Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0155180 | XP_013466946.1 | 97.575 | 701 | 17 | 0 | 1 | 701 | 1 | 701 | 0.0 | 1432 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0155180 | sp|Q9SS87|SEOB_ARATH | 27.716 | 718 | 444 | 23 | 27 | 683 | 34 | 737 | 5.72e-66 | 234 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0155180 | E2FKJ2 | 97.575 | 701 | 17 | 0 | 1 | 701 | 1 | 701 | 0.0 | 1432 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003740 | Msa0155180 | 0.832209 | 1.077208e-55 | -8.615850e-47 |
| Msa0009780 | Msa0155180 | 0.891394 | 4.136792e-74 | -8.615850e-47 |
| Msa0015150 | Msa0155180 | 0.977886 | 1.097062e-144 | -8.615850e-47 |
| Msa0015570 | Msa0155180 | 0.810551 | 1.089854e-50 | -8.615850e-47 |
| Msa0017750 | Msa0155180 | 0.815966 | 7.050633e-52 | -8.615850e-47 |
| Msa0025160 | Msa0155180 | 0.811859 | 5.669722e-51 | -8.615850e-47 |
| Msa0029960 | Msa0155180 | 0.922160 | 1.410955e-88 | -8.615850e-47 |
| Msa0029970 | Msa0155180 | 0.861836 | 7.752954e-64 | -8.615850e-47 |
| Msa0029990 | Msa0155180 | 0.904838 | 8.069716e-80 | -8.615850e-47 |
| Msa0040640 | Msa0155180 | 0.805760 | 1.142734e-49 | -8.615850e-47 |
| Msa0043290 | Msa0155180 | 0.825764 | 3.922774e-54 | -8.615850e-47 |
| Msa0053000 | Msa0155180 | 0.807821 | 4.190900e-50 | -8.615850e-47 |
| Msa0061350 | Msa0155180 | 0.821939 | 3.091878e-53 | -8.615850e-47 |
| Msa0064120 | Msa0155180 | 0.960378 | 1.725830e-118 | -8.615850e-47 |
| Msa0069350 | Msa0155180 | 0.854746 | 1.002630e-61 | -8.615850e-47 |
| Msa0071840 | Msa0155180 | 0.909550 | 5.030440e-82 | -8.615850e-47 |
| Msa0071850 | Msa0155180 | 0.896873 | 2.428569e-76 | -8.615850e-47 |
| Msa0071860 | Msa0155180 | 0.875948 | 2.060271e-68 | -8.615850e-47 |
| Msa0072520 | Msa0155180 | 0.827622 | 1.412876e-54 | -8.615850e-47 |
| Msa0098050 | Msa0155180 | 0.828316 | 9.621815e-55 | -8.615850e-47 |
| Msa0104570 | Msa0155180 | 0.836835 | 7.412715e-57 | -8.615850e-47 |
| Msa0108880 | Msa0155180 | 0.934314 | 4.890932e-96 | -8.615850e-47 |
| Msa0125200 | Msa0155180 | 0.878792 | 2.107239e-69 | -8.615850e-47 |
| Msa0125210 | Msa0155180 | 0.871717 | 5.522554e-67 | -8.615850e-47 |
| Msa0125220 | Msa0155180 | 0.835767 | 1.384884e-56 | -8.615850e-47 |
| Msa0132700 | Msa0155180 | 0.811982 | 5.332124e-51 | -8.615850e-47 |
| Msa0146650 | Msa0155180 | 0.804631 | 1.968979e-49 | -8.615850e-47 |
| Msa0155180 | Msa0156050 | 0.821719 | 3.476799e-53 | -8.615850e-47 |
| Msa0155180 | Msa0156090 | 0.815296 | 9.942813e-52 | -8.615850e-47 |
| Msa0155180 | Msa0159590 | 0.809794 | 1.586344e-50 | -8.615850e-47 |
| Msa0155180 | Msa0161930 | 0.823370 | 1.437074e-53 | -8.615850e-47 |
| Msa0155180 | Msa0170070 | 0.808334 | 3.259922e-50 | -8.615850e-47 |
| Msa0155180 | Msa0177140 | 0.809902 | 1.504112e-50 | -8.615850e-47 |
| Msa0155180 | Msa0181880 | 0.815882 | 7.363428e-52 | -8.615850e-47 |
| Msa0155180 | Msa0182400 | 0.839460 | 1.564011e-57 | -8.615850e-47 |
| Msa0155180 | Msa0195440 | 0.804918 | 1.714926e-49 | -8.615850e-47 |
| Msa0155180 | Msa0205570 | 0.805647 | 1.206656e-49 | -8.615850e-47 |
| Msa0155180 | Msa0230870 | 0.827107 | 1.878020e-54 | -8.615850e-47 |
| Msa0155180 | Msa0237240 | 0.811618 | 6.398907e-51 | -8.615850e-47 |
| Msa0155180 | Msa0268100 | 0.816972 | 4.198452e-52 | -8.615850e-47 |
| Msa0155180 | Msa0359010 | 0.862736 | 4.103681e-64 | -8.615850e-47 |
| Msa0155180 | Msa0382530 | 0.905767 | 3.031521e-80 | -8.615850e-47 |
| Msa0155180 | Msa0418970 | 0.854183 | 1.458132e-61 | -8.615850e-47 |
| Msa0155180 | Msa0420430 | 0.806657 | 7.395254e-50 | -8.615850e-47 |
| Msa0155180 | Msa0420680 | 0.828040 | 1.121365e-54 | -8.615850e-47 |
| Msa0155180 | Msa0424490 | 0.816501 | 5.352501e-52 | -8.615850e-47 |
| Msa0155180 | Msa0427820 | 0.833209 | 6.083022e-56 | -8.615850e-47 |
| Msa0155180 | Msa0432320 | 0.896129 | 4.959056e-76 | -8.615850e-47 |
| Msa0155180 | Msa0433760 | 0.833122 | 6.393242e-56 | -8.615850e-47 |
| Msa0155180 | Msa0451170 | 0.868310 | 7.180345e-66 | -8.615850e-47 |
| Msa0155180 | Msa0460550 | 0.887449 | 1.413351e-72 | -8.615850e-47 |
| Msa0155180 | Msa0460630 | 0.816970 | 4.202791e-52 | -8.615850e-47 |
| Msa0155180 | Msa0466520 | 0.834112 | 3.617754e-56 | -8.615850e-47 |
| Msa0155180 | Msa0471460 | 0.823831 | 1.120577e-53 | -8.615850e-47 |
| Msa0155180 | Msa0471540 | 0.819331 | 1.228257e-52 | -8.615850e-47 |
| Msa0155180 | Msa0474060 | 0.828652 | 7.981719e-55 | -8.615850e-47 |
| Msa0155180 | Msa0477630 | 0.829564 | 4.796290e-55 | -8.615850e-47 |
| Msa0155180 | Msa0482080 | 0.844327 | 8.098207e-59 | -8.615850e-47 |
| Msa0155180 | Msa0498610 | 0.869731 | 2.485637e-66 | -8.615850e-47 |
| Msa0155180 | Msa0512520 | 0.818673 | 1.733859e-52 | -8.615850e-47 |
| Msa0155180 | Msa0513080 | 0.821292 | 4.363858e-53 | -8.615850e-47 |
| Msa0155180 | Msa0514020 | 0.800386 | 1.476505e-48 | -8.615850e-47 |
| Msa0155180 | Msa0518680 | 0.824235 | 9.009633e-54 | -8.615850e-47 |
| Msa0155180 | Msa0520870 | 0.801212 | 1.001786e-48 | -8.615850e-47 |
| Msa0155180 | Msa0521680 | 0.831723 | 1.420282e-55 | -8.615850e-47 |
| Msa0155180 | Msa0524040 | 0.801726 | 7.858436e-49 | -8.615850e-47 |
| Msa0155180 | Msa0525210 | 0.907830 | 3.313719e-81 | -8.615850e-47 |
| Msa0155180 | Msa0526010 | 0.864722 | 9.911350e-65 | -8.615850e-47 |
| Msa0155180 | Msa0530390 | 0.833983 | 3.898455e-56 | -8.615850e-47 |
| Msa0155180 | Msa0541740 | 0.842066 | 3.244408e-58 | -8.615850e-47 |
| Msa0155180 | Msa0554300 | 0.828259 | 9.927404e-55 | -8.615850e-47 |
| Msa0155180 | Msa0557850 | 0.805657 | 1.200745e-49 | -8.615850e-47 |
| Msa0155180 | Msa0561560 | 0.804854 | 1.769108e-49 | -8.615850e-47 |
| Msa0155180 | Msa0562560 | 0.806241 | 9.049029e-50 | -8.615850e-47 |
| Msa0155180 | Msa0562620 | 0.801397 | 9.178603e-49 | -8.615850e-47 |
| Msa0155180 | Msa0564980 | 0.823715 | 1.193252e-53 | -8.615850e-47 |
| Msa0155180 | Msa0570010 | 0.803039 | 4.217177e-49 | -8.615850e-47 |
| Msa0155180 | Msa0579780 | 0.858601 | 7.365396e-63 | -8.615850e-47 |
| Msa0155180 | Msa0587300 | 0.805355 | 1.389255e-49 | -8.615850e-47 |
| Msa0155180 | Msa0588920 | 0.822853 | 1.896858e-53 | -8.615850e-47 |
