Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0853610 | Msa1015210 | 0.815620 | 8.419897e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 26 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCCCTACTTATGGTGTTGC+TGG | 0.242987 | 7_1:-27145336 | Msa1015210:CDS |
| GGAGATTTGGCCCCTACTTA+TGG | 0.262761 | 7_1:-27145345 | Msa1015210:CDS |
| GAGTCAAAACTTTGGAGATT+TGG | 0.305615 | 7_1:-27145358 | Msa1015210:CDS |
| GTCCCTGCATATGATGTTGC+TGG | 0.411178 | 7_1:-27145299 | Msa1015210:CDS |
| TGCAACTAGAGTCAAAACTT+TGG | 0.486175 | 7_1:-27145366 | Msa1015210:intron |
| CTTTCAGTTTCTACAAACAT+TGG | 0.488573 | 7_1:+27146917 | None:intergenic |
| CCGTACGCCGTAATCTTTCG+TGG | 0.490584 | 7_1:-27146981 | Msa1015210:five_prime_UTR |
| TTTCCAGCAACATCATATGC+AGG | 0.505924 | 7_1:+27145296 | None:intergenic |
| GAGACGACCACGAAAGATTA+CGG | 0.506427 | 7_1:+27146974 | None:intergenic |
| ATCCAGCAACACCATAAGTA+GGG | 0.512928 | 7_1:+27145334 | None:intergenic |
| AATCCAGCAACACCATAAGT+AGG | 0.515125 | 7_1:+27145333 | None:intergenic |
| AGAAGTGTTGAGGTTCAAGT+AGG | 0.527053 | 7_1:+27147029 | None:intergenic |
| AAGAACTTGCCTCACGAACA+TGG | 0.530815 | 7_1:+27146951 | None:intergenic |
| CTACAAACATTGGAGACGGC+GGG | 0.551950 | 7_1:+27146927 | None:intergenic |
| CAATGTTTGTAGAAACTGAA+AGG | 0.559874 | 7_1:-27146916 | Msa1015210:CDS |
| CGAAAGATTACGGCGTACGG+TGG | 0.583408 | 7_1:+27146984 | None:intergenic |
| GTTTCTACAAACATTGGAGA+CGG | 0.585332 | 7_1:+27146923 | None:intergenic |
| CCACGAAAGATTACGGCGTA+CGG | 0.599046 | 7_1:+27146981 | None:intergenic |
| AGAACTTGCCTCACGAACAT+GGG | 0.607473 | 7_1:+27146952 | None:intergenic |
| GAAGTGTTGAGGTTCAAGTA+GGG | 0.613175 | 7_1:+27147030 | None:intergenic |
| GAAAGATTACGGCGTACGGT+GGG | 0.624999 | 7_1:+27146985 | None:intergenic |
| TTCCAGCAACATCATATGCA+GGG | 0.626333 | 7_1:+27145297 | None:intergenic |
| GGTCGTCTCCCATGTTCGTG+AGG | 0.626674 | 7_1:-27146960 | Msa1015210:five_prime_UTR |
| ATGACGAGAGAGAAGTGTTG+AGG | 0.646451 | 7_1:+27147019 | None:intergenic |
| TCCAGCAACACCATAAGTAG+GGG | 0.651113 | 7_1:+27145335 | None:intergenic |
| TCTACAAACATTGGAGACGG+CGG | 0.659466 | 7_1:+27146926 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTCGTAAATTTTTTAGAA+TGG | - | chr7_1:27145680-27145699 | Msa1015210:intron | 15.0% |
| !!! | AATTCGTAAATTTTTTAGAA+TGG | - | chr7_1:27145680-27145699 | Msa1015210:intron | 15.0% |
| !! | TAGTGAAAGACTTAAATTAT+AGG | + | chr7_1:27145333-27145352 | None:intergenic | 20.0% |
| !!! | GAAAAAATTAGGGTTTTTAT+GGG | + | chr7_1:27145389-27145408 | None:intergenic | 20.0% |
| !! | ATTCATACTTTCTTTAACAT+TGG | - | chr7_1:27145743-27145762 | Msa1015210:intron | 20.0% |
| !! | ATTAAGAGACCAATATAAAT+TGG | + | chr7_1:27145788-27145807 | None:intergenic | 20.0% |
| !! | TCATAATGATATGCATTAAT+AGG | - | chr7_1:27145851-27145870 | Msa1015210:intron | 20.0% |
| !!! | ATTTTTTTACCTCAAACTTA+TGG | + | chr7_1:27146061-27146080 | None:intergenic | 20.0% |
| !!! | CAATGTCATGTTTTTTTATT+CGG | - | chr7_1:27146285-27146304 | Msa1015210:intron | 20.0% |
| !! | TAATTATTACGAATGTTGAA+AGG | - | chr7_1:27146314-27146333 | Msa1015210:intron | 20.0% |
| !!! | TATTTTTTGCTTTTCCTTTT+AGG | - | chr7_1:27146723-27146742 | Msa1015210:intron | 20.0% |
| !!! | TTTTTTGCTATTGTGATTTT+AGG | - | chr7_1:27146778-27146797 | Msa1015210:intron | 20.0% |
