Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1017690 | AFK37618.1 | 95.882 | 170 | 7 | 0 | 1 | 170 | 1 | 170 | 2.96e-119 | 344 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1017690 | sp|Q8L910|GPX4_ARATH | 69.412 | 170 | 52 | 0 | 1 | 170 | 1 | 170 | 6.01e-88 | 257 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1017690 | I3SBH6 | 95.882 | 170 | 7 | 0 | 1 | 170 | 1 | 170 | 1.41e-119 | 344 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1017690 | Msa1117130 | 0.924061 | 1.164200e-89 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1017690 | MtrunA17_Chr7g0259611 | 95.882 | 170 | 7 | 0 | 1 | 170 | 1 | 170 | 2.72e-123 | 344 |
| Msa1017690 | MtrunA17_Chr1g0185791 | 72.619 | 168 | 45 | 1 | 1 | 167 | 1 | 168 | 6.25e-93 | 267 |
| Msa1017690 | MtrunA17_Chr8g0386721 | 66.879 | 157 | 52 | 0 | 11 | 167 | 9 | 165 | 3.34e-79 | 232 |
| Msa1017690 | MtrunA17_Chr1g0150061 | 61.212 | 165 | 64 | 0 | 4 | 168 | 71 | 235 | 2.11e-76 | 228 |
| Msa1017690 | MtrunA17_Chr8g0391921 | 58.929 | 168 | 66 | 1 | 3 | 167 | 55 | 222 | 1.71e-72 | 217 |
| Msa1017690 | MtrunA17_Chr8g0386731 | 60.000 | 165 | 66 | 0 | 4 | 168 | 6 | 170 | 1.08e-71 | 213 |
| Msa1017690 | MtrunA17_Chr5g0397561 | 57.143 | 161 | 68 | 1 | 9 | 168 | 9 | 169 | 8.50e-66 | 199 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1017690 | AT2G48150.1 | 69.412 | 170 | 52 | 0 | 1 | 170 | 1 | 170 | 6.11e-89 | 257 |
| Msa1017690 | AT3G63080.1 | 70.253 | 158 | 47 | 0 | 12 | 169 | 14 | 171 | 2.10e-85 | 248 |
| Msa1017690 | AT4G11600.1 | 67.089 | 158 | 52 | 0 | 11 | 168 | 72 | 229 | 1.51e-79 | 236 |
| Msa1017690 | AT4G31870.1 | 62.424 | 165 | 62 | 0 | 4 | 168 | 68 | 232 | 5.89e-78 | 232 |
| Msa1017690 | AT2G25080.1 | 61.212 | 165 | 64 | 0 | 4 | 168 | 71 | 235 | 5.35e-77 | 229 |
| Msa1017690 | AT2G31570.1 | 64.417 | 163 | 58 | 0 | 8 | 170 | 5 | 167 | 6.17e-77 | 227 |
| Msa1017690 | AT2G48150.2 | 70.139 | 144 | 43 | 0 | 27 | 170 | 1 | 144 | 2.48e-74 | 219 |
| Msa1017690 | AT1G63460.1 | 61.783 | 157 | 60 | 0 | 11 | 167 | 8 | 164 | 1.83e-73 | 218 |
| Msa1017690 | AT2G43350.2 | 57.055 | 163 | 70 | 0 | 8 | 170 | 44 | 206 | 4.36e-68 | 206 |
| Msa1017690 | AT2G43350.1 | 57.055 | 163 | 70 | 0 | 8 | 170 | 44 | 206 | 4.36e-68 | 206 |
| Msa1017690 | AT4G31870.2 | 46.970 | 66 | 35 | 0 | 4 | 69 | 68 | 133 | 4.95e-19 | 79.7 |
Find 58 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACAAAATGAATGTATATT+TGG | 0.181906 | 7_1:+36986916 | Msa1017690:three_prime_UTR |
| TGCTGTAAAGCTCAGTTAAC+TGG | 0.245625 | 7_1:-36984204 | None:intergenic |
| CTACCTTAACTGTGAATTCA+TGG | 0.277645 | 7_1:-36983772 | None:intergenic |
| TGCCTATGCTAAGATTGATT+TGG | 0.289422 | 7_1:-36983621 | None:intergenic |
| TTCCTTAAAGAAAAGAAATC+TGG | 0.331564 | 7_1:+36986053 | Msa1017690:CDS |
| CGCATTACCTTTCCGAAAAT+CGG | 0.338888 | 7_1:-36984510 | None:intergenic |
| AAAATCACCAAACAAAGAAA+TGG | 0.339406 | 7_1:+36983718 | Msa1017690:exon |
| GATATTACTTCCATGGAAAA+TGG | 0.340924 | 7_1:-36986167 | None:intergenic |
| GATTTCAGGACTTGAGATAT+TGG | 0.343793 | 7_1:+36984398 | Msa1017690:intron |
| GTTGTATCAAAATTCTCCTT+TGG | 0.354184 | 7_1:+36987005 | Msa1017690:three_prime_UTR |
| CTTTCCCTTTGTAAGTGCTT+AGG | 0.358344 | 7_1:-36983922 | None:intergenic |
| TGATTGCTGTGTATTACATT+TGG | 0.371835 | 7_1:+36987073 | Msa1017690:three_prime_UTR |
| TATTGAATATGTTATGTCTA+GGG | 0.379333 | 7_1:+36986963 | Msa1017690:three_prime_UTR |
| GCCTATGCTAAGATTGATTT+GGG | 0.381471 | 7_1:-36983620 | None:intergenic |
| CAATCGCTTCAAATTATTGC+GGG | 0.389764 | 7_1:+36986877 | Msa1017690:three_prime_UTR |
| TCTTTAAGGAATTTGTAGAT+AGG | 0.397898 | 7_1:-36986041 | None:intergenic |