| Msa0155180 | Msa0608350 | 0.804657 | 1.944821e-49 | -8.615850e-47 |
| Msa0155180 | Msa0609300 | 0.891991 | 2.394241e-74 | -8.615850e-47 |
| Msa0155180 | Msa0612520 | 0.816722 | 4.777445e-52 | -8.615850e-47 |
| Msa0155180 | Msa0615630 | 0.809351 | 1.974824e-50 | -8.615850e-47 |
| Msa0155180 | Msa0621710 | 0.801690 | 7.995177e-49 | -8.615850e-47 |
| Msa0155180 | Msa0622110 | 0.863913 | 1.772032e-64 | -8.615850e-47 |
| Msa0155180 | Msa0627090 | 0.824619 | 7.316239e-54 | -8.615850e-47 |
| Msa0155180 | Msa0648760 | 0.819129 | 1.365643e-52 | -8.615850e-47 |
| Msa0155180 | Msa0649840 | 0.857942 | 1.157399e-62 | -8.615850e-47 |
| Msa0155180 | Msa0653160 | 0.808396 | 3.161754e-50 | -8.615850e-47 |
| Msa0155180 | Msa0655910 | 0.817315 | 3.515221e-52 | -8.615850e-47 |
| Msa0155180 | Msa0657210 | 0.844805 | 6.021532e-59 | -8.615850e-47 |
| Msa0155180 | Msa0665160 | 0.832652 | 8.366976e-56 | -8.615850e-47 |
| Msa0155180 | Msa0691270 | 0.817247 | 3.640129e-52 | -8.615850e-47 |
| Msa0155180 | Msa0691910 | 0.890140 | 1.289574e-73 | -8.615850e-47 |
| Msa0155180 | Msa0695560 | 0.834706 | 2.566679e-56 | -8.615850e-47 |
| Msa0155180 | Msa0699540 | 0.800429 | 1.446976e-48 | -8.615850e-47 |
| Msa0155180 | Msa0701250 | 0.841879 | 3.634686e-58 | -8.615850e-47 |
| Msa0155180 | Msa0701720 | 0.810327 | 1.217773e-50 | -8.615850e-47 |
| Msa0155180 | Msa0706150 | 0.810543 | 1.093777e-50 | -8.615850e-47 |
| Msa0155180 | Msa0717900 | 0.801867 | 7.352818e-49 | -8.615850e-47 |
| Msa0155180 | Msa0736440 | 0.810213 | 1.288702e-50 | -8.615850e-47 |
| Msa0155180 | Msa0738700 | 0.824900 | 6.283349e-54 | -8.615850e-47 |
| Msa0155180 | Msa0740090 | 0.891991 | 2.393648e-74 | -8.615850e-47 |
| Msa0155180 | Msa0759010 | 0.812926 | 3.315709e-51 | -8.615850e-47 |
| Msa0155180 | Msa0780910 | 0.804368 | 2.234282e-49 | -8.615850e-47 |
| Msa0155180 | Msa0782750 | 0.855784 | 5.001174e-62 | -8.615850e-47 |
| Msa0155180 | Msa0800140 | 0.824390 | 8.285495e-54 | -8.615850e-47 |
| Msa0155180 | Msa0800170 | 0.815816 | 7.617292e-52 | -8.615850e-47 |
| Msa0155180 | Msa0800200 | 0.832109 | 1.140297e-55 | -8.615850e-47 |
| Msa0155180 | Msa0820380 | 0.877707 | 5.061767e-69 | -8.615850e-47 |
| Msa0155180 | Msa0823170 | 0.805439 | 1.334236e-49 | -8.615850e-47 |
| Msa0155180 | Msa0849650 | 0.852756 | 3.745042e-61 | -8.615850e-47 |
| Msa0155180 | Msa0859290 | 0.807996 | 3.846933e-50 | -8.615850e-47 |
| Msa0155180 | Msa0862170 | 0.802410 | 5.684592e-49 | -8.615850e-47 |
| Msa0155180 | Msa0931590 | 0.808701 | 2.721085e-50 | -8.615850e-47 |
| Msa0155180 | Msa1000970 | 0.810362 | 1.196906e-50 | -8.615850e-47 |
| Msa0155180 | Msa1014320 | 0.908931 | 9.964475e-82 | -8.615850e-47 |
| Msa0155180 | Msa1021720 | 0.805769 | 1.137825e-49 | -8.615850e-47 |
| Msa0155180 | Msa1021780 | 0.838098 | 3.517606e-57 | -8.615850e-47 |
| Msa0155180 | Msa1023330 | 0.810615 | 1.055577e-50 | -8.615850e-47 |
| Msa0155180 | Msa1039680 | 0.832765 | 7.841544e-56 | -8.615850e-47 |
| Msa0155180 | Msa1055310 | 0.899038 | 2.942766e-77 | -8.615850e-47 |
| Msa0155180 | Msa1078880 | 0.819589 | 1.072911e-52 | -8.615850e-47 |
| Msa0155180 | Msa1105720 | 0.804514 | 2.082814e-49 | -8.615850e-47 |
| Msa0155180 | Msa1131150 | 0.831689 | 1.447805e-55 | -8.615850e-47 |
| Msa0155180 | Msa1169190 | 0.816832 | 4.513591e-52 | -8.615850e-47 |
| Msa0155180 | Msa1187760 | 0.843787 | 1.130100e-58 | -8.615850e-47 |
| Msa0155180 | Msa1188170 | 0.851139 | 1.078241e-60 | -8.615850e-47 |
| Msa0155180 | Msa1209320 | 0.859503 | 3.953861e-63 | -8.615850e-47 |
| Msa0155180 | Msa1209720 | 0.853111 | 2.966104e-61 | -8.615850e-47 |
| Msa0155180 | Msa1211640 | 0.815782 | 7.749842e-52 | -8.615850e-47 |
| Msa0155180 | Msa1211910 | 0.852673 | 3.957200e-61 | -8.615850e-47 |
| Msa0155180 | Msa1216580 | 0.803446 | 3.473174e-49 | -8.615850e-47 |
| Msa0155180 | Msa1219770 | 0.803619 | 3.197978e-49 | -8.615850e-47 |
| Msa0155180 | Msa1219820 | 0.814081 | 1.847802e-51 | -8.615850e-47 |
| Msa0155180 | Msa1228630 | 0.816975 | 4.191675e-52 | -8.615850e-47 |
| Msa0155180 | Msa1241970 | 0.832457 | 9.353321e-56 | -8.615850e-47 |
| Msa0155180 | Msa1254540 | 0.818152 | 2.275185e-52 | -8.615850e-47 |
| Msa0155180 | Msa1257340 | 0.818554 | 1.845256e-52 | -8.615850e-47 |
| Msa0155180 | Msa1262860 | 0.843880 | 1.067266e-58 | -8.615850e-47 |
| Msa0155180 | Msa1263740 | 0.819941 | 8.912977e-53 | -8.615850e-47 |
| Msa0155180 | Msa1263780 | 0.827938 | 1.186735e-54 | -8.615850e-47 |
| Msa0155180 | Msa1267050 | 0.847387 | 1.194525e-59 | -8.615850e-47 |
| Msa0155180 | Msa1267180 | 0.846139 | 2.620020e-59 | -8.615850e-47 |
| Msa0155180 | Msa1267930 | 0.842133 | 3.114970e-58 | -8.615850e-47 |
| Msa0155180 | Msa1268380 | 0.828791 | 7.385877e-55 | -8.615850e-47 |
| Msa0155180 | Msa1268410 | 0.817829 | 2.692051e-52 | -8.615850e-47 |
| Msa0155180 | Msa1268440 | 0.806395 | 8.400359e-50 | -8.615850e-47 |
| Msa0155180 | Msa1283730 | 0.813767 | 2.166534e-51 | -8.615850e-47 |
| Msa0155180 | Msa1290380 | 0.819636 | 1.046461e-52 | -8.615850e-47 |
| Msa0155180 | Msa1290440 | 0.812868 | 3.414646e-51 | -8.615850e-47 |
| Msa0155180 | Msa1294460 | 0.813999 | 1.926068e-51 | -8.615850e-47 |
| Msa0155180 | Msa1294790 | 0.802711 | 4.927663e-49 | -8.615850e-47 |
| Msa0155180 | Msa1298650 | 0.800200 | 1.611497e-48 | -8.615850e-47 |
| Msa0155180 | Msa1304950 | 0.858462 | 8.103115e-63 | -8.615850e-47 |
| Msa0155180 | Msa1356220 | 0.844234 | 8.577288e-59 | -8.615850e-47 |
| Msa0155180 | Msa1356350 | 0.849861 | 2.463158e-60 | -8.615850e-47 |
| Msa0155180 | Msa1360930 | 0.861095 | 1.304840e-63 | -8.615850e-47 |
| Msa0155180 | Msa1367840 | 0.857534 | 1.528711e-62 | -8.615850e-47 |
| Msa0155180 | Msa1369010 | 0.827372 | 1.622559e-54 | -8.615850e-47 |
| Msa0155180 | Msa1380120 | 0.812933 | 3.304343e-51 | -8.615850e-47 |
| Msa0155180 | Msa1381470 | 0.830952 | 2.197900e-55 | -8.615850e-47 |
| Msa0155180 | Msa1382580 | 0.830841 | 2.339708e-55 | -8.615850e-47 |
| Msa0155180 | Msa1387500 | 0.803027 | 4.240015e-49 | -8.615850e-47 |
| Msa0155180 | Msa1400010 | 0.806483 | 8.047825e-50 | -8.615850e-47 |
| Msa0155180 | Msa1401520 | 0.837784 | 4.238292e-57 | -8.615850e-47 |
