AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1023390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1023390 MtrunA17_Chr7g0240951 98.580 352 2 1 1 352 1 349 0.0 720
Msa1023390 MtrunA17_Chr4g0008901 78.481 316 65 2 39 352 1 315 0.0 529
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1023390 AT2G37940.1 74.841 314 70 4 39 352 1 305 4.23e-176 491
Msa1023390 AT2G37940.2 74.841 314 70 4 39 352 1 305 4.23e-176 491
Msa1023390 AT3G54020.1 74.121 313 72 3 39 351 1 304 2.34e-175 489
Msa1023390 AT2G29525.3 68.531 286 86 2 39 321 1 285 2.82e-147 417
Msa1023390 AT2G29525.1 68.531 286 86 2 39 321 1 285 2.82e-147 417
Msa1023390 AT2G29525.4 68.531 286 86 2 39 321 1 285 2.82e-147 417
Msa1023390 AT2G29525.2 72.245 245 68 0 39 283 1 245 2.26e-134 383
Msa1023390 AT2G29525.5 68.750 144 45 0 39 182 1 144 5.36e-72 222

Find 81 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTCTCTCTTGTTCTTCT+TGG 0.163451 7_1:-50998617 None:intergenic
CACTAATGTAAGCTCTTTCT+TGG 0.185485 7_1:-51000551 None:intergenic
AAAATAGAAATGGTGGAAAA+AGG 0.222173 7_1:-50998660 None:intergenic
TTGTTGTCTTTGGTGCTTAA+TGG 0.225434 7_1:-51002198 None:intergenic
TCTGCCATCTTTGTTGTCTT+TGG 0.225602 7_1:-51002208 None:intergenic
TCTATTAAGCACATTGTAAC+TGG 0.245083 7_1:+51003012 Msa1023390:three_prime_UTR
TTCTCTCTCTTGTTCTTCTT+GGG 0.273314 7_1:-50998616 None:intergenic
GTTCCTCACGGCGTGATATA+TGG 0.303732 7_1:+51001437 Msa1023390:intron
CTCTCTTGTTCTTCTTGGGT+TGG 0.304434 7_1:-50998612 None:intergenic
TCAAGCAAATGGAAAGATTC+TGG 0.308676 7_1:+51002819 Msa1023390:CDS
TCAACCTTCTTGTGGAGAAT+TGG 0.320373 7_1:+50999425 Msa1023390:CDS
TTTGAAAGTATTATGGAAAC+TGG 0.321131 7_1:+50998878 Msa1023390:exon
GAGAACCACAAGCTGTTAAA+TGG 0.330358 7_1:+51002240 Msa1023390:CDS
GGCCCTACATTACAGGATCT+TGG 0.350410 7_1:+51000406 Msa1023390:CDS
ACCTCGCGGCAATGGTAGTT+TGG 0.351030 7_1:-51001137 None:intergenic
TCTTGGATTCATGCTTCTTC+CGG 0.352086 7_1:+51000423 Msa1023390:CDS
TAGGCCTGGCCCTACATTAC+AGG 0.353976 7_1:+51000399 Msa1023390:CDS
GTTTGCATACAGTATATTCA+TGG 0.357183 7_1:+51000346 Msa1023390:intron
AGATCTACACAGTTCTAATA+TGG 0.359206 7_1:+51000742 Msa1023390:CDS
TTGTTCTTCTTGGGTTGGTT+TGG 0.360535 7_1:-50998607 None:intergenic
CATACAGTATATTCATGGTT+TGG 0.370336 7_1:+51000351 Msa1023390:intron
AATTGGAAGTATCTTCTTGC+TGG 0.372363 7_1:+50999442 Msa1023390:CDS
AAAATTATTGATTCTTATCT+GGG 0.376330 7_1:+50998803 Msa1023390:five_prime_UTR
ACCTCTTTGTGCCATATCTC+TGG 0.377652 7_1:-51001520 None:intergenic
GTTAACACATACCAGAGATA+TGG 0.395418 7_1:+51001509 Msa1023390:CDS
TACTGTTGATCCTTCAGATT+GGG 0.415523 7_1:+51002266 Msa1023390:CDS
AGTGTTGCAGCTGTCCTGTC+TGG 0.438235 7_1:-51002168 None:intergenic
AACAATATTGTAGCTTTGGT+TGG 0.444930 7_1:+51003054 Msa1023390:three_prime_UTR
TTTAATTGTTTAGCTTCAGC+AGG 0.447762 7_1:+51003090 Msa1023390:three_prime_UTR
AGACAGAGAACTCAAGCAAA+TGG 0.462295 7_1:+51002808 Msa1023390:CDS
TTATTGATTCTTATCTGGGT+TGG 0.464615 7_1:+50998807 Msa1023390:five_prime_UTR
ACCCAGAAAGAAAATAGAAA+TGG 0.465523 7_1:-50998670 None:intergenic