| TACAGCAGATACAAGGATAA+AGG | 0.414694 | 7_1:+36984220 | Msa1017690:CDS |
| TAGTTAACGTTGCTTCGAAA+TGG | 0.425214 | 7_1:+36983954 | Msa1017690:CDS |
| AATCCATGAATTCACAGTTA+AGG | 0.431186 | 7_1:+36983769 | Msa1017690:CDS |
| TTATTGAATATGTTATGTCT+AGG | 0.431966 | 7_1:+36986962 | Msa1017690:three_prime_UTR |
| GAAGCACCCATTTCTTTGTT+TGG | 0.433277 | 7_1:-36983725 | None:intergenic |
| TATTTGCAGATACGTGTGAA+TGG | 0.466900 | 7_1:+36986005 | Msa1017690:intron |
| TTTGTAGATAGGTGCTGTGT+CGG | 0.467391 | 7_1:-36986030 | None:intergenic |
| TCAAGAGCCGGGGAATAGTC+AGG | 0.479762 | 7_1:+36984446 | Msa1017690:CDS |
| AAATCACCAAACAAAGAAAT+GGG | 0.486226 | 7_1:+36983719 | Msa1017690:exon |
| CTCGGCTTTGAATCTTGTAC+AGG | 0.488818 | 7_1:-36984484 | None:intergenic |
| AATGACATCAAGAAGGCATT+GGG | 0.490705 | 7_1:+36986835 | Msa1017690:CDS |
| TGCTGTGTATTACATTTGGC+TGG | 0.493065 | 7_1:+36987077 | Msa1017690:three_prime_UTR |
| AGAAATGGGTGCTTCACATT+CGG | 0.505061 | 7_1:+36983733 | Msa1017690:exon |
| TTCTAGGGTCTAGGATAAAG+TGG | 0.507102 | 7_1:+36986078 | Msa1017690:CDS |
| ATGTAATACACAGCAATCAC+AGG | 0.512859 | 7_1:-36987069 | None:intergenic |
| GAATGACATCAAGAAGGCAT+TGG | 0.512896 | 7_1:+36986834 | Msa1017690:intron |
| CTTTCCGAAAATCGGATACT+CGG | 0.513833 | 7_1:-36984502 | None:intergenic |
| CAGTTTCTGAATCAAGAGCC+GGG | 0.514222 | 7_1:+36984435 | Msa1017690:CDS |
| GGCATTGGGAGAGGCTTGAA+AGG | 0.516902 | 7_1:+36986849 | Msa1017690:exon |
| TTGTAGATAGGTGCTGTGTC+GGG | 0.532272 | 7_1:-36986029 | None:intergenic |
| TCAGTTTCTGAATCAAGAGC+CGG | 0.532928 | 7_1:+36984434 | Msa1017690:CDS |
| AGAGGGAGATATTACTTCCA+TGG | 0.535646 | 7_1:-36986174 | None:intergenic |
| ATTGAATATGTTATGTCTAG+GGG | 0.541174 | 7_1:+36986964 | Msa1017690:three_prime_UTR |
| CATCAAGAAGGCATTGGGAG+AGG | 0.546134 | 7_1:+36986840 | Msa1017690:CDS |
| AGGTGGTTGGACTATAACGC+TGG | 0.546220 | 7_1:-36986142 | None:intergenic |
| TGAACCTAAGCACTTACAAA+GGG | 0.559862 | 7_1:+36983918 | Msa1017690:CDS |
| AAATAATGAATTATATCACA+AGG | 0.577120 | 7_1:-36987028 | None:intergenic |
| TGATTCAGAAACTGATTGCA+CGG | 0.578787 | 7_1:-36984426 | None:intergenic |
| GCTGTAAAGCTCAGTTAACT+GGG | 0.578819 | 7_1:-36984203 | None:intergenic |
| ATGGAAAATGGTGAGGTGGT+TGG | 0.585195 | 7_1:-36986155 | None:intergenic |
| ACAATCGCTTCAAATTATTG+CGG | 0.599555 | 7_1:+36986876 | Msa1017690:three_prime_UTR |
| TGAGCTTTACAGCAGATACA+AGG | 0.602591 | 7_1:+36984213 | Msa1017690:CDS |
| GTGAACCTAAGCACTTACAA+AGG | 0.611486 | 7_1:+36983917 | Msa1017690:CDS |
| TTTGTAGAATGACATCAAGA+AGG | 0.616805 | 7_1:+36986828 | Msa1017690:intron |
| TCTGCCTCCTGACTATTCCC+CGG | 0.618651 | 7_1:-36984453 | None:intergenic |
| TACTTCCATGGAAAATGGTG+AGG | 0.621803 | 7_1:-36986162 | None:intergenic |
| GAATTATATCACAAGGCCAA+AGG | 0.625003 | 7_1:-36987021 | None:intergenic |
| ACCCAAATCAATCTTAGCAT+AGG | 0.640004 | 7_1:+36983619 | Msa1017690:five_prime_UTR |
| TTCCATGGAAAATGGTGAGG+TGG | 0.643848 | 7_1:-36986159 | None:intergenic |
| AGTTTCTGAATCAAGAGCCG+GGG | 0.680134 | 7_1:+36984436 | Msa1017690:CDS |
| TGTAATACACAGCAATCACA+GGG | 0.683418 | 7_1:-36987068 | None:intergenic |
| AGAGCCGGGGAATAGTCAGG+AGG | 0.703784 | 7_1:+36984449 | Msa1017690:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGATTAAATTAGTTTTTAAT+AGG | + | chr7_1:36984120-36984139 | Msa1017690:intron | 10.0% |
| !!! | GATTAAATTAGTTTTTAATA+GGG | + | chr7_1:36984121-36984140 | Msa1017690:intron | 10.0% |
| !! | ATTGATTAAAAACATAAATT+AGG | + | chr7_1:36984851-36984870 | Msa1017690:intron | 10.0% |
| !!! | AATATTTTTTTAAAGTAAAC+AGG | - | chr7_1:36986448-36986467 | None:intergenic | 10.0% |
| !! | AAAAGTTGTAAAAAAATAAA+AGG | + | chr7_1:36986653-36986672 | Msa1017690:intron | 10.0% |
