Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1117130 | AFK37618.1 | 89.326 | 178 | 11 | 1 | 1 | 178 | 1 | 170 | 6.02e-112 | 326 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1117130 | sp|Q8L910|GPX4_ARATH | 64.045 | 178 | 56 | 1 | 1 | 178 | 1 | 170 | 1.32e-80 | 239 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1117130 | I3SBH6 | 89.326 | 178 | 11 | 1 | 1 | 178 | 1 | 170 | 2.88e-112 | 326 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0475240 | Msa1117130 | 0.804624 | 1.975374e-49 | -8.615850e-47 |
| Msa1017690 | Msa1117130 | 0.924061 | 1.164200e-89 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1117130 | MtrunA17_Chr7g0259611 | 89.326 | 178 | 11 | 1 | 1 | 178 | 1 | 170 | 5.54e-116 | 326 |
| Msa1117130 | MtrunA17_Chr1g0185791 | 67.045 | 176 | 49 | 2 | 1 | 175 | 1 | 168 | 4.81e-86 | 250 |
| Msa1117130 | MtrunA17_Chr8g0386721 | 61.818 | 165 | 55 | 1 | 11 | 175 | 9 | 165 | 1.47e-72 | 216 |
| Msa1117130 | MtrunA17_Chr1g0150061 | 56.647 | 173 | 67 | 1 | 4 | 176 | 71 | 235 | 1.92e-69 | 210 |
| Msa1117130 | MtrunA17_Chr8g0391921 | 54.545 | 176 | 69 | 2 | 3 | 175 | 55 | 222 | 1.22e-65 | 200 |
| Msa1117130 | MtrunA17_Chr8g0386731 | 54.913 | 173 | 70 | 1 | 4 | 176 | 6 | 170 | 4.85e-64 | 194 |
| Msa1117130 | MtrunA17_Chr5g0397561 | 52.663 | 169 | 71 | 2 | 9 | 176 | 9 | 169 | 6.82e-59 | 181 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1117130 | AT2G48150.1 | 64.045 | 178 | 56 | 1 | 1 | 178 | 1 | 170 | 1.34e-81 | 239 |
| Msa1117130 | AT3G63080.1 | 64.458 | 166 | 51 | 1 | 12 | 177 | 14 | 171 | 3.41e-78 | 231 |
| Msa1117130 | AT4G11600.1 | 62.048 | 166 | 55 | 1 | 11 | 176 | 72 | 229 | 9.93e-73 | 219 |
| Msa1117130 | AT4G31870.1 | 57.803 | 173 | 65 | 1 | 4 | 176 | 68 | 232 | 4.06e-71 | 215 |
| Msa1117130 | AT2G25080.1 | 56.647 | 173 | 67 | 1 | 4 | 176 | 71 | 235 | 3.63e-70 | 213 |
| Msa1117130 | AT2G31570.1 | 59.064 | 171 | 62 | 1 | 8 | 178 | 5 | 167 | 1.12e-69 | 209 |
| Msa1117130 | AT2G48150.2 | 63.816 | 152 | 47 | 1 | 27 | 178 | 1 | 144 | 5.90e-67 | 201 |
| Msa1117130 | AT1G63460.1 | 56.364 | 165 | 64 | 1 | 11 | 175 | 8 | 164 | 8.84e-66 | 199 |
| Msa1117130 | AT2G43350.2 | 52.047 | 171 | 74 | 1 | 8 | 178 | 44 | 206 | 8.10e-61 | 188 |
| Msa1117130 | AT2G43350.1 | 52.047 | 171 | 74 | 1 | 8 | 178 | 44 | 206 | 8.10e-61 | 188 |
| Msa1117130 | AT4G31870.2 | 37.838 | 74 | 38 | 1 | 4 | 77 | 68 | 133 | 1.76e-12 | 62.8 |
Find 52 sgRNAs with CRISPR-Local
Find 227 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACAAAATGAATGTATATT+TGG | 0.181906 | 7_3:-65350828 | Msa1117130:three_prime_UTR |
| TGCTGTAAAGCTCAGTTAAC+TGG | 0.245625 | 7_3:+65353536 | None:intergenic |
| TGTCTATGCTAAGATTGATT+TGG | 0.275023 | 7_3:+65354133 | None:intergenic |
| CTACCTTAACTGTGAATTCA+TGG | 0.277645 | 7_3:+65353981 | None:intergenic |
| TTCCTTAAAGAAAAGAAATC+TGG | 0.331564 | 7_3:-65351690 | Msa1117130:CDS |
| CGCATTACCTTTCCGAAAAT+CGG | 0.338888 | 7_3:+65353230 | None:intergenic |
| GATATTACTTCCATGGAAAA+TGG | 0.340924 | 7_3:+65351576 | None:intergenic |
| GATTTCAGGACTTGAGATAT+TGG | 0.343793 | 7_3:-65353342 | Msa1117130:intron |
| GTTGTATCAAAATTCTCTTT+TGG | 0.346573 | 7_3:-65350739 | Msa1117130:three_prime_UTR |
| CTTTCCCTTTGTAAGTGCTT+AGG | 0.358344 | 7_3:+65353827 | None:intergenic |
| GTCTATGCTAAGATTGATTT+GGG | 0.364279 | 7_3:+65354134 | None:intergenic |
| TGATTGCTGTGTATTACATT+TGG | 0.371835 | 7_3:-65350671 | Msa1117130:three_prime_UTR |
| TATTGAATATGTTATGTCTA+GGG | 0.379333 | 7_3:-65350781 | Msa1117130:three_prime_UTR |
| TCTTTAAGGAATTTGTAGAT+AGG | 0.397898 | 7_3:+65351702 | None:intergenic |
| TACAGCAGATACAAGGATAA+AGG | 0.414694 | 7_3:-65353520 | Msa1117130:intron |