| Msa0155180 | Msa1404480 | 0.834282 | 3.279802e-56 | -8.615850e-47 |
| Msa0155180 | Msa1406720 | 0.837202 | 5.973807e-57 | -8.615850e-47 |
| Msa0155180 | Msa1409410 | 0.803475 | 3.424847e-49 | -8.615850e-47 |
| Msa0155180 | Msa1429860 | 0.902518 | 8.932372e-79 | -8.615850e-47 |
| Msa0155180 | Msa1435630 | 0.906560 | 1.302928e-80 | -8.615850e-47 |
| Msa0155180 | Msa1438610 | 0.809768 | 1.607050e-50 | -8.615850e-47 |
| Msa0155180 | Msa1457840 | 0.833885 | 4.125123e-56 | -8.615850e-47 |
| Msa0155180 | Msa1462560 | 0.853677 | 2.040100e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0155180 | MtrunA17_Chr1g0165791 | 97.575 | 701 | 17 | 0 | 1 | 701 | 1 | 701 | 0.0 | 1432 |
| Msa0155180 | MtrunA17_Chr1g0187001 | 46.852 | 683 | 310 | 15 | 16 | 687 | 2 | 642 | 0.0 | 586 |
| Msa0155180 | MtrunA17_Chr1g0186981 | 42.544 | 684 | 356 | 9 | 2 | 677 | 8 | 662 | 0.0 | 548 |
| Msa0155180 | MtrunA17_Chr1g0186991 | 42.522 | 682 | 357 | 13 | 5 | 677 | 11 | 666 | 1.17e-171 | 507 |
| Msa0155180 | MtrunA17_Chr1g0186841 | 37.668 | 669 | 392 | 11 | 24 | 685 | 20 | 670 | 3.18e-150 | 452 |
| Msa0155180 | MtrunA17_Chr1g0186851 | 36.132 | 667 | 402 | 10 | 25 | 685 | 20 | 668 | 2.42e-149 | 449 |
| Msa0155180 | MtrunA17_Chr1g0187041 | 35.693 | 664 | 397 | 11 | 24 | 677 | 19 | 662 | 3.74e-142 | 431 |
| Msa0155180 | MtrunA17_Chr1g0186861 | 35.045 | 662 | 404 | 11 | 25 | 678 | 20 | 663 | 1.68e-139 | 424 |
| Msa0155180 | MtrunA17_Chr1g0186911 | 35.060 | 579 | 352 | 10 | 106 | 678 | 1 | 561 | 1.63e-119 | 369 |
| Msa0155180 | MtrunA17_Chr7g0226571 | 30.186 | 699 | 423 | 23 | 30 | 677 | 26 | 710 | 5.26e-87 | 288 |
| Msa0155180 | MtrunA17_Chr8g0381301 | 29.037 | 706 | 421 | 25 | 30 | 677 | 20 | 703 | 1.54e-75 | 257 |
| Msa0155180 | MtrunA17_Chr3g0116601 | 28.177 | 724 | 449 | 23 | 3 | 676 | 2 | 704 | 1.07e-71 | 246 |
| Msa0155180 | MtrunA17_Chr8g0364451 | 47.126 | 87 | 40 | 3 | 106 | 190 | 48 | 130 | 7.31e-14 | 70.1 |
| Msa0155180 | MtrunA17_Chr1g0186901 | 34.653 | 101 | 61 | 2 | 25 | 123 | 20 | 117 | 1.93e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0155180 | AT3G01680.1 | 27.716 | 718 | 444 | 23 | 27 | 683 | 34 | 737 | 5.82e-67 | 234 |
| Msa0155180 | AT3G01670.1 | 25.369 | 745 | 452 | 26 | 4 | 676 | 108 | 820 | 5.68e-50 | 187 |
| Msa0155180 | AT3G01670.2 | 25.202 | 742 | 457 | 24 | 4 | 676 | 132 | 844 | 1.42e-49 | 187 |
| Msa0155180 | AT1G67790.1 | 24.319 | 514 | 345 | 15 | 28 | 517 | 9 | 502 | 6.35e-28 | 120 |
Find 149 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGAATCGTTCCTCGTTTC+TGG | 0.066845 | 1_4:+20384765 | Msa0155180:CDS |
| GTGTTTGTTTGGTTGGTTTC+TGG | 0.101255 | 1_4:+20385257 | Msa0155180:three_prime_UTR |
| CTCAAAAGTGGAATTGGTTT+TGG | 0.154712 | 1_4:+20384431 | Msa0155180:CDS |
| TTCCATTGTAAGCAAATTAA+AGG | 0.155216 | 1_4:+20383294 | Msa0155180:CDS |
| CATTAGAATATGGAAATTTC+TGG | 0.161510 | 1_4:+20382709 | Msa0155180:CDS |
| GCAAAGTCATGTGTCCATTT+TGG | 0.177728 | 1_4:-20384656 | None:intergenic |
| CATGTGTTGGTATTCATTTC+AGG | 0.222644 | 1_4:+20384034 | Msa0155180:CDS |
| GAGAGATATAATAACTTTCT+TGG | 0.228493 | 1_4:+20381660 | Msa0155180:five_prime_UTR |
| AGATTCCTGTTGCTGTTTAT+TGG | 0.243721 | 1_4:+20382949 | Msa0155180:CDS |
| AAATCATATGCATTGCATTA+TGG | 0.255922 | 1_4:-20384354 | None:intergenic |
| CAGAAATATGCTTCAGTTTA+CGG | 0.256894 | 1_4:-20382070 | None:intergenic |
| TCTATCCCTTGGCTGGAATA+AGG | 0.257305 | 1_4:+20384257 | Msa0155180:CDS |
| GAAGACAGACTTCCCTTATC+TGG | 0.274120 | 1_4:+20382032 | Msa0155180:CDS |
| AAAGTTATTATATCTCTCTT+TGG | 0.281682 | 1_4:-20381655 | None:intergenic |
| AGTCTTCCACAATGAAATTC+AGG | 0.283440 | 1_4:+20383592 | Msa0155180:CDS |
| GATTCCTGTTGCTGTTTATT+GGG | 0.286090 | 1_4:+20382950 | Msa0155180:CDS |
| GTGAATGTGAATCAGATTAA+AGG | 0.295865 | 1_4:+20384599 | Msa0155180:intron |
| ATCTCTCTTTGGAGCTACTA+TGG | 0.297473 | 1_4:-20381644 | None:intergenic |
| CACTTACTCAAAAGTGGAAT+TGG | 0.308731 | 1_4:+20384425 | Msa0155180:CDS |
| ATGGAGGAACAGACCCAAAA+TGG | 0.329313 | 1_4:+20384642 | Msa0155180:CDS |
| TTTGAATCAGGACAGTAAAT+AGG | 0.340556 | 1_4:-20385109 | None:intergenic |
| GACACATTCATCTTCATATA+TGG | 0.340751 | 1_4:+20384623 | Msa0155180:CDS |
| CAGGTGAGCTAGAAGATTAC+TGG | 0.342565 | 1_4:+20383513 | Msa0155180:intron |
| GTTCTTCCACAGTTTGAATC+AGG | 0.348453 | 1_4:-20385121 | None:intergenic |
| AGGTTAGCATCGAAGTGTTT+AGG | 0.358989 | 1_4:+20384005 | Msa0155180:intron |
| TTATCATCACTCCATGCTAA+TGG | 0.362851 | 1_4:-20381764 | None:intergenic |
| GGAATCATTTGTTGAATGTT+CGG | 0.363847 | 1_4:+20385278 | Msa0155180:three_prime_UTR |
| CAAATTCAGCTTTGTGAAGT+AGG | 0.370216 | 1_4:-20384192 | None:intergenic |
| GAAGAACCAAGAGAACTAAA+AGG | 0.372963 | 1_4:+20384115 | Msa0155180:CDS |
| TGAATGTGAATCAGATTAAA+GGG | 0.375570 | 1_4:+20384600 | Msa0155180:intron |
| TCTTGATGTGTTTGTTTGGT+TGG | 0.379201 | 1_4:+20385250 | Msa0155180:exon |
| TCATCGTCTGTGGGACGAAA+AGG | 0.392262 | 1_4:-20384400 | None:intergenic |
| TTGGAAAAGCTTTCAACAAA+AGG | 0.397341 | 1_4:+20382882 | Msa0155180:CDS |
| TATCATCACTCCATGCTAAT+GGG | 0.399622 | 1_4:-20381763 | None:intergenic |
| AGGGTCCAATCATCCACAAT+TGG | 0.400463 | 1_4:-20384172 | None:intergenic |
| CATTGCTGATTACAACAGTT+TGG | 0.400657 | 1_4:+20382821 | Msa0155180:CDS |
| CGACCGAGCAGTTTCACATT+TGG | 0.403560 | 1_4:-20384914 | None:intergenic |
| CTTACAAGGTCTTGGAGTCT+TGG | 0.407678 | 1_4:-20384475 | None:intergenic |
| TTCTTGTAGTCCAGCGTAGA+TGG | 0.412320 | 1_4:-20384095 | None:intergenic |
| AATTTGTACTTACAAGGTCT+TGG | 0.416127 | 1_4:-20384483 | None:intergenic |
| CACCGGTGTGGACATGAGTT+AGG | 0.420531 | 1_4:-20381805 | None:intergenic |
| ATCGTTCCTCGTTTCTGGAT+TGG | 0.420969 | 1_4:+20384770 | Msa0155180:CDS |
| AAAACCTCAACAATTTCTGT+TGG | 0.423007 | 1_4:-20383560 | None:intergenic |
| GGGTTCAGAACAGGTAGAAT+TGG | 0.427233 | 1_4:-20384313 | None:intergenic |
| AAGGTCTTGATGTGTTTGTT+TGG | 0.438101 | 1_4:+20385246 | Msa0155180:exon |
| CACCACTTGGTGTTTGAACT+AGG | 0.444045 | 1_4:-20382734 | None:intergenic |
| AAGATTACTGGAGGCGTAAG+AGG | 0.445082 | 1_4:+20383525 | Msa0155180:CDS |
| ATAGCCCAATAAACAGCAAC+AGG | 0.445960 | 1_4:-20382954 | None:intergenic |
| GGATCCCAATTGTGGATGAT+TGG | 0.449147 | 1_4:+20384167 | Msa0155180:CDS |