AATCCAAGATCCTGTAATGT+AGG 0.472201 7_1:-51000409 None:intergenic
TATGGAAACTGGTCGTTACA+TGG 0.473914 7_1:+50998889 Msa1023390:exon
CATTGGTCGTGAGGCTTCCA+AGG 0.474527 7_1:+50999015 Msa1023390:CDS
TGCAGGCTTCTCAAGCTCTT+CGG 0.478449 7_1:+51001081 Msa1023390:intron
ACACAGTTCTAATATGGTGC+AGG 0.495189 7_1:+51000748 Msa1023390:CDS
GTTCATTATTTACATAGGCC+TGG 0.507602 7_1:+51000385 Msa1023390:CDS
GCGGCAATGGTAGTTTGGAC+CGG 0.510206 7_1:-51001132 None:intergenic
CAGGTATACTGTTAACTTGG+TGG 0.512985 7_1:+51002019 Msa1023390:intron
GGTGCATAAAGCAGCTAGGA+TGG 0.514790 7_1:+51001652 Msa1023390:intron
TTGCAGGTATACTGTTAACT+TGG 0.522203 7_1:+51002016 Msa1023390:intron
GAGGAGTTCATTATTTACAT+AGG 0.522265 7_1:+51000380 Msa1023390:CDS
AGATCCTGTAATGTAGGGCC+AGG 0.526037 7_1:-51000403 None:intergenic
CAACAACAGAAATGCCAGAC+AGG 0.529688 7_1:+51002154 Msa1023390:intron
TTTCCCTATGCAGTTCCTCA+CGG 0.532758 7_1:+51001425 Msa1023390:intron
ATGTGCTTAATAGATCAATC+AGG 0.534481 7_1:-51003003 None:intergenic
AATGGAAAGATTCTGGAAGA+TGG 0.540879 7_1:+51002826 Msa1023390:CDS
ATACTGTTGATCCTTCAGAT+TGG 0.541564 7_1:+51002265 Msa1023390:CDS
CAGAGTCAGCATGGTGTGCA+TGG 0.542443 7_1:-51002849 None:intergenic
TGAAAGGTTGTAGCTTCTCA+AGG 0.543181 7_1:-51002944 None:intergenic
CTATTAAGCACATTGTAACT+GGG 0.549010 7_1:+51003013 Msa1023390:three_prime_UTR
TATTGCCATTTAACAGCTTG+TGG 0.550640 7_1:-51002245 None:intergenic
GATTATTATACCCAATCTGA+AGG 0.552980 7_1:-51002276 None:intergenic
CGGCAATGGTAGTTTGGACC+GGG 0.553762 7_1:-51001131 None:intergenic
GTAATTATACCTCGCGGCAA+TGG 0.554214 7_1:-51001145 None:intergenic
ATCCAAGATCCTGTAATGTA+GGG 0.556196 7_1:-51000408 None:intergenic
ACTTCCAATTCTCCACAAGA+AGG 0.557814 7_1:-50999429 None:intergenic
TTTGTTGAGAAGAAATTACA+AGG 0.561658 7_1:+51002047 Msa1023390:CDS
CAGAAAGAAAATAGAAATGG+TGG 0.565105 7_1:-50998667 None:intergenic
AATACTAACAATTAATCAAG+AGG 0.568462 7_1:-51001336 None:intergenic
AGCACCAAAGACAACAAAGA+TGG 0.573216 7_1:+51002204 Msa1023390:CDS
TTGGTTTGGTCTGACTGCAA+TGG 0.575988 7_1:-50998593 None:intergenic
CATGCTGACTCTGCTAAGAA+TGG 0.578430 7_1:+51002859 Msa1023390:CDS
CAGTTGACGTAGTTGTTGCA+TGG 0.580185 7_1:+51001727 Msa1023390:CDS
GTCACTTTACATTGGTCGTG+AGG 0.582773 7_1:+50999006 Msa1023390:CDS
AACAGAAATCAACCTTCTTG+TGG 0.588234 7_1:+50999417 Msa1023390:CDS
GAAGAATGGAAGAGGATCTG+AGG 0.592892 7_1:-50998705 None:intergenic
CACAGTTCTAATATGGTGCA+GGG 0.593585 7_1:+51000749 Msa1023390:CDS
GTGCATAAAGCAGCTAGGAT+GGG 0.598096 7_1:+51001653 Msa1023390:CDS
CATTCTTAGCAGAGTCAGCA+TGG 0.603375 7_1:-51002858 None:intergenic
ATTCATGGTTTGGCTGCACG+AGG 0.610043 7_1:+51000361 Msa1023390:CDS
AAACAATTAAACAATGACAA+TGG 0.611112 7_1:-51003078 None:intergenic
CACAGGTGCATAAAGCAGCT+AGG 0.616064 7_1:+51001648 Msa1023390:intron
CACGGCGTGATATATGGATG+TGG 0.638139 7_1:+51001443 Msa1023390:CDS
AATGGCACGCGAGTTGAACA+CGG 0.645385 7_1:-50998575 None:intergenic
GGATGAGGCAGTGTTGCAAG+CGG 0.645457 7_1:-51001295 None:intergenic
ACCAGAGATATGGCACAAAG+AGG 0.649821 7_1:+51001519 Msa1023390:CDS
ACTGCCTCATCCGAAAAGTG+TGG 0.676651 7_1:+51001306 Msa1023390:CDS