| AATCCATGAATTCACAGTTA+AGG | 0.431186 | 7_3:-65353984 | Msa1117130:intron |
| TTATTGAATATGTTATGTCT+AGG | 0.431966 | 7_3:-65350782 | Msa1117130:three_prime_UTR |
| TATTTGCAGATACGTGTGAA+TGG | 0.466900 | 7_3:-65351738 | Msa1117130:intron |
| TTTGTAGATAGGTGCTGTGT+CGG | 0.467391 | 7_3:+65351713 | None:intergenic |
| TCAAGAGCCGGGGAATAGTC+AGG | 0.479762 | 7_3:-65353294 | Msa1117130:CDS |
| GAAGCACCCATATCTTTGTT+TGG | 0.481149 | 7_3:+65354028 | None:intergenic |
| CTCGGCTTTGAATCTTGTAC+AGG | 0.488818 | 7_3:+65353256 | None:intergenic |
| AATGACATCAAGAAGGCATT+GGG | 0.490705 | 7_3:-65350908 | Msa1117130:CDS |
| TGCTGTGTATTACATTTGGC+TGG | 0.493065 | 7_3:-65350667 | Msa1117130:three_prime_UTR |
| AAAACACCAAACAAAGATAT+GGG | 0.497787 | 7_3:-65354034 | Msa1117130:exon |
| TTCTAGGGTCTAGGATAAAG+TGG | 0.507102 | 7_3:-65351665 | Msa1117130:CDS |
| AGATATGGGTGCTTCACATT+CGG | 0.509799 | 7_3:-65354020 | Msa1117130:exon |
| ATGTAATACACAGCAATCAC+AGG | 0.512859 | 7_3:+65350675 | None:intergenic |
| GAATGACATCAAGAAGGCAT+TGG | 0.512896 | 7_3:-65350909 | Msa1117130:CDS |
| CTTTCCGAAAATCGGATACT+CGG | 0.513833 | 7_3:+65353238 | None:intergenic |
| CAGTTTCTGAATCAAGAGCC+GGG | 0.514222 | 7_3:-65353305 | Msa1117130:CDS |
| GGCATTGGGAGAGGCTTGAA+AGG | 0.516902 | 7_3:-65350894 | Msa1117130:exon |
| TTGTAGATAGGTGCTGTGTC+GGG | 0.532272 | 7_3:+65351714 | None:intergenic |
| TCAGTTTCTGAATCAAGAGC+CGG | 0.532928 | 7_3:-65353306 | Msa1117130:CDS |
| AGAGGGAGATATTACTTCCA+TGG | 0.535646 | 7_3:+65351569 | None:intergenic |
| ATTGAATATGTTATGTCTAG+GGG | 0.541174 | 7_3:-65350780 | Msa1117130:three_prime_UTR |
| CATCAAGAAGGCATTGGGAG+AGG | 0.546134 | 7_3:-65350903 | Msa1117130:CDS |
| AGGTGGTTGGACTATAACGC+TGG | 0.546220 | 7_3:+65351601 | None:intergenic |
| TGAACCTAAGCACTTACAAA+GGG | 0.559862 | 7_3:-65353831 | Msa1117130:CDS |
| AAATAATGAATTATATCACA+AGG | 0.577120 | 7_3:+65350716 | None:intergenic |
| TGATTCAGAAACTGATTGCA+CGG | 0.578787 | 7_3:+65353314 | None:intergenic |
| GCTGTAAAGCTCAGTTAACT+GGG | 0.578819 | 7_3:+65353537 | None:intergenic |
| ATGGAAAATGGTGAGGTGGT+TGG | 0.585195 | 7_3:+65351588 | None:intergenic |
| TGAGCTTTACAGCAGATACA+AGG | 0.602591 | 7_3:-65353527 | Msa1117130:CDS |
| GTGAACCTAAGCACTTACAA+AGG | 0.611486 | 7_3:-65353832 | Msa1117130:CDS |
| TTTGTAGAATGACATCAAGA+AGG | 0.616805 | 7_3:-65350915 | Msa1117130:intron |
| TCTGCCTCCTGACTATTCCC+CGG | 0.618651 | 7_3:+65353287 | None:intergenic |
| TACTTCCATGGAAAATGGTG+AGG | 0.621803 | 7_3:+65351581 | None:intergenic |
| TTCCATGGAAAATGGTGAGG+TGG | 0.643848 | 7_3:+65351584 | None:intergenic |
| AGTTTCTGAATCAAGAGCCG+GGG | 0.680134 | 7_3:-65353304 | Msa1117130:CDS |
| TGTAATACACAGCAATCACA+GGG | 0.683418 | 7_3:+65350676 | None:intergenic |
| AGAGCCGGGGAATAGTCAGG+AGG | 0.703784 | 7_3:-65353291 | Msa1117130:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTGTTACTATTTTTT+CGG | + | chr7_3:65350737-65350756 | None:intergenic | 10.0% |
| !!! | TGATTAAATTAGTTTTTAAT+AGG | - | chr7_3:65351192-65351211 | Msa1117130:intron | 10.0% |
| !!! | GATTAAATTAGTTTTTAATA+GGG | - | chr7_3:65351193-65351212 | Msa1117130:intron | 10.0% |
| !! | ATTGATTAAAAACATAAATT+AGG | - | chr7_3:65351922-65351941 | Msa1117130:intron | 10.0% |
| !!! | AATATTTTTTTAAAGTAAAC+AGG | + | chr7_3:65353517-65353536 | None:intergenic | 10.0% |
| !! | AAAAGTTGTAAAAAAATAAA+AGG | - | chr7_3:65353722-65353741 | Msa1117130:intron | 10.0% |
| !!! | TTTTCATAAAATAAAATTGT+TGG | - | chr7_3:65353850-65353869 | Msa1117130:CDS | 10.0% |
| !!! | TTTTTTGTAAAGAGTTAAAA+GGG | + | chr7_3:65350876-65350895 | None:intergenic | 15.0% |
| !!! | TTTTTTTGTAAAGAGTTAAA+AGG | + | chr7_3:65350877-65350896 | None:intergenic | 15.0% |
