AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1021720

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1021720 MtrunA17_Chr7g0238231 81.212 495 57 3 1 464 1 490 0.0 788
Msa1021720 MtrunA17_Chr7g0238241 76.681 476 92 6 1 465 1 468 0.0 714
Msa1021720 MtrunA17_Chr7g0238511 68.737 467 112 3 1 464 1 436 0.0 641
Msa1021720 MtrunA17_Chr7g0238111 69.165 467 105 5 1 464 1 431 0.0 636
Msa1021720 MtrunA17_Chr7g0238101 65.849 489 134 8 1 465 1 480 0.0 618
Msa1021720 MtrunA17_Chr7g0238141 62.661 466 153 6 1 464 1 447 0.0 545
Msa1021720 MtrunA17_Chr7g0238131 64.286 420 141 5 51 465 1 416 0.0 525
Msa1021720 MtrunA17_Chr7g0238191 61.884 467 147 12 1 464 1 439 0.0 514
Msa1021720 MtrunA17_Chr7g0238181 66.667 393 92 4 72 464 1 354 3.62e-180 508
Msa1021720 MtrunA17_Chr7g0238171 52.345 533 171 6 1 464 1 519 2.14e-179 512
Msa1021720 MtrunA17_Chr7g0238251 55.227 507 165 6 1 463 1 489 2.28e-176 503
Msa1021720 MtrunA17_Chr7g0238151 70.722 263 67 4 2 261 1 256 2.40e-127 370
Msa1021720 MtrunA17_Chr7g0238291 66.292 267 75 4 1 262 1 257 1.39e-114 337
Msa1021720 MtrunA17_Chr7g0232531 65.428 269 77 5 1 261 1 261 1.66e-111 329
Msa1021720 MtrunA17_Chr7g0238091 75.916 191 46 0 274 464 29 219 2.22e-103 307
Msa1021720 MtrunA17_Chr8g0352511 38.142 506 232 12 4 463 2 472 5.27e-102 313
Msa1021720 MtrunA17_Chr7g0238051 60.985 264 64 2 240 464 102 365 5.65e-102 309
Msa1021720 MtrunA17_Chr7g0238211 85.165 182 27 0 282 463 1 182 8.48e-102 301
Msa1021720 MtrunA17_Chr8g0354591 38.854 471 219 10 27 463 24 459 3.42e-100 308
Msa1021720 MtrunA17_Chr7g0238071 78.723 188 36 2 1 188 1 184 4.86e-100 298
Msa1021720 MtrunA17_Chr7g0238201 79.121 182 37 1 1 182 1 181 4.65e-96 287
Msa1021720 MtrunA17_Chr7g0238021 72.222 198 48 2 72 262 1 198 6.14e-95 285
Msa1021720 MtrunA17_Chr7g0238031 73.980 196 49 2 2 196 1 195 3.01e-94 295
Msa1021720 MtrunA17_Chr7g0238081 74.176 182 39 1 282 463 1 174 1.42e-93 280
Msa1021720 MtrunA17_Chr8g0354581 37.376 503 233 13 8 464 1 467 9.69e-89 278
Msa1021720 MtrunA17_Chr7g0232521 70.370 189 56 0 269 457 25 213 1.13e-87 266
Msa1021720 MtrunA17_Chr7g0238281 61.538 182 69 1 283 464 3 183 4.37e-66 210
Msa1021720 MtrunA17_Chr1g0170061 51.691 207 71 8 2 204 1 182 6.94e-51 173
Msa1021720 MtrunA17_Chr8g0352491 47.568 185 82 2 294 463 2 186 9.95e-51 170
Msa1021720 MtrunA17_Chr8g0354621 49.342 152 64 1 325 463 2 153 1.60e-43 150
Msa1021720 MtrunA17_Chr5g0439641 29.157 439 250 13 46 462 49 448 1.78e-43 159
Msa1021720 MtrunA17_Chr5g0439721 29.002 431 250 11 43 461 46 432 3.79e-38 144
Msa1021720 MtrunA17_Chr5g0401791 28.728 456 278 12 25 461 99 526 6.23e-38 145
Msa1021720 MtrunA17_Chr8g0354611 35.743 249 113 8 27 266 24 234 1.01e-34 130
Msa1021720 MtrunA17_Chr5g0439681 37.640 178 106 2 286 462 136 309 5.06e-31 121
Msa1021720 MtrunA17_Chr8g0352501 44.604 139 60 4 50 180 7 136 8.66e-29 113
Msa1021720 MtrunA17_Chr8g0335061 23.581 458 285 11 21 453 15 432 3.64e-26 110
Msa1021720 MtrunA17_Chr8g0334971 24.411 467 271 13 21 453 15 433 4.20e-26 110
Msa1021720 MtrunA17_Chr2g0297831 26.535 456 274 16 14 457 54 460 1.25e-25 109
Msa1021720 MtrunA17_Chr3g0118601 25.367 477 280 18 12 461 22 449 1.40e-25 108
Msa1021720 MtrunA17_Chr2g0300311 26.157 432 249 16 44 457 65 444 1.18e-24 106
Msa1021720 MtrunA17_Chr8g0334951 25.316 395 230 11 46 418 46 397 2.88e-24 104
Msa1021720 MtrunA17_Chr8g0354871 31.140 228 137 6 244 461 164 381 3.62e-24 103
Msa1021720 MtrunA17_Chr6g0452551 26.739 460 274 18 4 457 2 404 7.77e-24 103
Msa1021720 MtrunA17_Chr8g0335011 24.051 474 286 13 29 453 38 486 2.93e-23 102
Msa1021720 MtrunA17_Chr5g0440401 34.831 178 108 4 286 461 43 214 5.77e-23 97.1
Msa1021720 MtrunA17_Chr7g0265891 24.485 437 257 13 44 460 66 449 2.65e-22 99.4
Msa1021720 MtrunA17_Chr8g0334911 25.503 447 243 13 6 418 4 394 2.82e-22 99.0
Msa1021720 MtrunA17_Chr2g0297821 33.333 183 113 7 287 463 4 183 3.33e-22 94.0
Msa1021720 MtrunA17_Chr6g0452161 26.573 429 250 15 43 457 39 416 4.34e-22 98.2
Msa1021720 MtrunA17_Chr6g0452611 26.682 431 244 18 39 457 34 404 5.20e-22 97.8
Msa1021720 MtrunA17_Chr6g0452501 25.607 453 270 17 4 447 2 396 7.33e-21 94.4
Msa1021720 MtrunA17_Chr6g0457371 25.754 431 244 14 39 457 35 401 1.03e-20 94.0
Msa1021720 MtrunA17_Chr6g0452591 25.822 426 247 15 43 457 69 436 1.93e-20 93.6
Msa1021720 MtrunA17_Chr6g0452531 25.355 422 242 16 39 447 35 396 1.94e-20 93.2
Msa1021720 MtrunA17_Chr8g0335071 22.976 457 279 15 29 456 39 451 2.58e-20 93.2
Msa1021720 MtrunA17_Chr6g0452561 25.115 434 255 16 43 457 39 421 7.04e-20 91.7
Msa1021720 MtrunA17_Chr8g0335021 23.007 439 272 13 43 452 41 442 2.57e-16 80.9
Msa1021720 MtrunA17_Chr2g0296801 25.817 306 167 11 161 457 90 344 3.15e-16 80.1
Msa1021720 MtrunA17_Chr6g0452571 29.097 299 165 13 164 456 86 343 4.23e-15 76.6
Msa1021720 MtrunA17_Chr6g0452601 30.939 181 113 6 282 457 241 414 9.73e-14 72.8
Msa1021720 MtrunA17_Chr7g0218171 31.214 173 107 6 290 457 128 293 1.07e-13 71.6
Msa1021720 MtrunA17_Chr4g0002901 29.787 141 97 2 322 461 411 550 7.65e-12 67.4
Msa1021720 MtrunA17_Chr3g0138001 24.113 423 239 15 46 446 43 405 3.14e-11 65.5
Msa1021720 MtrunA17_Chr4g0002911 29.078 141 98 2 322 461 409 548 5.66e-11 64.7