CATCCATATATCACGCCGTG+AGG 0.702107 7_1:-51001440 None:intergenic
TCCAAACTACCATTGCCGCG+AGG 0.758771 7_1:+51001136 Msa1023390:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAATTATTGATTCTTATC+TGG + chr7_1:50998802-50998821 Msa1023390:five_prime_UTR 15.0%
!!! AAAATTATTGATTCTTATCT+GGG + chr7_1:50998803-50998822 Msa1023390:five_prime_UTR 15.0%
!!! ATTTAACCTTTTTTCATTTT+TGG + chr7_1:50999076-50999095 Msa1023390:intron 15.0%
!! AAATTACCAAAAATGAAAAA+AGG - chr7_1:50999085-50999104 None:intergenic 15.0%
!! ACTTTCTCATAATTATTATT+CGG + chr7_1:51000155-51000174 Msa1023390:intron 15.0%
!! AAGACATATTTATTATACTA+TGG + chr7_1:51002085-51002104 Msa1023390:intron 15.0%
!!! ATTTAACACTGTAATTTTAA+AGG - chr7_1:51002642-51002661 None:intergenic 15.0%
!! AAAAAATTCAACTAATTGAA+AGG - chr7_1:51002963-51002982 None:intergenic 15.0%
!!! TTAGTTGAATTTTTTTAACT+TGG + chr7_1:51002968-51002987 Msa1023390:three_prime_UTR 15.0%
!! AGTAACCAAAAAAAAAATTA+AGG - chr7_1:51003209-51003228 None:intergenic 15.0%
!!! GTGTTTTTTTGAAAGTATTA+TGG + chr7_1:50998871-50998890 Msa1023390:exon 20.0%
!! AAAGGATAAGAAATAAGATT+TGG + chr7_1:51000187-51000206 Msa1023390:intron 20.0%
!!! TTTTATCATTTTTCCTTGTA+AGG + chr7_1:51000595-51000614 Msa1023390:intron 20.0%
!! CTTATTTATTCACTTATCTT+AGG - chr7_1:51000925-51000944 None:intergenic 20.0%
!! AATAAGCTGATATAAATGAT+CGG + chr7_1:51000939-51000958 Msa1023390:intron 20.0%
!!! TTAAATGCTAATTTTCTTTG+AGG + chr7_1:51001190-51001209 Msa1023390:intron 20.0%
!!! TAAATGCTAATTTTCTTTGA+GGG + chr7_1:51001191-51001210 Msa1023390:intron 20.0%
!! AATACTAACAATTAATCAAG+AGG - chr7_1:51001339-51001358 None:intergenic 20.0%
!!! TCATAAAACTGATTTTTTAC+AGG - chr7_1:51002419-51002438 None:intergenic 20.0%
!! GAAATATTTATTTCGATAGA+AGG - chr7_1:51002558-51002577 None:intergenic 20.0%
!! ATATTTCTTCAGTAAACTTT+CGG + chr7_1:51002571-51002590 Msa1023390:intron 20.0%
!! AAAGAAATGAGTAATTGTAA+AGG - chr7_1:51002725-51002744 None:intergenic 20.0%
!! AAAATGACAATAACAATGTT+AGG - chr7_1:51002782-51002801 None:intergenic 20.0%
!!! TTTTTTTCTACAAATTGGAT+TGG + chr7_1:51002899-51002918 Msa1023390:three_prime_UTR 20.0%
!!! TTTTAACAATATTGTAGCTT+TGG + chr7_1:51003050-51003069 Msa1023390:three_prime_UTR 20.0%
!! AAACAATTAAACAATGACAA+TGG - chr7_1:51003081-51003100 None:intergenic 20.0%
!!! AAAAGGGTAATTGATTTTCT+GGG - chr7_1:50998646-50998665 None:intergenic 25.0%
!!! AAAAAGGGTAATTGATTTTC+TGG - chr7_1:50998647-50998666 None:intergenic 25.0%
!! AAATAGAAATGGTGGAAAAA+GGG - chr7_1:50998662-50998681 None:intergenic 25.0%
!! AAAATAGAAATGGTGGAAAA+AGG - chr7_1:50998663-50998682 None:intergenic 25.0%
!! ACCATTTCTATTTTCTTTCT+GGG + chr7_1:50998669-50998688 Msa1023390:five_prime_UTR 25.0%
!! AAAACGAATTTTGTGAAGAA+TGG - chr7_1:50998722-50998741 None:intergenic 25.0%
!!! AAAATTCGTTTTTTTCTTCC+TGG + chr7_1:50998730-50998749 Msa1023390:five_prime_UTR 25.0%
!!! AAATTCGTTTTTTTCTTCCT+GGG + chr7_1:50998731-50998750 Msa1023390:five_prime_UTR 25.0%
!!! TTTGAAAGTATTATGGAAAC+TGG + chr7_1:50998878-50998897 Msa1023390:exon 25.0%