| !!! | TTTAGCTAATTTTGTTTATT+GGG | - | chr7_3:65351216-65351235 | Msa1117130:intron | 15.0% |
| !!! | TCTTTTCTTTTAATTCATTT+TGG | + | chr7_3:65351696-65351715 | None:intergenic | 15.0% |
| !! | CAAAGAAAAAATAAAACAAA+AGG | + | chr7_3:65352705-65352724 | None:intergenic | 15.0% |
| !! | AATAACAAATCAAATATATC+TGG | + | chr7_3:65353055-65353074 | None:intergenic | 15.0% |
| !!! | ATTTTAAGTTTTACTAACAA+GGG | - | chr7_3:65353567-65353586 | Msa1117130:CDS | 15.0% |
| !! | TAATAAACATGATAGAATAT+AGG | + | chr7_3:65353764-65353783 | None:intergenic | 15.0% |
| !! | AAACAAAATGAATGTATATT+TGG | - | chr7_3:65353984-65354003 | Msa1117130:intron | 15.0% |
| !! | AAATAATGAATTATATCACA+AGG | + | chr7_3:65354099-65354118 | None:intergenic | 15.0% |
| !! | GCAAAGTAACAAAAAAAAAA+GGG | + | chr7_3:65350900-65350919 | None:intergenic | 20.0% |
| !! | AGCAAAGTAACAAAAAAAAA+AGG | + | chr7_3:65350901-65350920 | None:intergenic | 20.0% |
| !! | AAAATTGAATTAGAGAAAGT+GGG | + | chr7_3:65351049-65351068 | None:intergenic | 20.0% |
| !! | AAAAATTGAATTAGAGAAAG+TGG | + | chr7_3:65351050-65351069 | None:intergenic | 20.0% |
| !! | TTTATGGTTTAATTGTTACT+GGG | - | chr7_3:65351108-65351127 | Msa1117130:intron | 20.0% |
| !!! | GTTTTGCTAGTTTTTTAATT+GGG | - | chr7_3:65351162-65351181 | Msa1117130:intron | 20.0% |
| !!! | TTTTGCTAGTTTTTTAATTG+GGG | - | chr7_3:65351163-65351182 | Msa1117130:intron | 20.0% |
| !!! | GTTTAGCTAATTTTGTTTAT+TGG | - | chr7_3:65351215-65351234 | Msa1117130:intron | 20.0% |
| !!! | GATAAAGGTATGATTTTTAA+GGG | - | chr7_3:65351307-65351326 | Msa1117130:intron | 20.0% |
| !!! | AAAAGAGTACAATGATTTTT+TGG | - | chr7_3:65351710-65351729 | Msa1117130:CDS | 20.0% |
| !! | GTTGTAATTATGTTGTTAAT+CGG | - | chr7_3:65351737-65351756 | Msa1117130:intron | 20.0% |
| !! | ACATAACAAGTTTAATAGAA+GGG | + | chr7_3:65351844-65351863 | None:intergenic | 20.0% |
| !! | TTGTCATATTATGATTAACT+AGG | + | chr7_3:65352141-65352160 | None:intergenic | 20.0% |
| !! | TTAATCATAATATGACAACT+AGG | - | chr7_3:65352143-65352162 | Msa1117130:intron | 20.0% |
| !! | TGAGATGATAATCATATAAA+CGG | + | chr7_3:65353348-65353367 | None:intergenic | 20.0% |
| !!! | TTTAGCCTTAATAAATGATA+GGG | + | chr7_3:65353395-65353414 | None:intergenic | 20.0% |
| !! | TAAAGATGTCAATATATCAA+TGG | - | chr7_3:65353411-65353430 | Msa1117130:intron | 20.0% |
| !!! | CATTTTAAGTTTTACTAACA+AGG | - | chr7_3:65353566-65353585 | Msa1117130:CDS | 20.0% |
| !! | AAAAAATAGAAGGAAAAACT+AGG | - | chr7_3:65353626-65353645 | Msa1117130:intron | 20.0% |
| !! | AAAAATAGAAGGAAAAACTA+GGG | - | chr7_3:65353627-65353646 | Msa1117130:intron | 20.0% |
| !! | TGAAAATAGAAAACAAGAAA+AGG | - | chr7_3:65353791-65353810 | Msa1117130:intron | 20.0% |
| !! | GAAAATAGAAAACAAGAAAA+GGG | - | chr7_3:65353792-65353811 | Msa1117130:intron | 20.0% |
| !! | TTATTGAATATGTTATGTCT+AGG | - | chr7_3:65354030-65354049 | Msa1117130:exon | 20.0% |
| !! | TATTGAATATGTTATGTCTA+GGG | - | chr7_3:65354031-65354050 | Msa1117130:exon | 20.0% |
| !! | TTTCGGTTTTGCTTAATATA+GGG | + | chr7_3:65350720-65350739 | None:intergenic | 25.0% |
| !! | TTTTCGGTTTTGCTTAATAT+AGG | + | chr7_3:65350721-65350740 | None:intergenic | 25.0% |
| !!! | TATCTTTGTTTGGTGTTTTT+TGG | + | chr7_3:65350777-65350796 | None:intergenic | 25.0% |
| ! | AAAAACACCAAACAAAGATA+TGG | - | chr7_3:65350777-65350796 | Msa1117130:three_prime_UTR | 25.0% |
| ! | AAAACACCAAACAAAGATAT+GGG | - | chr7_3:65350778-65350797 | Msa1117130:three_prime_UTR | 25.0% |
| !!! | AAACCCTTTTTTTTTCTTAC+AGG | - | chr7_3:65350940-65350959 | Msa1117130:intron | 25.0% |
| ! | CATCCTGTAAGAAAAAAAAA+GGG | + | chr7_3:65350946-65350965 | None:intergenic | 25.0% |
