AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1014490

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1014490 MtrunA17_Chr7g0226931 93.125 320 20 2 1 319 4 322 0.0 610
Msa1014490 MtrunA17_Chr7g0226911 79.688 320 52 2 1 319 1 308 0.0 511
Msa1014490 MtrunA17_Chr7g0226941 51.815 303 126 5 20 319 17 302 9.31e-98 293
Msa1014490 MtrunA17_Chr6g0450701 45.706 326 140 8 4 319 6 304 1.25e-84 259
Msa1014490 MtrunA17_Chr6g0450711 46.729 321 146 5 4 319 87 387 1.92e-83 259
Msa1014490 MtrunA17_Chr6g0450731 47.440 293 131 6 27 319 25 294 5.83e-83 255
Msa1014490 MtrunA17_Chr6g0450721 44.795 317 148 6 4 319 6 296 5.51e-82 252
Msa1014490 MtrunA17_Chr7g0254461 43.533 317 152 9 7 317 14 309 4.02e-80 249
Msa1014490 MtrunA17_Chr1g0160101 46.667 315 142 5 7 317 14 306 9.54e-80 248
Msa1014490 MtrunA17_Chr1g0159971 43.302 321 150 7 4 317 15 310 3.21e-77 241
Msa1014490 MtrunA17_Chr8g0352901 43.175 315 153 8 9 319 5 297 7.01e-76 237
Msa1014490 MtrunA17_Chr8g0381581 45.172 290 136 6 31 317 36 305 1.06e-72 229
Msa1014490 MtrunA17_Chr8g0339251 41.905 315 143 8 9 319 5 283 3.34e-69 219
Msa1014490 MtrunA17_Chr1g0160031 40.575 313 156 8 10 317 15 302 5.87e-68 217
Msa1014490 MtrunA17_Chr1g0159981 42.765 311 148 7 10 317 26 309 1.87e-66 213
Msa1014490 MtrunA17_Chr1g0159991 39.744 312 162 7 9 317 11 299 7.47e-66 212
Msa1014490 MtrunA17_Chr1g0160011 39.432 317 167 6 4 317 9 303 2.27e-64 208
Msa1014490 MtrunA17_Chr7g0275291 38.782 312 161 6 11 318 9 294 1.45e-62 203
Msa1014490 MtrunA17_Chr8g0347751 38.413 315 176 6 8 318 9 309 6.27e-62 202
Msa1014490 MtrunA17_Chr7g0273101 40.067 297 147 8 30 317 18 292 8.69e-61 198
Msa1014490 MtrunA17_Chr1g0191461 39.792 289 147 7 32 317 28 292 8.34e-59 193
Msa1014490 MtrunA17_Chr7g0271551 37.162 296 145 9 27 317 31 290 1.53e-51 174
Msa1014490 MtrunA17_Chr2g0283531 30.745 322 166 13 5 305 1 286 3.75e-28 112
Msa1014490 MtrunA17_Chr8g0374101 29.377 337 178 11 3 317 5 303 1.38e-26 108
Msa1014490 MtrunA17_Chr3g0096551 33.333 315 161 12 27 321 21 306 3.73e-26 107
Msa1014490 MtrunA17_Chr2g0301581 30.094 319 181 11 4 309 1 290 4.97e-25 103
Msa1014490 MtrunA17_Chr8g0344941 28.012 332 180 12 1 317 10 297 1.46e-24 102
Msa1014490 MtrunA17_Chr3g0099151 28.399 331 177 13 9 317 58 350 7.48e-24 100
Msa1014490 MtrunA17_Chr8g0344931 27.410 332 188 11 1 317 1 294 2.00e-23 99.0
Msa1014490 MtrunA17_Chr2g0301591 29.430 316 165 11 8 309 5 276 2.04e-23 97.8
Msa1014490 MtrunA17_Chr2g0301541 29.375 320 182 12 4 309 1 290 3.01e-23 98.6
Msa1014490 MtrunA17_Chr3g0104821 28.662 314 183 11 20 322 31 314 4.30e-23 98.6
Msa1014490 MtrunA17_Chr2g0294301 26.074 326 184 9 7 317 12 295 5.85e-23 97.8
Msa1014490 MtrunA17_Chr0c01g0489581 27.875 287 170 8 27 304 22 280 1.27e-22 96.7
Msa1014490 MtrunA17_Chr3g0112821 30.164 305 168 11 27 318 22 294 1.27e-22 97.1
Msa1014490 MtrunA17_Chr2g0317271 27.526 287 171 8 27 304 22 280 1.38e-22 96.7
Msa1014490 MtrunA17_Chr5g0420811 26.748 329 183 14 5 321 6 288 1.38e-22 96.7
Msa1014490 MtrunA17_Chr2g0317261 27.526 287 171 8 27 304 22 280 1.61e-22 96.7
Msa1014490 MtrunA17_Chr0c01g0489571 27.526 287 171 8 27 304 22 280 6.05e-22 94.7
Msa1014490 MtrunA17_Chr8g0349341 26.689 296 172 8 30 318 32 289 1.13e-21 94.4
Msa1014490 MtrunA17_Chr2g0285061 25.378 331 196 11 3 322 7 297 1.36e-21 94.0
Msa1014490 MtrunA17_Chr3g0093031 30.097 309 171 11 27 322 22 298 1.98e-21 93.6
Msa1014490 MtrunA17_Chr2g0301641 27.356 329 182 14 3 317 15 300 3.34e-21 93.2
Msa1014490 MtrunA17_Chr4g0057991 28.182 330 185 11 3 317 9 301 5.16e-21 92.4
Msa1014490 MtrunA17_Chr2g0283481 26.284 331 201 12 2 317 15 317 7.29e-21 92.4
Msa1014490 MtrunA17_Chr4g0068441 26.073 303 172 9 25 312 25 290 1.00e-20 91.7
Msa1014490 MtrunA17_Chr2g0283501 26.797 306 184 10 25 317 21 299 1.80e-20 90.9
Msa1014490 MtrunA17_Chr8g0349301 28.000 300 170 10 26 318 28 288 3.34e-20 89.4
Msa1014490 MtrunA17_Chr8g0349321 28.283 297 166 11 30 318 32 289 3.91e-19 87.0
Msa1014490 MtrunA17_Chr3g0099231 25.574 305 172 11 35 322 28 294 5.97e-19 86.7
Msa1014490 MtrunA17_Chr3g0092131 26.316 304 169 9 31 317 18 283 1.40e-18 85.5
Msa1014490 MtrunA17_Chr3g0112691 29.180 305 177 9 27 322 22 296 2.54e-18 84.7
Msa1014490 MtrunA17_Chr5g0438641 26.756 299 156 13 35 315 32 285 5.49e-18 83.6
Msa1014490 MtrunA17_Chr3g0099161 27.333 300 164 11 35 317 92 354 1.25e-17 83.2
Msa1014490 MtrunA17_Chr1g0156911 26.380 326 190 12 7 317 6 296 3.72e-17 81.3
Msa1014490 MtrunA17_Chr1g0156921 26.205 332 184 16 9 319 13 304 6.51e-17 80.5
Msa1014490 MtrunA17_Chr8g0380031 26.481 287 162 10 26 301 79 327 1.29e-16 80.1
Msa1014490 MtrunA17_Chr2g0294311 24.277 346 187 11 1 317 1 300 2.16e-16 79.0
Msa1014490 MtrunA17_Chr5g0434621 25.347 288 164 10 39 312 29 279 2.51e-16 78.6
Msa1014490 MtrunA17_Chr3g0085231 27.303 304 167 13 11 301 12 274 3.41e-16 78.2
Msa1014490 MtrunA17_Chr3g0120861 27.027 296 159 15 35 315 38 291 9.62e-16 77.0
Msa1014490 MtrunA17_Chr1g0178931 27.957 279 148 11 34 305 36 268 1.90e-15 76.3
Msa1014490 MtrunA17_Chr3g0104801 38.406 138 71 7 20 146 31 165 2.95e-15 72.8
Msa1014490 MtrunA17_Chr1g0156901 25.749 334 182 14 7 317 19 309 4.74e-15 75.1
Msa1014490 MtrunA17_Chr2g0330781 25.589 297 170 10 35 317 31 290 5.32e-15 74.7
Msa1014490 MtrunA17_Chr3g0077581 26.073 303 171 12 30 317 35 299 1.01e-14 74.3
Msa1014490 MtrunA17_Chr4g0017431 23.208 293 173 8 35 312 31 286 1.18e-14 73.9
Msa1014490 MtrunA17_Chr5g0405821 25.253 297 173 10 35 317 43 304 1.63e-14 73.6