| !! | TAGTGAAAGACTTAAATTAT+AGG | + | chr7_1:27145333-27145352 | None:intergenic | 20.0% |
| !!! | GAAAAAATTAGGGTTTTTAT+GGG | + | chr7_1:27145389-27145408 | None:intergenic | 20.0% |
| !! | ATTCATACTTTCTTTAACAT+TGG | - | chr7_1:27145743-27145762 | Msa1015210:intron | 20.0% |
| !! | ATTAAGAGACCAATATAAAT+TGG | + | chr7_1:27145788-27145807 | None:intergenic | 20.0% |
| !! | TCATAATGATATGCATTAAT+AGG | - | chr7_1:27145851-27145870 | Msa1015210:intron | 20.0% |
| !!! | ATTTTTTTACCTCAAACTTA+TGG | + | chr7_1:27146061-27146080 | None:intergenic | 20.0% |
| !!! | CAATGTCATGTTTTTTTATT+CGG | - | chr7_1:27146285-27146304 | Msa1015210:intron | 20.0% |
| !! | TAATTATTACGAATGTTGAA+AGG | - | chr7_1:27146314-27146333 | Msa1015210:intron | 20.0% |
| !!! | TATTTTTTGCTTTTCCTTTT+AGG | - | chr7_1:27146723-27146742 | Msa1015210:intron | 20.0% |
| !!! | TTTTTTGCTATTGTGATTTT+AGG | - | chr7_1:27146778-27146797 | Msa1015210:intron | 20.0% |
| !! | GGAAAAAATTAGGGTTTTTA+TGG | + | chr7_1:27145390-27145409 | None:intergenic | 25.0% |
| !!! | CTAATTTTTTGTGTGTATCA+AGG | - | chr7_1:27145488-27145507 | Msa1015210:intron | 25.0% |
| !!! | TGATATATTTGGCTTTTAAC+TGG | - | chr7_1:27145635-27145654 | Msa1015210:intron | 25.0% |
| !! | AAATTTACGAATTTTACTCC+TGG | + | chr7_1:27145673-27145692 | None:intergenic | 25.0% |
| ! | ATACCAGTTCCAATTTATAT+TGG | - | chr7_1:27145776-27145795 | Msa1015210:intron | 25.0% |
| ! | TCTTAATATTGTAACCATGA+GGG | - | chr7_1:27145801-27145820 | Msa1015210:intron | 25.0% |
| !! | AAAAGTAATTTTGTGTGAGT+TGG | + | chr7_1:27146223-27146242 | None:intergenic | 25.0% |
| !!! | CACATGTTTTACTTTGAAAA+AGG | + | chr7_1:27146429-27146448 | None:intergenic | 25.0% |
| ! | AATATGAAAACCAACCTAAA+AGG | + | chr7_1:27146740-27146759 | None:intergenic | 25.0% |
| !! | TTGCTTCATATTTTGTAAAG+AGG | - | chr7_1:27146911-27146930 | Msa1015210:CDS | 25.0% |
| !! | GGAAAAAATTAGGGTTTTTA+TGG | + | chr7_1:27145390-27145409 | None:intergenic | 25.0% |
| !!! | CTAATTTTTTGTGTGTATCA+AGG | - | chr7_1:27145488-27145507 | Msa1015210:intron | 25.0% |
| !!! | TGATATATTTGGCTTTTAAC+TGG | - | chr7_1:27145635-27145654 | Msa1015210:intron | 25.0% |
| !! | AAATTTACGAATTTTACTCC+TGG | + | chr7_1:27145673-27145692 | None:intergenic | 25.0% |
| ! | ATACCAGTTCCAATTTATAT+TGG | - | chr7_1:27145776-27145795 | Msa1015210:intron | 25.0% |
| ! | TCTTAATATTGTAACCATGA+GGG | - | chr7_1:27145801-27145820 | Msa1015210:intron | 25.0% |
| !! | AAAAGTAATTTTGTGTGAGT+TGG | + | chr7_1:27146223-27146242 | None:intergenic | 25.0% |
| !!! | CACATGTTTTACTTTGAAAA+AGG | + | chr7_1:27146429-27146448 | None:intergenic | 25.0% |
| ! | AATATGAAAACCAACCTAAA+AGG | + | chr7_1:27146740-27146759 | None:intergenic | 25.0% |
| !! | TTGCTTCATATTTTGTAAAG+AGG | - | chr7_1:27146911-27146930 | Msa1015210:CDS | 25.0% |
| CTTTCAGTTTCTACAAACAT+TGG | + | chr7_1:27145268-27145287 | None:intergenic | 30.0% | |
| CAATGTTTGTAGAAACTGAA+AGG | - | chr7_1:27145266-27145285 | Msa1015210:intron | 30.0% | |
| GATGAGAAGGGAAAAAATTA+GGG | + | chr7_1:27145399-27145418 | None:intergenic | 30.0% | |
| ! | TATTAATTTTGCGTGTGTCA+AGG | - | chr7_1:27145440-27145459 | Msa1015210:intron | 30.0% |
| GCCTTTATGTGTGATATATT+TGG | - | chr7_1:27145624-27145643 | Msa1015210:intron | 30.0% | |
| GCCAAATATATCACACATAA+AGG | + | chr7_1:27145628-27145647 | None:intergenic | 30.0% | |