| ! | AAATTGAATTAGAGAAAGTG+GGG | + | chr7_3:65351048-65351067 | None:intergenic | 25.0% |
| ! | CTTTATGGTTTAATTGTTAC+TGG | - | chr7_3:65351107-65351126 | Msa1117130:intron | 25.0% |
| ! | TTATGGTTTAATTGTTACTG+GGG | - | chr7_3:65351109-65351128 | Msa1117130:intron | 25.0% |
| !!! | GGTTTTGCTAGTTTTTTAAT+TGG | - | chr7_3:65351161-65351180 | Msa1117130:intron | 25.0% |
| !!! | TATTGGGTTTTTAATTACAG+TGG | - | chr7_3:65351232-65351251 | Msa1117130:intron | 25.0% |
| !!! | GGATAAAGGTATGATTTTTA+AGG | - | chr7_3:65351306-65351325 | Msa1117130:intron | 25.0% |
| !!! | TCGGTTAAGTAATTTTAAGT+TGG | - | chr7_3:65351756-65351775 | Msa1117130:intron | 25.0% |
| !!! | AATTTTAAGTTGGTCTACAA+CGG | - | chr7_3:65351766-65351785 | Msa1117130:intron | 25.0% |
| ! | GACATAACAAGTTTAATAGA+AGG | + | chr7_3:65351845-65351864 | None:intergenic | 25.0% |
| !!! | ATTCAGGTCAATTTTTGAAA+GGG | - | chr7_3:65352049-65352068 | Msa1117130:intron | 25.0% |
| !! | AAAAAAGTACAAACACAGAA+AGG | + | chr7_3:65352079-65352098 | None:intergenic | 25.0% |
| !!! | TTAACTAGGAGATTTGATTT+TGG | + | chr7_3:65352127-65352146 | None:intergenic | 25.0% |
| !!! | AGCTAATTTTAATTCGATGA+GGG | + | chr7_3:65352478-65352497 | None:intergenic | 25.0% |
| !!! | AAGCTAATTTTAATTCGATG+AGG | + | chr7_3:65352479-65352498 | None:intergenic | 25.0% |
| ! | CTGTAAATTATAGAATCCAT+TGG | - | chr7_3:65352522-65352541 | Msa1117130:intron | 25.0% |
| ! | ATAAACATGTGAGTAAAGTA+AGG | + | chr7_3:65352602-65352621 | None:intergenic | 25.0% |
| ! | AGTTCAATTTCCAATAGAAT+TGG | + | chr7_3:65352668-65352687 | None:intergenic | 25.0% |
| ! | GAAATTGAACTTGAAAAAAC+TGG | - | chr7_3:65352677-65352696 | Msa1117130:intron | 25.0% |
| ! | AAAGATGAATAAACATTCAG+AGG | + | chr7_3:65352948-65352967 | None:intergenic | 25.0% |
| ! | CATCTTTACAAATGATGATT+AGG | - | chr7_3:65352961-65352980 | Msa1117130:intron | 25.0% |
| ! | TATATCTGGTTAACAAACAA+TGG | + | chr7_3:65353041-65353060 | None:intergenic | 25.0% |
| !! | TCTTTAAGGAATTTGTAGAT+AGG | + | chr7_3:65353113-65353132 | None:intergenic | 25.0% |
| ! | TTCCTTAAAGAAAAGAAATC+TGG | - | chr7_3:65353122-65353141 | Msa1117130:intron | 25.0% |
| !! | AACCAGATTTCTTTTCTTTA+AGG | + | chr7_3:65353127-65353146 | None:intergenic | 25.0% |
| !!! | AAAAGAAATCTGGTTTTCTA+GGG | - | chr7_3:65353132-65353151 | Msa1117130:intron | 25.0% |
| ! | CTGATATGTCAAAATTAGAA+TGG | + | chr7_3:65353301-65353320 | None:intergenic | 25.0% |
| ! | ATGATAATCATATAAACGGT+GGG | + | chr7_3:65353344-65353363 | None:intergenic | 25.0% |
| !!! | CTTTAGCCTTAATAAATGAT+AGG | + | chr7_3:65353396-65353415 | None:intergenic | 25.0% |
| ! | CATGTAGTAAATAATTGTGA+TGG | - | chr7_3:65353602-65353621 | Msa1117130:intron | 25.0% |
| !! | TTGTGATGGAAAAAAATAGA+AGG | - | chr7_3:65353616-65353635 | Msa1117130:intron | 25.0% |
| !! | GAAAGCAGTTTAAGAAATTT+TGG | + | chr7_3:65353702-65353721 | None:intergenic | 25.0% |
| ! | ATTGAATATGTTATGTCTAG+GGG | - | chr7_3:65354032-65354051 | Msa1117130:exon | 25.0% |
| !! | GTTGTATCAAAATTCTCTTT+TGG | - | chr7_3:65354073-65354092 | Msa1117130:five_prime_UTR | 25.0% |
| ! | GTCTATGCTAAGATTGATTT+GGG | + | chr7_3:65350681-65350700 | None:intergenic | 30.0% |
| TGTCTATGCTAAGATTGATT+TGG | + | chr7_3:65350682-65350701 | None:intergenic | 30.0% | |
| ! | TTCGGTTTTGCTTAATATAG+GGG | + | chr7_3:65350719-65350738 | None:intergenic | 30.0% |
| !!! | TTTTTTGGTTGTTGAAGATG+TGG | + | chr7_3:65350762-65350781 | None:intergenic | 30.0% |
| AATCCATGAATTCACAGTTA+AGG | - | chr7_3:65350828-65350847 | Msa1117130:three_prime_UTR | 30.0% | |
| AAAAGGGTTTGAGAAAAAGT+AGG | + | chr7_3:65350860-65350879 | None:intergenic | 30.0% | |