| !!! | TTTTTTTGTAAAGAGTTAAA+GGG | - | chr7_1:36983817-36983836 | None:intergenic | 15.0% |
| !!! | TTTAGCTAATTTTGTTTATT+GGG | + | chr7_1:36984144-36984163 | Msa1017690:intron | 15.0% |
| !!! | TCTTTTCTTTTAATTCATTT+TGG | - | chr7_1:36984625-36984644 | None:intergenic | 15.0% |
| !! | CAAAGAAAAAATAAAACAAA+AGG | - | chr7_1:36985636-36985655 | None:intergenic | 15.0% |
| !!! | ATTTTAAGTTTTACTAACAA+GGG | + | chr7_1:36986498-36986517 | Msa1017690:intron | 15.0% |
| !! | TAATAAACATGATAGAATAT+AGG | - | chr7_1:36986695-36986714 | None:intergenic | 15.0% |
| !!! | TTTTCATAAAACAAAATTGT+TGG | + | chr7_1:36986781-36986800 | Msa1017690:intron | 15.0% |
| !! | AAACAAAATGAATGTATATT+TGG | + | chr7_1:36986916-36986935 | Msa1017690:three_prime_UTR | 15.0% |
| !! | AAATAATGAATTATATCACA+AGG | - | chr7_1:36987031-36987050 | None:intergenic | 15.0% |
| !!! | TTTCTCTTTTGCTTAATATA+GGG | - | chr7_1:36983661-36983680 | None:intergenic | 20.0% |
| !!! | TTTTCTCTTTTGCTTAATAT+AGG | - | chr7_1:36983662-36983681 | None:intergenic | 20.0% |
| !!! | GTTTTTTTGTAAAGAGTTAA+AGG | - | chr7_1:36983818-36983837 | None:intergenic | 20.0% |
| !! | AGCAAAAGTAACAAAAAAAA+GGG | - | chr7_1:36983840-36983859 | None:intergenic | 20.0% |
| !! | AAGCAAAAGTAACAAAAAAA+AGG | - | chr7_1:36983841-36983860 | None:intergenic | 20.0% |
| !! | TTTATGGTTTAATTGTTACT+GGG | + | chr7_1:36984036-36984055 | Msa1017690:intron | 20.0% |
| !!! | GTTTTGCTAGTTTTTTAATT+GGG | + | chr7_1:36984090-36984109 | Msa1017690:intron | 20.0% |
| !!! | TTTTGCTAGTTTTTTAATTG+GGG | + | chr7_1:36984091-36984110 | Msa1017690:intron | 20.0% |
| !!! | GTTTAGCTAATTTTGTTTAT+TGG | + | chr7_1:36984143-36984162 | Msa1017690:intron | 20.0% |
| !!! | GATAAAGGTATGATTTTTAA+GGG | + | chr7_1:36984235-36984254 | Msa1017690:intron | 20.0% |
| !!! | AAAAGAGTACAATGATTTTT+TGG | + | chr7_1:36984639-36984658 | Msa1017690:intron | 20.0% |
| !! | GTTGTAATTATGTTGTTAAT+CGG | + | chr7_1:36984666-36984685 | Msa1017690:intron | 20.0% |
| !! | ACATAACAAGTTTAATAGAA+GGG | - | chr7_1:36984773-36984792 | None:intergenic | 20.0% |
| !! | TTGTCATATTATGATTAACT+AGG | - | chr7_1:36985070-36985089 | None:intergenic | 20.0% |
| !! | TTAATCATAATATGACAACT+AGG | + | chr7_1:36985072-36985091 | Msa1017690:intron | 20.0% |
| !! | AATAACGAATCAAATATATC+TGG | - | chr7_1:36985986-36986005 | None:intergenic | 20.0% |
| !! | ATGATAATCATATAAACGTT+GGG | - | chr7_1:36986275-36986294 | None:intergenic | 20.0% |
| !!! | TTTAGCCTTAATAAATGATA+GGG | - | chr7_1:36986326-36986345 | None:intergenic | 20.0% |
| !! | TAAAGATGTCAATATATCAA+TGG | + | chr7_1:36986342-36986361 | Msa1017690:intron | 20.0% |
| !!! | CATTTTAAGTTTTACTAACA+AGG | + | chr7_1:36986497-36986516 | Msa1017690:intron | 20.0% |
| !! | TTGTGATAGAAAAAAATAGA+AGG | + | chr7_1:36986547-36986566 | Msa1017690:intron | 20.0% |
| !! | AAAAAATAGAAGGAAAAACT+AGG | + | chr7_1:36986557-36986576 | Msa1017690:intron | 20.0% |
| !! | TGAAAATAGAAAACAAGAAA+AGG | + | chr7_1:36986722-36986741 | Msa1017690:intron | 20.0% |
| !! | GAAAATAGAAAACAAGAAAA+GGG | + | chr7_1:36986723-36986742 | Msa1017690:intron | 20.0% |
| !! | TTATTGAATATGTTATGTCT+AGG | + | chr7_1:36986962-36986981 | Msa1017690:three_prime_UTR | 20.0% |
| !! | TATTGAATATGTTATGTCTA+GGG | + | chr7_1:36986963-36986982 | Msa1017690:three_prime_UTR | 20.0% |
| !!! | TTTCTTTGTTTGGTGATTTT+TGG | - | chr7_1:36983718-36983737 | None:intergenic | 25.0% |
| ! | AAAATCACCAAACAAAGAAA+TGG | + | chr7_1:36983718-36983737 | Msa1017690:exon | 25.0% |
| ! | AAATCACCAAACAAAGAAAT+GGG | + | chr7_1:36983719-36983738 | Msa1017690:exon | 25.0% |
| ! | TCAATCTTTCTTTCTCTTTA+TGG | + | chr7_1:36984020-36984039 | Msa1017690:intron | 25.0% |