| GAGTACTTCTATCCCTTGGC+TGG | 0.451475 | 1_4:+20384250 | Msa0155180:CDS |
| TGCATATTAGCACAAGCAAC+AGG | 0.456296 | 1_4:-20385055 | None:intergenic |
| TAGATGATGAGCACACTTCC+TGG | 0.460640 | 1_4:+20382591 | Msa0155180:intron |
| GCCTAACATGTCGTCTTCAA+TGG | 0.463271 | 1_4:+20381682 | Msa0155180:exon |
| ATGAATCACTTACTCAAAAG+TGG | 0.467148 | 1_4:+20384419 | Msa0155180:CDS |
| CGCTGATAGTGTTGCATCCA+AGG | 0.468545 | 1_4:+20381892 | Msa0155180:CDS |
| TATTTAAAACAACCCATTCA+AGG | 0.472814 | 1_4:-20385401 | None:intergenic |
| AGCCTTTAATTTGCTTACAA+TGG | 0.473426 | 1_4:-20383296 | None:intergenic |
| CTACCTAGAGGGTTCAGAAC+AGG | 0.476347 | 1_4:-20384322 | None:intergenic |
| CTGTCTTCTACAAGACCTAC+AGG | 0.477249 | 1_4:-20382017 | None:intergenic |
| AAATTCAGCTTTGTGAAGTA+GGG | 0.482259 | 1_4:-20384191 | None:intergenic |
| AGGAGGCTCATAACCAGATA+AGG | 0.484803 | 1_4:-20382045 | None:intergenic |
| TGATGGCTTGAACAGACAAA+TGG | 0.485289 | 1_4:+20383628 | Msa0155180:CDS |
| CAAACAAGACCAGCCAGGTT+GGG | 0.490006 | 1_4:+20384874 | Msa0155180:CDS |
| TCTCGTCTCTTATGCTGTCT+AGG | 0.493672 | 1_4:-20384057 | None:intergenic |
| AAGAAGATTTCAAGATCTTG+TGG | 0.495575 | 1_4:+20384146 | Msa0155180:CDS |
| ATCAGCTGAAATCCCATACA+TGG | 0.498650 | 1_4:+20382652 | Msa0155180:CDS |
| ACATTACTTGCAAGTGAAGC+TGG | 0.499453 | 1_4:-20381707 | None:intergenic |
| ACAAGGAGCAGAAAGCATAT+AGG | 0.503383 | 1_4:+20383325 | Msa0155180:CDS |
| CCCATTCAAGGGCACACAAA+AGG | 0.505411 | 1_4:-20385389 | None:intergenic |
| GCCATTGAAGACGACATGTT+AGG | 0.506056 | 1_4:-20381683 | None:intergenic |
| AATTAAAGGCTCATCTTACA+AGG | 0.509783 | 1_4:+20383308 | Msa0155180:CDS |
| GGGTCCAATCATCCACAATT+GGG | 0.510095 | 1_4:-20384171 | None:intergenic |
| ATTTAAAACAACCCATTCAA+GGG | 0.515381 | 1_4:-20385400 | None:intergenic |
| GGAGGCTCATAACCAGATAA+GGG | 0.525657 | 1_4:-20382044 | None:intergenic |
| ACACCAAGTGGTGACTCACT+TGG | 0.527054 | 1_4:+20382744 | Msa0155180:CDS |
| CATCGTCTGTGGGACGAAAA+GGG | 0.528204 | 1_4:-20384399 | None:intergenic |
| GGTTGAGTACTTCTATCCCT+TGG | 0.529205 | 1_4:+20384246 | Msa0155180:CDS |
| CTACCTGTTCTGAACCCTCT+AGG | 0.529548 | 1_4:+20384319 | Msa0155180:CDS |
| ACTGAAGCATATTTCTGCCC+AGG | 0.531572 | 1_4:+20382076 | Msa0155180:CDS |
| CTGAAATCCCATACATGGGA+TGG | 0.532648 | 1_4:+20382657 | Msa0155180:CDS |
| ACAAAACCACCACTCTCAGC+AGG | 0.533265 | 1_4:-20385211 | None:intergenic |
| TATCAACCTTATTCCAGCCA+AGG | 0.535936 | 1_4:-20384263 | None:intergenic |
| TGCTTGTGCTAATATGCAGT+TGG | 0.535959 | 1_4:+20385060 | Msa0155180:CDS |
| ATGTGAGCATGGTGCTCACC+AGG | 0.537625 | 1_4:-20382609 | None:intergenic |
| GAGTTAGGTAAACGGTTTCG+AGG | 0.540103 | 1_4:-20381790 | None:intergenic |
| TTCCACATCGTACCTTTCAC+CGG | 0.543184 | 1_4:-20381822 | None:intergenic |
| TGGCAGACTGGGACTCCTGT+AGG | 0.544529 | 1_4:+20382002 | Msa0155180:intron |
| TTCAAGCCATCAAAGACAAG+GGG | 0.551538 | 1_4:-20383617 | None:intergenic |
| GTAATAGAGCATTTCCACTT+CGG | 0.551983 | 1_4:+20384731 | Msa0155180:CDS |
| TTAGTAGAACCCAACCTGGC+TGG | 0.552075 | 1_4:-20384883 | None:intergenic |
| TGCATAGCTTCAGACAAAGC+AGG | 0.554275 | 1_4:-20382924 | None:intergenic |
| AGTAAGTGATTCATCGTCTG+TGG | 0.554795 | 1_4:-20384410 | None:intergenic |
| TGTCTCAAACAAGACCAGCC+AGG | 0.555894 | 1_4:+20384869 | Msa0155180:CDS |
| GTGGACATGAGTTAGGTAAA+CGG | 0.556772 | 1_4:-20381798 | None:intergenic |
| CTTCCAAGTGAGTCACCACT+TGG | 0.558326 | 1_4:-20382747 | None:intergenic |
| TGTTGAGTGTATTACTGAGT+TGG | 0.559184 | 1_4:+20382863 | Msa0155180:CDS |
| ATCAACCTTATTCCAGCCAA+GGG | 0.563390 | 1_4:-20384262 | None:intergenic |
| TCAGTTTATGTGTCAACAGA+TGG | 0.565418 | 1_4:+20385358 | Msa0155180:three_prime_UTR |
| AACACTATCAGCGACTGCAC+TGG | 0.566260 | 1_4:-20381882 | None:intergenic |
| CTCATGTCCACACCGGTGAA+AGG | 0.569357 | 1_4:+20381810 | Msa0155180:CDS |
| TAGCAATCGAGAAAATCAAA+AGG | 0.570446 | 1_4:+20384681 | Msa0155180:CDS |
| TCAAACAAGACCAGCCAGGT+TGG | 0.571127 | 1_4:+20384873 | Msa0155180:CDS |
| GTTAGCTACAAGTGTTGCCA+TGG | 0.571157 | 1_4:+20385160 | Msa0155180:CDS |
| TGCTTCAGTTTACGGATAGG+AGG | 0.575601 | 1_4:-20382062 | None:intergenic |
| AACTCCAACAGAAATTGTTG+AGG | 0.575818 | 1_4:+20383556 | Msa0155180:CDS |
| GTTTAGGAGGAAGCATGTGT+TGG | 0.578541 | 1_4:+20384021 | Msa0155180:CDS |
| CAGTTTATGTGTCAACAGAT+GGG | 0.581262 | 1_4:+20385359 | Msa0155180:three_prime_UTR |
| AGATTACTGGAGGCGTAAGA+GGG | 0.582113 | 1_4:+20383526 | Msa0155180:CDS |
| ATATGCTTCAGTTTACGGAT+AGG | 0.583335 | 1_4:-20382065 | None:intergenic |
| AAACTTCAAACCCATTAGCA+TGG | 0.583737 | 1_4:+20381753 | Msa0155180:CDS |
| GCTCCTCCTGCTGAGAGTGG+TGG | 0.584351 | 1_4:+20385205 | Msa0155180:CDS |
| AATGTGAAACTGCTCGGTCG+CGG | 0.586302 | 1_4:+20384917 | Msa0155180:CDS |
| ATAGGATCAAGAATATCAGA+AGG | 0.591889 | 1_4:-20385091 | None:intergenic |
| GATCTTGTGGATCCCAATTG+TGG | 0.592782 | 1_4:+20384159 | Msa0155180:CDS |
| TACTGTCCTGATTCAAACTG+TGG | 0.599493 | 1_4:+20385115 | Msa0155180:CDS |
| CTTCTTCAATCCATCTACGC+TGG | 0.599801 | 1_4:+20384085 | Msa0155180:CDS |
| TTAGCATCGAAGTGTTTAGG+AGG | 0.599845 | 1_4:+20384008 | Msa0155180:CDS |
| TTCAAACTGTGGAAGAACAA+TGG | 0.600916 | 1_4:+20385126 | Msa0155180:CDS |
| GCTAGAAATGCCATGGTATG+TGG | 0.603153 | 1_4:+20384225 | Msa0155180:CDS |
| GGACCAAATGTGAAACTGCT+CGG | 0.603872 | 1_4:+20384911 | Msa0155180:CDS |
| GGTTCACAATCCTACCTAGA+GGG | 0.606256 | 1_4:-20384333 | None:intergenic |
| CTGTTCTGAACCCTCTAGGT+AGG | 0.607740 | 1_4:+20384323 | Msa0155180:CDS |
| GTCTGTGGGACGAAAAGGGA+AGG | 0.608345 | 1_4:-20384395 | None:intergenic |
| CAAACTGTTGTAATCAGCAA+TGG | 0.608903 | 1_4:-20382820 | None:intergenic |
| ACTTGAAGCTAGAAATGCCA+TGG | 0.609318 | 1_4:+20384218 | Msa0155180:CDS |
| ACATTGTTGTCATGTGAGCA+TGG | 0.611775 | 1_4:-20382620 | None:intergenic |
| GTGTCAGCTTATAGCCAACA+AGG | 0.616261 | 1_4:+20381728 | Msa0155180:CDS |
| TGTTCAAGCCATCAAAGACA+AGG | 0.620643 | 1_4:-20383619 | None:intergenic |
| TTGCTTAGTAGAACCCAACC+TGG | 0.620916 | 1_4:-20384887 | None:intergenic |
| GAAGCTCCTCCTGCTGAGAG+TGG | 0.621719 | 1_4:+20385202 | Msa0155180:CDS |
| ACATTCATCTTCATATATGG+AGG | 0.630288 | 1_4:+20384626 | Msa0155180:CDS |