| GCATCCTGTAAGAAAAAAAA+AGG | + | chr7_3:65350947-65350966 | None:intergenic | 30.0% | |
| !!! | TTTTTTCTTACAGGATGCAA+AGG | - | chr7_3:65350949-65350968 | Msa1117130:intron | 30.0% |
| ! | TTTTTCTTACAGGATGCAAA+GGG | - | chr7_3:65350950-65350969 | Msa1117130:intron | 30.0% |
| CCATAAAGAGAAAGAAAGAT+TGG | + | chr7_3:65351095-65351114 | None:intergenic | 30.0% | |
| CCAATCTTTCTTTCTCTTTA+TGG | - | chr7_3:65351092-65351111 | Msa1117130:intron | 30.0% | |
| CAGTCTAAGTAACTTCAAAA+TGG | + | chr7_3:65351397-65351416 | None:intergenic | 30.0% | |
| ! | TTTGAAGTTACTTAGACTGA+AGG | - | chr7_3:65351398-65351417 | Msa1117130:intron | 30.0% |
| TTGAAGTTACTTAGACTGAA+GGG | - | chr7_3:65351399-65351418 | Msa1117130:intron | 30.0% | |
| !! | TCAGTTGAGAATGTTTTTGT+TGG | - | chr7_3:65351445-65351464 | Msa1117130:intron | 30.0% |
| !! | TGTTTTTGTTGGTTGATTTC+AGG | - | chr7_3:65351456-65351475 | Msa1117130:intron | 30.0% |
| GGTAAATCCTATATGGTATT+CGG | + | chr7_3:65351873-65351892 | None:intergenic | 30.0% | |
| !! | CAGTTTTGGTAAATCCTATA+TGG | + | chr7_3:65351880-65351899 | None:intergenic | 30.0% |
| ! | TTATACATGGACAACAGTTT+TGG | + | chr7_3:65351894-65351913 | None:intergenic | 30.0% |
| AACTGTTGTCCATGTATAAT+AGG | - | chr7_3:65351895-65351914 | Msa1117130:intron | 30.0% | |
| TCAATACGACCTATTATACA+TGG | + | chr7_3:65351907-65351926 | None:intergenic | 30.0% | |
| !!! | CTTTTTTCAATGACTTGACT+AGG | - | chr7_3:65351986-65352005 | Msa1117130:intron | 30.0% |
| ! | GATTCAGGTCAATTTTTGAA+AGG | - | chr7_3:65352048-65352067 | Msa1117130:intron | 30.0% |
| ! | GCTAGCATTTTTCATCTTTT+TGG | + | chr7_3:65352186-65352205 | None:intergenic | 30.0% |
| TTATTGAGTGAAATCTCATG+TGG | - | chr7_3:65352240-65352259 | Msa1117130:intron | 30.0% | |
| !! | CTGCTGACATTTTTCTAAAA+AGG | - | chr7_3:65352331-65352350 | Msa1117130:intron | 30.0% |
| CGAAGAGATACAATAATTTC+TGG | + | chr7_3:65352402-65352421 | None:intergenic | 30.0% | |
| !!! | GCTAATTTTAATTCGATGAG+GGG | + | chr7_3:65352477-65352496 | None:intergenic | 30.0% |
| TACATTGCTTCATAAGTACA+TGG | + | chr7_3:65352560-65352579 | None:intergenic | 30.0% | |
| AATTTCCAATAGAATTGGAC+AGG | + | chr7_3:65352663-65352682 | None:intergenic | 30.0% | |
| TTGGTAGACGGAAATATATA+GGG | - | chr7_3:65352878-65352897 | Msa1117130:intron | 30.0% | |
| ATATATAGGGAAATTTGTCG+TGG | - | chr7_3:65352891-65352910 | Msa1117130:intron | 30.0% | |
| !!! | GAAAAGAAATCTGGTTTTCT+AGG | - | chr7_3:65353131-65353150 | Msa1117130:intron | 30.0% |
| GATATTACTTCCATGGAAAA+TGG | + | chr7_3:65353239-65353258 | None:intergenic | 30.0% | |
| ! | ATCAGCCAGCTTTAATAATA+TGG | - | chr7_3:65353316-65353335 | Msa1117130:CDS | 30.0% |
| ! | TCAGCCAGCTTTAATAATAT+GGG | - | chr7_3:65353317-65353336 | Msa1117130:CDS | 30.0% |
| TGATAATCATATAAACGGTG+GGG | + | chr7_3:65353343-65353362 | None:intergenic | 30.0% | |
| GATGATAATCATATAAACGG+TGG | + | chr7_3:65353345-65353364 | None:intergenic | 30.0% | |
| TCTCAACCTAATAAGATGTA+AGG | - | chr7_3:65353363-65353382 | Msa1117130:intron | 30.0% | |
| ! | ATAATCTCACATGGTTTTCT+AGG | - | chr7_3:65353441-65353460 | Msa1117130:intron | 30.0% |
| TTCTTGATGTCATTCTACAA+AGG | + | chr7_3:65353898-65353917 | None:intergenic | 30.0% | |
| TTTGTAGAATGACATCAAGA+AGG | - | chr7_3:65353897-65353916 | Msa1117130:intron | 30.0% | |
| TGATTGCTGTGTATTACATT+TGG | - | chr7_3:65354141-65354160 | Msa1117130:five_prime_UTR | 30.0% | |
| CTACCTTAACTGTGAATTCA+TGG | + | chr7_3:65350834-65350853 | None:intergenic | 35.0% | |
| TGAACCTAAGCACTTACAAA+GGG | - | chr7_3:65350981-65351000 | Msa1117130:intron | 35.0% | |
| TAGTTAACGTTGCTTCGAAA+TGG | - | chr7_3:65351017-65351036 | Msa1117130:intron | 35.0% | |