| AGACCAATATAAATTGGAAC+TGG | + | chr7_1:27145782-27145801 | None:intergenic | 30.0% | |
| CTCTTAATATTGTAACCATG+AGG | - | chr7_1:27145800-27145819 | Msa1015210:intron | 30.0% | |
| CTTAATATTGTAACCATGAG+GGG | - | chr7_1:27145802-27145821 | Msa1015210:intron | 30.0% | |
| ! | AAGGTTTCAAGTCACTTTAT+TGG | - | chr7_1:27146023-27146042 | Msa1015210:intron | 30.0% |
| GATAAAAATTGCCATCAAAC+AGG | + | chr7_1:27146118-27146137 | None:intergenic | 30.0% | |
| ! | TTTTTATCCTTCAACTGGAT+AGG | - | chr7_1:27146130-27146149 | Msa1015210:intron | 30.0% |
| TTCTGGTAGTAATGATAATC+AGG | - | chr7_1:27146193-27146212 | Msa1015210:intron | 30.0% | |
| AAAACATGACATTGAACAAG+AGG | + | chr7_1:27146279-27146298 | None:intergenic | 30.0% | |
| ! | TTTCTTATATGAGCAGCTTT+TGG | - | chr7_1:27146493-27146512 | Msa1015210:intron | 30.0% |
| !! | TTTTGCTTTTCCTTTTAGGT+TGG | - | chr7_1:27146727-27146746 | Msa1015210:intron | 30.0% |
| !! | GTTGCTGGATTTTAAAGATT+TGG | - | chr7_1:27146861-27146880 | Msa1015210:intron | 30.0% |
| ATTTCTTGCTTTCATTTCGA+AGG | + | chr7_1:27146946-27146965 | None:intergenic | 30.0% | |
| CTTTCAGTTTCTACAAACAT+TGG | + | chr7_1:27145268-27145287 | None:intergenic | 30.0% | |
| CAATGTTTGTAGAAACTGAA+AGG | - | chr7_1:27145266-27145285 | Msa1015210:intron | 30.0% | |
| GATGAGAAGGGAAAAAATTA+GGG | + | chr7_1:27145399-27145418 | None:intergenic | 30.0% | |
| ! | TATTAATTTTGCGTGTGTCA+AGG | - | chr7_1:27145440-27145459 | Msa1015210:intron | 30.0% |
| GCCTTTATGTGTGATATATT+TGG | - | chr7_1:27145624-27145643 | Msa1015210:intron | 30.0% | |
| GCCAAATATATCACACATAA+AGG | + | chr7_1:27145628-27145647 | None:intergenic | 30.0% | |
| AGACCAATATAAATTGGAAC+TGG | + | chr7_1:27145782-27145801 | None:intergenic | 30.0% | |
| CTCTTAATATTGTAACCATG+AGG | - | chr7_1:27145800-27145819 | Msa1015210:intron | 30.0% | |
| CTTAATATTGTAACCATGAG+GGG | - | chr7_1:27145802-27145821 | Msa1015210:intron | 30.0% | |
| ! | AAGGTTTCAAGTCACTTTAT+TGG | - | chr7_1:27146023-27146042 | Msa1015210:intron | 30.0% |
| GATAAAAATTGCCATCAAAC+AGG | + | chr7_1:27146118-27146137 | None:intergenic | 30.0% | |
| ! | TTTTTATCCTTCAACTGGAT+AGG | - | chr7_1:27146130-27146149 | Msa1015210:intron | 30.0% |
| TTCTGGTAGTAATGATAATC+AGG | - | chr7_1:27146193-27146212 | Msa1015210:intron | 30.0% | |
| AAAACATGACATTGAACAAG+AGG | + | chr7_1:27146279-27146298 | None:intergenic | 30.0% | |
| ! | TTTCTTATATGAGCAGCTTT+TGG | - | chr7_1:27146493-27146512 | Msa1015210:intron | 30.0% |
| !! | TTTTGCTTTTCCTTTTAGGT+TGG | - | chr7_1:27146727-27146746 | Msa1015210:intron | 30.0% |
| !! | GTTGCTGGATTTTAAAGATT+TGG | - | chr7_1:27146861-27146880 | Msa1015210:intron | 30.0% |
| ATTTCTTGCTTTCATTTCGA+AGG | + | chr7_1:27146946-27146965 | None:intergenic | 30.0% | |
| GTTTCTACAAACATTGGAGA+CGG | + | chr7_1:27145262-27145281 | None:intergenic | 35.0% | |
| GGATGAGAAGGGAAAAAATT+AGG | + | chr7_1:27145400-27145419 | None:intergenic | 35.0% | |
| TACCCAACCAAAGCAAAATT+GGG | + | chr7_1:27145422-27145441 | None:intergenic | 35.0% | |
| ATACCCAACCAAAGCAAAAT+TGG | + | chr7_1:27145423-27145442 | None:intergenic | 35.0% | |
| ATGTTCTATGCTTAACATGC+AGG | - | chr7_1:27145516-27145535 | Msa1015210:intron | 35.0% | |
| ! | TATCACACATAAAGGCATGA+CGG | + | chr7_1:27145620-27145639 | None:intergenic | 35.0% |
| !! | AACTGGTTTGTTAAGATTCC+AGG | - | chr7_1:27145652-27145671 | Msa1015210:intron | 35.0% |