| TAGGATCAAGAATATCAGAA+GGG | 0.639927 | 1_4:-20385090 | None:intergenic |
| GTAAGTGATTCATCGTCTGT+GGG | 0.641479 | 1_4:-20384409 | None:intergenic |
| CATCGTACCTTTCACCGGTG+TGG | 0.641644 | 1_4:-20381817 | None:intergenic |
| GTTCAAGCCATCAAAGACAA+GGG | 0.644512 | 1_4:-20383618 | None:intergenic |
| CGTTCTCGTGAGTATGACCA+TGG | 0.648414 | 1_4:-20385177 | None:intergenic |
| GGTTGGGTTCTACTAAGCAA+AGG | 0.652919 | 1_4:+20384890 | Msa0155180:CDS |
| AAGTACTCAACCACATACCA+TGG | 0.655414 | 1_4:-20384235 | None:intergenic |
| CACCGGTGAAAGGTACGATG+TGG | 0.656165 | 1_4:+20381820 | Msa0155180:CDS |
| CACCTAGTTCAAACACCAAG+TGG | 0.658165 | 1_4:+20382732 | Msa0155180:CDS |
| TGGTTCACAATCCTACCTAG+AGG | 0.663403 | 1_4:-20384334 | None:intergenic |
| AAACCACCACTCTCAGCAGG+AGG | 0.667205 | 1_4:-20385208 | None:intergenic |
| GAATGTGAATCAGATTAAAG+GGG | 0.672367 | 1_4:+20384601 | Msa0155180:intron |
| TACCTAACTCATGTCCACAC+CGG | 0.681654 | 1_4:+20381803 | Msa0155180:CDS |
| TCAGCTGAAATCCCATACAT+GGG | 0.682027 | 1_4:+20382653 | Msa0155180:CDS |
| GTGAGCTAGAAGATTACTGG+AGG | 0.704760 | 1_4:+20383516 | Msa0155180:CDS |
| TCAAATGTATGCAACTGCTG+TGG | 0.727594 | 1_4:+20384943 | Msa0155180:CDS |
| TCTATGCCAATCCAGAAACG+AGG | 0.741708 | 1_4:-20384776 | None:intergenic |
| TCAAGCCATCAAAGACAAGG+GGG | 0.746571 | 1_4:-20383616 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATAATTAATGATATTAG+TGG | + | chr1_4:20383131-20383150 | Msa0155180:intron | 10.0% |
| !! | CATTAATTCACAATTATATT+TGG | - | chr1_4:20381958-20381977 | None:intergenic | 15.0% |
| !! | AAAATATTGTATCATTTGTT+TGG | + | chr1_4:20381982-20382001 | Msa0155180:intron | 15.0% |
| !! | AATTGATATAAAAATTACCT+GGG | - | chr1_4:20382096-20382115 | None:intergenic | 15.0% |
| !! | AAATTGATATAAAAATTACC+TGG | - | chr1_4:20382097-20382116 | None:intergenic | 15.0% |
| !! | ATAAAATAAAATGTACATGT+TGG | - | chr1_4:20382208-20382227 | None:intergenic | 15.0% |
| !! | TAAAAGGAACATATTATTAT+GGG | + | chr1_4:20382455-20382474 | Msa0155180:intron | 15.0% |
| !!! | TGAATTTTTAATGCATTATT+TGG | + | chr1_4:20383415-20383434 | Msa0155180:intron | 15.0% |
| !! | TATCATTAATAGTTATCATT+AGG | - | chr1_4:20383698-20383717 | None:intergenic | 15.0% |
| !! | TATTTAGTGACAAAATATAT+TGG | - | chr1_4:20383858-20383877 | None:intergenic | 15.0% |
| !!! | ATTAATACTATTTTTGCTAA+AGG | + | chr1_4:20384514-20384533 | Msa0155180:intron | 15.0% |
| !!! | TTAATACTATTTTTGCTAAA+GGG | + | chr1_4:20384515-20384534 | Msa0155180:intron | 15.0% |
| !! | AAAGTTATTATATCTCTCTT+TGG | - | chr1_4:20381658-20381677 | None:intergenic | 20.0% |
| !! | TAAAATTCAGATCATTGTAT+AGG | + | chr1_4:20382135-20382154 | Msa0155180:intron | 20.0% |
| !! | GCAAAAATGTATATGTATTT+AGG | - | chr1_4:20382295-20382314 | None:intergenic | 20.0% |
| !! | TGCTTATATATTTATTCTAG+AGG | + | chr1_4:20382312-20382331 | Msa0155180:intron | 20.0% |
| !! | CTAAAAGGAACATATTATTA+TGG | + | chr1_4:20382454-20382473 | Msa0155180:intron | 20.0% |
| !!! | TCTTTATTTGCTTTTTTTAG+TGG | + | chr1_4:20383379-20383398 | Msa0155180:intron | 20.0% |
| !!! | CTTTATTTGCTTTTTTTAGT+GGG | + | chr1_4:20383380-20383399 | Msa0155180:intron | 20.0% |
| !! | TTATAAAGCATACAACATTA+TGG | + | chr1_4:20383901-20383920 | Msa0155180:intron | 20.0% |
| !! | AAATGATTTCACAAAGTAAA+CGG | - | chr1_4:20383928-20383947 | None:intergenic | 20.0% |
| !!! | AATGCATATGATTTTTGTTT+GGG | + | chr1_4:20384363-20384382 | Msa0155180:CDS | 20.0% |
| !!! | CTTTTCAATGAATATTTGTT+TGG | + | chr1_4:20384561-20384580 | Msa0155180:intron | 20.0% |
| ! | GAGAGATATAATAACTTTCT+TGG | + | chr1_4:20381660-20381679 | Msa0155180:five_prime_UTR | 25.0% |
| ! | GTAATCTATGAGAAACTAAA+AGG | + | chr1_4:20382439-20382458 | Msa0155180:intron | 25.0% |
| ! | CATTAGAATATGGAAATTTC+TGG | + | chr1_4:20382709-20382728 | Msa0155180:CDS | 25.0% |
| !! | AATCATCTTGATCTTCTTTT+TGG | + | chr1_4:20382999-20383018 | Msa0155180:CDS | 25.0% |
| !!! | TGTTTTCATGAACTTTTTTC+AGG | + | chr1_4:20383230-20383249 | Msa0155180:intron | 25.0% |
| !!! | GTTTTCATGAACTTTTTTCA+GGG | + | chr1_4:20383231-20383250 | Msa0155180:intron | 25.0% |
| ! | TTCCATTGTAAGCAAATTAA+AGG | + | chr1_4:20383294-20383313 | Msa0155180:CDS | 25.0% |
| ! | GCACACACATAAATTATAAT+CGG | - | chr1_4:20383487-20383506 | None:intergenic | 25.0% |
| !! | GGTTAGTTAATATTCAAATG+TGG | + | chr1_4:20383649-20383668 | Msa0155180:intron | 25.0% |
| ! | TTGAAAATCAGTAGCAAAAT+CGG | + | chr1_4:20383820-20383839 | Msa0155180:intron | 25.0% |
| ! | AAATCATATGCATTGCATTA+TGG | - | chr1_4:20384357-20384376 | None:intergenic | 25.0% |
| !! | CAATGCATATGATTTTTGTT+TGG | + | chr1_4:20384362-20384381 | Msa0155180:CDS | 25.0% |
| !!! | ATGCATATGATTTTTGTTTG+GGG | + | chr1_4:20384364-20384383 | Msa0155180:CDS | 25.0% |
| ! | TTGCAAAATTTGTACTTACA+AGG | - | chr1_4:20384492-20384511 | None:intergenic | 25.0% |
| ! | TGAATGTGAATCAGATTAAA+GGG | + | chr1_4:20384600-20384619 | Msa0155180:intron | 25.0% |
| !!! | TGTTTTGTTGTTGTTTTTGT+TGG | + | chr1_4:20385323-20385342 | Msa0155180:three_prime_UTR | 25.0% |
| !! | ATTTAAAACAACCCATTCAA+GGG | - | chr1_4:20385403-20385422 | None:intergenic | 25.0% |
| !! | TATTTAAAACAACCCATTCA+AGG | - | chr1_4:20385404-20385423 | None:intergenic | 25.0% |
| !!! | GAATGGGTTGTTTTAAATAA+TGG | + | chr1_4:20385405-20385424 | Msa0155180:three_prime_UTR | 25.0% |
| CAGAAATATGCTTCAGTTTA+CGG | - | chr1_4:20382073-20382092 | None:intergenic | 30.0% | |
| CCAAATACATGTATACAAGT+TGG | - | chr1_4:20382262-20382281 | None:intergenic | 30.0% | |
| CCAACTTGTATACATGTATT+TGG | + | chr1_4:20382259-20382278 | Msa0155180:intron | 30.0% | |
| TTCTCATAGATTACTTCCAA+CGG | - | chr1_4:20382433-20382452 | None:intergenic | 30.0% | |
| ! | GCTGCATTTTCATTAGAATA+TGG | + | chr1_4:20382699-20382718 | Msa0155180:CDS | 30.0% |
| TTGGAAAAGCTTTCAACAAA+AGG | + | chr1_4:20382882-20382901 | Msa0155180:CDS | 30.0% | |
| AGTTACGAAAAGATATTCCA+AGG | - | chr1_4:20383046-20383065 | None:intergenic | 30.0% | |
| AATGATATTAGTGGTCAAAG+TGG | + | chr1_4:20383140-20383159 | Msa0155180:intron | 30.0% | |
| ! | TGGTGTATTGACATATAGTA+AGG | + | chr1_4:20383160-20383179 | Msa0155180:intron | 30.0% |
| !! | GGTTAATGTGTCGATTAATA+TGG | + | chr1_4:20383181-20383200 | Msa0155180:intron | 30.0% |