!!! AAAAACATGTCACTTTACAT+TGG + chr7_1:50998998-50999017 Msa1023390:CDS 25.0%
! AAAAACAAAGGAAAGAGAAA+AGG - chr7_1:50999048-50999067 None:intergenic 25.0%
!!! TTTTTTTTGTGTTAACCATC+CGG + chr7_1:50999113-50999132 Msa1023390:intron 25.0%
! ACAATTATAAGCCAGATTAA+CGG - chr7_1:50999304-50999323 None:intergenic 25.0%
! CAAATCATTACATTCAAACA+TGG - chr7_1:50999365-50999384 None:intergenic 25.0%
!! GTTAAAGTAGTTTTCACATT+TGG + chr7_1:50999663-50999682 Msa1023390:intron 25.0%
! GATTTCTTACTTTCTATATC+AGG + chr7_1:50999757-50999776 Msa1023390:intron 25.0%
!! ATTTTTCTGAATAGAGAAAG+AGG - chr7_1:51000462-51000481 None:intergenic 25.0%
!!! TTTTTGGTCTTGAATATGAA+AGG - chr7_1:51000723-51000742 None:intergenic 25.0%
!!! AATACTTGTTGTATTATGCA+GGG + chr7_1:51001268-51001287 Msa1023390:intron 25.0%
!!! CGTTTTTTCTTTGTTTTGTT+TGG + chr7_1:51001582-51001601 Msa1023390:intron 25.0%
!! TGTTCAATTTTATCTTACTG+TGG + chr7_1:51001610-51001629 Msa1023390:intron 25.0%
!! GAAGAATTTTCTCATTTGAT+CGG + chr7_1:51001753-51001772 Msa1023390:intron 25.0%
! AACAATGTCCTTAAAACTTT+AGG - chr7_1:51001943-51001962 None:intergenic 25.0%
! GATTTACTTGAAAAAAGTTG+TGG + chr7_1:51001963-51001982 Msa1023390:intron 25.0%
! TTTGTTGAGAAGAAATTACA+AGG + chr7_1:51002047-51002066 Msa1023390:CDS 25.0%
! ATTACTAAATCCACTGAAAT+TGG + chr7_1:51002671-51002690 Msa1023390:intron 25.0%
!!! AGAGCTTTTTTTCTACAAAT+TGG + chr7_1:51002894-51002913 Msa1023390:three_prime_UTR 25.0%
!! ACTTTTGATGCAATATGAAT+TGG - chr7_1:51003132-51003151 None:intergenic 25.0%
!!! TGCAGCCTTAATTTTTTTTT+TGG + chr7_1:51003201-51003220 Msa1023390:three_prime_UTR 25.0%
CAGAAAGAAAATAGAAATGG+TGG - chr7_1:50998670-50998689 None:intergenic 30.0%
! CACCATTTCTATTTTCTTTC+TGG + chr7_1:50998668-50998687 Msa1023390:five_prime_UTR 30.0%
ACCCAGAAAGAAAATAGAAA+TGG - chr7_1:50998673-50998692 None:intergenic 30.0%
! AATTTTGTGAAGAATGGAAG+AGG - chr7_1:50998716-50998735 None:intergenic 30.0%
!! TTATTGATTCTTATCTGGGT+TGG + chr7_1:50998807-50998826 Msa1023390:five_prime_UTR 30.0%
CCGCTAATAATTATATGTGT+CGG - chr7_1:50999218-50999237 None:intergenic 30.0%
CCGACACATATAATTATTAG+CGG + chr7_1:50999215-50999234 Msa1023390:intron 30.0%
CATATAATTATTAGCGGTGT+CGG + chr7_1:50999221-50999240 Msa1023390:intron 30.0%
AATTATAAGCCAGATTAACG+GGG - chr7_1:50999302-50999321 None:intergenic 30.0%
CAATTATAAGCCAGATTAAC+GGG - chr7_1:50999303-50999322 None:intergenic 30.0%
! AATGTAATGATTTGCAGCTA+TGG + chr7_1:50999371-50999390 Msa1023390:intron 30.0%
! TGTCCTTTTGTGAAAAAGAA+TGG + chr7_1:50999593-50999612 Msa1023390:intron 30.0%
!! TCTCCATTCTTTTTCACAAA+AGG - chr7_1:50999599-50999618 None:intergenic 30.0%
TCTCAAATTATTAGCAGTGT+CGG - chr7_1:51000076-51000095 None:intergenic 30.0%
ATTATATGTCTCGTAATCCA+AGG + chr7_1:51000116-51000135 Msa1023390:intron 30.0%
! TTATGAGAAAGTATGAAGCA+CGG - chr7_1:51000147-51000166 None:intergenic 30.0%
!! ATTATTCGGTGTTTCAGAAA+AGG + chr7_1:51000169-51000188 Msa1023390:intron 30.0%
GTTTGCATACAGTATATTCA+TGG + chr7_1:51000346-51000365 Msa1023390:intron 30.0%
CATACAGTATATTCATGGTT+TGG + chr7_1:51000351-51000370 Msa1023390:intron 30.0%