| TAGATATAATAAGCCCCTCA+TGG | + | chr7_1:27145818-27145837 | None:intergenic | 35.0% | |
| AGGGGCTTATTATATCTATC+TGG | - | chr7_1:27145820-27145839 | Msa1015210:intron | 35.0% | |
| ACAACACCTGAAATATACTC+TGG | - | chr7_1:27145916-27145935 | Msa1015210:intron | 35.0% | |
| CATACTTCAACATGACATGA+AGG | - | chr7_1:27146004-27146023 | Msa1015210:intron | 35.0% | |
| TAGCACTAATTCCTGTTTGA+TGG | - | chr7_1:27146104-27146123 | Msa1015210:intron | 35.0% | |
| ! | GGCAATTTTTATCCTTCAAC+TGG | - | chr7_1:27146125-27146144 | Msa1015210:intron | 35.0% |
| ! | CACAACTCAACTTTGATTTC+TGG | - | chr7_1:27146378-27146397 | Msa1015210:intron | 35.0% |
| ! | AGGAAAAAACCTGTCATTTG+TGG | + | chr7_1:27146409-27146428 | None:intergenic | 35.0% |
| ! | TATATGAGCAGCTTTTGGTA+TGG | - | chr7_1:27146498-27146517 | Msa1015210:intron | 35.0% |
| ! | ATGTTAGTCTCAAAGTTGGT+TGG | + | chr7_1:27146536-27146555 | None:intergenic | 35.0% |
| ! | TGCTATGTTAGTCTCAAAGT+TGG | + | chr7_1:27146540-27146559 | None:intergenic | 35.0% |
| ! | CTGATAGGTGTATTCTTTTC+TGG | - | chr7_1:27146628-27146647 | Msa1015210:intron | 35.0% |
| TGAGCTACAAATGCTACATT+GGG | - | chr7_1:27146683-27146702 | Msa1015210:intron | 35.0% | |
| TGCAACTAGAGTCAAAACTT+TGG | - | chr7_1:27146816-27146835 | Msa1015210:intron | 35.0% | |
| ! | GAGTCAAAACTTTGGAGATT+TGG | - | chr7_1:27146824-27146843 | Msa1015210:intron | 35.0% |
| GTTTCTACAAACATTGGAGA+CGG | + | chr7_1:27145262-27145281 | None:intergenic | 35.0% | |
| GGATGAGAAGGGAAAAAATT+AGG | + | chr7_1:27145400-27145419 | None:intergenic | 35.0% | |
| TACCCAACCAAAGCAAAATT+GGG | + | chr7_1:27145422-27145441 | None:intergenic | 35.0% | |
| ATACCCAACCAAAGCAAAAT+TGG | + | chr7_1:27145423-27145442 | None:intergenic | 35.0% | |
| ATGTTCTATGCTTAACATGC+AGG | - | chr7_1:27145516-27145535 | Msa1015210:intron | 35.0% | |
| ! | TATCACACATAAAGGCATGA+CGG | + | chr7_1:27145620-27145639 | None:intergenic | 35.0% |
| !! | AACTGGTTTGTTAAGATTCC+AGG | - | chr7_1:27145652-27145671 | Msa1015210:intron | 35.0% |
| TAGATATAATAAGCCCCTCA+TGG | + | chr7_1:27145818-27145837 | None:intergenic | 35.0% | |
| AGGGGCTTATTATATCTATC+TGG | - | chr7_1:27145820-27145839 | Msa1015210:intron | 35.0% | |
| ACAACACCTGAAATATACTC+TGG | - | chr7_1:27145916-27145935 | Msa1015210:intron | 35.0% | |
| CATACTTCAACATGACATGA+AGG | - | chr7_1:27146004-27146023 | Msa1015210:intron | 35.0% | |
| TAGCACTAATTCCTGTTTGA+TGG | - | chr7_1:27146104-27146123 | Msa1015210:intron | 35.0% | |
| ! | GGCAATTTTTATCCTTCAAC+TGG | - | chr7_1:27146125-27146144 | Msa1015210:intron | 35.0% |
| ! | CACAACTCAACTTTGATTTC+TGG | - | chr7_1:27146378-27146397 | Msa1015210:intron | 35.0% |
| ! | AGGAAAAAACCTGTCATTTG+TGG | + | chr7_1:27146409-27146428 | None:intergenic | 35.0% |
| ! | TATATGAGCAGCTTTTGGTA+TGG | - | chr7_1:27146498-27146517 | Msa1015210:intron | 35.0% |
| ! | ATGTTAGTCTCAAAGTTGGT+TGG | + | chr7_1:27146536-27146555 | None:intergenic | 35.0% |
| ! | TGCTATGTTAGTCTCAAAGT+TGG | + | chr7_1:27146540-27146559 | None:intergenic | 35.0% |
| ! | CTGATAGGTGTATTCTTTTC+TGG | - | chr7_1:27146628-27146647 | Msa1015210:intron | 35.0% |
| TGAGCTACAAATGCTACATT+GGG | - | chr7_1:27146683-27146702 | Msa1015210:intron | 35.0% | |
| TGCAACTAGAGTCAAAACTT+TGG | - | chr7_1:27146816-27146835 | Msa1015210:intron | 35.0% | |
| ! | GAGTCAAAACTTTGGAGATT+TGG | - | chr7_1:27146824-27146843 | Msa1015210:intron | 35.0% |