| ACACTCTCATGAATATTACT+CGG | - | chr1_4:20383213-20383232 | None:intergenic | 30.0% | |
| !! | AGCCTTTAATTTGCTTACAA+TGG | - | chr1_4:20383299-20383318 | None:intergenic | 30.0% |
| AATTAAAGGCTCATCTTACA+AGG | + | chr1_4:20383308-20383327 | Msa0155180:CDS | 30.0% | |
| AAAACCTCAACAATTTCTGT+TGG | - | chr1_4:20383563-20383582 | None:intergenic | 30.0% | |
| !! | AGAAATTGTTGAGGTTTTGA+AGG | + | chr1_4:20383565-20383584 | Msa0155180:CDS | 30.0% |
| AAGAAGATTTCAAGATCTTG+TGG | + | chr1_4:20384146-20384165 | Msa0155180:CDS | 30.0% | |
| ! | AAATTCAGCTTTGTGAAGTA+GGG | - | chr1_4:20384194-20384213 | None:intergenic | 30.0% |
| ATGAATCACTTACTCAAAAG+TGG | + | chr1_4:20384419-20384438 | Msa0155180:CDS | 30.0% | |
| !!! | TCAAAAGTGGAATTGGTTTT+GGG | + | chr1_4:20384432-20384451 | Msa0155180:CDS | 30.0% |
| AATTTGTACTTACAAGGTCT+TGG | - | chr1_4:20384486-20384505 | None:intergenic | 30.0% | |
| GTGAATGTGAATCAGATTAA+AGG | + | chr1_4:20384599-20384618 | Msa0155180:intron | 30.0% | |
| GAATGTGAATCAGATTAAAG+GGG | + | chr1_4:20384601-20384620 | Msa0155180:intron | 30.0% | |
| GACACATTCATCTTCATATA+TGG | + | chr1_4:20384623-20384642 | Msa0155180:CDS | 30.0% | |
| ACATTCATCTTCATATATGG+AGG | + | chr1_4:20384626-20384645 | Msa0155180:CDS | 30.0% | |
| TAGCAATCGAGAAAATCAAA+AGG | + | chr1_4:20384681-20384700 | Msa0155180:CDS | 30.0% | |
| !!! | CTTTTGATTTCATCGATTGT+TGG | - | chr1_4:20384842-20384861 | None:intergenic | 30.0% |
| !!! | TGGTTTTGATGTTGCTTTTA+AGG | + | chr1_4:20385003-20385022 | Msa0155180:CDS | 30.0% |
| !!! | CTTTTAAGGAGTATTATGAG+AGG | + | chr1_4:20385017-20385036 | Msa0155180:CDS | 30.0% |
| TAGGATCAAGAATATCAGAA+GGG | - | chr1_4:20385093-20385112 | None:intergenic | 30.0% | |
| ATAGGATCAAGAATATCAGA+AGG | - | chr1_4:20385094-20385113 | None:intergenic | 30.0% | |
| TTTGAATCAGGACAGTAAAT+AGG | - | chr1_4:20385112-20385131 | None:intergenic | 30.0% | |
| !! | GTTTTGTTCAGATTGAGAAA+AGG | + | chr1_4:20385227-20385246 | Msa0155180:CDS | 30.0% |
| ! | GGAATCATTTGTTGAATGTT+CGG | + | chr1_4:20385278-20385297 | Msa0155180:three_prime_UTR | 30.0% |
| !! | GGTTTGAAGTTTTTCCTTGT+TGG | - | chr1_4:20381745-20381764 | None:intergenic | 35.0% |
| AAACTTCAAACCCATTAGCA+TGG | + | chr1_4:20381753-20381772 | Msa0155180:CDS | 35.0% | |
| TATCATCACTCCATGCTAAT+GGG | - | chr1_4:20381766-20381785 | None:intergenic | 35.0% | |
| TTATCATCACTCCATGCTAA+TGG | - | chr1_4:20381767-20381786 | None:intergenic | 35.0% | |
| GTTGTGAGAAATGTATACCT+TGG | - | chr1_4:20381912-20381931 | None:intergenic | 35.0% | |
| TATCATTTGTTTGGCAGACT+GGG | + | chr1_4:20381991-20382010 | Msa0155180:intron | 35.0% | |
| ATATGCTTCAGTTTACGGAT+AGG | - | chr1_4:20382068-20382087 | None:intergenic | 35.0% | |
| TCTAACCAAGACTTGAATCT+CGG | + | chr1_4:20382357-20382376 | Msa0155180:intron | 35.0% | |
| ! | TCTTTTCGACACTTTGAACA+CGG | - | chr1_4:20382791-20382810 | None:intergenic | 35.0% |
| CAAACTGTTGTAATCAGCAA+TGG | - | chr1_4:20382823-20382842 | None:intergenic | 35.0% | |
| ! | CATTGCTGATTACAACAGTT+TGG | + | chr1_4:20382821-20382840 | Msa0155180:CDS | 35.0% |
| TGTTGAGTGTATTACTGAGT+TGG | + | chr1_4:20382863-20382882 | Msa0155180:CDS | 35.0% | |
| !! | AGATTCCTGTTGCTGTTTAT+TGG | + | chr1_4:20382949-20382968 | Msa0155180:CDS | 35.0% |
| !! | GATTCCTGTTGCTGTTTATT+GGG | + | chr1_4:20382950-20382969 | Msa0155180:CDS | 35.0% |
| TCGTAAGTACTTTGATTCCT+TGG | + | chr1_4:20383026-20383045 | Msa0155180:intron | 35.0% | |
| !!! | GAACTTTTTTCAGGGATGAT+AGG | + | chr1_4:20383239-20383258 | Msa0155180:intron | 35.0% |
| TTTATGTGTGTGCATATTGC+AGG | + | chr1_4:20383494-20383513 | Msa0155180:intron | 35.0% | |
| AACTCCAACAGAAATTGTTG+AGG | + | chr1_4:20383556-20383575 | Msa0155180:CDS | 35.0% | |
| AGTCTTCCACAATGAAATTC+AGG | + | chr1_4:20383592-20383611 | Msa0155180:CDS | 35.0% | |
| ATTGTTAGCGACCAATATAG+CGG | - | chr1_4:20383733-20383752 | None:intergenic | 35.0% | |
| ATTAACGCGGAAATTAGAGA+CGG | - | chr1_4:20383980-20383999 | None:intergenic | 35.0% | |
| AATTTCCGCGTTAATTCAAC+AGG | + | chr1_4:20383985-20384004 | Msa0155180:intron | 35.0% | |
| ! | CATGTGTTGGTATTCATTTC+AGG | + | chr1_4:20384034-20384053 | Msa0155180:CDS | 35.0% |
| GAAGAACCAAGAGAACTAAA+AGG | + | chr1_4:20384115-20384134 | Msa0155180:CDS | 35.0% | |
| !!! | CTGTATCCTTTTAGTTCTCT+TGG | - | chr1_4:20384124-20384143 | None:intergenic | 35.0% |
| ! | CAAATTCAGCTTTGTGAAGT+AGG | - | chr1_4:20384195-20384214 | None:intergenic | 35.0% |
| CACTTACTCAAAAGTGGAAT+TGG | + | chr1_4:20384425-20384444 | Msa0155180:CDS | 35.0% | |
| !! | CTCAAAAGTGGAATTGGTTT+TGG | + | chr1_4:20384431-20384450 | Msa0155180:CDS | 35.0% |
| ! | CAAAGTCATGTGTCCATTTT+GGG | - | chr1_4:20384658-20384677 | None:intergenic | 35.0% |
| ! | TATTACTGCATCAGCTTTTC+GGG | - | chr1_4:20384717-20384736 | None:intergenic | 35.0% |
| ! | CTATTACTGCATCAGCTTTT+CGG | - | chr1_4:20384718-20384737 | None:intergenic | 35.0% |
| ! | GTAATAGAGCATTTCCACTT+CGG | + | chr1_4:20384731-20384750 | Msa0155180:CDS | 35.0% |
| ! | TTTTGTCTTCTTTTCCGAAG+TGG | - | chr1_4:20384748-20384767 | None:intergenic | 35.0% |
| TTCAAACTGTGGAAGAACAA+TGG | + | chr1_4:20385126-20385145 | Msa0155180:CDS | 35.0% | |
| AAGGTCTTGATGTGTTTGTT+TGG | + | chr1_4:20385246-20385265 | Msa0155180:exon | 35.0% | |
| TCTTGATGTGTTTGTTTGGT+TGG | + | chr1_4:20385250-20385269 | Msa0155180:exon | 35.0% | |
| TCAGTTTATGTGTCAACAGA+TGG | + | chr1_4:20385358-20385377 | Msa0155180:three_prime_UTR | 35.0% | |
| CAGTTTATGTGTCAACAGAT+GGG | + | chr1_4:20385359-20385378 | Msa0155180:three_prime_UTR | 35.0% | |
| !! | ATCTCTCTTTGGAGCTACTA+TGG | - | chr1_4:20381647-20381666 | None:intergenic | 40.0% |
| ACATTACTTGCAAGTGAAGC+TGG | - | chr1_4:20381710-20381729 | None:intergenic | 40.0% | |
| GTGGACATGAGTTAGGTAAA+CGG | - | chr1_4:20381801-20381820 | None:intergenic | 40.0% | |
| GTATCATTTGTTTGGCAGAC+TGG | + | chr1_4:20381990-20382009 | Msa0155180:intron | 40.0% | |
| TTTAGCCGAGATTCAAGTCT+TGG | - | chr1_4:20382365-20382384 | None:intergenic | 40.0% | |
| AGACTTGAATCTCGGCTAAA+AGG | + | chr1_4:20382365-20382384 | Msa0155180:intron | 40.0% | |
| TGCAATAAGATTACCTCCGT+TGG | + | chr1_4:20382414-20382433 | Msa0155180:intron | 40.0% | |