Msa1014490 MtrunA17_Chr8g0370951 24.625 333 181 12 6 312 4 292 1.88e-14 73.6
Msa1014490 MtrunA17_Chr8g0380041 23.100 329 197 9 7 322 10 295 2.47e-14 72.8
Msa1014490 MtrunA17_Chr1g0156891 25.150 334 190 16 1 317 13 303 3.07e-14 72.8
Msa1014490 MtrunA17_Chr7g0274991 25.000 332 194 12 8 322 5 298 4.35e-14 72.4
Msa1014490 MtrunA17_Chr1g0189901 25.595 336 191 14 3 322 4 296 8.99e-14 71.2
Msa1014490 MtrunA17_Chr3g0086641 25.153 326 191 13 10 322 17 302 1.44e-13 70.9
Msa1014490 MtrunA17_Chr5g0432101 25.597 293 168 9 32 310 30 286 1.88e-13 70.5
Msa1014490 MtrunA17_Chr1g0198381 25.912 274 151 11 36 305 3 228 2.22e-13 69.7
Msa1014490 MtrunA17_Chr1g0198351 24.028 283 164 11 36 315 44 278 3.04e-13 69.7
Msa1014490 MtrunA17_Chr8g0371481 24.746 295 170 11 33 312 39 296 1.45e-12 67.8
Msa1014490 MtrunA17_Chr2g0283511 24.055 291 184 10 40 317 36 302 2.16e-12 67.4
Msa1014490 MtrunA17_Chr8g0371471 25.850 294 167 12 33 312 39 295 4.16e-12 66.2
Msa1014490 MtrunA17_Chr5g0438631 27.839 273 145 16 35 292 28 263 5.92e-12 65.9
Msa1014490 MtrunA17_Chr8g0370981 24.332 337 194 12 6 322 15 310 9.96e-12 65.5
Msa1014490 MtrunA17_Chr8g0371491 25.424 295 173 9 35 317 36 295 8.61e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1014490 AT5G14450.1 50.485 309 130 6 12 317 20 308 4.92e-96 290
Msa1014490 AT3G27950.1 44.304 316 149 5 5 319 6 295 3.88e-77 241
Msa1014490 AT3G26430.1 42.903 310 150 7 11 317 11 296 5.04e-73 230
Msa1014490 AT1G67830.1 42.069 290 145 5 31 317 26 295 2.52e-68 218
Msa1014490 AT1G54790.3 38.509 322 166 10 1 317 1 295 2.87e-59 195
Msa1014490 AT3G05180.1 38.387 310 158 8 14 317 17 299 3.30e-58 192
Msa1014490 AT1G54790.2 36.601 306 169 6 20 322 16 299 9.99e-57 189
Msa1014490 AT1G56670.2 35.897 312 165 8 11 317 16 297 1.06e-55 183
Msa1014490 AT4G01130.2 37.367 281 148 5 26 301 25 282 1.24e-55 184
Msa1014490 AT1G54790.1 36.213 301 167 6 20 317 16 294 1.32e-55 185
Msa1014490 AT1G09390.1 36.709 316 162 11 5 313 6 290 3.20e-55 184
Msa1014490 AT4G01130.1 35.535 318 174 7 7 318 11 303 7.74e-55 183
Msa1014490 AT1G56670.1 35.897 312 165 8 11 317 16 297 1.49e-54 182
Msa1014490 AT3G62280.2 38.516 283 129 9 36 309 37 283 3.83e-52 174
Msa1014490 AT3G62280.1 38.516 283 129 9 36 309 37 283 3.13e-51 174
Msa1014490 AT4G01130.3 29.958 237 141 5 87 318 1 217 3.24e-29 114
Msa1014490 AT5G15720.1 27.393 303 170 9 35 322 30 297 3.93e-27 109
Msa1014490 AT5G15720.2 28.065 310 166 11 26 317 22 292 5.53e-27 108
Msa1014490 AT1G31550.2 27.500 320 192 8 11 319 15 305 1.62e-23 100
Msa1014490 AT1G31550.1 27.419 310 185 8 11 309 15 295 5.39e-23 98.6
Msa1014490 AT1G28640.1 26.667 330 181 12 10 317 13 303 2.30e-22 96.7
Msa1014490 AT1G54030.2 27.273 286 139 11 34 305 51 281 3.75e-22 95.1
Msa1014490 AT1G28600.1 24.691 324 208 8 9 323 8 304 4.47e-22 95.9
Msa1014490 AT1G20135.1 27.083 336 178 11 6 322 5 292 4.63e-22 95.1
Msa1014490 AT5G45910.1 27.545 334 176 12 11 317 8 302 9.51e-22 94.7
Msa1014490 AT2G40250.1 28.477 302 162 12 35 318 36 301 1.02e-21 94.7
Msa1014490 AT1G54020.2 27.758 281 143 7 35 305 33 263 1.51e-21 94.4
Msa1014490 AT1G54030.1 26.502 283 145 10 34 305 51 281 1.91e-21 94.4
Msa1014490 AT2G23540.1 27.628 333 184 11 7 317 17 314 1.94e-21 94.4
Msa1014490 AT1G33811.1 26.154 325 190 11 11 317 7 299 1.94e-21 94.0
Msa1014490 AT1G28580.1 26.480 321 198 10 12 319 12 307 3.06e-21 93.6
Msa1014490 AT2G27360.1 25.472 318 206 8 12 319 8 304 5.73e-21 92.8
Msa1014490 AT1G28570.1 26.756 299 181 9 33 319 32 304 6.66e-21 92.8
Msa1014490 AT1G28610.2 25.938 320 198 8 13 319 7 300 2.58e-20 90.9
Msa1014490 AT1G29660.1 26.769 325 182 11 11 322 15 296 2.85e-20 90.5
Msa1014490 AT1G28650.1 26.647 334 193 10 1 317 7 305 2.98e-20 90.9
Msa1014490 AT5G08460.1 25.982 331 185 14 9 317 21 313 4.31e-20 90.5
Msa1014490 AT1G28590.1 24.085 328 218 8 1 319 1 306 5.35e-20 90.1
Msa1014490 AT5G15720.3 25.984 254 141 8 81 322 48 266 1.10e-19 88.6
Msa1014490 AT1G29670.1 24.620 329 200 8 4 322 5 295 1.19e-19 89.0
Msa1014490 AT2G03980.2 27.113 284 155 9 33 304 41 284 1.62e-19 88.6
Msa1014490 AT2G03980.3 27.113 284 155 9 33 304 41 284 1.62e-19 88.6
Msa1014490 AT2G03980.1 27.113 284 155 9 33 304 41 284 1.62e-19 88.6
Msa1014490 AT2G03980.4 27.113 284 155 9 33 304 41 284 1.62e-19 88.6
Msa1014490 AT5G63170.1 27.566 341 171 12 1 319 1 287 1.73e-19 88.2
Msa1014490 AT1G29670.2 24.620 329 200 8 4 322 73 363 2.21e-19 88.6
Msa1014490 AT1G28660.1 26.646 319 195 8 10 317 13 303 4.46e-19 87.4
Msa1014490 AT5G37690.1 24.383 324 190 12 11 317 1 286 7.40e-19 86.7
Msa1014490 AT1G28670.1 25.994 327 188 11 10 317 13 304 7.78e-19 86.7
Msa1014490 AT1G28660.2 26.332 319 195 9 10 317 13 302 4.22e-18 84.7
Msa1014490 AT1G75930.1 26.380 326 188 11 7 317 2 290 8.34e-18 83.2
Msa1014490 AT3G48460.1 27.213 305 167 12 33 318 36 304 9.26e-18 83.6
Msa1014490 AT1G20132.1 24.281 313 175 10 35 324 61 334 1.78e-17 82.8
Msa1014490 AT1G74460.1 25.926 324 177 12 11 317 6 283 1.84e-17 82.4
Msa1014490 AT1G71691.3 25.685 292 173 9 35 317 55 311 3.58e-17 81.3
Msa1014490 AT1G71691.2 25.597 293 174 9 35 318 55 312 3.68e-17 82.0
Msa1014490 AT3G16370.1 26.441 295 170 10 35 317 30 289 5.33e-17 81.3
Msa1014490 AT3G43550.1 24.534 322 189 11 10 317 5 286 6.68e-17 80.1
Msa1014490 AT1G71250.1 24.458 323 203 12 5 317 10 301 8.19e-17 80.9
Msa1014490 AT5G03820.1 25.084 299 171 10 35 317 33 294 6.48e-16 78.2
Msa1014490 AT5G03820.2 25.084 299 171 10 35 317 61 322 7.99e-16 77.8