Msa1021720 MtrunA17_Chr7g0220521 26.816 179 114 5 287 458 369 537 5.90e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1021720 AT3G50120.1 31.486 451 259 20 29 461 105 523 1.93e-43 160
Msa1021720 AT3G50140.1 29.018 448 258 17 39 463 123 533 5.76e-37 142
Msa1021720 AT3G50180.1 26.247 461 262 13 29 464 180 587 3.06e-36 141
Msa1021720 AT3G50150.1 25.885 452 274 12 29 461 92 501 4.21e-35 137
Msa1021720 AT3G50130.1 29.670 455 263 19 29 463 141 558 4.59e-34 135
Msa1021720 AT3G50170.1 26.652 454 275 13 29 461 115 531 6.41e-34 134
Msa1021720 AT3G50160.1 28.442 443 252 19 29 461 106 493 1.79e-33 132
Msa1021720 AT5G22540.1 28.770 431 246 15 44 460 46 429 1.24e-31 126
Msa1021720 AT3G50190.1 25.346 434 245 14 46 461 113 485 3.20e-27 114
Msa1021720 AT4G31980.1 26.636 428 242 14 46 461 310 677 2.49e-26 112
Msa1021720 AT3G44710.1 24.169 451 298 11 40 460 59 495 2.60e-26 112
Msa1021720 AT5G11290.2 25.408 429 248 15 46 461 50 419 7.78e-26 109
Msa1021720 AT3G47200.1 25.056 443 259 16 44 461 61 455 2.10e-24 105
Msa1021720 AT3G47200.2 25.056 443 259 16 44 461 61 455 2.10e-24 105
Msa1021720 AT2G36430.1 26.606 436 251 14 46 464 62 445 3.80e-24 105
Msa1021720 AT2G44930.1 26.998 463 247 18 29 457 86 491 4.05e-24 105
Msa1021720 AT5G22550.2 24.838 463 264 17 43 460 58 481 1.99e-21 97.4
Msa1021720 AT2G28580.5 25.390 449 271 18 24 461 103 498 8.06e-21 95.5
Msa1021720 AT2G28580.4 25.390 449 271 18 24 461 117 512 8.80e-21 95.5
Msa1021720 AT1G67150.4 25.160 469 251 15 27 464 6 405 1.58e-20 94.0
Msa1021720 AT1G67150.1 25.160 469 251 15 27 464 6 405 1.58e-20 94.0
Msa1021720 AT1G67150.2 24.788 472 253 14 27 464 6 409 1.88e-20 93.6
Msa1021720 AT3G47250.3 22.870 446 267 14 44 461 76 472 2.32e-20 94.0
Msa1021720 AT3G47250.2 22.870 446 267 14 44 461 76 472 2.32e-20 94.0
Msa1021720 AT3G47250.1 22.870 446 267 14 44 461 76 472 2.32e-20 94.0
Msa1021720 AT2G28580.6 26.452 465 263 18 24 461 35 447 1.02e-19 92.0
Msa1021720 AT2G28580.1 26.452 465 263 18 24 461 103 515 1.10e-19 92.0
Msa1021720 AT2G28580.2 26.452 465 263 18 24 461 117 529 1.40e-19 92.0
Msa1021720 AT1G67150.3 32.338 201 128 4 265 464 169 362 2.59e-19 89.7
Msa1021720 AT3G60470.1 25.048 519 285 20 29 461 34 534 4.21e-19 90.5
Msa1021720 AT5G11290.1 25.648 347 197 13 128 461 52 350 2.36e-18 86.7
Msa1021720 AT5G22550.1 23.312 459 227 14 43 460 58 432 6.31e-16 80.1
Msa1021720 AT3G02645.1 24.416 471 248 22 46 440 60 498 3.47e-11 65.9

Find 113 sgRNAs with CRISPR-Local

Find 313 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTAACACAGAAACATATTT+TGG 0.219166 7_1:-46635898 Msa1021720:CDS
TCTGCCACCCTTTGTATCTT+TGG 0.234183 7_1:+46637491 None:intergenic
CTTCAGTTCATTAATGTTAT+CGG 0.261957 7_1:+46637292 None:intergenic
ACAGTAATGATCATGTATTT+TGG 0.264141 7_1:+46635867 None:intergenic
CCAAAATATGTTTCTGTGTT+AGG 0.265552 7_1:+46635898 None:intergenic
CGCCGGTTCCTCTTATTATC+TGG 0.270288 7_1:+46636957 None:intergenic
ACTTATGATATTGAAAAGTT+TGG 0.307798 7_1:+46635933 None:intergenic
TTACCAGAAGACAATTATTA+TGG 0.307854 7_1:+46635615 None:intergenic
CTCAGTACCTTCACATCTTC+AGG 0.311435 7_1:+46636003 None:intergenic
AAATGCGTAATATATATAGA+TGG 0.326682 7_1:+46637654 None:intergenic
GTGCCCTGGTTCATCAAGTT+TGG 0.331312 7_1:+46637142 None:intergenic
TCATTCATTCAATATGATAA+TGG 0.337108 7_1:+46637588 None:intergenic
ATGTTCTTTGCTACATATCT+TGG 0.338832 7_1:-46637171 Msa1021720:CDS
ATTTCCTCAAATGTCATCAT+TGG 0.350708 7_1:-46636986 Msa1021720:CDS
CTAATAAAGGTGGTTCGTTA+TGG 0.356385 7_1:-46635707 Msa1021720:exon
CCGTAGTCGTTCTCAAAATC+TGG 0.357750 7_1:+46636069 None:intergenic
CGACCATAATAATTGTCTTC+TGG 0.362723 7_1:-46635618 Msa1021720:three_prime_UTR
ACCAGGGCACATGAATATTA+AGG 0.386593 7_1:-46637129 Msa1021720:CDS
AAAGCCTTCAAGAGAGTTGC+TGG 0.389289 7_1:+46637238 None:intergenic
GAATATTAAGGTTGATCAAC+TGG 0.390109 7_1:-46637117 Msa1021720:CDS
GACACATCTCATATGCTATC+AGG 0.391502 7_1:+46636091 None:intergenic
TTAACCAGCAACTCTCTTGA+AGG 0.400110 7_1:-46637242 Msa1021720:CDS
TTAACCCGGCTTGCTAATAA+AGG 0.402435 7_1:-46635720 Msa1021720:exon
GTGAAGGTACTGAGATCAAA+AGG 0.406085 7_1:-46635994 Msa1021720:CDS
AGCAACTCTCTTGAAGGCTT+TGG 0.407619 7_1:-46637236 Msa1021720:CDS
ACGAAGCTATCAAAGAGAAT+TGG 0.413469 7_1:-46636311 Msa1021720:CDS
CACTTACTTCAGCAGTCCTT+GGG 0.428313 7_1:-46635809 Msa1021720:CDS
TCAGATTTGTATTGTCATGA+TGG 0.429073 7_1:+46637402 None:intergenic
ACACTTACTTCAGCAGTCCT+TGG 0.430358 7_1:-46635810 Msa1021720:CDS
ATTCAATATGATAATGGTTG+AGG 0.434113 7_1:+46637594 None:intergenic
TCAAAATACCTCGAGAATAC+AGG 0.446385 7_1:-46637347 Msa1021720:CDS
TTCTGCAGCGGACCATCCTT+CGG 0.450309 7_1:+46636167 None:intergenic
CAATATCATAAGTACTGACT+TGG 0.453322 7_1:-46635923 Msa1021720:CDS
TCGTGGATGTTGTTCGTGGA+TGG 0.456654 7_1:-46637194 Msa1021720:CDS
TGTCGTCTTTCCACAATAGC+TGG 0.460841 7_1:+46637039 None:intergenic
AGGACCTATTGACACTAACT+TGG 0.462576 7_1:+46637427 None:intergenic
TTTCCTCAAATGTCATCATT+GGG 0.463432 7_1:-46636985 Msa1021720:CDS
CACCAGATAATAAGAGGAAC+CGG 0.465341 7_1:-46636959 Msa1021720:CDS
GTGTCGTCCACAACGATCTC+AGG 0.469017 7_1:+46636135 None:intergenic
TTCAATATGATAATGGTTGA+GGG 0.469992 7_1:+46637595 None:intergenic
TCAACTGGTTCTTGTGATGA+TGG 0.477187 7_1:-46637102 Msa1021720:CDS
ATAATAATTGTCTTCTGGTA+AGG 0.477999 7_1:-46635613 Msa1021720:three_prime_UTR
TCACCCAAGTTAGTGTCAAT+AGG 0.487618 7_1:-46637431 Msa1021720:CDS