| ! | CTTTATGGTTTAATTGTTAC+TGG | + | chr7_1:36984035-36984054 | Msa1017690:intron | 25.0% |
| ! | TTATGGTTTAATTGTTACTG+GGG | + | chr7_1:36984037-36984056 | Msa1017690:intron | 25.0% |
| !!! | GGTTTTGCTAGTTTTTTAAT+TGG | + | chr7_1:36984089-36984108 | Msa1017690:intron | 25.0% |
| !!! | TATTGGGTTTTTAATTACAG+TGG | + | chr7_1:36984160-36984179 | Msa1017690:intron | 25.0% |
| !!! | GGATAAAGGTATGATTTTTA+AGG | + | chr7_1:36984234-36984253 | Msa1017690:intron | 25.0% |
| !!! | TCGGTTAAGTAATTTTAAGT+TGG | + | chr7_1:36984685-36984704 | Msa1017690:intron | 25.0% |
| !!! | AATTTTAAGTTGGTCTACAA+CGG | + | chr7_1:36984695-36984714 | Msa1017690:intron | 25.0% |
| ! | GACATAACAAGTTTAATAGA+AGG | - | chr7_1:36984774-36984793 | None:intergenic | 25.0% |
| !!! | ATTCAGGTCAATTTTTGAAA+GGG | + | chr7_1:36984978-36984997 | Msa1017690:intron | 25.0% |
| !!! | TTAACTAGGAGATTTGATTT+TGG | - | chr7_1:36985056-36985075 | None:intergenic | 25.0% |
| !!! | ACCTAATTTTAATTCGATGA+GGG | - | chr7_1:36985407-36985426 | None:intergenic | 25.0% |
| !!! | AACCTAATTTTAATTCGATG+AGG | - | chr7_1:36985408-36985427 | None:intergenic | 25.0% |
| ! | CTGTAAATTATAGAATCCAT+TGG | + | chr7_1:36985451-36985470 | Msa1017690:intron | 25.0% |
| ! | ATAAACATGTGAGTAAAGTA+AGG | - | chr7_1:36985533-36985552 | None:intergenic | 25.0% |
| ! | AGTTCAATTTCCAATAGAAT+TGG | - | chr7_1:36985599-36985618 | None:intergenic | 25.0% |
| ! | GAAATTGAACTTGAAAAAAC+TGG | + | chr7_1:36985608-36985627 | Msa1017690:intron | 25.0% |
| ! | AAAGATGAATAAACATTCAG+AGG | - | chr7_1:36985879-36985898 | None:intergenic | 25.0% |
| ! | CATCTTTACAAATGATGATT+AGG | + | chr7_1:36985892-36985911 | Msa1017690:intron | 25.0% |
| ! | TATATCTGGTTAACAAACAA+TGG | - | chr7_1:36985972-36985991 | None:intergenic | 25.0% |
| !! | TCTTTAAGGAATTTGTAGAT+AGG | - | chr7_1:36986044-36986063 | None:intergenic | 25.0% |
| ! | TTCCTTAAAGAAAAGAAATC+TGG | + | chr7_1:36986053-36986072 | Msa1017690:CDS | 25.0% |
| !! | AACCAGATTTCTTTTCTTTA+AGG | - | chr7_1:36986058-36986077 | None:intergenic | 25.0% |
| !!! | AAAAGAAATCTGGTTTTCTA+GGG | + | chr7_1:36986063-36986082 | Msa1017690:CDS | 25.0% |
| ! | CTGATATGTCAAAATTAGAA+TGG | - | chr7_1:36986232-36986251 | None:intergenic | 25.0% |
| ! | TGATAATCATATAAACGTTG+GGG | - | chr7_1:36986274-36986293 | None:intergenic | 25.0% |
| ! | GATGATAATCATATAAACGT+TGG | - | chr7_1:36986276-36986295 | None:intergenic | 25.0% |
| !!! | CTTTAGCCTTAATAAATGAT+AGG | - | chr7_1:36986327-36986346 | None:intergenic | 25.0% |
| !! | GAAAGCAGTTTAAGAAATTT+TGG | - | chr7_1:36986633-36986652 | None:intergenic | 25.0% |
| ! | ATTGAATATGTTATGTCTAG+GGG | + | chr7_1:36986964-36986983 | Msa1017690:three_prime_UTR | 25.0% |
| !!! | ATTTTTGGTTGTTGAAGATG+TGG | - | chr7_1:36983703-36983722 | None:intergenic | 30.0% |
| AATCCATGAATTCACAGTTA+AGG | + | chr7_1:36983769-36983788 | Msa1017690:CDS | 30.0% | |
| TAAAGGGTTTGAGAAAAAGT+AGG | - | chr7_1:36983801-36983820 | None:intergenic | 30.0% | |
| !!! | AAAAACCCTTTTTTTCTTGC+AGG | + | chr7_1:36983877-36983896 | Msa1017690:intron | 30.0% |
| CAGTCTAAGTAACTTCAAAA+TGG | - | chr7_1:36984325-36984344 | None:intergenic | 30.0% | |
| ! | TTTGAAGTTACTTAGACTGA+AGG | + | chr7_1:36984326-36984345 | Msa1017690:intron | 30.0% |
| TTGAAGTTACTTAGACTGAA+GGG | + | chr7_1:36984327-36984346 | Msa1017690:intron | 30.0% | |
| !! | TCAGTTGAGAATGTTTTTGT+TGG | + | chr7_1:36984373-36984392 | Msa1017690:intron | 30.0% |
| !! | TGTTTTTGTTGGTTGATTTC+AGG | + | chr7_1:36984384-36984403 | Msa1017690:intron | 30.0% |
| GGTAAATCCTATATGGTATT+CGG | - | chr7_1:36984802-36984821 | None:intergenic | 30.0% | |