| TACAGCAGATACAAGGATAA+AGG | - | chr7_3:65351292-65351311 | Msa1117130:intron | 35.0% | |
| !!! | GAAGTGCTGATTTTTGCATT+TGG | - | chr7_3:65351333-65351352 | Msa1117130:intron | 35.0% |
| GATTTCAGGACTTGAGATAT+TGG | - | chr7_3:65351470-65351489 | Msa1117130:intron | 35.0% | |
| TGATTCAGAAACTGATTGCA+CGG | + | chr7_3:65351501-65351520 | None:intergenic | 35.0% | |
| CAATAAGCTCAAAAACATCC+AGG | + | chr7_3:65351657-65351676 | None:intergenic | 35.0% | |
| AATCCACTCAAATGAGATTC+AGG | - | chr7_3:65352033-65352052 | Msa1117130:intron | 35.0% | |
| !! | GATAGTGGACATCACTAATA+GGG | + | chr7_3:65352267-65352286 | None:intergenic | 35.0% |
| !! | AGATAGTGGACATCACTAAT+AGG | + | chr7_3:65352268-65352287 | None:intergenic | 35.0% |
| GAAATCCAGCTAATAGATAG+TGG | + | chr7_3:65352282-65352301 | None:intergenic | 35.0% | |
| TCTTTGATACTCTCTTCGTT+AGG | + | chr7_3:65352306-65352325 | None:intergenic | 35.0% | |
| ! | AGACCCTAGTTATTGTTTTC+CGG | - | chr7_3:65352428-65352447 | Msa1117130:intron | 35.0% |
| TCACCGGAAAACAATAACTA+GGG | + | chr7_3:65352434-65352453 | None:intergenic | 35.0% | |
| ATTATAGAATCCATTGGCGA+CGG | - | chr7_3:65352528-65352547 | Msa1117130:intron | 35.0% | |
| ATAGAATTGGACAGGTCAAT+AGG | + | chr7_3:65352655-65352674 | None:intergenic | 35.0% | |
| ATTGACCTGTCCAATTCTAT+TGG | - | chr7_3:65352655-65352674 | Msa1117130:intron | 35.0% | |
| TGAGCAACTATTCAATGTGT+TGG | - | chr7_3:65352859-65352878 | Msa1117130:intron | 35.0% | |
| ! | CTATTCAATGTGTTGGTAGA+CGG | - | chr7_3:65352866-65352885 | Msa1117130:intron | 35.0% |
| ! | GTTGGTAGACGGAAATATAT+AGG | - | chr7_3:65352877-65352896 | Msa1117130:intron | 35.0% |
| ATGAATAAACATTCAGAGGC+AGG | + | chr7_3:65352944-65352963 | None:intergenic | 35.0% | |
| AAAGAGATGCATGACTATCT+AGG | + | chr7_3:65353001-65353020 | None:intergenic | 35.0% | |
| TATTTGCAGATACGTGTGAA+TGG | - | chr7_3:65353074-65353093 | Msa1117130:intron | 35.0% | |
| ! | GTGGAATTTCACCAAGTTTT+TGG | - | chr7_3:65353166-65353185 | Msa1117130:intron | 35.0% |
| TTCCTTGTCAACCAAAAACT+TGG | + | chr7_3:65353180-65353199 | None:intergenic | 35.0% | |
| !!! | AAGTTTTTGGTTGACAAGGA+AGG | - | chr7_3:65353179-65353198 | Msa1117130:intron | 35.0% |
| !!! | AGTTTTTGGTTGACAAGGAA+GGG | - | chr7_3:65353180-65353199 | Msa1117130:intron | 35.0% |
| GAATGAACATAACAGAGACA+TGG | + | chr7_3:65353279-65353298 | None:intergenic | 35.0% | |
| ACCTAATAAGATGTAAGGAG+TGG | - | chr7_3:65353368-65353387 | Msa1117130:intron | 35.0% | |
| TCCACTCCTTACATCTTATT+AGG | + | chr7_3:65353372-65353391 | None:intergenic | 35.0% | |
| GTGGACCCTATCATTTATTA+AGG | - | chr7_3:65353387-65353406 | Msa1117130:intron | 35.0% | |
| GAAAACAAGAAAAGGGAACA+TGG | - | chr7_3:65353799-65353818 | Msa1117130:intron | 35.0% | |
| ATGGCAAATGTGAAACATGT+TGG | - | chr7_3:65353818-65353837 | Msa1117130:CDS | 35.0% | |
| !! | AATGACATCAAGAAGGCATT+GGG | - | chr7_3:65353904-65353923 | Msa1117130:intron | 35.0% |
| !!! | TTATGTCTAGGGGTTTTGTT+TGG | - | chr7_3:65354042-65354061 | Msa1117130:five_prime_UTR | 35.0% |
| TGTAATACACAGCAATCACA+GGG | + | chr7_3:65354139-65354158 | None:intergenic | 35.0% | |
| ATGTAATACACAGCAATCAC+AGG | + | chr7_3:65354140-65354159 | None:intergenic | 35.0% | |
| ! | GAAGCACCCATATCTTTGTT+TGG | + | chr7_3:65350787-65350806 | None:intergenic | 40.0% |
| AGATATGGGTGCTTCACATT+CGG | - | chr7_3:65350792-65350811 | Msa1117130:three_prime_UTR | 40.0% | |
| GTGAACCTAAGCACTTACAA+AGG | - | chr7_3:65350980-65350999 | Msa1117130:intron | 40.0% | |
| CTTTCCCTTTGTAAGTGCTT+AGG | + | chr7_3:65350988-65351007 | None:intergenic | 40.0% | |
| GCTGTAAAGCTCAGTTAACT+GGG | + | chr7_3:65351278-65351297 | None:intergenic | 40.0% | |