GAGAGAAGTACAAGCTTATG+TGG 0.490975 7_1:-46637373 Msa1021720:CDS
CTCATAGTCAAGACTCAAGA+AGG 0.496454 7_1:+46635529 None:intergenic
GGGCCACACCAGATAATAAG+AGG 0.510517 7_1:-46636965 Msa1021720:CDS
TTTGTATTGTCATGATGGAT+AGG 0.510648 7_1:+46637407 None:intergenic
ACCTTAATATTCATGTGCCC+TGG 0.515664 7_1:+46637128 None:intergenic
ACCACCTTTATTAGCAAGCC+GGG 0.522064 7_1:+46635716 None:intergenic
CGATAACATTAATGAACTGA+AGG 0.522908 7_1:-46637291 Msa1021720:CDS
TCAAGCACACAACACAGAAA+AGG 0.523491 7_1:+46635486 None:intergenic
ACGTCAAAATGATGACATAC+AGG 0.524199 7_1:-46636266 Msa1021720:CDS
CTGAAGATCAAGAAGATGAG+TGG 0.525381 7_1:+46636845 None:intergenic
TTCTTACTTTCATTCAGACA+TGG 0.527343 7_1:-46635750 Msa1021720:CDS
GACAATACAAATCTGAAGAC+AGG 0.529122 7_1:-46637395 Msa1021720:CDS
TGCTATCAGGTTGAGGAAAG+TGG 0.531600 7_1:+46636104 None:intergenic
TACACGACCAAAGATACAAA+GGG 0.534959 7_1:-46637498 Msa1021720:CDS
ACATTTGAGGAAATCTATCA+TGG 0.536254 7_1:+46636995 None:intergenic
AACCACCTTTATTAGCAAGC+CGG 0.537208 7_1:+46635715 None:intergenic
AATGCGTAATATATATAGAT+GGG 0.539598 7_1:+46637655 None:intergenic
ACGTAGTACTCCAGCTATTG+TGG 0.547855 7_1:-46637049 Msa1021720:CDS
AGAGACATTGATTTCTCCGA+AGG 0.548606 7_1:-46636183 Msa1021720:CDS
TTATCATATTGAATGAATGA+TGG 0.550502 7_1:-46637585 Msa1021720:exon
TCTCATATGCTATCAGGTTG+AGG 0.554475 7_1:+46636097 None:intergenic
TCGGAGAAATCAATGTCTCT+AGG 0.556164 7_1:+46636186 None:intergenic
CAACTTCCTCATCACTCCCA+AGG 0.559578 7_1:+46635956 None:intergenic
AAGAAGATGAGTGGGTGTCT+CGG 0.566895 7_1:+46636854 None:intergenic
ACATTGATTTCTCCGAAGGA+TGG 0.568391 7_1:-46636179 Msa1021720:CDS
GTTCCTCTTATTATCTGGTG+TGG 0.571609 7_1:+46636962 None:intergenic
GACATGGTTTGCGATTAACC+CGG 0.572438 7_1:-46635734 Msa1021720:CDS
CAATCAAGAGACTACCAATA+CGG 0.578651 7_1:-46636925 Msa1021720:CDS
AACTTCCTCATCACTCCCAA+GGG 0.581619 7_1:+46635957 None:intergenic
ATAATAAGAGGAACCGGCGG+GGG 0.582586 7_1:-46636953 Msa1021720:CDS
AGCAGCAATGAATGCAGTAA+TGG 0.582740 7_1:+46635786 None:intergenic
ATACAAGATCTAAAAGCAGT+AGG 0.583283 7_1:-46636240 Msa1021720:CDS
CAGAAGACAATTATTATGGT+CGG 0.583848 7_1:+46635619 None:intergenic
GTTGTCGTGGATGTTGTTCG+TGG 0.591132 7_1:-46637198 Msa1021720:CDS
AAAGCCAAACTTGATGAACC+AGG 0.591667 7_1:-46637146 Msa1021720:CDS
CGACCATCCTGAAGATGTGA+AGG 0.592905 7_1:-46636010 Msa1021720:CDS
AATAGCTGGAGTACTACGTA+AGG 0.594565 7_1:+46637053 None:intergenic
TGAAGGTACTGAGATCAAAA+GGG 0.595602 7_1:-46635993 Msa1021720:CDS
AGATAATAAGAGGAACCGGC+GGG 0.597777 7_1:-46636955 Msa1021720:CDS
TAGTGTACTTCACTTCTCTG+TGG 0.599204 7_1:-46635586 Msa1021720:three_prime_UTR
ACCCGGCTTGCTAATAAAGG+TGG 0.600299 7_1:-46635717 Msa1021720:exon
ATACACGACCAAAGATACAA+AGG 0.606866 7_1:-46637499 Msa1021720:CDS
TGTGTAGATCACGTGGATTG+CGG 0.610938 7_1:+46637324 None:intergenic
GGACCTATTGACACTAACTT+GGG 0.613813 7_1:+46637428 None:intergenic
AATTCTTCCTGAGATCGTTG+TGG 0.616047 7_1:-46636142 Msa1021720:CDS
CAATTCCCTTGGGAGTGATG+AGG 0.618966 7_1:-46635962 Msa1021720:CDS
GATAATAAGAGGAACCGGCG+GGG 0.620009 7_1:-46636954 Msa1021720:CDS
ACTGTAATAGATGCAATACA+TGG 0.620243 7_1:-46635849 Msa1021720:CDS
TGAAGATCAAGAAGATGAGT+GGG 0.623872 7_1:+46636846 None:intergenic
CCTCATTACATCTACACCCA+AGG 0.626155 7_1:-46636811 Msa1021720:intron
GCCTTGAAGAAAAGTTGTCG+TGG 0.631104 7_1:-46637211 Msa1021720:CDS
TCTGAATGAAAGTAAGAACA+AGG 0.635749 7_1:+46635755 None:intergenic
CCTTGGGTGTAGATGTAATG+AGG 0.638964 7_1:+46636811 None:intergenic
TGGCCCAATGATGACATTTG+AGG 0.640812 7_1:+46636982 None:intergenic
ATGAATGCAGTAATGGCCCA+AGG 0.644228 7_1:+46635793 None:intergenic
GACTTAAGTCAAGCAAGACA+CGG 0.649997 7_1:-46636212 Msa1021720:CDS
AGAGAAGTACAAGCTTATGT+GGG 0.651797 7_1:-46637372 Msa1021720:CDS
CAGATAATAAGAGGAACCGG+CGG 0.653004 7_1:-46636956 Msa1021720:CDS
AGGAAGAATTAGTTCTGCAG+CGG 0.655121 7_1:+46636155 None:intergenic
ATGCAATACATGGATAGCAG+AGG 0.664321 7_1:-46635839 Msa1021720:CDS
GATAACATTAATGAACTGAA+GGG 0.666325 7_1:-46637290 Msa1021720:CDS
GTACCTTCACATCTTCAGGA+TGG 0.667216 7_1:+46636007 None:intergenic
TCATAGTCAAGACTCAAGAA+GGG 0.671032 7_1:+46635530 None:intergenic
TAGTGTATTGATAATGAATG+TGG 0.673103 7_1:-46636877 Msa1021720:CDS
AAGCCAAACTTGATGAACCA+GGG 0.679370 7_1:-46637145 Msa1021720:CDS
GATTGCGGCCTGTATTCTCG+AGG 0.689516 7_1:+46637339 None:intergenic
CTGAATGAAAGTAAGAACAA+GGG 0.695408 7_1:+46635756 None:intergenic
TATCAGGTTGAGGAAAGTGG+CGG 0.710159 7_1:+46636107 None:intergenic
ACGACCAAAGATACAAAGGG+TGG 0.724861 7_1:-46637495 Msa1021720:CDS
TTAAGTCAAGCAAGACACGG+AGG 0.781503 7_1:-46636209 Msa1021720:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACTTGAAAATTAATGAT+AGG + chr7_1:46636469-46636488 None:intergenic 15.0%
!!! ATCTATGTTTTAAACATAAA+TGG + chr7_1:46636756-46636775 None:intergenic 15.0%
!! TAAAATTTCGTAACAAAAAT+AGG - chr7_1:46637431-46637450 Msa1021720:CDS 15.0%
!! AAAACTTGAAAATTAATGAT+AGG + chr7_1:46636469-46636488 None:intergenic 15.0%
!!! ATCTATGTTTTAAACATAAA+TGG + chr7_1:46636756-46636775 None:intergenic 15.0%
!! TAAAATTTCGTAACAAAAAT+AGG - chr7_1:46637431-46637450 Msa1021720:CDS 15.0%
!! AATGCGTAATATATATAGAT+GGG + chr7_1:46635443-46635462 None:intergenic 20.0%
!! AAATGCGTAATATATATAGA+TGG + chr7_1:46635444-46635463 None:intergenic 20.0%