| !! | CAGTTTTGGTAAATCCTATA+TGG | - | chr7_1:36984809-36984828 | None:intergenic | 30.0% |
| ! | TTATACATGGACAACAGTTT+TGG | - | chr7_1:36984823-36984842 | None:intergenic | 30.0% |
| AACTGTTGTCCATGTATAAT+AGG | + | chr7_1:36984824-36984843 | Msa1017690:intron | 30.0% | |
| TCAATACGACCTATTATACA+TGG | - | chr7_1:36984836-36984855 | None:intergenic | 30.0% | |
| !!! | CTTTTTTCAATGACTTGACT+AGG | + | chr7_1:36984915-36984934 | Msa1017690:intron | 30.0% |
| ! | GATTCAGGTCAATTTTTGAA+AGG | + | chr7_1:36984977-36984996 | Msa1017690:intron | 30.0% |
| ! | GCTAGCATTTTTCATCTTTT+TGG | - | chr7_1:36985115-36985134 | None:intergenic | 30.0% |
| TTATTGAGTGAAATCTCATG+TGG | + | chr7_1:36985169-36985188 | Msa1017690:intron | 30.0% | |
| !! | CTGCTGACATTTTTCTAAAA+AGG | + | chr7_1:36985260-36985279 | Msa1017690:intron | 30.0% |
| CGAAGAGATACAATAATTTC+TGG | - | chr7_1:36985331-36985350 | None:intergenic | 30.0% | |
| !!! | CCTAATTTTAATTCGATGAG+GGG | - | chr7_1:36985406-36985425 | None:intergenic | 30.0% |
| TACATTGCTTCATAAGTACA+TGG | - | chr7_1:36985489-36985508 | None:intergenic | 30.0% | |
| AATTTCCAATAGAATTGGAC+AGG | - | chr7_1:36985594-36985613 | None:intergenic | 30.0% | |
| !!! | GAAAAGAAATCTGGTTTTCT+AGG | + | chr7_1:36986062-36986081 | Msa1017690:CDS | 30.0% |
| GATATTACTTCCATGGAAAA+TGG | - | chr7_1:36986170-36986189 | None:intergenic | 30.0% | |
| ! | ATCAGCCAGCTTTAATAATA+TGG | + | chr7_1:36986247-36986266 | Msa1017690:intron | 30.0% |
| ! | TCAGCCAGCTTTAATAATAT+GGG | + | chr7_1:36986248-36986267 | Msa1017690:intron | 30.0% |
| TCTCAACCTAATAAGATGTA+AGG | + | chr7_1:36986294-36986313 | Msa1017690:intron | 30.0% | |
| ! | ATAATCTCACATGGTTTTCT+TGG | + | chr7_1:36986372-36986391 | Msa1017690:intron | 30.0% |
| TTCTTGATGTCATTCTACAA+AGG | - | chr7_1:36986829-36986848 | None:intergenic | 30.0% | |
| TTTGTAGAATGACATCAAGA+AGG | + | chr7_1:36986828-36986847 | Msa1017690:intron | 30.0% | |
| ACAATCGCTTCAAATTATTG+CGG | + | chr7_1:36986876-36986895 | Msa1017690:three_prime_UTR | 30.0% | |
| GTTGTATCAAAATTCTCCTT+TGG | + | chr7_1:36987005-36987024 | Msa1017690:three_prime_UTR | 30.0% | |
| TGATTGCTGTGTATTACATT+TGG | + | chr7_1:36987073-36987092 | Msa1017690:three_prime_UTR | 30.0% | |
| ACCCAAATCAATCTTAGCAT+AGG | + | chr7_1:36983619-36983638 | Msa1017690:five_prime_UTR | 35.0% | |
| ! | GCCTATGCTAAGATTGATTT+GGG | - | chr7_1:36983623-36983642 | None:intergenic | 35.0% |
| TGCCTATGCTAAGATTGATT+TGG | - | chr7_1:36983624-36983643 | None:intergenic | 35.0% | |
| ! | GTTGAAGATGTGGTGATTTT+TGG | - | chr7_1:36983693-36983712 | None:intergenic | 35.0% |
| CTACCTTAACTGTGAATTCA+TGG | - | chr7_1:36983775-36983794 | None:intergenic | 35.0% | |
| TGCATCCTGCAAGAAAAAAA+GGG | - | chr7_1:36983885-36983904 | None:intergenic | 35.0% | |
| TTGCATCCTGCAAGAAAAAA+AGG | - | chr7_1:36983886-36983905 | None:intergenic | 35.0% | |
| !!! | TTTTTTCTTGCAGGATGCAA+AGG | + | chr7_1:36983886-36983905 | Msa1017690:intron | 35.0% |
| ! | TTTTTCTTGCAGGATGCAAA+GGG | + | chr7_1:36983887-36983906 | Msa1017690:intron | 35.0% |
| TGAACCTAAGCACTTACAAA+GGG | + | chr7_1:36983918-36983937 | Msa1017690:CDS | 35.0% | |
| TAGTTAACGTTGCTTCGAAA+TGG | + | chr7_1:36983954-36983973 | Msa1017690:CDS | 35.0% | |
| TACAGCAGATACAAGGATAA+AGG | + | chr7_1:36984220-36984239 | Msa1017690:CDS | 35.0% | |
| !!! | GAAGTGCTGATTTTTGCATT+TGG | + | chr7_1:36984261-36984280 | Msa1017690:intron | 35.0% |
| GATTTCAGGACTTGAGATAT+TGG | + | chr7_1:36984398-36984417 | Msa1017690:intron | 35.0% | |
| TGATTCAGAAACTGATTGCA+CGG | - | chr7_1:36984429-36984448 | None:intergenic | 35.0% | |
| CAATAAGCTCAAAAACATCC+AGG | - | chr7_1:36984586-36984605 | None:intergenic | 35.0% | |