| !! | GAAGTGTTGAGGTTCAAGTA+GGG | + | chr7_1:27145155-27145174 | None:intergenic | 40.0% |
| !! | AGAAGTGTTGAGGTTCAAGT+AGG | + | chr7_1:27145156-27145175 | None:intergenic | 40.0% |
| AGCAAAATTGGGGATGAGAA+GGG | + | chr7_1:27145411-27145430 | None:intergenic | 40.0% | |
| AAGCAAAATTGGGGATGAGA+AGG | + | chr7_1:27145412-27145431 | None:intergenic | 40.0% | |
| ! | TCTCATCCCCAATTTTGCTT+TGG | - | chr7_1:27145412-27145431 | Msa1015210:intron | 40.0% |
| ! | ATCCCCAATTTTGCTTTGGT+TGG | - | chr7_1:27145416-27145435 | Msa1015210:intron | 40.0% |
| ! | TCCCCAATTTTGCTTTGGTT+GGG | - | chr7_1:27145417-27145436 | Msa1015210:intron | 40.0% |
| ACCCAACCAAAGCAAAATTG+GGG | + | chr7_1:27145421-27145440 | None:intergenic | 40.0% | |
| ! | CATAAAGGCATGACGGTAAA+TGG | + | chr7_1:27145613-27145632 | None:intergenic | 40.0% |
| ACACCTGAAATATACTCTGG+TGG | - | chr7_1:27145919-27145938 | Msa1015210:intron | 40.0% | |
| CAACCACCAGAGTATATTTC+AGG | + | chr7_1:27145925-27145944 | None:intergenic | 40.0% | |
| ! | GCTTGTTAGCCATAAGTTTG+AGG | - | chr7_1:27146049-27146068 | Msa1015210:intron | 40.0% |
| AACTGGATAGGTATGTGGAT+AGG | - | chr7_1:27146142-27146161 | Msa1015210:intron | 40.0% | |
| GATAGGTATGTGGATAGGAA+TGG | - | chr7_1:27146147-27146166 | Msa1015210:intron | 40.0% | |
| !! | GATGACAGATAACTTGCTTC+TGG | - | chr7_1:27146176-27146195 | Msa1015210:intron | 40.0% |
| TGAAAGGACGAAACACACAA+AGG | - | chr7_1:27146330-27146349 | Msa1015210:intron | 40.0% | |
| GAAAGGACGAAACACACAAA+GGG | - | chr7_1:27146331-27146350 | Msa1015210:intron | 40.0% | |
| AAAGGACGAAACACACAAAG+GGG | - | chr7_1:27146332-27146351 | Msa1015210:intron | 40.0% | |
| CACACAAAGGGGTAATTGAA+AGG | - | chr7_1:27146343-27146362 | Msa1015210:intron | 40.0% | |
| CTGGAAAAACCACAAATGAC+AGG | - | chr7_1:27146397-27146416 | Msa1015210:intron | 40.0% | |
| ATAGCATACTGCTACTGTGA+AGG | - | chr7_1:27146554-27146573 | Msa1015210:intron | 40.0% | |
| ACACAAGGTTTCTATGGTGA+GGG | + | chr7_1:27146593-27146612 | None:intergenic | 40.0% | |
| GTGAGCTACAAATGCTACAT+TGG | - | chr7_1:27146682-27146701 | Msa1015210:intron | 40.0% | |
| ATCCAGCAACACCATAAGTA+GGG | + | chr7_1:27146851-27146870 | None:intergenic | 40.0% | |
| AATCCAGCAACACCATAAGT+AGG | + | chr7_1:27146852-27146871 | None:intergenic | 40.0% | |
| TTCCAGCAACATCATATGCA+GGG | + | chr7_1:27146888-27146907 | None:intergenic | 40.0% | |
| TTTCCAGCAACATCATATGC+AGG | + | chr7_1:27146889-27146908 | None:intergenic | 40.0% | |
| !! | GAAGTGTTGAGGTTCAAGTA+GGG | + | chr7_1:27145155-27145174 | None:intergenic | 40.0% |
| !! | AGAAGTGTTGAGGTTCAAGT+AGG | + | chr7_1:27145156-27145175 | None:intergenic | 40.0% |
| AGCAAAATTGGGGATGAGAA+GGG | + | chr7_1:27145411-27145430 | None:intergenic | 40.0% | |
| AAGCAAAATTGGGGATGAGA+AGG | + | chr7_1:27145412-27145431 | None:intergenic | 40.0% | |
| ! | TCTCATCCCCAATTTTGCTT+TGG | - | chr7_1:27145412-27145431 | Msa1015210:intron | 40.0% |
| ! | ATCCCCAATTTTGCTTTGGT+TGG | - | chr7_1:27145416-27145435 | Msa1015210:intron | 40.0% |
| ! | TCCCCAATTTTGCTTTGGTT+GGG | - | chr7_1:27145417-27145436 | Msa1015210:intron | 40.0% |
| ACCCAACCAAAGCAAAATTG+GGG | + | chr7_1:27145421-27145440 | None:intergenic | 40.0% | |
| ! | CATAAAGGCATGACGGTAAA+TGG | + | chr7_1:27145613-27145632 | None:intergenic | 40.0% |
| ACACCTGAAATATACTCTGG+TGG | - | chr7_1:27145919-27145938 | Msa1015210:intron | 40.0% | |