!! TCATTCATTCAATATGATAA+TGG + chr7_1:46635510-46635529 None:intergenic 20.0%
!! TTATCATATTGAATGAATGA+TGG - chr7_1:46635510-46635529 Msa1021720:three_prime_UTR 20.0%
!! AAATAACGACAGAAATATTA+GGG - chr7_1:46636315-46636334 Msa1021720:CDS 20.0%
!! TGAAATTTAGAAATGGAAAA+AGG + chr7_1:46636409-46636428 None:intergenic 20.0%
!! ATAGTGATGAAATTTAGAAA+TGG + chr7_1:46636416-46636435 None:intergenic 20.0%
!!! CAAAATGCGATATTTTATTA+AGG - chr7_1:46636687-46636706 Msa1021720:intron 20.0%
!!! TGTTTTAAACATAAATGGAT+TGG + chr7_1:46636751-46636770 None:intergenic 20.0%
!! ACTTATGATATTGAAAAGTT+TGG + chr7_1:46637165-46637184 None:intergenic 20.0%
!! AATGCGTAATATATATAGAT+GGG + chr7_1:46635443-46635462 None:intergenic 20.0%
!! AAATGCGTAATATATATAGA+TGG + chr7_1:46635444-46635463 None:intergenic 20.0%
!! TCATTCATTCAATATGATAA+TGG + chr7_1:46635510-46635529 None:intergenic 20.0%
!! TTATCATATTGAATGAATGA+TGG - chr7_1:46635510-46635529 Msa1021720:three_prime_UTR 20.0%
!! AAATAACGACAGAAATATTA+GGG - chr7_1:46636315-46636334 Msa1021720:CDS 20.0%
!! TGAAATTTAGAAATGGAAAA+AGG + chr7_1:46636409-46636428 None:intergenic 20.0%
!! ATAGTGATGAAATTTAGAAA+TGG + chr7_1:46636416-46636435 None:intergenic 20.0%
!!! CAAAATGCGATATTTTATTA+AGG - chr7_1:46636687-46636706 Msa1021720:intron 20.0%
!!! TGTTTTAAACATAAATGGAT+TGG + chr7_1:46636751-46636770 None:intergenic 20.0%
!! ACTTATGATATTGAAAAGTT+TGG + chr7_1:46637165-46637184 None:intergenic 20.0%
!!! TTCAATATGATAATGGTTGA+GGG + chr7_1:46635503-46635522 None:intergenic 25.0%
!!! ATTCAATATGATAATGGTTG+AGG + chr7_1:46635504-46635523 None:intergenic 25.0%
!!! TTTTTTTTCAAGGGTAGTTT+GGG + chr7_1:46635539-46635558 None:intergenic 25.0%
!!! TTTTTTTTTCAAGGGTAGTT+TGG + chr7_1:46635540-46635559 None:intergenic 25.0%
! TACCCTTGAAAAAAAAATTG+TGG - chr7_1:46635543-46635562 Msa1021720:three_prime_UTR 25.0%
!!! CTCCACAATTTTTTTTTCAA+GGG + chr7_1:46635548-46635567 None:intergenic 25.0%
! CTTCAGTTCATTAATGTTAT+CGG + chr7_1:46635806-46635825 None:intergenic 25.0%
! GATAACATTAATGAACTGAA+GGG - chr7_1:46635805-46635824 Msa1021720:CDS 25.0%
!!! TAGTGTATTGATAATGAATG+TGG - chr7_1:46636218-46636237 Msa1021720:CDS 25.0%
! GAAATAACGACAGAAATATT+AGG - chr7_1:46636314-46636333 Msa1021720:CDS 25.0%
!!! CAAGTTTTTGAGAAATATAC+TGG - chr7_1:46636481-46636500 Msa1021720:intron 25.0%
!! CGATATTTTATTAAGGTAAG+AGG - chr7_1:46636694-46636713 Msa1021720:intron 25.0%
!! ACAGTAATGATCATGTATTT+TGG + chr7_1:46637231-46637250 None:intergenic 25.0%
! TTACCAGAAGACAATTATTA+TGG + chr7_1:46637483-46637502 None:intergenic 25.0%
! ATAATAATTGTCTTCTGGTA+AGG - chr7_1:46637482-46637501 Msa1021720:CDS 25.0%
!!! TTTGAAGTTTTGGTTTAAGT+TGG - chr7_1:46637537-46637556 Msa1021720:CDS 25.0%
!!! TTCAATATGATAATGGTTGA+GGG + chr7_1:46635503-46635522 None:intergenic 25.0%
!!! ATTCAATATGATAATGGTTG+AGG + chr7_1:46635504-46635523 None:intergenic 25.0%
!!! TTTTTTTTCAAGGGTAGTTT+GGG + chr7_1:46635539-46635558 None:intergenic 25.0%
!!! TTTTTTTTTCAAGGGTAGTT+TGG + chr7_1:46635540-46635559 None:intergenic 25.0%
! TACCCTTGAAAAAAAAATTG+TGG - chr7_1:46635543-46635562 Msa1021720:three_prime_UTR 25.0%
!!! CTCCACAATTTTTTTTTCAA+GGG + chr7_1:46635548-46635567 None:intergenic 25.0%
! CTTCAGTTCATTAATGTTAT+CGG + chr7_1:46635806-46635825 None:intergenic 25.0%
! GATAACATTAATGAACTGAA+GGG - chr7_1:46635805-46635824 Msa1021720:CDS 25.0%
!!! TAGTGTATTGATAATGAATG+TGG - chr7_1:46636218-46636237 Msa1021720:CDS 25.0%
! GAAATAACGACAGAAATATT+AGG - chr7_1:46636314-46636333 Msa1021720:CDS 25.0%
!!! CAAGTTTTTGAGAAATATAC+TGG - chr7_1:46636481-46636500 Msa1021720:intron 25.0%
!! CGATATTTTATTAAGGTAAG+AGG - chr7_1:46636694-46636713 Msa1021720:intron 25.0%
!! ACAGTAATGATCATGTATTT+TGG + chr7_1:46637231-46637250 None:intergenic 25.0%
! TTACCAGAAGACAATTATTA+TGG + chr7_1:46637483-46637502 None:intergenic 25.0%
! ATAATAATTGTCTTCTGGTA+AGG - chr7_1:46637482-46637501 Msa1021720:CDS 25.0%
!!! TTTGAAGTTTTGGTTTAAGT+TGG - chr7_1:46637537-46637556 Msa1021720:CDS 25.0%
!!! GCTCCACAATTTTTTTTTCA+AGG + chr7_1:46635549-46635568 None:intergenic 30.0%
!! TTTGTATTGTCATGATGGAT+AGG + chr7_1:46635691-46635710 None:intergenic 30.0%
TCAGATTTGTATTGTCATGA+TGG + chr7_1:46635696-46635715 None:intergenic 30.0%
CGATAACATTAATGAACTGA+AGG - chr7_1:46635804-46635823 Msa1021720:CDS 30.0%
ATGTTCTTTGCTACATATCT+TGG - chr7_1:46635924-46635943 Msa1021720:CDS 30.0%
! GAATATTAAGGTTGATCAAC+TGG - chr7_1:46635978-46635997 Msa1021720:CDS 30.0%
ACATTTGAGGAAATCTATCA+TGG + chr7_1:46636103-46636122 None:intergenic 30.0%
ATTTCCTCAAATGTCATCAT+TGG - chr7_1:46636109-46636128 Msa1021720:CDS 30.0%
TTTCCTCAAATGTCATCATT+GGG - chr7_1:46636110-46636129 Msa1021720:CDS 30.0%
!! TGTTCTTTTCCTTTTTTGTC+TGG + chr7_1:46636198-46636217 None:intergenic 30.0%
!! TGTCTTTAAAACTTAACGAC+AGG - chr7_1:46636366-46636385 Msa1021720:intron 30.0%
! AATACTAACTTGTGCACTAA+GGG + chr7_1:46636539-46636558 None:intergenic 30.0%
! AAATACTAACTTGTGCACTA+AGG + chr7_1:46636540-46636559 None:intergenic 30.0%
AGTTAGTATTTACAAAGTCG+AGG - chr7_1:46636549-46636568 Msa1021720:intron 30.0%
TGTGCATAATAGTGATTAGA+GGG - chr7_1:46636590-46636609 Msa1021720:intron 30.0%
!! ATCATTTTGACGTTTTCATC+TGG + chr7_1:46636822-46636841 None:intergenic 30.0%
ATACAAGATCTAAAAGCAGT+AGG - chr7_1:46636855-46636874 Msa1021720:CDS 30.0%