Msa1014490 AT4G10950.2 24.183 306 181 12 21 312 58 326 8.22e-16 78.2
Msa1014490 AT2G19010.1 23.948 309 171 8 12 305 11 270 9.13e-16 77.4
Msa1014490 AT2G04020.1 28.889 225 115 9 33 242 41 235 1.25e-15 75.9
Msa1014490 AT1G59406.1 25.155 322 186 12 11 317 5 286 1.27e-15 77.0
Msa1014490 AT1G59030.1 25.155 322 186 12 11 317 5 286 1.27e-15 77.0
Msa1014490 AT1G58725.1 25.155 322 186 12 11 317 5 286 1.27e-15 77.0
Msa1014490 AT2G19010.2 23.948 309 171 8 12 305 41 300 1.44e-15 77.0
Msa1014490 AT2G04020.2 28.889 225 115 9 33 242 41 235 3.03e-15 75.9
Msa1014490 AT1G58520.3 25.243 309 181 11 21 317 16 286 7.24e-15 74.7
Msa1014490 AT1G58525.1 25.243 309 181 11 21 317 16 286 7.24e-15 74.7
Msa1014490 AT5G03810.1 24.265 272 155 9 59 317 57 290 1.06e-14 74.3
Msa1014490 AT4G16230.1 26.538 260 140 9 1 242 1 227 1.25e-14 72.8
Msa1014490 AT1G75920.2 26.036 338 184 15 7 322 2 295 1.94e-14 73.6
Msa1014490 AT5G40990.1 25.753 299 166 11 35 317 37 295 2.40e-14 73.6
Msa1014490 AT1G53920.1 25.352 284 153 12 35 302 48 288 2.80e-14 73.6
Msa1014490 AT1G28600.2 35.000 140 76 5 9 137 8 143 3.19e-14 71.2
Msa1014490 AT2G19050.2 24.306 288 162 9 30 306 30 272 3.91e-14 72.0
Msa1014490 AT1G75900.1 24.074 324 190 11 10 317 18 301 7.81e-14 72.0
Msa1014490 AT3G14210.1 23.973 292 161 9 35 313 36 279 8.16e-14 72.0
Msa1014490 AT5G45670.1 23.853 327 195 10 10 322 8 294 9.14e-14 71.6
Msa1014490 AT5G37690.2 24.149 323 184 15 11 317 1 278 1.03e-13 71.6
Msa1014490 AT2G19050.1 24.306 288 162 9 30 306 30 272 1.25e-13 71.2
Msa1014490 AT3G53100.1 25.994 327 184 14 10 322 11 293 1.30e-13 71.2
Msa1014490 AT5G41890.1 24.699 332 183 12 3 312 8 294 1.57e-13 71.2
Msa1014490 AT3G14225.2 25.484 310 173 12 23 317 29 295 1.87e-13 70.9
Msa1014490 AT4G10950.1 23.529 306 179 13 21 312 58 322 3.52e-13 70.1
Msa1014490 AT4G26790.1 25.413 303 172 14 26 314 19 281 5.99e-13 69.3
Msa1014490 AT4G26790.2 25.413 303 172 14 26 314 19 281 5.99e-13 69.3
Msa1014490 AT2G04570.1 24.923 325 188 15 1 312 1 282 6.48e-13 68.9
Msa1014490 AT1G71120.1 25.685 292 151 13 35 309 31 273 1.01e-12 68.6
Msa1014490 AT1G28610.1 35.507 138 76 5 13 137 7 144 1.91e-12 66.6
Msa1014490 AT1G75920.1 25.872 344 174 16 11 317 1 300 2.67e-12 67.4
Msa1014490 AT3G14820.1 24.490 294 173 11 35 317 32 287 3.27e-12 67.0
Msa1014490 AT1G20120.1 27.541 305 158 14 33 317 76 337 3.94e-12 67.0
Msa1014490 AT5G22810.1 26.481 287 167 11 35 309 34 288 4.65e-12 66.6
Msa1014490 AT4G18970.1 23.355 304 185 10 30 322 27 293 5.34e-12 66.2
Msa1014490 AT4G18970.2 23.684 304 184 10 30 322 27 293 7.44e-12 66.2
Msa1014490 AT1G71691.1 20.732 246 155 3 78 318 1 211 8.06e-12 65.1
Msa1014490 AT1G53940.1 25.338 296 171 11 35 317 39 297 1.57e-11 64.7
Msa1014490 AT1G53940.2 25.338 296 171 11 35 317 39 297 1.71e-11 65.1
Msa1014490 AT3G09930.2 23.188 276 162 9 36 305 40 271 1.80e-11 64.7
Msa1014490 AT3G09930.1 23.188 276 162 9 36 305 40 271 1.80e-11 64.7

Find 64 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGATATTGTTGTCAAATTA+AGG 0.143756 7_1:+23403468 Msa1014490:CDS
ACTGAATAAACTGTGCTATT+TGG 0.176952 7_1:-23398826 None:intergenic
AAATATTAATTAAATAAATT+TGG 0.196203 7_1:-23403585 None:intergenic
AACTCTCTGGCCAAGTTGTT+TGG 0.238826 7_1:-23403431 None:intergenic
TGGCAGAAGCTATATAGTTT+TGG 0.307394 7_1:+23403278 Msa1014490:intron
GCTATCTACATGTTTGATAT+TGG 0.327299 7_1:+23399066 Msa1014490:CDS
TTTGCAAAGTCCTCTGGCTT+TGG 0.328048 7_1:-23399042 None:intergenic
ACTCTCTGGCCAAGTTGTTT+GGG 0.337470 7_1:-23403430 None:intergenic
CACTTGAGTTTGGCTGTTGA+TGG 0.342318 7_1:-23403372 None:intergenic
ATTGGCATAGCAGAAAATAA+AGG 0.352491 7_1:+23398967 Msa1014490:intron
GGTGACTCTAATTCAGATAC+TGG 0.352515 7_1:+23397901 Msa1014490:CDS
GATAACCAGCCACTTGAGTT+TGG 0.356448 7_1:-23403382 None:intergenic
AGATATTGTTGTCAAATTAA+GGG 0.362763 7_1:+23403469 Msa1014490:CDS
ATCAGTAATGCTATTAAATC+AGG 0.373895 7_1:+23403551 Msa1014490:CDS
CGTCTTATCATAGATTTCAT+TGG 0.386380 7_1:+23398006 Msa1014490:CDS
AGCGCATATATAAACTCAAT+TGG 0.386767 7_1:+23398701 Msa1014490:CDS
CTATAGTATTAAAGTGTATG+AGG 0.394259 7_1:-23397792 None:intergenic
GATATTGGTCAAAACGATCT+AGG 0.418063 7_1:+23399081 Msa1014490:CDS
GAGACCTTTCCTGAGGCTGC+TGG 0.419615 7_1:+23397967 Msa1014490:CDS
GCTGTTGATGGCATTGTGAA+TGG 0.427358 7_1:-23403360 None:intergenic
TGATGCTTCTTTCACATATG+TGG 0.427388 7_1:+23403502 Msa1014490:CDS
ACTCAATTGGAACAAGCTAT+AGG 0.433338 7_1:+23398714 Msa1014490:CDS
AACACTGGAAGGCAACCAAT+TGG 0.436758 7_1:-23403332 None:intergenic
ATAGCCTTTGCAAAGTCCTC+TGG 0.449228 7_1:-23399048 None:intergenic
ATACACAATACGGGCCCAAT+TGG 0.450793 7_1:+23403317 Msa1014490:CDS
CATGGTGCAAACTTTGCTGC+AGG 0.459297 7_1:+23398737 Msa1014490:CDS
AGGATTTGAATTCCTCTGCT+TGG 0.466784 7_1:-23397843 None:intergenic
TCAGGAAAGGTCTCACCATA+TGG 0.469484 7_1:-23397958 None:intergenic
GAAGCTCTGCCAGCAGCCTC+AGG 0.469777 7_1:-23397976 None:intergenic
TCTAGGTGATGTTATTAGTA+AGG 0.482909 7_1:+23399098 Msa1014490:CDS
TAAACCTTGCGTGAAGAACT+TGG 0.483609 7_1:-23398864 None:intergenic
CACCATATGGCAAAATAGCT+TGG 0.493553 7_1:-23397945 None:intergenic
CTGTTGATGGCATTGTGAAT+GGG 0.496016 7_1:-23403359 None:intergenic
ACACTGGAAGGCAACCAATT+GGG 0.508895 7_1:-23403331 None:intergenic
AAATGGTAATCTAAGGTGCT+TGG 0.513140 7_1:-23398675 None:intergenic
TGTTAATCACCCAAACAACT+TGG 0.521661 7_1:+23403421 Msa1014490:CDS
GCTGCTGGCAGAGCTTCTGA+TGG 0.524203 7_1:+23397982 Msa1014490:CDS
GGTGATGTTATTAGTAAGGT+GGG 0.524638 7_1:+23399102 Msa1014490:CDS
