTGACACAAGATGACATTGACAAGATCCACAAGAAGGTCACCTCAATTCTAAATGAAGAATTTCAAGCTAGCAAAGATTACATTCCAAAAAGAAGAGATTGGCTATCAGCATACTGGCTTGGGTTCAAGTCACCTGAACAGCTTTCCCGTATCCGAAACACTGGCGTGAAACCAGAGATTTTGAAAACTGTTGGGAAAGCAATCACAACTATCCCTGAAAATTTCACACCTCATAAAGCAGTGAAGAGGATTTATGAACAGCGTGCGCAAATGATCGAGACTGGGGAAGATATTGACTGGGGATTTGGAGAGGCACTTGCTTTTGCTACCTTGCTTGTTGAAGGTAACCATGTTCGATTGAGTGGTCAGGATGTTGAAAGAGGAACTTTTAGTCACCGTCACTCAATAGTTCATGATCAGACAACTGGGGAGAAATATTGCCCCCTTGACAATGTTATATTGAATCAAGATGAAGAGATGTTTACTGTTAGCAACAGCTCACTTTCAGAGTTTGCTGTTCTTGGATTTGAATTGGGTTACTCAATGGAAAACCCCAATTCATTGATAATTTGGGAAGCACAATTTGGAGATTTTGCTAATGGGGCTCATGTGATATTTGACAATTTCTTGGCTTCTGGTGAGGCCAAGTGGCTCCGTCAGACTGGGCTAGTTGTGTTGCTTCCTCATGGTTATGATGGCCAGGGCCCTGAGCATTCAAGTGCAAGATTGGAACGCTTTCTTCAGATGGCTGATGACAATCCGTATATTATCCCTGAGATGGATCCAACTCTTCGGAAACAGATTCAGGAGTGTAATTTGCAGATTGTGAATGTCACAACTCCTGCCAACTTTTTCCATGTTCTAAGGAGGCAGATACATAGAGAATTCCGAAAACCTCTCATTGTAATGTCCCCTAAGAACCTGCTTCGTAGCAAGGCTTGCAGATCAAACCTATCAGAGTTCGATGATGTCCAAGGGCACCCAGGTTTTGACAAACAGGGAACCAGATTTAAGCGCCTCATAAAAGACCGAAATGACCACTCCACTGTTGAGGAGGGTATTAGACGTTTAGTACTCTGCTCTGGAAAGGTTTACTATGAACTTGATGATCATCGATCTAAGGTTGATGCATCAGATGTTGCAATATGTAGGGTGGAACAGCTTTGTCCTTTCCCATATGACCTTGTCCAACGAGAACTTAAACGATATCCAAATGCAGAGGTTGTTTGGTGTCAAGAAGAGCCAATGAACATGGGTGGATACACTTACATTTTGCCCCGACTTGTATCTTCCATGAAAGCTGTAGGTAGGGGTGGTTTTGATGATGTCAAATATGTCGGTCGTGCTCCATCTGCTGCCACAGCCACCGGTTTCCTCAAGGTTCACCAGAAGGAGCAAGCTGAGATTGCTGAGAAAGCCCTTCAACGCGAGCCAGTCAACTTCCCATTCTGA

Protein sequence

>Msa1011420

MAWFRAGASIAKNAIKRTISQNRSSSYLVSRSRILPSTHGRKFHTTVFKQQAAPVPRAVPLSRLTDSFLDGTSSVYLEELQRAWEADPNSVDESWDNFFRNFVGQASTSPGISGQTIQESMRLLLMVRAYQVNGHMKAKLDPLNLEARQIPDDLDPALYGFSEADLDREFFLGVWRMAGFLSENRPVQTLRSILTRLEQAYCGSIGFEYMHISDREKCNWLRDKIETPTPVQFNRERREAIFDRLAWSSLFENFLATKWTSAKRFGLEGGETLIPGMKEMFDRASDLGVESIVIGMAHRGRLNVLGNVVRKPLRQIFCEFSGGLSPEDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVVGKTRAKQYYSNDVDRTKNMGILLHGDGSFAGQGVVYETLHLSALPNYTTGGTIHIVLNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDVEAVVHACELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYKVIRSHPSTLEIYQKKLLETGELTQDDIDKIHKKVTSILNEEFQASKDYIPKRRDWLSAYWLGFKSPEQLSRIRNTGVKPEILKTVGKAITTIPENFTPHKAVKRIYEQRAQMIETGEDIDWGFGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSIVHDQTTGEKYCPLDNVILNQDEEMFTVSNSSLSEFAVLGFELGYSMENPNSLIIWEAQFGDFANGAHVIFDNFLASGEAKWLRQTGLVVLLPHGYDGQGPEHSSARLERFLQMADDNPYIIPEMDPTLRKQIQECNLQIVNVTTPANFFHVLRRQIHREFRKPLIVMSPKNLLRSKACRSNLSEFDDVQGHPGFDKQGTRFKRLIKDRNDHSTVEEGIRRLVLCSGKVYYELDDHRSKVDASDVAICRVEQLCPFPYDLVQRELKRYPNAEVVWCQEEPMNMGGYTYILPRLVSSMKAVGRGGFDDVKYVGRAPSAATATGFLKVHQKEQAEIAEKALQREPVNFPF*