!! CAATATCATAAGTACTGACT+TGG - chr7_1:46637172-46637191 Msa1021720:CDS 30.0%
! CCAAAATATGTTTCTGTGTT+AGG + chr7_1:46637200-46637219 None:intergenic 30.0%
! CCTAACACAGAAACATATTT+TGG - chr7_1:46637197-46637216 Msa1021720:CDS 30.0%
ACTGTAATAGATGCAATACA+TGG - chr7_1:46637246-46637265 Msa1021720:CDS 30.0%
CTGAATGAAAGTAAGAACAA+GGG + chr7_1:46637342-46637361 None:intergenic 30.0%
TCTGAATGAAAGTAAGAACA+AGG + chr7_1:46637343-46637362 None:intergenic 30.0%
TTCTTACTTTCATTCAGACA+TGG - chr7_1:46637345-46637364 Msa1021720:CDS 30.0%
CAGAAGACAATTATTATGGT+CGG + chr7_1:46637479-46637498 None:intergenic 30.0%
!!! TGTGGTTTGTTTTGAAGTTT+TGG - chr7_1:46637527-46637546 Msa1021720:CDS 30.0%
!!! GCTCCACAATTTTTTTTTCA+AGG + chr7_1:46635549-46635568 None:intergenic 30.0%
!! TTTGTATTGTCATGATGGAT+AGG + chr7_1:46635691-46635710 None:intergenic 30.0%
TCAGATTTGTATTGTCATGA+TGG + chr7_1:46635696-46635715 None:intergenic 30.0%
CGATAACATTAATGAACTGA+AGG - chr7_1:46635804-46635823 Msa1021720:CDS 30.0%
ATGTTCTTTGCTACATATCT+TGG - chr7_1:46635924-46635943 Msa1021720:CDS 30.0%
! GAATATTAAGGTTGATCAAC+TGG - chr7_1:46635978-46635997 Msa1021720:CDS 30.0%
ACATTTGAGGAAATCTATCA+TGG + chr7_1:46636103-46636122 None:intergenic 30.0%
ATTTCCTCAAATGTCATCAT+TGG - chr7_1:46636109-46636128 Msa1021720:CDS 30.0%
TTTCCTCAAATGTCATCATT+GGG - chr7_1:46636110-46636129 Msa1021720:CDS 30.0%
!! TGTTCTTTTCCTTTTTTGTC+TGG + chr7_1:46636198-46636217 None:intergenic 30.0%
!! TGTCTTTAAAACTTAACGAC+AGG - chr7_1:46636366-46636385 Msa1021720:intron 30.0%
! AATACTAACTTGTGCACTAA+GGG + chr7_1:46636539-46636558 None:intergenic 30.0%
! AAATACTAACTTGTGCACTA+AGG + chr7_1:46636540-46636559 None:intergenic 30.0%
AGTTAGTATTTACAAAGTCG+AGG - chr7_1:46636549-46636568 Msa1021720:intron 30.0%
TGTGCATAATAGTGATTAGA+GGG - chr7_1:46636590-46636609 Msa1021720:intron 30.0%
!! ATCATTTTGACGTTTTCATC+TGG + chr7_1:46636822-46636841 None:intergenic 30.0%
ATACAAGATCTAAAAGCAGT+AGG - chr7_1:46636855-46636874 Msa1021720:CDS 30.0%
!! CAATATCATAAGTACTGACT+TGG - chr7_1:46637172-46637191 Msa1021720:CDS 30.0%
! CCAAAATATGTTTCTGTGTT+AGG + chr7_1:46637200-46637219 None:intergenic 30.0%
! CCTAACACAGAAACATATTT+TGG - chr7_1:46637197-46637216 Msa1021720:CDS 30.0%
ACTGTAATAGATGCAATACA+TGG - chr7_1:46637246-46637265 Msa1021720:CDS 30.0%
CTGAATGAAAGTAAGAACAA+GGG + chr7_1:46637342-46637361 None:intergenic 30.0%
TCTGAATGAAAGTAAGAACA+AGG + chr7_1:46637343-46637362 None:intergenic 30.0%
TTCTTACTTTCATTCAGACA+TGG - chr7_1:46637345-46637364 Msa1021720:CDS 30.0%
CAGAAGACAATTATTATGGT+CGG + chr7_1:46637479-46637498 None:intergenic 30.0%
!!! TGTGGTTTGTTTTGAAGTTT+TGG - chr7_1:46637527-46637546 Msa1021720:CDS 30.0%
! ATCTTTGGTCGTGTATTTTG+TGG + chr7_1:46635592-46635611 None:intergenic 35.0%
ATACACGACCAAAGATACAA+AGG - chr7_1:46635596-46635615 Msa1021720:three_prime_UTR 35.0%
TACACGACCAAAGATACAAA+GGG - chr7_1:46635597-46635616 Msa1021720:three_prime_UTR 35.0%
GACAATACAAATCTGAAGAC+AGG - chr7_1:46635700-46635719 Msa1021720:three_prime_UTR 35.0%
! AGAGAAGTACAAGCTTATGT+GGG - chr7_1:46635723-46635742 Msa1021720:exon 35.0%
TCAAAATACCTCGAGAATAC+AGG - chr7_1:46635748-46635767 Msa1021720:CDS 35.0%
! ATCTTTTTGTGTAGATCACG+TGG + chr7_1:46635781-46635800 None:intergenic 35.0%
CAATCAAGAGACTACCAATA+CGG - chr7_1:46636170-46636189 Msa1021720:CDS 35.0%
!!! TTTTTTGTCTGGAACCGTAT+TGG + chr7_1:46636187-46636206 None:intergenic 35.0%
AATACGGTTCCAGACAAAAA+AGG - chr7_1:46636186-46636205 Msa1021720:CDS 35.0%
TGAAGATCAAGAAGATGAGT+GGG + chr7_1:46636252-46636271 None:intergenic 35.0%
!! CGTTATTTCTACTGTACCTT+GGG + chr7_1:46636303-46636322 None:intergenic 35.0%
!! TCGTTATTTCTACTGTACCT+TGG + chr7_1:46636304-46636323 None:intergenic 35.0%
TCGAGGATAGTGATTAGATA+GGG - chr7_1:46636566-46636585 Msa1021720:intron 35.0%
GTGTGCATAATAGTGATTAG+AGG - chr7_1:46636589-46636608 Msa1021720:intron 35.0%
ACGAAGCTATCAAAGAGAAT+TGG - chr7_1:46636784-46636803 Msa1021720:intron 35.0%
ACGTCAAAATGATGACATAC+AGG - chr7_1:46636829-46636848 Msa1021720:CDS 35.0%
! TTGTTCTTTTGCAGCTTTCA+TGG - chr7_1:46637052-46637071 Msa1021720:CDS 35.0%
!! TGAAGGTACTGAGATCAAAA+GGG - chr7_1:46637102-46637121 Msa1021720:CDS 35.0%
CTAATAAAGGTGGTTCGTTA+TGG - chr7_1:46637388-46637407 Msa1021720:CDS 35.0%
CGACCATAATAATTGTCTTC+TGG - chr7_1:46637477-46637496 Msa1021720:CDS 35.0%
TCATAGTCAAGACTCAAGAA+GGG + chr7_1:46637568-46637587 None:intergenic 35.0%
! TCTGCATGTTTCTACATTGT+TGG - chr7_1:46637693-46637712 Msa1021720:five_prime_UTR 35.0%
! ATCTTTGGTCGTGTATTTTG+TGG + chr7_1:46635592-46635611 None:intergenic 35.0%
ATACACGACCAAAGATACAA+AGG - chr7_1:46635596-46635615 Msa1021720:three_prime_UTR 35.0%
TACACGACCAAAGATACAAA+GGG - chr7_1:46635597-46635616 Msa1021720:three_prime_UTR 35.0%
GACAATACAAATCTGAAGAC+AGG - chr7_1:46635700-46635719 Msa1021720:three_prime_UTR 35.0%
! AGAGAAGTACAAGCTTATGT+GGG - chr7_1:46635723-46635742 Msa1021720:exon 35.0%
TCAAAATACCTCGAGAATAC+AGG - chr7_1:46635748-46635767 Msa1021720:CDS 35.0%
! ATCTTTTTGTGTAGATCACG+TGG + chr7_1:46635781-46635800 None:intergenic 35.0%
CAATCAAGAGACTACCAATA+CGG - chr7_1:46636170-46636189 Msa1021720:CDS 35.0%
!!! TTTTTTGTCTGGAACCGTAT+TGG + chr7_1:46636187-46636206 None:intergenic 35.0%
AATACGGTTCCAGACAAAAA+AGG - chr7_1:46636186-46636205 Msa1021720:CDS 35.0%