TTGTGAATGGGCATGAACAC+TGG 0.529985 7_1:-23403347 None:intergenic
CAGGGTCATCAACAATTATG+AGG 0.534352 7_1:+23398756 Msa1014490:CDS
AGCATTGATCTTAAACATTG+TGG 0.538339 7_1:+23399140 Msa1014490:CDS
AGGTGATGTTATTAGTAAGG+TGG 0.544265 7_1:+23399101 Msa1014490:CDS
AACAGCCAAACTCAAGTGGC+TGG 0.545675 7_1:+23403377 Msa1014490:CDS
ATTTGGATTTCAAGAGTGAA+AGG 0.551763 7_1:-23398809 None:intergenic
CATATGTGAAAGAAGCATCA+TGG 0.556655 7_1:-23403499 None:intergenic
TGTTATTAGTAAGGTGGGAA+AGG 0.556947 7_1:+23399107 Msa1014490:CDS
GCTGGTTATCTTGATCAAAA+CGG 0.562435 7_1:+23403395 Msa1014490:CDS
AACAAGACTTTCTTCGATGG+TGG 0.563882 7_1:+23398782 Msa1014490:CDS
ACCACCAAGTTCTTCACGCA+AGG 0.564227 7_1:+23398860 Msa1014490:CDS
TTGAAATTCACATGGTTGCG+AGG 0.566195 7_1:-23397863 None:intergenic
GTTTCTAAGTATCCAAGCAG+AGG 0.584352 7_1:+23397831 Msa1014490:CDS
CAATGAAATCTATGATAAGA+CGG 0.585686 7_1:-23398005 None:intergenic
CAAAACAAGACTTTCTTCGA+TGG 0.593752 7_1:+23398779 Msa1014490:CDS
TATAGTATTAAAGTGTATGA+GGG 0.596159 7_1:-23397791 None:intergenic
CATCAACAGCCAAACTCAAG+TGG 0.607284 7_1:+23403373 Msa1014490:CDS
TCTGCCAGCAGCCTCAGGAA+AGG 0.620134 7_1:-23397971 None:intergenic
AAAGCCAGAGGACTTTGCAA+AGG 0.627414 7_1:+23399044 Msa1014490:CDS
AAAATAGCTTGAAATTCACA+TGG 0.630197 7_1:-23397871 None:intergenic
ATGGTGCAAACTTTGCTGCA+GGG 0.635283 7_1:+23398738 Msa1014490:CDS
ATATGGTGAGACCTTTCCTG+AGG 0.658186 7_1:+23397960 Msa1014490:CDS
ATTGGAACAAGCTATAGGCA+TGG 0.658777 7_1:+23398719 Msa1014490:CDS
GAATGGGCATGAACACTGGA+AGG 0.667050 7_1:-23403343 None:intergenic
AAGACACTTTCCAAAGCCAG+AGG 0.705296 7_1:+23399032 Msa1014490:CDS
ACCTTGCGTGAAGAACTTGG+TGG 0.710749 7_1:-23398861 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATAATTAAAAAAAATTA+GGG - chr7_1:23399948-23399967 None:intergenic 0.0%
!! AATTATAATTAAAAAAAATT+AGG - chr7_1:23399949-23399968 None:intergenic 0.0%
!!! AAATTTAAAACTAAAACTAT+GGG - chr7_1:23399698-23399717 None:intergenic 10.0%
!!! AAAATTTAAAACTAAAACTA+TGG - chr7_1:23399699-23399718 None:intergenic 10.0%
!!! AATTAAAGTAATAGTTATTT+TGG + chr7_1:23399965-23399984 Msa1014490:intron 10.0%
!! ATTACTTATAAAAACATATA+TGG - chr7_1:23400507-23400526 None:intergenic 10.0%
!!! TTTTTTTATGAGATATAATA+AGG - chr7_1:23402027-23402046 None:intergenic 10.0%
!! TTATAATTATATATTGAATC+TGG - chr7_1:23402585-23402604 None:intergenic 10.0%
!!! ATATTTTGGAAAAAATTATA+CGG - chr7_1:23403063-23403082 None:intergenic 10.0%
!! AAAAAATCGAAAAATAAAAG+CGG + chr7_1:23398352-23398371 Msa1014490:intron 15.0%
!!! TCTGAAATAACTTTTATTTT+CGG - chr7_1:23399013-23399032 None:intergenic 15.0%
!! TTAAAAAAAATTAGGGAAAT+TGG - chr7_1:23399941-23399960 None:intergenic 15.0%
!!! TTTAAAATTTTGATACATTG+AGG + chr7_1:23400190-23400209 Msa1014490:intron 15.0%
!!! TTAAAATTTTGATACATTGA+GGG + chr7_1:23400191-23400210 Msa1014490:intron 15.0%
!!! ATATCGTGTTTTATTTATAA+GGG - chr7_1:23400265-23400284 None:intergenic 15.0%
!!! AACCAATTAAATTTGTTATT+TGG - chr7_1:23400876-23400895 None:intergenic 15.0%
!! ATACATAAATGACTAAAAAA+TGG - chr7_1:23401030-23401049 None:intergenic 15.0%
!! ATTTATGTATAAGTATTTCA+TGG + chr7_1:23401040-23401059 Msa1014490:intron 15.0%
!!! ATTTAGCATTATTTTTGTTT+CGG + chr7_1:23401108-23401127 Msa1014490:intron 15.0%
!! TTATAAGGTCTATTATTATT+AGG + chr7_1:23401344-23401363 Msa1014490:intron 15.0%
!!! ATTAACTTTTAACTTAGATA+TGG - chr7_1:23401603-23401622 None:intergenic 15.0%
!! AAAAGTTAATTCATTAAAAG+TGG + chr7_1:23401613-23401632 Msa1014490:intron 15.0%
!! CTAAAACGATTTATAAAATA+AGG - chr7_1:23401928-23401947 None:intergenic 15.0%
!! AATAAAAAATATGTTATCTC+TGG - chr7_1:23402053-23402072 None:intergenic 15.0%
!!! CATAAAAACTTTAAAAATCT+TGG - chr7_1:23402130-23402149 None:intergenic 15.0%
!! AAAAAAAGTGAAATTGATAA+GGG - chr7_1:23402344-23402363 None:intergenic 15.0%
!!! AAAGTGAAAATTTTTTTTGA+AGG - chr7_1:23402369-23402388 None:intergenic 15.0%
!!! AAAAATTTTCACTTTTTCAA+CGG + chr7_1:23402374-23402393 Msa1014490:intron 15.0%
!! AAAATAATTACCATATTACT+TGG + chr7_1:23402987-23403006 Msa1014490:intron 15.0%
!!! AATTTTTTCCAAAATATTGT+TGG + chr7_1:23403066-23403085 Msa1014490:intron 15.0%
!!! AATATACAATTCATGTTTTT+TGG - chr7_1:23403144-23403163 None:intergenic 15.0%
!! TATAGTATTAAAGTGTATGA+GGG - chr7_1:23397794-23397813 None:intergenic 20.0%
!!! TTTCAAGCTATTTTCAATTT+TGG + chr7_1:23397880-23397899 Msa1014490:CDS 20.0%
!!! TCAGTTTTAGTAAAAATGTA+TGG + chr7_1:23398939-23398958 Msa1014490:intron 20.0%
!!! TAAAAATGTATGGTTTTGAT+TGG + chr7_1:23398949-23398968 Msa1014490:intron 20.0%
!!! TAAACAAACTGATTTATGTT+TGG - chr7_1:23399553-23399572 None:intergenic 20.0%
!!! ATAAGGGATAATAGTTATTT+TGG - chr7_1:23400249-23400268 None:intergenic 20.0%
!!! CATATCGTGTTTTATTTATA+AGG - chr7_1:23400266-23400285 None:intergenic 20.0%
!!! TTATTTGTTTCTACAAGTTT+TGG - chr7_1:23400322-23400341 None:intergenic 20.0%
!!! GTAATGAAAGTTTTAGTAAT+AGG + chr7_1:23400522-23400541 Msa1014490:intron 20.0%
!! TGCCAAATAACAAATTTAAT+TGG + chr7_1:23400871-23400890 Msa1014490:intron 20.0%
!! AAAATAGCAATAAAAATCGA+TGG - chr7_1:23401140-23401159 None:intergenic 20.0%
!!! ATCTAACCCAAATTTTAAAA+CGG + chr7_1:23401286-23401305 Msa1014490:intron 20.0%
!!! TTGATACCGTTTTAAAATTT+GGG - chr7_1:23401295-23401314 None:intergenic 20.0%
!!! ATTGATACCGTTTTAAAATT+TGG - chr7_1:23401296-23401315 None:intergenic 20.0%
!!! TTTATTTTAGTCTCTTTGAT+TGG - chr7_1:23401831-23401850 None:intergenic 20.0%