| CAACCACCAGAGTATATTTC+AGG | + | chr7_1:27145925-27145944 | None:intergenic | 40.0% | |
| ! | GCTTGTTAGCCATAAGTTTG+AGG | - | chr7_1:27146049-27146068 | Msa1015210:intron | 40.0% |
| AACTGGATAGGTATGTGGAT+AGG | - | chr7_1:27146142-27146161 | Msa1015210:intron | 40.0% | |
| GATAGGTATGTGGATAGGAA+TGG | - | chr7_1:27146147-27146166 | Msa1015210:intron | 40.0% | |
| !! | GATGACAGATAACTTGCTTC+TGG | - | chr7_1:27146176-27146195 | Msa1015210:intron | 40.0% |
| TGAAAGGACGAAACACACAA+AGG | - | chr7_1:27146330-27146349 | Msa1015210:intron | 40.0% | |
| GAAAGGACGAAACACACAAA+GGG | - | chr7_1:27146331-27146350 | Msa1015210:intron | 40.0% | |
| AAAGGACGAAACACACAAAG+GGG | - | chr7_1:27146332-27146351 | Msa1015210:intron | 40.0% | |
| CACACAAAGGGGTAATTGAA+AGG | - | chr7_1:27146343-27146362 | Msa1015210:intron | 40.0% | |
| CTGGAAAAACCACAAATGAC+AGG | - | chr7_1:27146397-27146416 | Msa1015210:intron | 40.0% | |
| ATAGCATACTGCTACTGTGA+AGG | - | chr7_1:27146554-27146573 | Msa1015210:intron | 40.0% | |
| ACACAAGGTTTCTATGGTGA+GGG | + | chr7_1:27146593-27146612 | None:intergenic | 40.0% | |
| GTGAGCTACAAATGCTACAT+TGG | - | chr7_1:27146682-27146701 | Msa1015210:intron | 40.0% | |
| ATCCAGCAACACCATAAGTA+GGG | + | chr7_1:27146851-27146870 | None:intergenic | 40.0% | |
| AATCCAGCAACACCATAAGT+AGG | + | chr7_1:27146852-27146871 | None:intergenic | 40.0% | |
| TTCCAGCAACATCATATGCA+GGG | + | chr7_1:27146888-27146907 | None:intergenic | 40.0% | |
| TTTCCAGCAACATCATATGC+AGG | + | chr7_1:27146889-27146908 | None:intergenic | 40.0% | |
| !! | ATGACGAGAGAGAAGTGTTG+AGG | + | chr7_1:27145166-27145185 | None:intergenic | 45.0% |
| GAGACGACCACGAAAGATTA+CGG | + | chr7_1:27145211-27145230 | None:intergenic | 45.0% | |
| AGAACTTGCCTCACGAACAT+GGG | + | chr7_1:27145233-27145252 | None:intergenic | 45.0% | |
| AAGAACTTGCCTCACGAACA+TGG | + | chr7_1:27145234-27145253 | None:intergenic | 45.0% | |
| TCTACAAACATTGGAGACGG+CGG | + | chr7_1:27145259-27145278 | None:intergenic | 45.0% | |
| !! | TTTTTCAGCAACGATGAGGG+AGG | + | chr7_1:27145299-27145318 | None:intergenic | 45.0% |
| !! | GCGTTTTTCAGCAACGATGA+GGG | + | chr7_1:27145302-27145321 | None:intergenic | 45.0% |
| !! | TGCGTTTTTCAGCAACGATG+AGG | + | chr7_1:27145303-27145322 | None:intergenic | 45.0% |
| TCATCGTTGCTGAAAAACGC+AGG | - | chr7_1:27145302-27145321 | Msa1015210:CDS | 45.0% | |
| TTTGCGTGTGTCAAGGATTC+AGG | - | chr7_1:27145447-27145466 | Msa1015210:intron | 45.0% | |
| ! | GCATGGAACTCTCGCATTTT+TGG | - | chr7_1:27145959-27145978 | Msa1015210:intron | 45.0% |
| !!! | ACTCTCGCATTTTTGGCTTC+AGG | - | chr7_1:27145966-27145985 | Msa1015210:intron | 45.0% |
| TGGCTTCAGGCAGTATGTAT+AGG | - | chr7_1:27145979-27145998 | Msa1015210:intron | 45.0% | |
| CCACATACCTATCCAGTTGA+AGG | + | chr7_1:27146140-27146159 | None:intergenic | 45.0% | |
| CCTTCAACTGGATAGGTATG+TGG | - | chr7_1:27146137-27146156 | Msa1015210:intron | 45.0% | |
| CACAAGGTTTCTATGGTGAG+GGG | + | chr7_1:27146592-27146611 | None:intergenic | 45.0% | |
| GACACAAGGTTTCTATGGTG+AGG | + | chr7_1:27146594-27146613 | None:intergenic | 45.0% | |
| CACCATAGAAACCTTGTGTC+CGG | - | chr7_1:27146594-27146613 | Msa1015210:intron | 45.0% | |
| GTAGCTCACAAGACACAAGA+TGG | + | chr7_1:27146671-27146690 | None:intergenic | 45.0% | |
| GCTACAAATGCTACATTGGG+AGG | - | chr7_1:27146686-27146705 | Msa1015210:intron | 45.0% | |