TGAAGATCAAGAAGATGAGT+GGG + chr7_1:46636252-46636271 None:intergenic 35.0%
!! CGTTATTTCTACTGTACCTT+GGG + chr7_1:46636303-46636322 None:intergenic 35.0%
!! TCGTTATTTCTACTGTACCT+TGG + chr7_1:46636304-46636323 None:intergenic 35.0%
TCGAGGATAGTGATTAGATA+GGG - chr7_1:46636566-46636585 Msa1021720:intron 35.0%
GTGTGCATAATAGTGATTAG+AGG - chr7_1:46636589-46636608 Msa1021720:intron 35.0%
ACGAAGCTATCAAAGAGAAT+TGG - chr7_1:46636784-46636803 Msa1021720:intron 35.0%
ACGTCAAAATGATGACATAC+AGG - chr7_1:46636829-46636848 Msa1021720:CDS 35.0%
! TTGTTCTTTTGCAGCTTTCA+TGG - chr7_1:46637052-46637071 Msa1021720:CDS 35.0%
!! TGAAGGTACTGAGATCAAAA+GGG - chr7_1:46637102-46637121 Msa1021720:CDS 35.0%
CTAATAAAGGTGGTTCGTTA+TGG - chr7_1:46637388-46637407 Msa1021720:CDS 35.0%
CGACCATAATAATTGTCTTC+TGG - chr7_1:46637477-46637496 Msa1021720:CDS 35.0%
TCATAGTCAAGACTCAAGAA+GGG + chr7_1:46637568-46637587 None:intergenic 35.0%
TCACCCAAGTTAGTGTCAAT+AGG - chr7_1:46635664-46635683 Msa1021720:three_prime_UTR 40.0%
GGACCTATTGACACTAACTT+GGG + chr7_1:46635670-46635689 None:intergenic 40.0%
AGGACCTATTGACACTAACT+TGG + chr7_1:46635671-46635690 None:intergenic 40.0%
! GAGAGAAGTACAAGCTTATG+TGG - chr7_1:46635722-46635741 Msa1021720:exon 40.0%
TTAACCAGCAACTCTCTTGA+AGG - chr7_1:46635853-46635872 Msa1021720:CDS 40.0%
! TCCACGACAACTTTTCTTCA+AGG + chr7_1:46635888-46635907 None:intergenic 40.0%
AAAGCCAAACTTGATGAACC+AGG - chr7_1:46635949-46635968 Msa1021720:CDS 40.0%
AAGCCAAACTTGATGAACCA+GGG - chr7_1:46635950-46635969 Msa1021720:CDS 40.0%
ACCAGGGCACATGAATATTA+AGG - chr7_1:46635966-46635985 Msa1021720:CDS 40.0%
ACCTTAATATTCATGTGCCC+TGG + chr7_1:46635970-46635989 None:intergenic 40.0%
! TCAACTGGTTCTTGTGATGA+TGG - chr7_1:46635993-46636012 Msa1021720:CDS 40.0%
!!! GATGATGGATGTGCTTTTGT+TGG - chr7_1:46636008-46636027 Msa1021720:CDS 40.0%
! AATAGCTGGAGTACTACGTA+AGG + chr7_1:46636045-46636064 None:intergenic 40.0%
GTTCCTCTTATTATCTGGTG+TGG + chr7_1:46636136-46636155 None:intergenic 40.0%
CACCAGATAATAAGAGGAAC+CGG - chr7_1:46636136-46636155 Msa1021720:CDS 40.0%
CTGAAGATCAAGAAGATGAG+TGG + chr7_1:46636253-46636272 None:intergenic 40.0%
GTCGAGGATAGTGATTAGAT+AGG - chr7_1:46636565-46636584 Msa1021720:intron 40.0%
CGAGGATAGTGATTAGATAG+GGG - chr7_1:46636567-46636586 Msa1021720:intron 40.0%
GACTTAAGTCAAGCAAGACA+CGG - chr7_1:46636883-46636902 Msa1021720:CDS 40.0%
TCGGAGAAATCAATGTCTCT+AGG + chr7_1:46636912-46636931 None:intergenic 40.0%
!! AGAGACATTGATTTCTCCGA+AGG - chr7_1:46636912-46636931 Msa1021720:CDS 40.0%
!! ACATTGATTTCTCCGAAGGA+TGG - chr7_1:46636916-46636935 Msa1021720:CDS 40.0%
!! AGGAAGAATTAGTTCTGCAG+CGG + chr7_1:46636943-46636962 None:intergenic 40.0%
AATTCTTCCTGAGATCGTTG+TGG - chr7_1:46636953-46636972 Msa1021720:CDS 40.0%
! TCTCATATGCTATCAGGTTG+AGG + chr7_1:46637001-46637020 None:intergenic 40.0%
GACACATCTCATATGCTATC+AGG + chr7_1:46637007-46637026 None:intergenic 40.0%
!! CCAGATTTTGAGAACGACTA+CGG - chr7_1:46637026-46637045 Msa1021720:CDS 40.0%
!! CAGATTTTGAGAACGACTAC+GGG - chr7_1:46637027-46637046 Msa1021720:CDS 40.0%
!! GTGAAGGTACTGAGATCAAA+AGG - chr7_1:46637101-46637120 Msa1021720:CDS 40.0%
! GGATTTTGCTCAATTCCCTT+GGG - chr7_1:46637123-46637142 Msa1021720:CDS 40.0%
ATGCAATACATGGATAGCAG+AGG - chr7_1:46637256-46637275 Msa1021720:CDS 40.0%
AGCAGCAATGAATGCAGTAA+TGG + chr7_1:46637312-46637331 None:intergenic 40.0%
!! TTAACCCGGCTTGCTAATAA+AGG - chr7_1:46637375-46637394 Msa1021720:CDS 40.0%
AACCACCTTTATTAGCAAGC+CGG + chr7_1:46637383-46637402 None:intergenic 40.0%
TAGTGTACTTCACTTCTCTG+TGG - chr7_1:46637509-46637528 Msa1021720:CDS 40.0%
CTCATAGTCAAGACTCAAGA+AGG + chr7_1:46637569-46637588 None:intergenic 40.0%
TCAAGCACACAACACAGAAA+AGG + chr7_1:46637612-46637631 None:intergenic 40.0%
TCACCCAAGTTAGTGTCAAT+AGG - chr7_1:46635664-46635683 Msa1021720:three_prime_UTR 40.0%
GGACCTATTGACACTAACTT+GGG + chr7_1:46635670-46635689 None:intergenic 40.0%
AGGACCTATTGACACTAACT+TGG + chr7_1:46635671-46635690 None:intergenic 40.0%
! GAGAGAAGTACAAGCTTATG+TGG - chr7_1:46635722-46635741 Msa1021720:exon 40.0%
TTAACCAGCAACTCTCTTGA+AGG - chr7_1:46635853-46635872 Msa1021720:CDS 40.0%
! TCCACGACAACTTTTCTTCA+AGG + chr7_1:46635888-46635907 None:intergenic 40.0%
AAAGCCAAACTTGATGAACC+AGG - chr7_1:46635949-46635968 Msa1021720:CDS 40.0%
AAGCCAAACTTGATGAACCA+GGG - chr7_1:46635950-46635969 Msa1021720:CDS 40.0%
ACCAGGGCACATGAATATTA+AGG - chr7_1:46635966-46635985 Msa1021720:CDS 40.0%
ACCTTAATATTCATGTGCCC+TGG + chr7_1:46635970-46635989 None:intergenic 40.0%
! TCAACTGGTTCTTGTGATGA+TGG - chr7_1:46635993-46636012 Msa1021720:CDS 40.0%
!!! GATGATGGATGTGCTTTTGT+TGG - chr7_1:46636008-46636027 Msa1021720:CDS 40.0%
! AATAGCTGGAGTACTACGTA+AGG + chr7_1:46636045-46636064 None:intergenic 40.0%
GTTCCTCTTATTATCTGGTG+TGG + chr7_1:46636136-46636155 None:intergenic 40.0%
CACCAGATAATAAGAGGAAC+CGG - chr7_1:46636136-46636155 Msa1021720:CDS 40.0%
CTGAAGATCAAGAAGATGAG+TGG + chr7_1:46636253-46636272 None:intergenic 40.0%
GTCGAGGATAGTGATTAGAT+AGG - chr7_1:46636565-46636584 Msa1021720:intron 40.0%
CGAGGATAGTGATTAGATAG+GGG - chr7_1:46636567-46636586 Msa1021720:intron 40.0%
GACTTAAGTCAAGCAAGACA+CGG - chr7_1:46636883-46636902 Msa1021720:CDS 40.0%