| TCATAGATTACTTCCAACGG+AGG | - | chr1_4:20382430-20382449 | None:intergenic | 40.0% | |
| ACATTGTTGTCATGTGAGCA+TGG | - | chr1_4:20382623-20382642 | None:intergenic | 40.0% | |
| ATCAGCTGAAATCCCATACA+TGG | + | chr1_4:20382652-20382671 | Msa0155180:CDS | 40.0% | |
| TCAGCTGAAATCCCATACAT+GGG | + | chr1_4:20382653-20382672 | Msa0155180:CDS | 40.0% | |
| ! | TGCTTTTCCATCCCATGTAT+GGG | - | chr1_4:20382667-20382686 | None:intergenic | 40.0% |
| !! | TTGCTTTTCCATCCCATGTA+TGG | - | chr1_4:20382668-20382687 | None:intergenic | 40.0% |
| ATAGCCCAATAAACAGCAAC+AGG | - | chr1_4:20382957-20382976 | None:intergenic | 40.0% | |
| ! | ACAAGGAGCAGAAAGCATAT+AGG | + | chr1_4:20383325-20383344 | Msa0155180:CDS | 40.0% |
| TTCAAGCCATCAAAGACAAG+GGG | - | chr1_4:20383620-20383639 | None:intergenic | 40.0% | |
| GTTCAAGCCATCAAAGACAA+GGG | - | chr1_4:20383621-20383640 | None:intergenic | 40.0% | |
| TGTTCAAGCCATCAAAGACA+AGG | - | chr1_4:20383622-20383641 | None:intergenic | 40.0% | |
| TGATGGCTTGAACAGACAAA+TGG | + | chr1_4:20383628-20383647 | Msa0155180:CDS | 40.0% | |
| GACTGAATTGTCCGCTATAT+TGG | + | chr1_4:20383719-20383738 | Msa0155180:intron | 40.0% | |
| TAGCAAAATCGGTTGCTAGA+GGG | + | chr1_4:20383831-20383850 | Msa0155180:intron | 40.0% | |
| GCTAACCTGTTGAATTAACG+CGG | - | chr1_4:20383993-20384012 | None:intergenic | 40.0% | |
| ! | AGGTTAGCATCGAAGTGTTT+AGG | + | chr1_4:20384005-20384024 | Msa0155180:intron | 40.0% |
| ! | TTAGCATCGAAGTGTTTAGG+AGG | + | chr1_4:20384008-20384027 | Msa0155180:CDS | 40.0% |
| ACTTGAAGCTAGAAATGCCA+TGG | + | chr1_4:20384218-20384237 | Msa0155180:CDS | 40.0% | |
| AAGTACTCAACCACATACCA+TGG | - | chr1_4:20384238-20384257 | None:intergenic | 40.0% | |
| ATCAACCTTATTCCAGCCAA+GGG | - | chr1_4:20384265-20384284 | None:intergenic | 40.0% | |
| TATCAACCTTATTCCAGCCA+AGG | - | chr1_4:20384266-20384285 | None:intergenic | 40.0% | |
| GTAAGTGATTCATCGTCTGT+GGG | - | chr1_4:20384412-20384431 | None:intergenic | 40.0% | |
| AGTAAGTGATTCATCGTCTG+TGG | - | chr1_4:20384413-20384432 | None:intergenic | 40.0% | |
| !! | GTTTTGGGCTGAAATGAAGA+AGG | + | chr1_4:20384447-20384466 | Msa0155180:CDS | 40.0% |
| ! | GCAAAGTCATGTGTCCATTT+TGG | - | chr1_4:20384659-20384678 | None:intergenic | 40.0% |
| AAAGAATCGTTCCTCGTTTC+TGG | + | chr1_4:20384765-20384784 | Msa0155180:CDS | 40.0% | |
| TCAAATGTATGCAACTGCTG+TGG | + | chr1_4:20384943-20384962 | Msa0155180:CDS | 40.0% | |
| !!! | CTGCTGTGGATTTTGAGATA+TGG | + | chr1_4:20384957-20384976 | Msa0155180:CDS | 40.0% |
| !! | GAAAAAGTGCTTGAGAAAGC+TGG | + | chr1_4:20384983-20385002 | Msa0155180:CDS | 40.0% |
| TGCATATTAGCACAAGCAAC+AGG | - | chr1_4:20385058-20385077 | None:intergenic | 40.0% | |
| TGCTTGTGCTAATATGCAGT+TGG | + | chr1_4:20385060-20385079 | Msa0155180:CDS | 40.0% | |
| TACTGTCCTGATTCAAACTG+TGG | + | chr1_4:20385115-20385134 | Msa0155180:CDS | 40.0% | |
| GTTCTTCCACAGTTTGAATC+AGG | - | chr1_4:20385124-20385143 | None:intergenic | 40.0% | |
| !! | GTGTTTGTTTGGTTGGTTTC+TGG | + | chr1_4:20385257-20385276 | Msa0155180:three_prime_UTR | 40.0% |
| GCCTAACATGTCGTCTTCAA+TGG | + | chr1_4:20381682-20381701 | Msa0155180:exon | 45.0% | |
| GCCATTGAAGACGACATGTT+AGG | - | chr1_4:20381686-20381705 | None:intergenic | 45.0% | |
| GTGTCAGCTTATAGCCAACA+AGG | + | chr1_4:20381728-20381747 | Msa0155180:CDS | 45.0% | |
| GAGTTAGGTAAACGGTTTCG+AGG | - | chr1_4:20381793-20381812 | None:intergenic | 45.0% | |
| TACCTAACTCATGTCCACAC+CGG | + | chr1_4:20381803-20381822 | Msa0155180:CDS | 45.0% | |
| TTCCACATCGTACCTTTCAC+CGG | - | chr1_4:20381825-20381844 | None:intergenic | 45.0% | |
| CTGTCTTCTACAAGACCTAC+AGG | - | chr1_4:20382020-20382039 | None:intergenic | 45.0% | |
| GAAGACAGACTTCCCTTATC+TGG | + | chr1_4:20382032-20382051 | Msa0155180:CDS | 45.0% | |
| GGAGGCTCATAACCAGATAA+GGG | - | chr1_4:20382047-20382066 | None:intergenic | 45.0% | |
| AGGAGGCTCATAACCAGATA+AGG | - | chr1_4:20382048-20382067 | None:intergenic | 45.0% | |
| TGCTTCAGTTTACGGATAGG+AGG | - | chr1_4:20382065-20382084 | None:intergenic | 45.0% | |
| ! | ACTGAAGCATATTTCTGCCC+AGG | + | chr1_4:20382076-20382095 | Msa0155180:CDS | 45.0% |
| TAGATGATGAGCACACTTCC+TGG | + | chr1_4:20382591-20382610 | Msa0155180:intron | 45.0% | |
| CTGAAATCCCATACATGGGA+TGG | + | chr1_4:20382657-20382676 | Msa0155180:CDS | 45.0% | |
| CACCTAGTTCAAACACCAAG+TGG | + | chr1_4:20382732-20382751 | Msa0155180:CDS | 45.0% | |
| !! | CACCACTTGGTGTTTGAACT+AGG | - | chr1_4:20382737-20382756 | None:intergenic | 45.0% |
| TGCATAGCTTCAGACAAAGC+AGG | - | chr1_4:20382927-20382946 | None:intergenic | 45.0% | |
| CAGGTGAGCTAGAAGATTAC+TGG | + | chr1_4:20383513-20383532 | Msa0155180:intron | 45.0% | |
| GTGAGCTAGAAGATTACTGG+AGG | + | chr1_4:20383516-20383535 | Msa0155180:CDS | 45.0% | |
| ! | AAGATTACTGGAGGCGTAAG+AGG | + | chr1_4:20383525-20383544 | Msa0155180:CDS | 45.0% |
| ! | AGATTACTGGAGGCGTAAGA+GGG | + | chr1_4:20383526-20383545 | Msa0155180:CDS | 45.0% |
| TCAAGCCATCAAAGACAAGG+GGG | - | chr1_4:20383619-20383638 | None:intergenic | 45.0% | |
| GTAGCAAAATCGGTTGCTAG+AGG | + | chr1_4:20383830-20383849 | Msa0155180:intron | 45.0% | |
| ! | GTTTAGGAGGAAGCATGTGT+TGG | + | chr1_4:20384021-20384040 | Msa0155180:CDS | 45.0% |
| TCTCGTCTCTTATGCTGTCT+AGG | - | chr1_4:20384060-20384079 | None:intergenic | 45.0% | |
| CTTCTTCAATCCATCTACGC+TGG | + | chr1_4:20384085-20384104 | Msa0155180:CDS | 45.0% | |
| TTCTTGTAGTCCAGCGTAGA+TGG | - | chr1_4:20384098-20384117 | None:intergenic | 45.0% | |
| GATCTTGTGGATCCCAATTG+TGG | + | chr1_4:20384159-20384178 | Msa0155180:CDS | 45.0% | |
| GGATCCCAATTGTGGATGAT+TGG | + | chr1_4:20384167-20384186 | Msa0155180:CDS | 45.0% | |
| GGGTCCAATCATCCACAATT+GGG | - | chr1_4:20384174-20384193 | None:intergenic | 45.0% | |
| AGGGTCCAATCATCCACAAT+TGG | - | chr1_4:20384175-20384194 | None:intergenic | 45.0% | |
| GCTAGAAATGCCATGGTATG+TGG | + | chr1_4:20384225-20384244 | Msa0155180:CDS | 45.0% | |
| GGTTGAGTACTTCTATCCCT+TGG | + | chr1_4:20384246-20384265 | Msa0155180:CDS | 45.0% | |
| TCTATCCCTTGGCTGGAATA+AGG | + | chr1_4:20384257-20384276 | Msa0155180:CDS | 45.0% | |