!! AATCATATTTCATCTTAAGT+CGG - chr7_1:23401876-23401895 None:intergenic 20.0%
!! AAATTCTTACAACTAAGATA+TGG - chr7_1:23402101-23402120 None:intergenic 20.0%
!! GAAAAAAAGTGAAATTGATA+AGG - chr7_1:23402345-23402364 None:intergenic 20.0%
!!! AATTCAAACCAACAATATTT+TGG - chr7_1:23403077-23403096 None:intergenic 20.0%
!! AAATCTGAACTATATTGTTA+AGG + chr7_1:23403100-23403119 Msa1014490:intron 20.0%
!! AATCTGAACTATATTGTTAA+GGG + chr7_1:23403101-23403120 Msa1014490:intron 20.0%
!! ATAAGAATTACCATATTACT+TGG + chr7_1:23403258-23403277 Msa1014490:intron 20.0%
!! AAGATATTGTTGTCAAATTA+AGG + chr7_1:23403468-23403487 Msa1014490:CDS 20.0%
!! AGATATTGTTGTCAAATTAA+GGG + chr7_1:23403469-23403488 Msa1014490:CDS 20.0%
! CTATAGTATTAAAGTGTATG+AGG - chr7_1:23397795-23397814 None:intergenic 25.0%
! AAAATAGCTTGAAATTCACA+TGG - chr7_1:23397874-23397893 None:intergenic 25.0%
! CAATGAAATCTATGATAAGA+CGG - chr7_1:23398008-23398027 None:intergenic 25.0%
!! TTTATGAGTTTTCTTATGGA+AGG + chr7_1:23398080-23398099 Msa1014490:intron 25.0%
! TGTAAAATACAGCAAATAGT+GGG - chr7_1:23398295-23398314 None:intergenic 25.0%
!!! ATTTGCTGTATTTTACACAA+AGG + chr7_1:23398298-23398317 Msa1014490:intron 25.0%
! TTTATATATGCGCTCAAAAA+TGG - chr7_1:23398695-23398714 None:intergenic 25.0%
!! GCACTGTTTATAATTGTTTT+TGG - chr7_1:23399265-23399284 None:intergenic 25.0%
! GAATTGATAAAGGACAATAA+AGG - chr7_1:23399453-23399472 None:intergenic 25.0%
! TAAAGAAGGAGAATTGATAA+AGG - chr7_1:23399463-23399482 None:intergenic 25.0%
! TAAAGGAGAATTGATAAAGA+AGG - chr7_1:23399477-23399496 None:intergenic 25.0%
! ACTAAAATAGACATAGCTAA+AGG - chr7_1:23399494-23399513 None:intergenic 25.0%
!! TGAGAGAATTGATTTATGTT+TGG - chr7_1:23399597-23399616 None:intergenic 25.0%
!!! TTTTGGTCTTTAAATGTGTA+AGG - chr7_1:23400232-23400251 None:intergenic 25.0%
! TAACTCAATTCTTGAAAAAC+CGG - chr7_1:23400727-23400746 None:intergenic 25.0%
! AATATAATGGCGTGTAATTA+AGG - chr7_1:23400841-23400860 None:intergenic 25.0%
!!! AAAAATCGGGATTTTGTTTT+AGG - chr7_1:23401256-23401275 None:intergenic 25.0%
! CCTTATAAAATGTGACATAA+TGG - chr7_1:23401332-23401351 None:intergenic 25.0%
!! CCATTATGTCACATTTTATA+AGG + chr7_1:23401329-23401348 Msa1014490:intron 25.0%
!! AGAAATTAGCTATACTGTTT+TGG + chr7_1:23401702-23401721 Msa1014490:intron 25.0%
! AATAAGACTTGACAGAAAAT+AGG - chr7_1:23401748-23401767 None:intergenic 25.0%
!!! ACGTTTGATTTGCAATAAAT+TGG + chr7_1:23402151-23402170 Msa1014490:intron 25.0%
!!! TTTGATTTGCAATAAATTGG+AGG + chr7_1:23402154-23402173 Msa1014490:intron 25.0%
! CAAAATCCTATACAATATGA+AGG + chr7_1:23402756-23402775 Msa1014490:intron 25.0%
! ATAAATACTTGCCAGAAAAT+AGG - chr7_1:23402967-23402986 None:intergenic 25.0%
! ACTATATTGTTAAGGGAATT+CGG + chr7_1:23403108-23403127 Msa1014490:intron 25.0%
! TGTGTTCAATTTGATGTTAA+AGG + chr7_1:23403165-23403184 Msa1014490:intron 25.0%
!! TGTACTAATAGTCTATTTTC+TGG + chr7_1:23403223-23403242 Msa1014490:intron 25.0%
!! GAAATTTTGGATACACAATA+CGG + chr7_1:23403307-23403326 Msa1014490:CDS 25.0%
!! AAATTTTGGATACACAATAC+GGG + chr7_1:23403308-23403327 Msa1014490:CDS 25.0%
! ATCAGTAATGCTATTAAATC+AGG + chr7_1:23403551-23403570 Msa1014490:CDS 25.0%
CGTCTTATCATAGATTTCAT+TGG + chr7_1:23398006-23398025 Msa1014490:CDS 30.0%
! CTGCTTTATGAGTTTTCTTA+TGG + chr7_1:23398076-23398095 Msa1014490:intron 30.0%
TTATGGAAGGTTTAAACGAA+TGG + chr7_1:23398093-23398112 Msa1014490:intron 30.0%
GTGTAAAATACAGCAAATAG+TGG - chr7_1:23398296-23398315 None:intergenic 30.0%
CTGTTTCAAAAACTTGAAAC+AGG + chr7_1:23398321-23398340 Msa1014490:intron 30.0%
TATACATAGAGTCTGGAAAA+GGG + chr7_1:23398395-23398414 Msa1014490:intron 30.0%
! AAGTAAAGTTGTTGTTACGT+AGG - chr7_1:23398532-23398551 None:intergenic 30.0%
TGAAATACGATTCAGAAGAA+AGG - chr7_1:23398621-23398640 None:intergenic 30.0%
AGCGCATATATAAACTCAAT+TGG + chr7_1:23398701-23398720 Msa1014490:CDS 30.0%
ATTTGGATTTCAAGAGTGAA+AGG - chr7_1:23398812-23398831 None:intergenic 30.0%
! ACTGAATAAACTGTGCTATT+TGG - chr7_1:23398829-23398848 None:intergenic 30.0%
! ATTTTTGTGCTGCATTTCTA+AGG - chr7_1:23398894-23398913 None:intergenic 30.0%
ATTGGCATAGCAGAAAATAA+AGG + chr7_1:23398967-23398986 Msa1014490:intron 30.0%
GCTATCTACATGTTTGATAT+TGG + chr7_1:23399066-23399085 Msa1014490:CDS 30.0%
TCTAGGTGATGTTATTAGTA+AGG + chr7_1:23399098-23399117 Msa1014490:CDS 30.0%
!! AGCATTGATCTTAAACATTG+TGG + chr7_1:23399140-23399159 Msa1014490:CDS 30.0%
!!! TTTTTGGCTAGAATTGCTTT+TGG - chr7_1:23399287-23399306 None:intergenic 30.0%
!!! CAAACCAAACATGTTGTTTT+TGG - chr7_1:23399303-23399322 None:intergenic 30.0%
CAAAAACAACATGTTTGGTT+TGG + chr7_1:23399301-23399320 Msa1014490:intron 30.0%
GGACAATAAAGGAAAATAGT+AGG - chr7_1:23399442-23399461 None:intergenic 30.0%
! TTTTCAACGAAGTGATTCTA+AGG - chr7_1:23399831-23399850 None:intergenic 30.0%
AAATTAGGGAAATTGGATGT+GGG - chr7_1:23399934-23399953 None:intergenic 30.0%
AAAATTAGGGAAATTGGATG+TGG - chr7_1:23399935-23399954 None:intergenic 30.0%
TACATCAAACTTGGAAAACT+TGG + chr7_1:23400560-23400579 Msa1014490:intron 30.0%
TCCATATCTCATTCGATAAA+CGG - chr7_1:23400660-23400679 None:intergenic 30.0%
ATCTAACCATTATTGTCAAG+AGG + chr7_1:23400748-23400767 Msa1014490:intron 30.0%
TCTAACCATTATTGTCAAGA+GGG + chr7_1:23400749-23400768 Msa1014490:intron 30.0%
GCAGAAATCAAGGAATATAA+TGG - chr7_1:23400854-23400873 None:intergenic 30.0%
!! TTGTTATTTGGCAGAAATCA+AGG - chr7_1:23400864-23400883 None:intergenic 30.0%
!! ACAAAAGCGCAAGATTTTAA+AGG + chr7_1:23400987-23401006 Msa1014490:intron 30.0%