TCGGAGAAATCAATGTCTCT+AGG + chr7_1:46636912-46636931 None:intergenic 40.0%
!! AGAGACATTGATTTCTCCGA+AGG - chr7_1:46636912-46636931 Msa1021720:CDS 40.0%
!! ACATTGATTTCTCCGAAGGA+TGG - chr7_1:46636916-46636935 Msa1021720:CDS 40.0%
!! AGGAAGAATTAGTTCTGCAG+CGG + chr7_1:46636943-46636962 None:intergenic 40.0%
AATTCTTCCTGAGATCGTTG+TGG - chr7_1:46636953-46636972 Msa1021720:CDS 40.0%
! TCTCATATGCTATCAGGTTG+AGG + chr7_1:46637001-46637020 None:intergenic 40.0%
GACACATCTCATATGCTATC+AGG + chr7_1:46637007-46637026 None:intergenic 40.0%
!! CCAGATTTTGAGAACGACTA+CGG - chr7_1:46637026-46637045 Msa1021720:CDS 40.0%
!! CAGATTTTGAGAACGACTAC+GGG - chr7_1:46637027-46637046 Msa1021720:CDS 40.0%
!! GTGAAGGTACTGAGATCAAA+AGG - chr7_1:46637101-46637120 Msa1021720:CDS 40.0%
! GGATTTTGCTCAATTCCCTT+GGG - chr7_1:46637123-46637142 Msa1021720:CDS 40.0%
ATGCAATACATGGATAGCAG+AGG - chr7_1:46637256-46637275 Msa1021720:CDS 40.0%
AGCAGCAATGAATGCAGTAA+TGG + chr7_1:46637312-46637331 None:intergenic 40.0%
!! TTAACCCGGCTTGCTAATAA+AGG - chr7_1:46637375-46637394 Msa1021720:CDS 40.0%
AACCACCTTTATTAGCAAGC+CGG + chr7_1:46637383-46637402 None:intergenic 40.0%
TAGTGTACTTCACTTCTCTG+TGG - chr7_1:46637509-46637528 Msa1021720:CDS 40.0%
CTCATAGTCAAGACTCAAGA+AGG + chr7_1:46637569-46637588 None:intergenic 40.0%
TCAAGCACACAACACAGAAA+AGG + chr7_1:46637612-46637631 None:intergenic 40.0%
ACGACCAAAGATACAAAGGG+TGG - chr7_1:46635600-46635619 Msa1021720:three_prime_UTR 45.0%
TCTGCCACCCTTTGTATCTT+TGG + chr7_1:46635607-46635626 None:intergenic 45.0%
! TGTGTAGATCACGTGGATTG+CGG + chr7_1:46635774-46635793 None:intergenic 45.0%
AAAGCCTTCAAGAGAGTTGC+TGG + chr7_1:46635860-46635879 None:intergenic 45.0%
AGCAACTCTCTTGAAGGCTT+TGG - chr7_1:46635859-46635878 Msa1021720:CDS 45.0%
GCCTTGAAGAAAAGTTGTCG+TGG - chr7_1:46635884-46635903 Msa1021720:CDS 45.0%
ACGTAGTACTCCAGCTATTG+TGG - chr7_1:46636046-46636065 Msa1021720:CDS 45.0%
TGTCGTCTTTCCACAATAGC+TGG + chr7_1:46636059-46636078 None:intergenic 45.0%
TGGCCCAATGATGACATTTG+AGG + chr7_1:46636116-46636135 None:intergenic 45.0%
CAGATAATAAGAGGAACCGG+CGG - chr7_1:46636139-46636158 Msa1021720:CDS 45.0%
AGATAATAAGAGGAACCGGC+GGG - chr7_1:46636140-46636159 Msa1021720:CDS 45.0%
AAGAAGATGAGTGGGTGTCT+CGG + chr7_1:46636244-46636263 None:intergenic 45.0%
CCTTGGGTGTAGATGTAATG+AGG + chr7_1:46636287-46636306 None:intergenic 45.0%
CCTCATTACATCTACACCCA+AGG - chr7_1:46636284-46636303 Msa1021720:CDS 45.0%
TTAAGTCAAGCAAGACACGG+AGG - chr7_1:46636886-46636905 Msa1021720:CDS 45.0%
!! TATCAGGTTGAGGAAAGTGG+CGG + chr7_1:46636991-46637010 None:intergenic 45.0%
!! TGCTATCAGGTTGAGGAAAG+TGG + chr7_1:46636994-46637013 None:intergenic 45.0%
CCGTAGTCGTTCTCAAAATC+TGG + chr7_1:46637029-46637048 None:intergenic 45.0%
GTACCTTCACATCTTCAGGA+TGG + chr7_1:46637091-46637110 None:intergenic 45.0%
CTCAGTACCTTCACATCTTC+AGG + chr7_1:46637095-46637114 None:intergenic 45.0%
! GGGATTTTGCTCAATTCCCT+TGG - chr7_1:46637122-46637141 Msa1021720:CDS 45.0%
AACTTCCTCATCACTCCCAA+GGG + chr7_1:46637141-46637160 None:intergenic 45.0%
ACACTTACTTCAGCAGTCCT+TGG - chr7_1:46637285-46637304 Msa1021720:CDS 45.0%
CACTTACTTCAGCAGTCCTT+GGG - chr7_1:46637286-46637305 Msa1021720:CDS 45.0%
ATGAATGCAGTAATGGCCCA+AGG + chr7_1:46637305-46637324 None:intergenic 45.0%
! GACATGGTTTGCGATTAACC+CGG - chr7_1:46637361-46637380 Msa1021720:CDS 45.0%
ACCACCTTTATTAGCAAGCC+GGG + chr7_1:46637382-46637401 None:intergenic 45.0%
ACGACCAAAGATACAAAGGG+TGG - chr7_1:46635600-46635619 Msa1021720:three_prime_UTR 45.0%
TCTGCCACCCTTTGTATCTT+TGG + chr7_1:46635607-46635626 None:intergenic 45.0%
! TGTGTAGATCACGTGGATTG+CGG + chr7_1:46635774-46635793 None:intergenic 45.0%
AAAGCCTTCAAGAGAGTTGC+TGG + chr7_1:46635860-46635879 None:intergenic 45.0%
AGCAACTCTCTTGAAGGCTT+TGG - chr7_1:46635859-46635878 Msa1021720:CDS 45.0%
GCCTTGAAGAAAAGTTGTCG+TGG - chr7_1:46635884-46635903 Msa1021720:CDS 45.0%
ACGTAGTACTCCAGCTATTG+TGG - chr7_1:46636046-46636065 Msa1021720:CDS 45.0%
TGTCGTCTTTCCACAATAGC+TGG + chr7_1:46636059-46636078 None:intergenic 45.0%
TGGCCCAATGATGACATTTG+AGG + chr7_1:46636116-46636135 None:intergenic 45.0%
CAGATAATAAGAGGAACCGG+CGG - chr7_1:46636139-46636158 Msa1021720:CDS 45.0%
AGATAATAAGAGGAACCGGC+GGG - chr7_1:46636140-46636159 Msa1021720:CDS 45.0%
AAGAAGATGAGTGGGTGTCT+CGG + chr7_1:46636244-46636263 None:intergenic 45.0%
CCTTGGGTGTAGATGTAATG+AGG + chr7_1:46636287-46636306 None:intergenic 45.0%
CCTCATTACATCTACACCCA+AGG - chr7_1:46636284-46636303 Msa1021720:CDS 45.0%
TTAAGTCAAGCAAGACACGG+AGG - chr7_1:46636886-46636905 Msa1021720:CDS 45.0%
!! TATCAGGTTGAGGAAAGTGG+CGG + chr7_1:46636991-46637010 None:intergenic 45.0%
!! TGCTATCAGGTTGAGGAAAG+TGG + chr7_1:46636994-46637013 None:intergenic 45.0%
CCGTAGTCGTTCTCAAAATC+TGG + chr7_1:46637029-46637048 None:intergenic 45.0%
GTACCTTCACATCTTCAGGA+TGG + chr7_1:46637091-46637110 None:intergenic 45.0%
CTCAGTACCTTCACATCTTC+AGG + chr7_1:46637095-46637114 None:intergenic 45.0%
! GGGATTTTGCTCAATTCCCT+TGG - chr7_1:46637122-46637141 Msa1021720:CDS 45.0%
AACTTCCTCATCACTCCCAA+GGG + chr7_1:46637141-46637160 None:intergenic 45.0%
ACACTTACTTCAGCAGTCCT+TGG - chr7_1:46637285-46637304 Msa1021720:CDS 45.0%
CACTTACTTCAGCAGTCCTT+GGG - chr7_1:46637286-46637305 Msa1021720:CDS 45.0%