GAGGAGTTCATTATTTACAT+AGG + chr7_1:51000380-51000399 Msa1023390:CDS 30.0%
AAGAGGTGAAAATAACTAAC+CGG - chr7_1:51000445-51000464 None:intergenic 30.0%
TTTGATTCTGATTCTGATGT+TGG + chr7_1:51000508-51000527 Msa1023390:intron 30.0%
! TAGAACTGTGTAGATCTTTT+TGG - chr7_1:51000739-51000758 None:intergenic 30.0%
! AGATCTACACAGTTCTAATA+TGG + chr7_1:51000742-51000761 Msa1023390:CDS 30.0%
!! TTTACCGTTTGTTGTTAACA+AGG + chr7_1:51000847-51000866 Msa1023390:intron 30.0%
!! TTACCGTTTGTTGTTAACAA+GGG + chr7_1:51000848-51000867 Msa1023390:intron 30.0%
TTACCCTTGTTAACAACAAA+CGG - chr7_1:51000854-51000873 None:intergenic 30.0%
TTCATGGCCATGTAATATTT+CGG + chr7_1:51000983-51001002 Msa1023390:intron 30.0%
GTATTGCATACATATCCAAT+AGG - chr7_1:51001022-51001041 None:intergenic 30.0%
GTGATTGCTTCTAATAATTC+TGG + chr7_1:51001042-51001061 Msa1023390:intron 30.0%
ACTTCAAGTGACAAAAAAGA+AGG - chr7_1:51001170-51001189 None:intergenic 30.0%
!! CAATACTTGTTGTATTATGC+AGG + chr7_1:51001267-51001286 Msa1023390:intron 30.0%
AATCACGTTAAATCTTGTGT+CGG - chr7_1:51001855-51001874 None:intergenic 30.0%
! CATGAAGTCCTAAAGTTTTA+AGG + chr7_1:51001932-51001951 Msa1023390:intron 30.0%
AAATGTTGTGTTAAAGGACA+TGG - chr7_1:51001990-51002009 None:intergenic 30.0%
ATGTCCTTTAACACAACATT+TGG + chr7_1:51001989-51002008 Msa1023390:intron 30.0%
TCTGTTGTTGTAGAATAACT+AGG - chr7_1:51002144-51002163 None:intergenic 30.0%
GATTATTATACCCAATCTGA+AGG - chr7_1:51002279-51002298 None:intergenic 30.0%
ACAATTTAGTCCAATTTCAG+TGG - chr7_1:51002684-51002703 None:intergenic 30.0%
AATGAGTAATTGTAAAGGTG+TGG - chr7_1:51002720-51002739 None:intergenic 30.0%
ATGTGCTTAATAGATCAATC+AGG - chr7_1:51003006-51003025 None:intergenic 30.0%
TCTATTAAGCACATTGTAAC+TGG + chr7_1:51003012-51003031 Msa1023390:three_prime_UTR 30.0%
CTATTAAGCACATTGTAACT+GGG + chr7_1:51003013-51003032 Msa1023390:three_prime_UTR 30.0%
!! AACAATATTGTAGCTTTGGT+TGG + chr7_1:51003054-51003073 Msa1023390:three_prime_UTR 30.0%
! TTTAATTGTTTAGCTTCAGC+AGG + chr7_1:51003090-51003109 Msa1023390:three_prime_UTR 30.0%
TTCTCTCTCTTGTTCTTCTT+GGG - chr7_1:50998619-50998638 None:intergenic 35.0%
TTTCTCTCTCTTGTTCTTCT+TGG - chr7_1:50998620-50998639 None:intergenic 35.0%
TATCAGAAAAACAAACACCC+AGG - chr7_1:50998751-50998770 None:intergenic 35.0%
ATTCAAGAATCGAACTCGTA+TGG + chr7_1:50999327-50999346 Msa1023390:intron 35.0%
AACAGAAATCAACCTTCTTG+TGG + chr7_1:50999417-50999436 Msa1023390:CDS 35.0%
!! AATTGGAAGTATCTTCTTGC+TGG + chr7_1:50999442-50999461 Msa1023390:CDS 35.0%
!!! TCTTGCTGGTTTAGTTTTTC+AGG + chr7_1:50999456-50999475 Msa1023390:CDS 35.0%
! CATTTTCTCTCATGTTGAGT+TGG + chr7_1:50999724-50999743 Msa1023390:intron 35.0%
! TTGTTTCTCACTATGAAGCA+CGG + chr7_1:51000015-51000034 Msa1023390:intron 35.0%
GTTCATTATTTACATAGGCC+TGG + chr7_1:51000385-51000404 Msa1023390:CDS 35.0%
ATCCAAGATCCTGTAATGTA+GGG - chr7_1:51000411-51000430 None:intergenic 35.0%
AATCCAAGATCCTGTAATGT+AGG - chr7_1:51000412-51000431 None:intergenic 35.0%
!!! CTGATGTTGGTGACTTTTAT+AGG + chr7_1:51000521-51000540 Msa1023390:intron 35.0%