| GGGTTCAGAACAGGTAGAAT+TGG | - | chr1_4:20384316-20384335 | None:intergenic | 45.0% | |
| GGTTCACAATCCTACCTAGA+GGG | - | chr1_4:20384336-20384355 | None:intergenic | 45.0% | |
| TGGTTCACAATCCTACCTAG+AGG | - | chr1_4:20384337-20384356 | None:intergenic | 45.0% | |
| CTTACAAGGTCTTGGAGTCT+TGG | - | chr1_4:20384478-20384497 | None:intergenic | 45.0% | |
| ATGGAGGAACAGACCCAAAA+TGG | + | chr1_4:20384642-20384661 | Msa0155180:CDS | 45.0% | |
| ! | ATCGTTCCTCGTTTCTGGAT+TGG | + | chr1_4:20384770-20384789 | Msa0155180:CDS | 45.0% |
| TCTATGCCAATCCAGAAACG+AGG | - | chr1_4:20384779-20384798 | None:intergenic | 45.0% | |
| TTGCTTAGTAGAACCCAACC+TGG | - | chr1_4:20384890-20384909 | None:intergenic | 45.0% | |
| GGTTGGGTTCTACTAAGCAA+AGG | + | chr1_4:20384890-20384909 | Msa0155180:CDS | 45.0% | |
| GGACCAAATGTGAAACTGCT+CGG | + | chr1_4:20384911-20384930 | Msa0155180:CDS | 45.0% | |
| ! | GTTAGCTACAAGTGTTGCCA+TGG | + | chr1_4:20385160-20385179 | Msa0155180:CDS | 45.0% |
| ! | CCTTTTGTGTGCCCTTGAAT+GGG | + | chr1_4:20385389-20385408 | Msa0155180:three_prime_UTR | 45.0% |
| !! | AAAAATTAAAAAATTAACTT+AGG | + | chr1_4:20382504-20382523 | Msa0155180:intron | 5.0% |
| !! | TAATATCATTAATTATATAT+CGG | - | chr1_4:20383130-20383149 | None:intergenic | 5.0% |
| AACACTATCAGCGACTGCAC+TGG | - | chr1_4:20381885-20381904 | None:intergenic | 50.0% | |
| ! | CGCTGATAGTGTTGCATCCA+AGG | + | chr1_4:20381892-20381911 | Msa0155180:CDS | 50.0% |
| ACACCAAGTGGTGACTCACT+TGG | + | chr1_4:20382744-20382763 | Msa0155180:CDS | 50.0% | |
| CTTCCAAGTGAGTCACCACT+TGG | - | chr1_4:20382750-20382769 | None:intergenic | 50.0% | |
| GGGGGTCCTGAATTTCATTG+TGG | - | chr1_4:20383601-20383620 | None:intergenic | 50.0% | |
| GAGTACTTCTATCCCTTGGC+TGG | + | chr1_4:20384250-20384269 | Msa0155180:CDS | 50.0% | |
| ! | CTACCTGTTCTGAACCCTCT+AGG | + | chr1_4:20384319-20384338 | Msa0155180:CDS | 50.0% |
| CTACCTAGAGGGTTCAGAAC+AGG | - | chr1_4:20384325-20384344 | None:intergenic | 50.0% | |
| ! | CTGTTCTGAACCCTCTAGGT+AGG | + | chr1_4:20384323-20384342 | Msa0155180:CDS | 50.0% |
| CATCGTCTGTGGGACGAAAA+GGG | - | chr1_4:20384402-20384421 | None:intergenic | 50.0% | |
| TCATCGTCTGTGGGACGAAA+AGG | - | chr1_4:20384403-20384422 | None:intergenic | 50.0% | |
| TGTCTCAAACAAGACCAGCC+AGG | + | chr1_4:20384869-20384888 | Msa0155180:CDS | 50.0% | |
| TCAAACAAGACCAGCCAGGT+TGG | + | chr1_4:20384873-20384892 | Msa0155180:CDS | 50.0% | |
| CAAACAAGACCAGCCAGGTT+GGG | + | chr1_4:20384874-20384893 | Msa0155180:CDS | 50.0% | |
| TTAGTAGAACCCAACCTGGC+TGG | - | chr1_4:20384886-20384905 | None:intergenic | 50.0% | |
| CGACCGAGCAGTTTCACATT+TGG | - | chr1_4:20384917-20384936 | None:intergenic | 50.0% | |
| AATGTGAAACTGCTCGGTCG+CGG | + | chr1_4:20384917-20384936 | Msa0155180:CDS | 50.0% | |
| CGTTCTCGTGAGTATGACCA+TGG | - | chr1_4:20385180-20385199 | None:intergenic | 50.0% | |
| ACAAAACCACCACTCTCAGC+AGG | - | chr1_4:20385214-20385233 | None:intergenic | 50.0% | |
| ! | GCCTTTTGTGTGCCCTTGAA+TGG | + | chr1_4:20385388-20385407 | Msa0155180:three_prime_UTR | 50.0% |
| ! | CCCATTCAAGGGCACACAAA+AGG | - | chr1_4:20385392-20385411 | None:intergenic | 50.0% |
| CACCGGTGTGGACATGAGTT+AGG | - | chr1_4:20381808-20381827 | None:intergenic | 55.0% | |
| CTCATGTCCACACCGGTGAA+AGG | + | chr1_4:20381810-20381829 | Msa0155180:CDS | 55.0% | |
| CATCGTACCTTTCACCGGTG+TGG | - | chr1_4:20381820-20381839 | None:intergenic | 55.0% | |
| ! | CACCGGTGAAAGGTACGATG+TGG | + | chr1_4:20381820-20381839 | Msa0155180:CDS | 55.0% |
| ATGTGAGCATGGTGCTCACC+AGG | - | chr1_4:20382612-20382631 | None:intergenic | 55.0% | |
| CAGGACCCCCTTGTCTTTGA+TGG | + | chr1_4:20383611-20383630 | Msa0155180:CDS | 55.0% | |
| GTCTGTGGGACGAAAAGGGA+AGG | - | chr1_4:20384398-20384417 | None:intergenic | 55.0% | |
| AAACCACCACTCTCAGCAGG+AGG | - | chr1_4:20385211-20385230 | None:intergenic | 55.0% | |
| TGGCAGACTGGGACTCCTGT+AGG | + | chr1_4:20382002-20382021 | Msa0155180:intron | 60.0% | |
| GAAGCTCCTCCTGCTGAGAG+TGG | + | chr1_4:20385202-20385221 | Msa0155180:CDS | 60.0% | |
| GCTCCTCCTGCTGAGAGTGG+TGG | + | chr1_4:20385205-20385224 | Msa0155180:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 20381628 | 20385550 | 20381628 | ID=Msa0155180;Name=Msa0155180 |
| chr1_4 | mRNA | 20381628 | 20385550 | 20381628 | ID=Msa0155180-mRNA-1;Parent=Msa0155180;Name=Msa0155180-mRNA-1;_AED=0.02;_eAED=0.02;_QI=61|1|1|1|1|1|7|295|701 |
| chr1_4 | exon | 20381628 | 20381913 | 20381628 | ID=Msa0155180-mRNA-1:exon:7419;Parent=Msa0155180-mRNA-1 |
| chr1_4 | exon | 20382008 | 20382097 | 20382008 | ID=Msa0155180-mRNA-1:exon:7420;Parent=Msa0155180-mRNA-1 |
| chr1_4 | exon | 20382594 | 20383027 | 20382594 | ID=Msa0155180-mRNA-1:exon:7421;Parent=Msa0155180-mRNA-1 |
| chr1_4 | exon | 20383252 | 20383346 | 20383252 | ID=Msa0155180-mRNA-1:exon:7422;Parent=Msa0155180-mRNA-1 |
| chr1_4 | exon | 20383516 | 20383649 | 20383516 | ID=Msa0155180-mRNA-1:exon:7423;Parent=Msa0155180-mRNA-1 |
| chr1_4 | exon | 20384007 | 20384492 | 20384007 | ID=Msa0155180-mRNA-1:exon:7424;Parent=Msa0155180-mRNA-1 |
| chr1_4 | exon | 20384614 | 20385550 | 20384614 | ID=Msa0155180-mRNA-1:exon:7425;Parent=Msa0155180-mRNA-1 |
| chr1_4 | five_prime_UTR | 20381628 | 20381688 | 20381628 | ID=Msa0155180-mRNA-1:five_prime_utr;Parent=Msa0155180-mRNA-1 |
| chr1_4 | CDS | 20381689 | 20381913 | 20381689 | ID=Msa0155180-mRNA-1:cds;Parent=Msa0155180-mRNA-1 |
| chr1_4 | CDS | 20382008 | 20382097 | 20382008 | ID=Msa0155180-mRNA-1:cds;Parent=Msa0155180-mRNA-1 |
| chr1_4 | CDS | 20382594 | 20383027 | 20382594 | ID=Msa0155180-mRNA-1:cds;Parent=Msa0155180-mRNA-1 |
| chr1_4 | CDS | 20383252 | 20383346 | 20383252 | ID=Msa0155180-mRNA-1:cds;Parent=Msa0155180-mRNA-1 |
| chr1_4 | CDS | 20383516 | 20383649 | 20383516 | ID=Msa0155180-mRNA-1:cds;Parent=Msa0155180-mRNA-1 |
| chr1_4 | CDS | 20384007 | 20384492 | 20384007 | ID=Msa0155180-mRNA-1:cds;Parent=Msa0155180-mRNA-1 |
| chr1_4 | CDS | 20384614 | 20385255 | 20384614 | ID=Msa0155180-mRNA-1:cds;Parent=Msa0155180-mRNA-1 |
| chr1_4 | three_prime_UTR | 20385256 | 20385550 | 20385256 | ID=Msa0155180-mRNA-1:three_prime_utr;Parent=Msa0155180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