ATGAATGCAGTAATGGCCCA+AGG + chr7_1:46637305-46637324 None:intergenic 45.0%
! GACATGGTTTGCGATTAACC+CGG - chr7_1:46637361-46637380 Msa1021720:CDS 45.0%
ACCACCTTTATTAGCAAGCC+GGG + chr7_1:46637382-46637401 None:intergenic 45.0%
GTTGTCGTGGATGTTGTTCG+TGG - chr7_1:46635897-46635916 Msa1021720:CDS 50.0%
TCGTGGATGTTGTTCGTGGA+TGG - chr7_1:46635901-46635920 Msa1021720:CDS 50.0%
GTGCCCTGGTTCATCAAGTT+TGG + chr7_1:46635956-46635975 None:intergenic 50.0%
GGGCCACACCAGATAATAAG+AGG - chr7_1:46636130-46636149 Msa1021720:CDS 50.0%
!! CGCCGGTTCCTCTTATTATC+TGG + chr7_1:46636141-46636160 None:intergenic 50.0%
GATAATAAGAGGAACCGGCG+GGG - chr7_1:46636141-46636160 Msa1021720:CDS 50.0%
ATAATAAGAGGAACCGGCGG+GGG - chr7_1:46636142-46636161 Msa1021720:CDS 50.0%
CGACCATCCTGAAGATGTGA+AGG - chr7_1:46637085-46637104 Msa1021720:CDS 50.0%
CAATTCCCTTGGGAGTGATG+AGG - chr7_1:46637133-46637152 Msa1021720:CDS 50.0%
CAACTTCCTCATCACTCCCA+AGG + chr7_1:46637142-46637161 None:intergenic 50.0%
!! ACCCGGCTTGCTAATAAAGG+TGG - chr7_1:46637378-46637397 Msa1021720:CDS 50.0%
GTTGTCGTGGATGTTGTTCG+TGG - chr7_1:46635897-46635916 Msa1021720:CDS 50.0%
TCGTGGATGTTGTTCGTGGA+TGG - chr7_1:46635901-46635920 Msa1021720:CDS 50.0%
GTGCCCTGGTTCATCAAGTT+TGG + chr7_1:46635956-46635975 None:intergenic 50.0%
GGGCCACACCAGATAATAAG+AGG - chr7_1:46636130-46636149 Msa1021720:CDS 50.0%
!! CGCCGGTTCCTCTTATTATC+TGG + chr7_1:46636141-46636160 None:intergenic 50.0%
GATAATAAGAGGAACCGGCG+GGG - chr7_1:46636141-46636160 Msa1021720:CDS 50.0%
ATAATAAGAGGAACCGGCGG+GGG - chr7_1:46636142-46636161 Msa1021720:CDS 50.0%
CGACCATCCTGAAGATGTGA+AGG - chr7_1:46637085-46637104 Msa1021720:CDS 50.0%
CAATTCCCTTGGGAGTGATG+AGG - chr7_1:46637133-46637152 Msa1021720:CDS 50.0%
CAACTTCCTCATCACTCCCA+AGG + chr7_1:46637142-46637161 None:intergenic 50.0%
!! ACCCGGCTTGCTAATAAAGG+TGG - chr7_1:46637378-46637397 Msa1021720:CDS 50.0%
GATTGCGGCCTGTATTCTCG+AGG + chr7_1:46635759-46635778 None:intergenic 55.0%
TTCTGCAGCGGACCATCCTT+CGG + chr7_1:46636931-46636950 None:intergenic 55.0%
GTGTCGTCCACAACGATCTC+AGG + chr7_1:46636963-46636982 None:intergenic 55.0%
GATTGCGGCCTGTATTCTCG+AGG + chr7_1:46635759-46635778 None:intergenic 55.0%
TTCTGCAGCGGACCATCCTT+CGG + chr7_1:46636931-46636950 None:intergenic 55.0%
GTGTCGTCCACAACGATCTC+AGG + chr7_1:46636963-46636982 None:intergenic 55.0%
CTTGATTGCGTCGCCCCCGC+CGG + chr7_1:46636158-46636177 None:intergenic 70.0%
CTTGATTGCGTCGCCCCCGC+CGG + chr7_1:46636158-46636177 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 46635403 46637714 46635403 ID=Msa1021720;Name=Msa1021720
chr7_1 mRNA 46635403 46637714 46635403 ID=Msa1021720-mRNA-1;Parent=Msa1021720;Name=Msa1021720-mRNA-1;_AED=0.30;_eAED=0.30;_QI=123|1|1|1|1|1|2|323|465
chr7_1 exon 46635403 46636343 46635403 ID=Msa1021720-mRNA-1:exon:9184;Parent=Msa1021720-mRNA-1
chr7_1 exon 46636812 46637714 46636812 ID=Msa1021720-mRNA-1:exon:9183;Parent=Msa1021720-mRNA-1
chr7_1 five_prime_UTR 46637592 46637714 46637592 ID=Msa1021720-mRNA-1:five_prime_utr;Parent=Msa1021720-mRNA-1
chr7_1 CDS 46636812 46637591 46636812 ID=Msa1021720-mRNA-1:cds;Parent=Msa1021720-mRNA-1
chr7_1 CDS 46635726 46636343 46635726 ID=Msa1021720-mRNA-1:cds;Parent=Msa1021720-mRNA-1
chr7_1 three_prime_UTR 46635403 46635725 46635403 ID=Msa1021720-mRNA-1:three_prime_utr;Parent=Msa1021720-mRNA-1
Gene Sequence

>Msa1021720

ATGATGGCATCCCAAACTACCCTTGAAAAAAAAATTGTGGAGCTAGAAAATTCAAAGCAAATACCACAAAATACACGACCAAAGATACAAAGGGTGGCAGAATATCTCAGAAATAGAAAAAACTTTGAGAAGCATTACTCACCCAAGTTAGTGTCAATAGGTCCTATCCATCATGACAATACAAATCTGAAGACAGGAGAGAAGTACAAGCTTATGTGGGCATCAAAATACCTCGAGAATACAGGCCGCAATCCACGTGATCTACACAAAAAGATTGCCGATAACATTAATGAACTGAAGGGTCGTTTTAGCAATGATGTTTTAACTTTAACCAGCAACTCTCTTGAAGGCTTTGGTAGCCTTGAAGAAAAGTTGTCGTGGATGTTGTTCGTGGATGGATGTTCTTTGCTACATATCTTGGAGAAAGCCAAACTTGATGAACCAGGGCACATGAATATTAAGGTTGATCAACTGGTTCTTGTGATGATGGATGTGCTTTTGTTGGAGAATCAACTTCCTTACGTAGTACTCCAGCTATTGTGGAAAGACGACAACGAGAATGAATTGAAAAATACCATGATAGATTTCCTCAAATGTCATCATTGGGCCACACCAGATAATAAGAGGAACCGGCGGGGGCGACGCAATCAAGAGACTACCAATACGGTTCCAGACAAAAAAGGAAAAGAACATAGTGTATTGATAATGAATGTGGCCGAGACACCCACTCATCTTCTTGATCTTCAGCGTAATATCATCCTCATTACATCTACACCCAAGATTAAAAATGACGAAGCTATCAAAGAGAATTGGAGTAAGAAGAATCCAGATGAAAACGTCAAAATGATGACATACAGGAACATACAAGATCTAAAAGCAGTAGGAATAAGACTTAAGTCAAGCAAGACACGGAGGCCTAGAGACATTGATTTCTCCGAAGGATGGTCCGCTGCAGAACTAATTCTTCCTGAGATCGTTGTGGACGACACATCAGCCGCCACTTTCCTCAACCTGATAGCATATGAGATGTGTCCAGATTTTGAGAACGACTACGGGATTTGTTCTTTTGCAGCTTTCATGGACTCGCTTATCGACCATCCTGAAGATGTGAAGGTACTGAGATCAAAAGGGATTTTGCTCAATTCCCTTGGGAGTGATGAGGAAGTTGCCAAACTTTTCAATATCATAAGTACTGACTTGGTACCTAACACAGAAACATATTTTGGAGTTAGAGCCAAAATACATGATCATTACTGTAATAGATGCAATACATGGATAGCAGAGGCTTTACACACTTACTTCAGCAGTCCTTGGGCCATTACTGCATTCATTGCTGCTCTTATCGCCCTTGTTCTTACTTTCATTCAGACATGGTTTGCGATTAACCCGGCTTGCTAA
Protein sequence

>Msa1021720

MMASQTTLEKKIVELENSKQIPQNTRPKIQRVAEYLRNRKNFEKHYSPKLVSIGPIHHDNTNLKTGEKYKLMWASKYLENTGRNPRDLHKKIADNINELKGRFSNDVLTLTSNSLEGFGSLEEKLSWMLFVDGCSLLHILEKAKLDEPGHMNIKVDQLVLVMMDVLLLENQLPYVVLQLLWKDDNENELKNTMIDFLKCHHWATPDNKRNRRGRRNQETTNTVPDKKGKEHSVLIMNVAETPTHLLDLQRNIILITSTPKIKNDEAIKENWSKKNPDENVKMMTYRNIQDLKAVGIRLKSSKTRRPRDIDFSEGWSAAELILPEIVVDDTSAATFLNLIAYEMCPDFENDYGICSFAAFMDSLIDHPEDVKVLRSKGILLNSLGSDEEVAKLFNIISTDLVPNTETYFGVRAKIHDHYCNRCNTWIAEALHTYFSSPWAITAFIAALIALVLTFIQTWFAINPAC*