CACTAATGTAAGCTCTTTCT+TGG - chr7_1:51000554-51000573 None:intergenic 35.0%
GAAAGTTGAGAATCCTTACA+AGG - chr7_1:51000611-51000630 None:intergenic 35.0%
TCATGGCCATGTAATATTTC+GGG + chr7_1:51000984-51001003 Msa1023390:intron 35.0%
AATCGACCCGAAATATTACA+TGG - chr7_1:51000993-51001012 None:intergenic 35.0%
! GGGTCGATTTAATAACCTAT+TGG + chr7_1:51001004-51001023 Msa1023390:intron 35.0%
AAGAAGGTAATTATACCTCG+CGG - chr7_1:51001154-51001173 None:intergenic 35.0%
!!! TTGTTGTTTTGGTGCTCATT+TGG + chr7_1:51001400-51001419 Msa1023390:intron 35.0%
GTTAACACATACCAGAGATA+TGG + chr7_1:51001509-51001528 Msa1023390:CDS 35.0%
CACAAGATTTAACGTGATTG+AGG + chr7_1:51001856-51001875 Msa1023390:intron 35.0%
!! CTTTAGGACTTCATGCAATT+TGG - chr7_1:51001927-51001946 None:intergenic 35.0%
GGATCCAAATGTTGTGTTAA+AGG - chr7_1:51001996-51002015 None:intergenic 35.0%
AAGTTAACAGTATACCTGCA+AGG - chr7_1:51002017-51002036 None:intergenic 35.0%
TTGCAGGTATACTGTTAACT+TGG + chr7_1:51002016-51002035 Msa1023390:intron 35.0%
!! TTGTTGTCTTTGGTGCTTAA+TGG - chr7_1:51002201-51002220 None:intergenic 35.0%
! TATTGCCATTTAACAGCTTG+TGG - chr7_1:51002248-51002267 None:intergenic 35.0%
ATACTGTTGATCCTTCAGAT+TGG + chr7_1:51002265-51002284 Msa1023390:CDS 35.0%
TACTGTTGATCCTTCAGATT+GGG + chr7_1:51002266-51002285 Msa1023390:CDS 35.0%
!!! TGTCTATAAGTGTTTTGACG+CGG - chr7_1:51002452-51002471 None:intergenic 35.0%
! GTGTGTTTAGATCCACATTT+TGG - chr7_1:51002528-51002547 None:intergenic 35.0%
CATGTCACTGTCTTATGATA+TGG + chr7_1:51002755-51002774 Msa1023390:intron 35.0%
TCAAGCAAATGGAAAGATTC+TGG + chr7_1:51002819-51002838 Msa1023390:CDS 35.0%
! AATGGAAAGATTCTGGAAGA+TGG + chr7_1:51002826-51002845 Msa1023390:CDS 35.0%
!! TTGTTCTTCTTGGGTTGGTT+TGG - chr7_1:50998610-50998629 None:intergenic 40.0%
!!! ATCTGGGTTGGTTTTTGATG+CGG + chr7_1:50998819-50998838 Msa1023390:five_prime_UTR 40.0%
TATGGAAACTGGTCGTTACA+TGG + chr7_1:50998889-50998908 Msa1023390:exon 40.0%
AGAGAAAAGGACAAGAACCT+TGG - chr7_1:50999035-50999054 None:intergenic 40.0%
TATGAAGCAGAGACACTTCT+CGG + chr7_1:50999137-50999156 Msa1023390:intron 40.0%
TCAACCTTCTTGTGGAGAAT+TGG + chr7_1:50999425-50999444 Msa1023390:CDS 40.0%
ACTTCCAATTCTCCACAAGA+AGG - chr7_1:50999432-50999451 None:intergenic 40.0%
TCTTGGATTCATGCTTCTTC+CGG + chr7_1:51000423-51000442 Msa1023390:CDS 40.0%
! TGGTGACTTTTATAGGAGCT+TGG + chr7_1:51000528-51000547 Msa1023390:intron 40.0%
! TGAAATCTGTGCTTTTGCAG+TGG + chr7_1:51000688-51000707 Msa1023390:intron 40.0%
! ACACAGTTCTAATATGGTGC+AGG + chr7_1:51000748-51000767 Msa1023390:CDS 40.0%
! CACAGTTCTAATATGGTGCA+GGG + chr7_1:51000749-51000768 Msa1023390:CDS 40.0%
!!! CAATGCCACTGTTGTTGTTT+TGG + chr7_1:51001389-51001408 Msa1023390:intron 40.0%
!!! GGTTATTTTTGAACTGCCAC+AGG + chr7_1:51001631-51001650 Msa1023390:intron 40.0%
TGTCGGTCAATTTAGTCTCA+GGG - chr7_1:51001838-51001857 None:intergenic 40.0%
! CAGGTATACTGTTAACTTGG+TGG + chr7_1:51002019-51002038 Msa1023390:intron 40.0%
AGCACCAAAGACAACAAAGA+TGG + chr7_1:51002204-51002223 Msa1023390:CDS 40.0%
! TCTGCCATCTTTGTTGTCTT+TGG - chr7_1:51002211-51002230 None:intergenic 40.0%