| TCCAGCAACACCATAAGTAG+GGG | + | chr7_1:27146850-27146869 | None:intergenic | 45.0% | |
| !! | ATGACGAGAGAGAAGTGTTG+AGG | + | chr7_1:27145166-27145185 | None:intergenic | 45.0% |
| GAGACGACCACGAAAGATTA+CGG | + | chr7_1:27145211-27145230 | None:intergenic | 45.0% | |
| AGAACTTGCCTCACGAACAT+GGG | + | chr7_1:27145233-27145252 | None:intergenic | 45.0% | |
| AAGAACTTGCCTCACGAACA+TGG | + | chr7_1:27145234-27145253 | None:intergenic | 45.0% | |
| TCTACAAACATTGGAGACGG+CGG | + | chr7_1:27145259-27145278 | None:intergenic | 45.0% | |
| !! | TTTTTCAGCAACGATGAGGG+AGG | + | chr7_1:27145299-27145318 | None:intergenic | 45.0% |
| !! | GCGTTTTTCAGCAACGATGA+GGG | + | chr7_1:27145302-27145321 | None:intergenic | 45.0% |
| !! | TGCGTTTTTCAGCAACGATG+AGG | + | chr7_1:27145303-27145322 | None:intergenic | 45.0% |
| TCATCGTTGCTGAAAAACGC+AGG | - | chr7_1:27145302-27145321 | Msa1015210:CDS | 45.0% | |
| TTTGCGTGTGTCAAGGATTC+AGG | - | chr7_1:27145447-27145466 | Msa1015210:intron | 45.0% | |
| ! | GCATGGAACTCTCGCATTTT+TGG | - | chr7_1:27145959-27145978 | Msa1015210:intron | 45.0% |
| !!! | ACTCTCGCATTTTTGGCTTC+AGG | - | chr7_1:27145966-27145985 | Msa1015210:intron | 45.0% |
| TGGCTTCAGGCAGTATGTAT+AGG | - | chr7_1:27145979-27145998 | Msa1015210:intron | 45.0% | |
| CCACATACCTATCCAGTTGA+AGG | + | chr7_1:27146140-27146159 | None:intergenic | 45.0% | |
| CCTTCAACTGGATAGGTATG+TGG | - | chr7_1:27146137-27146156 | Msa1015210:intron | 45.0% | |
| CACAAGGTTTCTATGGTGAG+GGG | + | chr7_1:27146592-27146611 | None:intergenic | 45.0% | |
| GACACAAGGTTTCTATGGTG+AGG | + | chr7_1:27146594-27146613 | None:intergenic | 45.0% | |
| CACCATAGAAACCTTGTGTC+CGG | - | chr7_1:27146594-27146613 | Msa1015210:intron | 45.0% | |
| GTAGCTCACAAGACACAAGA+TGG | + | chr7_1:27146671-27146690 | None:intergenic | 45.0% | |
| GCTACAAATGCTACATTGGG+AGG | - | chr7_1:27146686-27146705 | Msa1015210:intron | 45.0% | |
| TCCAGCAACACCATAAGTAG+GGG | + | chr7_1:27146850-27146869 | None:intergenic | 45.0% | |
| GAAAGATTACGGCGTACGGT+GGG | + | chr7_1:27145200-27145219 | None:intergenic | 50.0% | |
| CCACGAAAGATTACGGCGTA+CGG | + | chr7_1:27145204-27145223 | None:intergenic | 50.0% | |
| CTACAAACATTGGAGACGGC+GGG | + | chr7_1:27145258-27145277 | None:intergenic | 50.0% | |
| CTGGTGGTTGTGAATAGAGC+TGG | - | chr7_1:27145935-27145954 | Msa1015210:intron | 50.0% | |
| TTGTGAATAGAGCTGGCGCA+TGG | - | chr7_1:27145942-27145961 | Msa1015210:intron | 50.0% | |
| CTACTGTGAAGGCTAGTGCT+TGG | - | chr7_1:27146565-27146584 | Msa1015210:intron | 50.0% | |
| CTCCGGACACAAGGTTTCTA+TGG | + | chr7_1:27146599-27146618 | None:intergenic | 50.0% | |
| CATAGAAACCTTGTGTCCGG+AGG | - | chr7_1:27146597-27146616 | Msa1015210:intron | 50.0% | |
| GCTCACAAGACACAAGATGG+TGG | + | chr7_1:27146668-27146687 | None:intergenic | 50.0% | |
| GGAGATTTGGCCCCTACTTA+TGG | - | chr7_1:27146837-27146856 | Msa1015210:intron | 50.0% | |
| GTCCCTGCATATGATGTTGC+TGG | - | chr7_1:27146883-27146902 | Msa1015210:CDS | 50.0% | |
| GAAAGATTACGGCGTACGGT+GGG | + | chr7_1:27145200-27145219 | None:intergenic | 50.0% | |
| CCACGAAAGATTACGGCGTA+CGG | + | chr7_1:27145204-27145223 | None:intergenic | 50.0% | |
| CTACAAACATTGGAGACGGC+GGG | + | chr7_1:27145258-27145277 | None:intergenic | 50.0% | |
| CTGGTGGTTGTGAATAGAGC+TGG | - | chr7_1:27145935-27145954 | Msa1015210:intron | 50.0% | |