| TGCTGTAAAGCTCAGTTAAC+TGG | + | chr7_3:65351279-65351298 | None:intergenic | 40.0% | |
| TGAGCTTTACAGCAGATACA+AGG | - | chr7_3:65351285-65351304 | Msa1117130:intron | 40.0% | |
| TCAGTTTCTGAATCAAGAGC+CGG | - | chr7_3:65351506-65351525 | Msa1117130:intron | 40.0% | |
| ! | AAAGCCGAGTATCCGATTTT+CGG | - | chr7_3:65351570-65351589 | Msa1117130:intron | 40.0% |
| CTTTCCGAAAATCGGATACT+CGG | + | chr7_3:65351577-65351596 | None:intergenic | 40.0% | |
| CGCATTACCTTTCCGAAAAT+CGG | + | chr7_3:65351585-65351604 | None:intergenic | 40.0% | |
| ! | TACCTGATAGTTTTCTGTCC+TGG | - | chr7_3:65351636-65351655 | Msa1117130:CDS | 40.0% |
| ATCCAGGACAGAAAACTATC+AGG | + | chr7_3:65351641-65351660 | None:intergenic | 40.0% | |
| !! | TTAAGTTGGTCTACAACGGT+CGG | - | chr7_3:65351770-65351789 | Msa1117130:intron | 40.0% |
| AACGGTCGGTAATCTTTAAG+CGG | - | chr7_3:65351784-65351803 | Msa1117130:intron | 40.0% | |
| GGAAGATGTCATGTTGCATA+AGG | - | chr7_3:65351806-65351825 | Msa1117130:intron | 40.0% | |
| TCATCGACCGAATACCATAT+AGG | - | chr7_3:65351863-65351882 | Msa1117130:intron | 40.0% | |
| TCAATGACTTGACTAGGTCT+AGG | - | chr7_3:65351992-65352011 | Msa1117130:intron | 40.0% | |
| TGACCTGAATCTCATTTGAG+TGG | + | chr7_3:65352039-65352058 | None:intergenic | 40.0% | |
| GATGTCCACTATCTATTAGC+TGG | - | chr7_3:65352274-65352293 | Msa1117130:intron | 40.0% | |
| TGGAAAAGTTGTGTGTGACA+AGG | + | chr7_3:65352382-65352401 | None:intergenic | 40.0% | |
| GTCACCGGAAAACAATAACT+AGG | + | chr7_3:65352435-65352454 | None:intergenic | 40.0% | |
| CTTACACAATAACGAGTCAC+CGG | + | chr7_3:65352450-65352469 | None:intergenic | 40.0% | |
| TACAAGCAAGTCAACTTGCA+GGG | + | chr7_3:65352629-65352648 | None:intergenic | 40.0% | |
| ATACAAGCAAGTCAACTTGC+AGG | + | chr7_3:65352630-65352649 | None:intergenic | 40.0% | |
| ATTTCACTGTGTGCGATTAC+TGG | - | chr7_3:65352754-65352773 | Msa1117130:intron | 40.0% | |
| ! | TTTGTAGATAGGTGCTGTGT+CGG | + | chr7_3:65353102-65353121 | None:intergenic | 40.0% |
| !!! | AATCTGGTTTTCTAGGGTCT+AGG | - | chr7_3:65353138-65353157 | Msa1117130:intron | 40.0% |
| !! | TTCTAGGGTCTAGGATAAAG+TGG | - | chr7_3:65353147-65353166 | Msa1117130:intron | 40.0% |
| !!! | CACCAAGTTTTTGGTTGACA+AGG | - | chr7_3:65353175-65353194 | Msa1117130:intron | 40.0% |
| TACTTCCATGGAAAATGGTG+AGG | + | chr7_3:65353234-65353253 | None:intergenic | 40.0% | |
| AGAGGGAGATATTACTTCCA+TGG | + | chr7_3:65353246-65353265 | None:intergenic | 40.0% | |
| GACATGGAGAGAAATAGAGA+GGG | + | chr7_3:65353263-65353282 | None:intergenic | 40.0% | |
| AGACATGGAGAGAAATAGAG+AGG | + | chr7_3:65353264-65353283 | None:intergenic | 40.0% | |
| ! | GAATGACATCAAGAAGGCAT+TGG | - | chr7_3:65353903-65353922 | Msa1117130:intron | 40.0% |
| TGCTGTGTATTACATTTGGC+TGG | - | chr7_3:65354145-65354164 | Msa1117130:five_prime_UTR | 40.0% | |
| CAGTTTCTGAATCAAGAGCC+GGG | - | chr7_3:65351507-65351526 | Msa1117130:intron | 45.0% | |
| AGTTTCTGAATCAAGAGCCG+GGG | - | chr7_3:65351508-65351527 | Msa1117130:intron | 45.0% | |
| !! | CTCGGCTTTGAATCTTGTAC+AGG | + | chr7_3:65351559-65351578 | None:intergenic | 45.0% |
| ! | CGAGTATCCGATTTTCGGAA+AGG | - | chr7_3:65351575-65351594 | Msa1117130:intron | 45.0% |
| ACGGTCGGTAATCTTTAAGC+GGG | - | chr7_3:65351785-65351804 | Msa1117130:intron | 45.0% | |
| GTAAGGCGTGAAACAGATGA+AGG | + | chr7_3:65352585-65352604 | None:intergenic | 45.0% | |
| ACTGTGTGCGATTACTGGAT+TGG | - | chr7_3:65352759-65352778 | Msa1117130:intron | 45.0% | |
| !! | ACTGGATTGGTCTACAACTC+TGG | - | chr7_3:65352772-65352791 | Msa1117130:intron | 45.0% |
| !! | CTGGATTGGTCTACAACTCT+GGG | - | chr7_3:65352773-65352792 | Msa1117130:intron | 45.0% |