| AATCCACTCAAATGAGATTC+AGG | + | chr7_1:36984962-36984981 | Msa1017690:intron | 35.0% | |
| !! | GATAGTGGACATCACTAATA+GGG | - | chr7_1:36985196-36985215 | None:intergenic | 35.0% |
| !! | AGATAGTGGACATCACTAAT+AGG | - | chr7_1:36985197-36985216 | None:intergenic | 35.0% |
| GAAATCCAGCTAATAGATAG+TGG | - | chr7_1:36985211-36985230 | None:intergenic | 35.0% | |
| TCTTTGATACTCTCTTCGTT+AGG | - | chr7_1:36985235-36985254 | None:intergenic | 35.0% | |
| ! | AGACCCTAGTTATTGTTTTC+CGG | + | chr7_1:36985357-36985376 | Msa1017690:intron | 35.0% |
| TCACCGGAAAACAATAACTA+GGG | - | chr7_1:36985363-36985382 | None:intergenic | 35.0% | |
| CCCCTCATCGAATTAAAATT+AGG | + | chr7_1:36985403-36985422 | Msa1017690:intron | 35.0% | |
| ATTATAGAATCCATTGGCGA+CGG | + | chr7_1:36985457-36985476 | Msa1017690:intron | 35.0% | |
| ATAGAATTGGACAGGTCAAT+AGG | - | chr7_1:36985586-36985605 | None:intergenic | 35.0% | |
| ATTGACCTGTCCAATTCTAT+TGG | + | chr7_1:36985586-36985605 | Msa1017690:intron | 35.0% | |
| TGAGCAACTATTCAATGTGT+TGG | + | chr7_1:36985790-36985809 | Msa1017690:intron | 35.0% | |
| ! | CTATTCAATGTGTTGGTAGA+CGG | + | chr7_1:36985797-36985816 | Msa1017690:intron | 35.0% |
| TTGGTAGACGGAAATATACA+GGG | + | chr7_1:36985809-36985828 | Msa1017690:intron | 35.0% | |
| ATATACAGGGAAATTTGTCG+TGG | + | chr7_1:36985822-36985841 | Msa1017690:intron | 35.0% | |
| ATGAATAAACATTCAGAGGC+AGG | - | chr7_1:36985875-36985894 | None:intergenic | 35.0% | |
| AAAGAGATGCATGACTATCT+AGG | - | chr7_1:36985932-36985951 | None:intergenic | 35.0% | |
| TATTTGCAGATACGTGTGAA+TGG | + | chr7_1:36986005-36986024 | Msa1017690:intron | 35.0% | |
| ! | GTGGAATTTCACCAAGTTTT+TGG | + | chr7_1:36986097-36986116 | Msa1017690:CDS | 35.0% |
| TTCCTTGTCAACCAAAAACT+TGG | - | chr7_1:36986111-36986130 | None:intergenic | 35.0% | |
| !!! | AAGTTTTTGGTTGACAAGGA+AGG | + | chr7_1:36986110-36986129 | Msa1017690:CDS | 35.0% |
| !!! | AGTTTTTGGTTGACAAGGAA+GGG | + | chr7_1:36986111-36986130 | Msa1017690:CDS | 35.0% |
| GAATGAACATAACAGAGACA+TGG | - | chr7_1:36986210-36986229 | None:intergenic | 35.0% | |
| ACCTAATAAGATGTAAGGAG+TGG | + | chr7_1:36986299-36986318 | Msa1017690:intron | 35.0% | |
| TCCACTCCTTACATCTTATT+AGG | - | chr7_1:36986303-36986322 | None:intergenic | 35.0% | |
| GTGGACCCTATCATTTATTA+AGG | + | chr7_1:36986318-36986337 | Msa1017690:intron | 35.0% | |
| GAAAACAAGAAAAGGGAACA+TGG | + | chr7_1:36986730-36986749 | Msa1017690:intron | 35.0% | |
| ATGGCAAATGTGAAACATGT+TGG | + | chr7_1:36986749-36986768 | Msa1017690:intron | 35.0% | |
| !! | AATGACATCAAGAAGGCATT+GGG | + | chr7_1:36986835-36986854 | Msa1017690:CDS | 35.0% |
| CAATCGCTTCAAATTATTGC+GGG | + | chr7_1:36986877-36986896 | Msa1017690:three_prime_UTR | 35.0% | |
| !!! | TTATGTCTAGGGGTTTTGTT+TGG | + | chr7_1:36986974-36986993 | Msa1017690:three_prime_UTR | 35.0% |
| GAATTATATCACAAGGCCAA+AGG | - | chr7_1:36987024-36987043 | None:intergenic | 35.0% | |
| TGTAATACACAGCAATCACA+GGG | - | chr7_1:36987071-36987090 | None:intergenic | 35.0% | |
| ATGTAATACACAGCAATCAC+AGG | - | chr7_1:36987072-36987091 | None:intergenic | 35.0% | |
| ! | GAAGCACCCATTTCTTTGTT+TGG | - | chr7_1:36983728-36983747 | None:intergenic | 40.0% |
| AGAAATGGGTGCTTCACATT+CGG | + | chr7_1:36983733-36983752 | Msa1017690:exon | 40.0% | |
| GTGAACCTAAGCACTTACAA+AGG | + | chr7_1:36983917-36983936 | Msa1017690:CDS | 40.0% | |
| CTTTCCCTTTGTAAGTGCTT+AGG | - | chr7_1:36983925-36983944 | None:intergenic | 40.0% | |
| GCTGTAAAGCTCAGTTAACT+GGG | - | chr7_1:36984206-36984225 | None:intergenic | 40.0% | |
| TGCTGTAAAGCTCAGTTAAC+TGG | - | chr7_1:36984207-36984226 | None:intergenic | 40.0% | |