| TTGTGAATAGAGCTGGCGCA+TGG | - | chr7_1:27145942-27145961 | Msa1015210:intron | 50.0% | |
| CTACTGTGAAGGCTAGTGCT+TGG | - | chr7_1:27146565-27146584 | Msa1015210:intron | 50.0% | |
| CTCCGGACACAAGGTTTCTA+TGG | + | chr7_1:27146599-27146618 | None:intergenic | 50.0% | |
| CATAGAAACCTTGTGTCCGG+AGG | - | chr7_1:27146597-27146616 | Msa1015210:intron | 50.0% | |
| GCTCACAAGACACAAGATGG+TGG | + | chr7_1:27146668-27146687 | None:intergenic | 50.0% | |
| GGAGATTTGGCCCCTACTTA+TGG | - | chr7_1:27146837-27146856 | Msa1015210:intron | 50.0% | |
| GTCCCTGCATATGATGTTGC+TGG | - | chr7_1:27146883-27146902 | Msa1015210:CDS | 50.0% | |
| CGAAAGATTACGGCGTACGG+TGG | + | chr7_1:27145201-27145220 | None:intergenic | 55.0% | |
| CCGTACGCCGTAATCTTTCG+TGG | - | chr7_1:27145201-27145220 | Msa1015210:intron | 55.0% | |
| AGAAACCTTGTGTCCGGAGG+TGG | - | chr7_1:27146600-27146619 | Msa1015210:intron | 55.0% | |
| CCTATCAGCAGTTCCACCTC+CGG | + | chr7_1:27146616-27146635 | None:intergenic | 55.0% | |
| !! | GCCCCTACTTATGGTGTTGC+TGG | - | chr7_1:27146846-27146865 | Msa1015210:intron | 55.0% |
| CGAAAGATTACGGCGTACGG+TGG | + | chr7_1:27145201-27145220 | None:intergenic | 55.0% | |
| CCGTACGCCGTAATCTTTCG+TGG | - | chr7_1:27145201-27145220 | Msa1015210:intron | 55.0% | |
| AGAAACCTTGTGTCCGGAGG+TGG | - | chr7_1:27146600-27146619 | Msa1015210:intron | 55.0% | |
| CCTATCAGCAGTTCCACCTC+CGG | + | chr7_1:27146616-27146635 | None:intergenic | 55.0% | |
| !! | GCCCCTACTTATGGTGTTGC+TGG | - | chr7_1:27146846-27146865 | Msa1015210:intron | 55.0% |
| GGTCGTCTCCCATGTTCGTG+AGG | - | chr7_1:27145222-27145241 | Msa1015210:intron | 60.0% | |
| CAGTTCCACCTCCGGACACA+AGG | + | chr7_1:27146608-27146627 | None:intergenic | 60.0% | |
| CCGGAGGTGGAACTGCTGAT+AGG | - | chr7_1:27146613-27146632 | Msa1015210:intron | 60.0% | |
| GGTCGTCTCCCATGTTCGTG+AGG | - | chr7_1:27145222-27145241 | Msa1015210:intron | 60.0% | |
| CAGTTCCACCTCCGGACACA+AGG | + | chr7_1:27146608-27146627 | None:intergenic | 60.0% | |
| CCGGAGGTGGAACTGCTGAT+AGG | - | chr7_1:27146613-27146632 | Msa1015210:intron | 60.0% | |
| TACGGCGTACGGTGGGAGAC+AGG | + | chr7_1:27145193-27145212 | None:intergenic | 65.0% | |
| TACGGCGTACGGTGGGAGAC+AGG | + | chr7_1:27145193-27145212 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 27145135 | 27147069 | 27145135 | ID=Msa1015210;Name=Msa1015210 |
| chr7_1 | mRNA | 27145135 | 27147069 | 27145135 | ID=Msa1015210-mRNA-1;Parent=Msa1015210;Name=Msa1015210-mRNA-1;_AED=0.37;_eAED=0.37;_QI=133|0|0.33|1|0|0|3|0|66 |
| chr7_1 | exon | 27145135 | 27145171 | 27145135 | ID=Msa1015210-mRNA-1:exon:5797;Parent=Msa1015210-mRNA-1 |
| chr7_1 | exon | 27145272 | 27145379 | 27145272 | ID=Msa1015210-mRNA-1:exon:5796;Parent=Msa1015210-mRNA-1 |
| chr7_1 | exon | 27146881 | 27147069 | 27146881 | ID=Msa1015210-mRNA-1:exon:5795;Parent=Msa1015210-mRNA-1 |
| chr7_1 | five_prime_UTR | 27146937 | 27147069 | 27146937 | ID=Msa1015210-mRNA-1:five_prime_utr;Parent=Msa1015210-mRNA-1 |
| chr7_1 | CDS | 27146881 | 27146936 | 27146881 | ID=Msa1015210-mRNA-1:cds;Parent=Msa1015210-mRNA-1 |
| chr7_1 | CDS | 27145272 | 27145379 | 27145272 | ID=Msa1015210-mRNA-1:cds;Parent=Msa1015210-mRNA-1 |
| chr7_1 | CDS | 27145135 | 27145171 | 27145135 | ID=Msa1015210-mRNA-1:cds;Parent=Msa1015210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