!! CAAAAGCGCAAGATTTTAAA+GGG + chr7_1:23400988-23401007 Msa1014490:intron 30.0%
GTTGAGTAAAATTCTTCGTT+TGG + chr7_1:23401190-23401209 Msa1014490:intron 30.0%
AGATCCAAGGTTGTAAAAAT+CGG - chr7_1:23401270-23401289 None:intergenic 30.0%
! TAAAATTTGGGTTAGATCCA+AGG - chr7_1:23401283-23401302 None:intergenic 30.0%
!! AAATGTGACATAATGGATCT+TGG - chr7_1:23401325-23401344 None:intergenic 30.0%
! GATTCAAAGTGTTATCTTAG+TGG - chr7_1:23401470-23401489 None:intergenic 30.0%
TAACACTTTGAATCTCTAAG+AGG + chr7_1:23401476-23401495 Msa1014490:intron 30.0%
! TTGAATCTCTAAGAGGTAAA+TGG + chr7_1:23401483-23401502 Msa1014490:intron 30.0%
!!! GAGATATTGCTTTTAAAGTG+AGG - chr7_1:23401555-23401574 None:intergenic 30.0%
GTCAATGAGACTAGATAATT+GGG - chr7_1:23401790-23401809 None:intergenic 30.0%
TGTCAATGAGACTAGATAAT+TGG - chr7_1:23401791-23401810 None:intergenic 30.0%
!! ATTTTAGTCTCTTTGATTGG+TGG - chr7_1:23401828-23401847 None:intergenic 30.0%
! ATCTTAAGTCGGACTTTTAA+TGG - chr7_1:23401865-23401884 None:intergenic 30.0%
!!! CGTTTTAGAAGAGTTGAATT+AGG + chr7_1:23401940-23401959 Msa1014490:intron 30.0%
CACTTAGAATTTAGATTGAG+CGG - chr7_1:23401971-23401990 None:intergenic 30.0%
ATCTAAATTCTAAGTGAGAG+CGG + chr7_1:23401975-23401994 Msa1014490:intron 30.0%
!! GTTAATTTGTGGATCAAACA+CGG - chr7_1:23402205-23402224 None:intergenic 30.0%
! GCTATTCTAGTGTTAATTTG+TGG - chr7_1:23402216-23402235 None:intergenic 30.0%
GAAACAATTAACCAAAAGGA+TGG - chr7_1:23402412-23402431 None:intergenic 30.0%
CAAGGAAACAATTAACCAAA+AGG - chr7_1:23402416-23402435 None:intergenic 30.0%
!! CTTTTGGTTAATTGTTTCCT+TGG + chr7_1:23402414-23402433 Msa1014490:intron 30.0%
! TTTGTGCAAAGATTCTAAGA+CGG - chr7_1:23403201-23403220 None:intergenic 30.0%
! AAGCTTTTTATTGAACTCTC+TGG - chr7_1:23403447-23403466 None:intergenic 30.0%
!! TACCAAGCTATTTTGCCATA+TGG + chr7_1:23397943-23397962 Msa1014490:CDS 35.0%
TAGCCCACTCAAACTATTAT+CGG + chr7_1:23398157-23398176 Msa1014490:intron 35.0%
! AGAAGTGTGCTTCTTCTTTA+AGG - chr7_1:23398201-23398220 None:intergenic 35.0%
! TAAAGAAGAAGCACACTTCT+AGG + chr7_1:23398201-23398220 Msa1014490:intron 35.0%
GTATACATAGAGTCTGGAAA+AGG + chr7_1:23398394-23398413 Msa1014490:intron 35.0%
AACTGTGTCAATACACCAAA+TGG - chr7_1:23398426-23398445 None:intergenic 35.0%
AACAACCTCGTGTAAAATAC+AGG - chr7_1:23398457-23398476 None:intergenic 35.0%
! TAAAGTTGTTGTTACGTAGG+TGG - chr7_1:23398529-23398548 None:intergenic 35.0%
!! AACATGGACTAGTGAAAAAG+GGG - chr7_1:23398569-23398588 None:intergenic 35.0%
!! CAACATGGACTAGTGAAAAA+GGG - chr7_1:23398570-23398589 None:intergenic 35.0%
!! ACAACATGGACTAGTGAAAA+AGG - chr7_1:23398571-23398590 None:intergenic 35.0%
AGTTTGCAATTGAGACAACA+TGG - chr7_1:23398585-23398604 None:intergenic 35.0%
! AAATGGTAATCTAAGGTGCT+TGG - chr7_1:23398678-23398697 None:intergenic 35.0%
CGCTCAAAAATGGTAATCTA+AGG - chr7_1:23398685-23398704 None:intergenic 35.0%
ACTCAATTGGAACAAGCTAT+AGG + chr7_1:23398714-23398733 Msa1014490:CDS 35.0%
CAAAACAAGACTTTCTTCGA+TGG + chr7_1:23398779-23398798 Msa1014490:CDS 35.0%
GATATTGGTCAAAACGATCT+AGG + chr7_1:23399081-23399100 Msa1014490:CDS 35.0%
AGGTGATGTTATTAGTAAGG+TGG + chr7_1:23399101-23399120 Msa1014490:CDS 35.0%
GGTGATGTTATTAGTAAGGT+GGG + chr7_1:23399102-23399121 Msa1014490:CDS 35.0%
TGTTATTAGTAAGGTGGGAA+AGG + chr7_1:23399107-23399126 Msa1014490:CDS 35.0%
TGATACATATAGAGCCTGTT+TGG + chr7_1:23399223-23399242 Msa1014490:intron 35.0%
CTAGCCAAAAACAACATGTT+TGG + chr7_1:23399296-23399315 Msa1014490:intron 35.0%
! TTCTAGAAAAGCTAGAAGCT+AGG - chr7_1:23399380-23399399 None:intergenic 35.0%
ACTAAAACTATGGGTGTGTT+TGG - chr7_1:23399689-23399708 None:intergenic 35.0%
AATTAGGGAAATTGGATGTG+GGG - chr7_1:23399933-23399952 None:intergenic 35.0%
AACTACTCGTTACACATTCA+GGG - chr7_1:23399992-23400011 None:intergenic 35.0%
TAACTACTCGTTACACATTC+AGG - chr7_1:23399993-23400012 None:intergenic 35.0%
GATACATTGAGGGACTATTA+TGG + chr7_1:23400201-23400220 Msa1014490:intron 35.0%
!!! GTTTCTACAAGTTTTGGACA+AGG - chr7_1:23400316-23400335 None:intergenic 35.0%
!!! ACACATTGACTTTGCTTTTG+TGG + chr7_1:23400347-23400366 Msa1014490:intron 35.0%
!!! CACATTGACTTTGCTTTTGT+GGG + chr7_1:23400348-23400367 Msa1014490:intron 35.0%
!!! TTTTTTCGTTGTGCAGATCA+GGG - chr7_1:23400435-23400454 None:intergenic 35.0%
!!! TTTTTTTCGTTGTGCAGATC+AGG - chr7_1:23400436-23400455 None:intergenic 35.0%
CCAAGTTTGATGTAAAGAGT+TGG - chr7_1:23400554-23400573 None:intergenic 35.0%
CCAACTCTTTACATCAAACT+TGG + chr7_1:23400551-23400570 Msa1014490:intron 35.0%
CTACTTTGAGTCTGTTTGAT+TGG - chr7_1:23400625-23400644 None:intergenic 35.0%
CCATATCTCATTCGATAAAC+GGG - chr7_1:23400659-23400678 None:intergenic 35.0%
ATAATTCTCACCATACGAAC+CGG + chr7_1:23400705-23400724 Msa1014490:intron 35.0%
CATTTCCCTCTTGACAATAA+TGG - chr7_1:23400757-23400776 None:intergenic 35.0%
AATGGCGTGTAATTAAGGAA+AGG - chr7_1:23400836-23400855 None:intergenic 35.0%
! AATCCCGATTTTTACAACCT+TGG + chr7_1:23401263-23401282 Msa1014490:intron 35.0%
GATCCAAGGTTGTAAAAATC+GGG - chr7_1:23401269-23401288 None:intergenic 35.0%
CTATTATTATTAGGCCACTC+AGG + chr7_1:23401353-23401372 Msa1014490:intron 35.0%
TAAATACAGTGTTACCTGAG+TGG - chr7_1:23401370-23401389 None:intergenic 35.0%
! ATAGTGGAAGACTTGATAAG+AGG - chr7_1:23401443-23401462 None:intergenic 35.0%
TTATCAAGTCTTCCACTATC+AGG + chr7_1:23401444-23401463 Msa1014490:intron 35.0%
! AATCTCTAAGAGGTAAATGG+TGG + chr7_1:23401486-23401505 Msa1014490:intron 35.0%
! ATCTCTAAGAGGTAAATGGT+GGG + chr7_1:23401487-23401506 Msa1014490:intron 35.0%