GAGAACCACAAGCTGTTAAA+TGG + chr7_1:51002240-51002259 Msa1023390:CDS 40.0%
ACATGCGTCTGCTAGAATTA+AGG + chr7_1:51002469-51002488 Msa1023390:intron 40.0%
TTGCCATGGTTTCCAAAATG+TGG + chr7_1:51002513-51002532 Msa1023390:intron 40.0%
!! GATCCACATTTTGGAAACCA+TGG - chr7_1:51002519-51002538 None:intergenic 40.0%
AGACAGAGAACTCAAGCAAA+TGG + chr7_1:51002808-51002827 Msa1023390:CDS 40.0%
TGAAAGGTTGTAGCTTCTCA+AGG - chr7_1:51002947-51002966 None:intergenic 40.0%
!! TTGGTTTGGTCTGACTGCAA+TGG - chr7_1:50998596-50998615 None:intergenic 45.0%
CTCTCTTGTTCTTCTTGGGT+TGG - chr7_1:50998615-50998634 None:intergenic 45.0%
GAAGAATGGAAGAGGATCTG+AGG - chr7_1:50998708-50998727 None:intergenic 45.0%
! GTCACTTTACATTGGTCGTG+AGG + chr7_1:50999006-50999025 Msa1023390:CDS 45.0%
AAGTGTCTCTGCTTCATAGC+CGG - chr7_1:50999135-50999154 None:intergenic 45.0%
!! ATATGTGTCGGTTGTCGTGT+CGG - chr7_1:50999206-50999225 None:intergenic 45.0%
CACAAACACTGGACATGACA+CGG + chr7_1:51000039-51000058 Msa1023390:intron 45.0%
CAGTGAGCAGAGTCAATTCA+TGG + chr7_1:51000967-51000986 Msa1023390:intron 45.0%
AAGCCTGCAGTTAACAAGAG+AGG - chr7_1:51001070-51001089 None:intergenic 45.0%
! TTTTATTCGACGCAGCTTCC+CGG + chr7_1:51001113-51001132 Msa1023390:CDS 45.0%
GTAATTATACCTCGCGGCAA+TGG - chr7_1:51001148-51001167 None:intergenic 45.0%
! AGGACTTCAGCCACACTTTT+CGG - chr7_1:51001319-51001338 None:intergenic 45.0%
GAGCACCAAAACAACAACAG+TGG - chr7_1:51001397-51001416 None:intergenic 45.0%
TTTCCCTATGCAGTTCCTCA+CGG + chr7_1:51001425-51001444 Msa1023390:intron 45.0%
ACCAGAGATATGGCACAAAG+AGG + chr7_1:51001519-51001538 Msa1023390:CDS 45.0%
ACCTCTTTGTGCCATATCTC+TGG - chr7_1:51001523-51001542 None:intergenic 45.0%
GTGCATAAAGCAGCTAGGAT+GGG + chr7_1:51001653-51001672 Msa1023390:CDS 45.0%
CAGTTGACGTAGTTGTTGCA+TGG + chr7_1:51001727-51001746 Msa1023390:CDS 45.0%
GTCGGTCAATTTAGTCTCAG+GGG - chr7_1:51001837-51001856 None:intergenic 45.0%
! GTGTCGGTCAATTTAGTCTC+AGG - chr7_1:51001839-51001858 None:intergenic 45.0%
CACAACATTTGGATCCTTGC+AGG + chr7_1:51002000-51002019 Msa1023390:intron 45.0%
CAACAACAGAAATGCCAGAC+AGG + chr7_1:51002154-51002173 Msa1023390:intron 45.0%
GCTTGTCTTAATGCAGCAAG+AGG - chr7_1:51002613-51002632 None:intergenic 45.0%
CATTCTTAGCAGAGTCAGCA+TGG - chr7_1:51002861-51002880 None:intergenic 45.0%
!! CATGCTGACTCTGCTAAGAA+TGG + chr7_1:51002859-51002878 Msa1023390:CDS 45.0%
!! AAATTTATTATAAAAAACAA+AGG - chr7_1:50999060-50999079 None:intergenic 5.0%
! AATGGCACGCGAGTTGAACA+CGG - chr7_1:50998578-50998597 None:intergenic 50.0%
!! TTCTCGGATTAGCTGTGTCC+CGG + chr7_1:50999153-50999172 Msa1023390:intron 50.0%
!! GGCGTGTTAGTGTTTGGTGT+TGG + chr7_1:50999242-50999261 Msa1023390:intron 50.0%
ATTAACGGGGCTCATTCCTC+CGG - chr7_1:50999289-50999308 None:intergenic 50.0%
AGGAATGAGCCCCGTTAATC+TGG + chr7_1:50999290-50999309 Msa1023390:intron 50.0%
TGAAGCACGGACACAAACAC+TGG + chr7_1:51000028-51000047 Msa1023390:intron 50.0%
TATGAAGCACGGACACTCCT+TGG - chr7_1:51000136-51000155 None:intergenic 50.0%
! ATTCATGGTTTGGCTGCACG+AGG + chr7_1:51000361-51000380 Msa1023390:CDS 50.0%