| TGAGCTTTACAGCAGATACA+AGG | + | chr7_1:36984213-36984232 | Msa1017690:CDS | 40.0% | |
| TCAGTTTCTGAATCAAGAGC+CGG | + | chr7_1:36984434-36984453 | Msa1017690:CDS | 40.0% | |
| ! | AAAGCCGAGTATCCGATTTT+CGG | + | chr7_1:36984498-36984517 | Msa1017690:CDS | 40.0% |
| CTTTCCGAAAATCGGATACT+CGG | - | chr7_1:36984505-36984524 | None:intergenic | 40.0% | |
| CGCATTACCTTTCCGAAAAT+CGG | - | chr7_1:36984513-36984532 | None:intergenic | 40.0% | |
| ! | ACCTGATAGTTTTTCTGTCC+TGG | + | chr7_1:36984565-36984584 | Msa1017690:intron | 40.0% |
| TCCAGGACAGAAAAACTATC+AGG | - | chr7_1:36984569-36984588 | None:intergenic | 40.0% | |
| !! | TTAAGTTGGTCTACAACGGT+CGG | + | chr7_1:36984699-36984718 | Msa1017690:intron | 40.0% |
| AACGGTCGGTAATCTTTAAG+CGG | + | chr7_1:36984713-36984732 | Msa1017690:intron | 40.0% | |
| GGAAGATGTCATGTTGCATA+AGG | + | chr7_1:36984735-36984754 | Msa1017690:intron | 40.0% | |
| TCATCGACCGAATACCATAT+AGG | + | chr7_1:36984792-36984811 | Msa1017690:intron | 40.0% | |
| TCAATGACTTGACTAGGTCT+AGG | + | chr7_1:36984921-36984940 | Msa1017690:intron | 40.0% | |
| TGACCTGAATCTCATTTGAG+TGG | - | chr7_1:36984968-36984987 | None:intergenic | 40.0% | |
| GATGTCCACTATCTATTAGC+TGG | + | chr7_1:36985203-36985222 | Msa1017690:intron | 40.0% | |
| TGGAAAAGTTGTGTGTGACA+AGG | - | chr7_1:36985311-36985330 | None:intergenic | 40.0% | |
| GTCACCGGAAAACAATAACT+AGG | - | chr7_1:36985364-36985383 | None:intergenic | 40.0% | |
| CTTACACAATAACGAGTCAC+CGG | - | chr7_1:36985379-36985398 | None:intergenic | 40.0% | |
| TACAAGCAAGTCAACTTGCA+GGG | - | chr7_1:36985560-36985579 | None:intergenic | 40.0% | |
| ATACAAGCAAGTCAACTTGC+AGG | - | chr7_1:36985561-36985580 | None:intergenic | 40.0% | |
| ! | ATTTCACTGTGTGCCATTAC+TGG | + | chr7_1:36985685-36985704 | Msa1017690:intron | 40.0% |
| GTTGTAGACCAATCCAGTAA+TGG | - | chr7_1:36985701-36985720 | None:intergenic | 40.0% | |
| ! | GTTGGTAGACGGAAATATAC+AGG | + | chr7_1:36985808-36985827 | Msa1017690:intron | 40.0% |
| ! | TTTGTAGATAGGTGCTGTGT+CGG | - | chr7_1:36986033-36986052 | None:intergenic | 40.0% |
| !!! | AATCTGGTTTTCTAGGGTCT+AGG | + | chr7_1:36986069-36986088 | Msa1017690:CDS | 40.0% |
| !! | TTCTAGGGTCTAGGATAAAG+TGG | + | chr7_1:36986078-36986097 | Msa1017690:CDS | 40.0% |
| !!! | CACCAAGTTTTTGGTTGACA+AGG | + | chr7_1:36986106-36986125 | Msa1017690:CDS | 40.0% |
| TACTTCCATGGAAAATGGTG+AGG | - | chr7_1:36986165-36986184 | None:intergenic | 40.0% | |
| AGAGGGAGATATTACTTCCA+TGG | - | chr7_1:36986177-36986196 | None:intergenic | 40.0% | |
| GACATGGAGAGAAATAGAGA+GGG | - | chr7_1:36986194-36986213 | None:intergenic | 40.0% | |
| AGACATGGAGAGAAATAGAG+AGG | - | chr7_1:36986195-36986214 | None:intergenic | 40.0% | |
| ! | GAATGACATCAAGAAGGCAT+TGG | + | chr7_1:36986834-36986853 | Msa1017690:intron | 40.0% |
| TGCTGTGTATTACATTTGGC+TGG | + | chr7_1:36987077-36987096 | Msa1017690:three_prime_UTR | 40.0% | |
| CAGTTTCTGAATCAAGAGCC+GGG | + | chr7_1:36984435-36984454 | Msa1017690:CDS | 45.0% | |
| AGTTTCTGAATCAAGAGCCG+GGG | + | chr7_1:36984436-36984455 | Msa1017690:CDS | 45.0% | |
| !! | CTCGGCTTTGAATCTTGTAC+AGG | - | chr7_1:36984487-36984506 | None:intergenic | 45.0% |
| ! | CGAGTATCCGATTTTCGGAA+AGG | + | chr7_1:36984503-36984522 | Msa1017690:CDS | 45.0% |
| ACGGTCGGTAATCTTTAAGC+GGG | + | chr7_1:36984714-36984733 | Msa1017690:intron | 45.0% | |
| AAGGCGTGAAACACAGATGA+AGG | - | chr7_1:36985514-36985533 | None:intergenic | 45.0% | |
| ! | ACTGTGTGCCATTACTGGAT+TGG | + | chr7_1:36985690-36985709 | Msa1017690:intron | 45.0% |
| !! | ACTGGATTGGTCTACAACTC+TGG | + | chr7_1:36985703-36985722 | Msa1017690:intron | 45.0% |
| !! | CTGGATTGGTCTACAACTCT+GGG | + | chr7_1:36985704-36985723 | Msa1017690:intron | 45.0% |