TTGCAAAAATTTCTGACAGC+AGG + chr7_1:23401644-23401663 Msa1014490:intron 35.0%
! TAAGTCGGACTTTTAATGGT+TGG - chr7_1:23401861-23401880 None:intergenic 35.0%
TTTGCAATAAATTGGAGGAC+AGG + chr7_1:23402159-23402178 Msa1014490:intron 35.0%
!! AAACTTGTTACCCACTAAAG+TGG + chr7_1:23402272-23402291 Msa1014490:intron 35.0%
TACTTGTACTCCACTTTAGT+GGG - chr7_1:23402285-23402304 None:intergenic 35.0%
ATACTTGTACTCCACTTTAG+TGG - chr7_1:23402286-23402305 None:intergenic 35.0%
!!! TTTCACTTTTTCAACGGCAT+AGG + chr7_1:23402380-23402399 Msa1014490:intron 35.0%
! ATAGGAGAATACCATCCTTT+TGG + chr7_1:23402398-23402417 Msa1014490:intron 35.0%
ATAACGACAAGATATGACCA+AGG - chr7_1:23402434-23402453 None:intergenic 35.0%
! TGCACTAATAGCCTATTTTC+TGG + chr7_1:23402953-23402972 Msa1014490:intron 35.0%
CTAGATTCTGCCAAGTAATA+TGG - chr7_1:23403000-23403019 None:intergenic 35.0%
ATAGCTTCTGCCAAGTAATA+TGG - chr7_1:23403271-23403290 None:intergenic 35.0%
! TGGCAGAAGCTATATAGTTT+TGG + chr7_1:23403278-23403297 Msa1014490:intron 35.0%
!!! AGCTATATAGTTTTGGAGCA+AGG + chr7_1:23403285-23403304 Msa1014490:CDS 35.0%
!!! GTTTTGGAGCAAGGAAATTT+TGG + chr7_1:23403294-23403313 Msa1014490:CDS 35.0%
GCTGGTTATCTTGATCAAAA+CGG + chr7_1:23403395-23403414 Msa1014490:CDS 35.0%
TGTTAATCACCCAAACAACT+TGG + chr7_1:23403421-23403440 Msa1014490:CDS 35.0%
!! CATATGTGAAAGAAGCATCA+TGG - chr7_1:23403502-23403521 None:intergenic 35.0%
TGATGCTTCTTTCACATATG+TGG + chr7_1:23403502-23403521 Msa1014490:CDS 35.0%
GTTTCTAAGTATCCAAGCAG+AGG + chr7_1:23397831-23397850 Msa1014490:CDS 40.0%
AGGATTTGAATTCCTCTGCT+TGG - chr7_1:23397846-23397865 None:intergenic 40.0%
TTGAAATTCACATGGTTGCG+AGG - chr7_1:23397866-23397885 None:intergenic 40.0%
GGTGACTCTAATTCAGATAC+TGG + chr7_1:23397901-23397920 Msa1014490:CDS 40.0%
CACCATATGGCAAAATAGCT+TGG - chr7_1:23397948-23397967 None:intergenic 40.0%
AGCCCACTCAAACTATTATC+GGG + chr7_1:23398158-23398177 Msa1014490:intron 40.0%
ACCCCGATAATAGTTTGAGT+GGG - chr7_1:23398163-23398182 None:intergenic 40.0%
CTCAAGTCAATACTACCAAG+CGG + chr7_1:23398225-23398244 Msa1014490:intron 40.0%
AGCTCTGTATACATAGAGTC+TGG + chr7_1:23398388-23398407 Msa1014490:intron 40.0%
GTGTCAATACACCAAATGGT+GGG - chr7_1:23398422-23398441 None:intergenic 40.0%
TGTGTCAATACACCAAATGG+TGG - chr7_1:23398423-23398442 None:intergenic 40.0%
CCTCGTGTAAAATACAGGAT+GGG - chr7_1:23398452-23398471 None:intergenic 40.0%
ACCTCGTGTAAAATACAGGA+TGG - chr7_1:23398453-23398472 None:intergenic 40.0%
TTACGTAGGTGGACAGTTAT+GGG - chr7_1:23398518-23398537 None:intergenic 40.0%
ATTGGAACAAGCTATAGGCA+TGG + chr7_1:23398719-23398738 Msa1014490:CDS 40.0%
CAGGGTCATCAACAATTATG+AGG + chr7_1:23398756-23398775 Msa1014490:CDS 40.0%
AACAAGACTTTCTTCGATGG+TGG + chr7_1:23398782-23398801 Msa1014490:CDS 40.0%
TAAACCTTGCGTGAAGAACT+TGG - chr7_1:23398867-23398886 None:intergenic 40.0%
!! TCATGGAGAATTGCTTTTGG+AGG - chr7_1:23399347-23399366 None:intergenic 40.0%
! GCTTCATGGAGAATTGCTTT+TGG - chr7_1:23399350-23399369 None:intergenic 40.0%
AGCTAGGATTTGTAGCTTCA+TGG - chr7_1:23399364-23399383 None:intergenic 40.0%
TATCTCATTCGATAAACGGG+TGG - chr7_1:23400656-23400675 None:intergenic 40.0%
CCCGTTTATCGAATGAGATA+TGG + chr7_1:23400656-23400675 Msa1014490:intron 40.0%
!! TCTTGAAAAACCGGTTCGTA+TGG - chr7_1:23400718-23400737 None:intergenic 40.0%
!!! GGATTTTGTTTTAGGTCGAG+TGG - chr7_1:23401248-23401267 None:intergenic 40.0%
!! TAACACACCCTCTCACTTTT+AGG - chr7_1:23401399-23401418 None:intergenic 40.0%
TTATCTTAGTGGCCTGATAG+TGG - chr7_1:23401459-23401478 None:intergenic 40.0%
GTGAGAGCGGATATTATAAG+TGG + chr7_1:23401988-23402007 Msa1014490:intron 40.0%
CGGATATTATAAGTGGTGCA+TGG + chr7_1:23401995-23402014 Msa1014490:intron 40.0%
ATAGCACAAAAATACTCGCG+CGG + chr7_1:23402231-23402250 Msa1014490:intron 40.0%
GAGTACAAGTATTTGTACGC+TGG + chr7_1:23402294-23402313 Msa1014490:intron 40.0%
! TTTGATTCGCACTAAAGGAC+AGG - chr7_1:23402896-23402915 None:intergenic 40.0%
TGTGCGAGAACTTAATAGAG+TGG - chr7_1:23403040-23403059 None:intergenic 40.0%
!! CTGTTGATGGCATTGTGAAT+GGG - chr7_1:23403362-23403381 None:intergenic 40.0%
TCAGGAAAGGTCTCACCATA+TGG - chr7_1:23397961-23397980 None:intergenic 45.0%
ATATGGTGAGACCTTTCCTG+AGG + chr7_1:23397960-23397979 Msa1014490:CDS 45.0%
GCCCACTCAAACTATTATCG+GGG + chr7_1:23398159-23398178 Msa1014490:intron 45.0%
CACCCCGATAATAGTTTGAG+TGG - chr7_1:23398164-23398183 None:intergenic 45.0%
AGCTCTGTATACGTAGAGTC+TGG + chr7_1:23398261-23398280 Msa1014490:intron 45.0%
! CCCATCCTGTATTTTACACG+AGG + chr7_1:23398449-23398468 Msa1014490:intron 45.0%
GTTACGTAGGTGGACAGTTA+TGG - chr7_1:23398519-23398538 None:intergenic 45.0%
! CTAGTGAAAAAGGGGAGCAT+TGG - chr7_1:23398561-23398580 None:intergenic 45.0%
ATGGTGCAAACTTTGCTGCA+GGG + chr7_1:23398738-23398757 Msa1014490:CDS 45.0%
AAGACACTTTCCAAAGCCAG+AGG + chr7_1:23399032-23399051 Msa1014490:CDS 45.0%
! TTTGCAAAGTCCTCTGGCTT+TGG - chr7_1:23399045-23399064 None:intergenic 45.0%
AAAGCCAGAGGACTTTGCAA+AGG + chr7_1:23399044-23399063 Msa1014490:CDS 45.0%
ATAGCCTTTGCAAAGTCCTC+TGG - chr7_1:23399051-23399070 None:intergenic 45.0%
!! AGCCTGTTTGGTTCAGCTTT+TGG + chr7_1:23399235-23399254 Msa1014490:intron 45.0%
AGCCAAAAGCTGAACCAAAC+AGG - chr7_1:23399240-23399259 None:intergenic 45.0%
TAAGTTCGATAATCGCGCCA+GGG + chr7_1:23399874-23399893 Msa1014490:intron 45.0%
GAAATTGGATGTGGGGCTTT+AGG - chr7_1:23399926-23399945 None:intergenic 45.0%
!! GGACAAGGTTGTTGACTTGT+TGG - chr7_1:23400301-23400320 None:intergenic 45.0%