| GTTGCTCATTTGACAAGACG+CGG | + | chr7_3:65352847-65352866 | None:intergenic | 45.0% | |
| ! | AATTTGTCGTGGTGTCAGCT+AGG | - | chr7_3:65352902-65352921 | Msa1117130:intron | 45.0% |
| ! | TTGTAGATAGGTGCTGTGTC+GGG | + | chr7_3:65353101-65353120 | None:intergenic | 45.0% |
| ATGGAAAATGGTGAGGTGGT+TGG | + | chr7_3:65353227-65353246 | None:intergenic | 45.0% | |
| ! | AACCACCTCACCATTTTCCA+TGG | - | chr7_3:65353226-65353245 | Msa1117130:intron | 45.0% |
| TTCCATGGAAAATGGTGAGG+TGG | + | chr7_3:65353231-65353250 | None:intergenic | 45.0% | |
| GGGGCCCATATTATTAAAGC+TGG | + | chr7_3:65353324-65353343 | None:intergenic | 45.0% | |
| GGAGTGAGCATAATCTCACA+TGG | - | chr7_3:65353432-65353451 | Msa1117130:intron | 45.0% | |
| !! | AATTTAATTAATTGTTTAAT+AGG | - | chr7_3:65351139-65351158 | Msa1117130:intron | 5.0% |
| !! | ATTTAATTAATTGTTTAATA+GGG | - | chr7_3:65351140-65351159 | Msa1117130:intron | 5.0% |
| AGAATCCATTGGCGACGGAT+TGG | - | chr7_3:65352533-65352552 | Msa1117130:intron | 50.0% | |
| ! | GAATCCATTGGCGACGGATT+GGG | - | chr7_3:65352534-65352553 | Msa1117130:intron | 50.0% |
| AGCAAGTCAACTTGCAGGGT+TGG | + | chr7_3:65352625-65352644 | None:intergenic | 50.0% | |
| AGGTGGTTGGACTATAACGC+TGG | + | chr7_3:65353214-65353233 | None:intergenic | 50.0% | |
| !! | CATCAAGAAGGCATTGGGAG+AGG | - | chr7_3:65353909-65353928 | Msa1117130:intron | 50.0% |
| TCAAGAGCCGGGGAATAGTC+AGG | - | chr7_3:65351518-65351537 | Msa1117130:intron | 55.0% | |
| TCTGCCTCCTGACTATTCCC+CGG | + | chr7_3:65351528-65351547 | None:intergenic | 55.0% | |
| ! | GGCATTGGGAGAGGCTTGAA+AGG | - | chr7_3:65353918-65353937 | Msa1117130:intron | 55.0% |
| AGAGCCGGGGAATAGTCAGG+AGG | - | chr7_3:65351521-65351540 | Msa1117130:intron | 60.0% | |
| ATGGCCCAATCCGTCGCCAA+TGG | + | chr7_3:65352541-65352560 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 65350643 | 65354191 | 65350643 | ID=Msa1117130;Name=Msa1117130 |
| chr7_3 | mRNA | 65350643 | 65354191 | 65350643 | ID=Msa1117130-mRNA-1;Parent=Msa1117130;Name=Msa1117130-mRNA-1;_AED=0.05;_eAED=0.05;_QI=153|0.8|0.83|1|0.8|0.83|6|255|178 |
| chr7_3 | exon | 65350643 | 65350930 | 65350643 | ID=Msa1117130-mRNA-1:exon:15538;Parent=Msa1117130-mRNA-1 |
| chr7_3 | exon | 65351584 | 65351751 | 65351584 | ID=Msa1117130-mRNA-1:exon:15537;Parent=Msa1117130-mRNA-1 |
| chr7_3 | exon | 65353238 | 65353356 | 65353238 | ID=Msa1117130-mRNA-1:exon:15536;Parent=Msa1117130-mRNA-1 |
| chr7_3 | exon | 65353521 | 65353620 | 65353521 | ID=Msa1117130-mRNA-1:exon:15535;Parent=Msa1117130-mRNA-1 |
| chr7_3 | exon | 65353810 | 65353872 | 65353810 | ID=Msa1117130-mRNA-1:exon:15534;Parent=Msa1117130-mRNA-1 |
| chr7_3 | exon | 65353985 | 65354191 | 65353985 | ID=Msa1117130-mRNA-1:exon:15533;Parent=Msa1117130-mRNA-1 |
| chr7_3 | five_prime_UTR | 65354039 | 65354191 | 65354039 | ID=Msa1117130-mRNA-1:five_prime_utr;Parent=Msa1117130-mRNA-1 |
| chr7_3 | CDS | 65353985 | 65354038 | 65353985 | ID=Msa1117130-mRNA-1:cds;Parent=Msa1117130-mRNA-1 |
| chr7_3 | CDS | 65353810 | 65353872 | 65353810 | ID=Msa1117130-mRNA-1:cds;Parent=Msa1117130-mRNA-1 |
| chr7_3 | CDS | 65353521 | 65353620 | 65353521 | ID=Msa1117130-mRNA-1:cds;Parent=Msa1117130-mRNA-1 |
| chr7_3 | CDS | 65353238 | 65353356 | 65353238 | ID=Msa1117130-mRNA-1:cds;Parent=Msa1117130-mRNA-1 |
| chr7_3 | CDS | 65351584 | 65351751 | 65351584 | ID=Msa1117130-mRNA-1:cds;Parent=Msa1117130-mRNA-1 |
| chr7_3 | CDS | 65350898 | 65350930 | 65350898 | ID=Msa1117130-mRNA-1:cds;Parent=Msa1117130-mRNA-1 |
| chr7_3 | three_prime_UTR | 65350643 | 65350897 | 65350643 | ID=Msa1117130-mRNA-1:three_prime_utr;Parent=Msa1117130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