| GTTGCTCATTTGACAAGACG+CGG | - | chr7_1:36985778-36985797 | None:intergenic | 45.0% | |
| ! | AATTTGTCGTGGTGTCAGCT+AGG | + | chr7_1:36985833-36985852 | Msa1017690:intron | 45.0% |
| ! | TTGTAGATAGGTGCTGTGTC+GGG | - | chr7_1:36986032-36986051 | None:intergenic | 45.0% |
| ATGGAAAATGGTGAGGTGGT+TGG | - | chr7_1:36986158-36986177 | None:intergenic | 45.0% | |
| ! | AACCACCTCACCATTTTCCA+TGG | + | chr7_1:36986157-36986176 | Msa1017690:CDS | 45.0% |
| TTCCATGGAAAATGGTGAGG+TGG | - | chr7_1:36986162-36986181 | None:intergenic | 45.0% | |
| GGGGCCCATATTATTAAAGC+TGG | - | chr7_1:36986255-36986274 | None:intergenic | 45.0% | |
| GGAGTGAGCATAATCTCACA+TGG | + | chr7_1:36986363-36986382 | Msa1017690:intron | 45.0% | |
| !! | AATTTAATTAATTGTTTAAT+AGG | + | chr7_1:36984067-36984086 | Msa1017690:intron | 5.0% |
| !! | ATTTAATTAATTGTTTAATA+GGG | + | chr7_1:36984068-36984087 | Msa1017690:intron | 5.0% |
| AGAATCCATTGGCGACGGAT+TGG | + | chr7_1:36985462-36985481 | Msa1017690:intron | 50.0% | |
| ! | GAATCCATTGGCGACGGATT+GGG | + | chr7_1:36985463-36985482 | Msa1017690:intron | 50.0% |
| AGCAAGTCAACTTGCAGGGT+TGG | - | chr7_1:36985556-36985575 | None:intergenic | 50.0% | |
| AGGTGGTTGGACTATAACGC+TGG | - | chr7_1:36986145-36986164 | None:intergenic | 50.0% | |
| !! | CATCAAGAAGGCATTGGGAG+AGG | + | chr7_1:36986840-36986859 | Msa1017690:CDS | 50.0% |
| TCAAGAGCCGGGGAATAGTC+AGG | + | chr7_1:36984446-36984465 | Msa1017690:CDS | 55.0% | |
| TCTGCCTCCTGACTATTCCC+CGG | - | chr7_1:36984456-36984475 | None:intergenic | 55.0% | |
| ! | GGCATTGGGAGAGGCTTGAA+AGG | + | chr7_1:36986849-36986868 | Msa1017690:exon | 55.0% |
| AGAGCCGGGGAATAGTCAGG+AGG | + | chr7_1:36984449-36984468 | Msa1017690:CDS | 60.0% | |
| ATGGCCCAATCCGTCGCCAA+TGG | - | chr7_1:36985470-36985489 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 36983578 | 36987124 | 36983578 | ID=Msa1017690;Name=Msa1017690 |
| chr7_1 | mRNA | 36983578 | 36987124 | 36983578 | ID=Msa1017690-mRNA-1;Parent=Msa1017690;Name=Msa1017690-mRNA-1;_AED=0.08;_eAED=0.08;_QI=159|1|1|1|1|1|6|257|170 |
| chr7_1 | exon | 36983578 | 36983790 | 36983578 | ID=Msa1017690-mRNA-1:exon:7037;Parent=Msa1017690-mRNA-1 |
| chr7_1 | exon | 36983899 | 36983975 | 36983899 | ID=Msa1017690-mRNA-1:exon:7038;Parent=Msa1017690-mRNA-1 |
| chr7_1 | exon | 36984180 | 36984241 | 36984180 | ID=Msa1017690-mRNA-1:exon:7039;Parent=Msa1017690-mRNA-1 |
| chr7_1 | exon | 36984406 | 36984524 | 36984406 | ID=Msa1017690-mRNA-1:exon:7040;Parent=Msa1017690-mRNA-1 |
| chr7_1 | exon | 36986014 | 36986181 | 36986014 | ID=Msa1017690-mRNA-1:exon:7041;Parent=Msa1017690-mRNA-1 |
| chr7_1 | exon | 36986835 | 36987124 | 36986835 | ID=Msa1017690-mRNA-1:exon:7042;Parent=Msa1017690-mRNA-1 |
| chr7_1 | five_prime_UTR | 36983578 | 36983736 | 36983578 | ID=Msa1017690-mRNA-1:five_prime_utr;Parent=Msa1017690-mRNA-1 |
| chr7_1 | CDS | 36983737 | 36983790 | 36983737 | ID=Msa1017690-mRNA-1:cds;Parent=Msa1017690-mRNA-1 |
| chr7_1 | CDS | 36983899 | 36983975 | 36983899 | ID=Msa1017690-mRNA-1:cds;Parent=Msa1017690-mRNA-1 |
| chr7_1 | CDS | 36984180 | 36984241 | 36984180 | ID=Msa1017690-mRNA-1:cds;Parent=Msa1017690-mRNA-1 |
| chr7_1 | CDS | 36984406 | 36984524 | 36984406 | ID=Msa1017690-mRNA-1:cds;Parent=Msa1017690-mRNA-1 |
| chr7_1 | CDS | 36986014 | 36986181 | 36986014 | ID=Msa1017690-mRNA-1:cds;Parent=Msa1017690-mRNA-1 |
| chr7_1 | CDS | 36986835 | 36986867 | 36986835 | ID=Msa1017690-mRNA-1:cds;Parent=Msa1017690-mRNA-1 |
| chr7_1 | three_prime_UTR | 36986868 | 36987124 | 36986868 | ID=Msa1017690-mRNA-1:three_prime_utr;Parent=Msa1017690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