! ACGGATCTAGACATTTGGTG+AGG - chr7_1:23400412-23400431 None:intergenic 45.0%
TACCCAGTCCTAAAAGTGAG+AGG + chr7_1:23401388-23401407 Msa1014490:intron 45.0%
ACCCAGTCCTAAAAGTGAGA+GGG + chr7_1:23401389-23401408 Msa1014490:intron 45.0%
!!! ACCCTCTCACTTTTAGGACT+GGG - chr7_1:23401393-23401412 None:intergenic 45.0%
GTGGAAGACTTGATAAGAGG+TGG - chr7_1:23401440-23401459 None:intergenic 45.0%
CATCCAATAGCTCTCAGAGT+CGG + chr7_1:23401574-23401593 Msa1014490:intron 45.0%
! TAACCGACTCTGAGAGCTAT+TGG - chr7_1:23401580-23401599 None:intergenic 45.0%
AAAGGACAGGACAACAGAAC+AGG - chr7_1:23402883-23402902 None:intergenic 45.0%
! ACGCGTTTGATTCGCACTAA+AGG - chr7_1:23402901-23402920 None:intergenic 45.0%
ATACACAATACGGGCCCAAT+TGG + chr7_1:23403317-23403336 Msa1014490:CDS 45.0%
ACACTGGAAGGCAACCAATT+GGG - chr7_1:23403334-23403353 None:intergenic 45.0%
AACACTGGAAGGCAACCAAT+TGG - chr7_1:23403335-23403354 None:intergenic 45.0%
TTGTGAATGGGCATGAACAC+TGG - chr7_1:23403350-23403369 None:intergenic 45.0%
!! GCTGTTGATGGCATTGTGAA+TGG - chr7_1:23403363-23403382 None:intergenic 45.0%
CACTTGAGTTTGGCTGTTGA+TGG - chr7_1:23403375-23403394 None:intergenic 45.0%
CATCAACAGCCAAACTCAAG+TGG + chr7_1:23403373-23403392 Msa1014490:CDS 45.0%
GATAACCAGCCACTTGAGTT+TGG - chr7_1:23403385-23403404 None:intergenic 45.0%
ACTCTCTGGCCAAGTTGTTT+GGG - chr7_1:23403433-23403452 None:intergenic 45.0%
AACTCTCTGGCCAAGTTGTT+TGG - chr7_1:23403434-23403453 None:intergenic 45.0%
!!! TTTTTTAATTTAGAATAATT+TGG + chr7_1:23402535-23402554 Msa1014490:intron 5.0%
CTTTAGTGCACTAGACCGCT+TGG - chr7_1:23398243-23398262 None:intergenic 50.0%
TGGAAAAGGGTCCCACCATT+TGG + chr7_1:23398408-23398427 Msa1014490:intron 50.0%
CATGGTGCAAACTTTGCTGC+AGG + chr7_1:23398737-23398756 Msa1014490:CDS 50.0%
ACCACCAAGTTCTTCACGCA+AGG + chr7_1:23398860-23398879 Msa1014490:CDS 50.0%
ACCTTGCGTGAAGAACTTGG+TGG - chr7_1:23398864-23398883 None:intergenic 50.0%
CTGGCGCGATTATCGAACTT+AGG - chr7_1:23399875-23399894 None:intergenic 50.0%
CTAAGTTCGATAATCGCGCC+AGG + chr7_1:23399873-23399892 Msa1014490:intron 50.0%
AAGTTCGATAATCGCGCCAG+GGG + chr7_1:23399875-23399894 Msa1014490:intron 50.0%
CCTCTTAATACATCTGCCCC+TGG - chr7_1:23399894-23399913 None:intergenic 50.0%
CCAGGGGCAGATGTATTAAG+AGG + chr7_1:23399891-23399910 Msa1014490:intron 50.0%
CAGGGACGGATCTAGACATT+TGG - chr7_1:23400417-23400436 None:intergenic 50.0%
TTCGTTGTGCAGATCAGGGA+CGG - chr7_1:23400431-23400450 None:intergenic 50.0%
!!! CACCCTCTCACTTTTAGGAC+TGG - chr7_1:23401394-23401413 None:intergenic 50.0%
GAATGGGCATGAACACTGGA+AGG - chr7_1:23403346-23403365 None:intergenic 50.0%
AACAGCCAAACTCAAGTGGC+TGG + chr7_1:23403377-23403396 Msa1014490:CDS 50.0%
CAAAAATACTCGCGCGGCAC+AGG + chr7_1:23402237-23402256 Msa1014490:intron 55.0%
GAGACCTTTCCTGAGGCTGC+TGG + chr7_1:23397967-23397986 Msa1014490:CDS 60.0%
TCTGCCAGCAGCCTCAGGAA+AGG - chr7_1:23397974-23397993 None:intergenic 60.0%
GCTGCTGGCAGAGCTTCTGA+TGG + chr7_1:23397982-23398001 Msa1014490:CDS 60.0%
GAAGCTCTGCCAGCAGCCTC+AGG - chr7_1:23397979-23397998 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 23397784 23403598 23397784 ID=Msa1014490;Name=Msa1014490
chr7_1 mRNA 23397784 23403598 23397784 ID=Msa1014490-mRNA-1;Parent=Msa1014490;Name=Msa1014490-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|4|0|324
chr7_1 exon 23397784 23398027 23397784 ID=Msa1014490-mRNA-1:exon:5424;Parent=Msa1014490-mRNA-1
chr7_1 exon 23398675 23398881 23398675 ID=Msa1014490-mRNA-1:exon:5425;Parent=Msa1014490-mRNA-1
chr7_1 exon 23398977 23399185 23398977 ID=Msa1014490-mRNA-1:exon:5426;Parent=Msa1014490-mRNA-1
chr7_1 exon 23403284 23403598 23403284 ID=Msa1014490-mRNA-1:exon:5427;Parent=Msa1014490-mRNA-1
chr7_1 CDS 23397784 23398027 23397784 ID=Msa1014490-mRNA-1:cds;Parent=Msa1014490-mRNA-1
chr7_1 CDS 23398675 23398881 23398675 ID=Msa1014490-mRNA-1:cds;Parent=Msa1014490-mRNA-1
chr7_1 CDS 23398977 23399185 23398977 ID=Msa1014490-mRNA-1:cds;Parent=Msa1014490-mRNA-1
chr7_1 CDS 23403284 23403598 23403284 ID=Msa1014490-mRNA-1:cds;Parent=Msa1014490-mRNA-1
Gene Sequence

>Msa1014490

ATGGGAGCCCTCATACACTTTAATACTATAGTTTTGTTACTCAGTTTGTTTCTAAGTATCCAAGCAGAGGAATTCAAATCCTCGCAACCATGTGAATTTCAAGCTATTTTCAATTTTGGTGACTCTAATTCAGATACTGGTTGTATGTCAGCAGCATTTTACCAAGCTATTTTGCCATATGGTGAGACCTTTCCTGAGGCTGCTGGCAGAGCTTCTGATGGCCGTCTTATCATAGATTTCATTGCCAAGCACCTTAGATTACCATTTTTGAGCGCATATATAAACTCAATTGGAACAAGCTATAGGCATGGTGCAAACTTTGCTGCAGGGTCATCAACAATTATGAGGCAAAACAAGACTTTCTTCGATGGTGGCTCGCCTTTCACTCTTGAAATCCAAATAGCACAGTTTATTCAGTTCAAAGCGCGCACCACCAAGTTCTTCACGCAAGCAGAAAATAAAGGTTCTTTCAGAAGACACTTAGCCGAAAATAAAAGTTATTTCAGAAGACACTTTCCAAAGCCAGAGGACTTTGCAAAGGCTATCTACATGTTTGATATTGGTCAAAACGATCTAGGTGATGTTATTAGTAAGGTGGGAAAGGAAGATTCACAAGCATTGATCTTAAACATTGTGGAATATTTTTCAAAACAAGTTCAAAAGCTATATAGTTTTGGAGCAAGGAAATTTTGGATACACAATACGGGCCCAATTGGTTGCCTTCCAGTGTTCATGCCCATTCACAATGCCATCAACAGCCAAACTCAAGTGGCTGGTTATCTTGATCAAAACGGCTGTGTTAATCACCCAAACAACTTGGCCAGAGAGTTCAATAAAAAGCTTAAAGATATTGTTGTCAAATTAAGGGAACAGTTCCATGATGCTTCTTTCACATATGTGGATATGTTCTCTGCAAAGTATGAGCTAATCAGTAATGCTATTAAATCAGGTATTATCTTCACCAAATTTATTTAA
Protein sequence

>Msa1014490

MGALIHFNTIVLLLSLFLSIQAEEFKSSQPCEFQAIFNFGDSNSDTGCMSAAFYQAILPYGETFPEAAGRASDGRLIIDFIAKHLRLPFLSAYINSIGTSYRHGANFAAGSSTIMRQNKTFFDGGSPFTLEIQIAQFIQFKARTTKFFTQAENKGSFRRHLAENKSYFRRHFPKPEDFAKAIYMFDIGQNDLGDVISKVGKEDSQALILNIVEYFSKQVQKLYSFGARKFWIHNTGPIGCLPVFMPIHNAINSQTQVAGYLDQNGCVNHPNNLAREFNKKLKDIVVKLREQFHDASFTYVDMFSAKYELISNAIKSGIIFTKFI*