AGATCCTGTAATGTAGGGCC+AGG - chr7_1:51000406-51000425 None:intergenic 50.0%
GGCCCTACATTACAGGATCT+TGG + chr7_1:51000406-51000425 Msa1023390:CDS 50.0%
GCTCCTCTCTTGTTAACTGC+AGG + chr7_1:51001064-51001083 Msa1023390:intron 50.0%
TGCAGGCTTCTCAAGCTCTT+CGG + chr7_1:51001081-51001100 Msa1023390:intron 50.0%
ACTGCCTCATCCGAAAAGTG+TGG + chr7_1:51001306-51001325 Msa1023390:CDS 50.0%
! TCAGCCACACTTTTCGGATG+AGG - chr7_1:51001313-51001332 None:intergenic 50.0%
GTTCCTCACGGCGTGATATA+TGG + chr7_1:51001437-51001456 Msa1023390:intron 50.0%
CATCCATATATCACGCCGTG+AGG - chr7_1:51001443-51001462 None:intergenic 50.0%
CACGGCGTGATATATGGATG+TGG + chr7_1:51001443-51001462 Msa1023390:CDS 50.0%
! CTAGCTGCTTTATGCACCTG+TGG - chr7_1:51001650-51001669 None:intergenic 50.0%
CACAGGTGCATAAAGCAGCT+AGG + chr7_1:51001648-51001667 Msa1023390:intron 50.0%
GGTGCATAAAGCAGCTAGGA+TGG + chr7_1:51001652-51001671 Msa1023390:intron 50.0%
!!! GCGCTGTTTAGCTTTTGCCA+TGG + chr7_1:51002499-51002518 Msa1023390:intron 50.0%
TGCAGCAAGAGGTCTTTCGA+TGG - chr7_1:51002602-51002621 None:intergenic 50.0%
CATTGGTCGTGAGGCTTCCA+AGG + chr7_1:50999015-50999034 Msa1023390:CDS 55.0%
GTCTCTGCTTCATAGCCGGA+TGG - chr7_1:50999131-50999150 None:intergenic 55.0%
! GATTAGCTGTGTCCCGGTGT+CGG + chr7_1:50999159-50999178 Msa1023390:intron 55.0%
ACGACACACATGTCCGACAC+CGG - chr7_1:50999175-50999194 None:intergenic 55.0%
!! GGTGTCGGCGTGTTAGTGTT+TGG + chr7_1:50999236-50999255 Msa1023390:intron 55.0%
! GTTGGTGCTTCATAGCCGTC+CGG + chr7_1:50999260-50999279 Msa1023390:intron 55.0%
CTTCATAGCCGTCCGGTTAC+CGG + chr7_1:50999267-50999286 Msa1023390:intron 55.0%
TCATTCCTCCGGTAACCGGA+CGG - chr7_1:50999278-50999297 None:intergenic 55.0%
TAGGCCTGGCCCTACATTAC+AGG + chr7_1:51000399-51000418 Msa1023390:CDS 55.0%
CGGCAATGGTAGTTTGGACC+GGG - chr7_1:51001134-51001153 None:intergenic 55.0%
GCGGCAATGGTAGTTTGGAC+CGG - chr7_1:51001135-51001154 None:intergenic 55.0%
TCCAAACTACCATTGCCGCG+AGG + chr7_1:51001136-51001155 Msa1023390:CDS 55.0%
ACCTCGCGGCAATGGTAGTT+TGG - chr7_1:51001140-51001159 None:intergenic 55.0%
GGATGAGGCAGTGTTGCAAG+CGG - chr7_1:51001298-51001317 None:intergenic 55.0%
ACGCCGTGAGGAACTGCATA+GGG - chr7_1:51001431-51001450 None:intergenic 55.0%
AGTGTTGCAGCTGTCCTGTC+TGG - chr7_1:51002171-51002190 None:intergenic 55.0%
CAGAGTCAGCATGGTGTGCA+TGG - chr7_1:51002852-51002871 None:intergenic 55.0%
CGACACACATGTCCGACACC+GGG - chr7_1:50999174-50999193 None:intergenic 60.0%
GGGCTCATTCCTCCGGTAAC+CGG - chr7_1:50999282-50999301 None:intergenic 60.0%
CACGCCGTGAGGAACTGCAT+AGG - chr7_1:51001432-51001451 None:intergenic 60.0%
CATAGCCGTCCGGTTACCGG+AGG + chr7_1:50999270-50999289 Msa1023390:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 50998563 51003229 50998563 ID=Msa1023390;Name=Msa1023390
chr7_1 mRNA 50998563 51003229 50998563 ID=Msa1023390-mRNA-1;Parent=Msa1023390;Name=Msa1023390-mRNA-1;_AED=0.10;_eAED=0.10;_QI=327|1|1|1|1|1|12|341|352
chr7_1 exon 50998563 50999036 50998563 ID=Msa1023390-mRNA-1:exon:10029;Parent=Msa1023390-mRNA-1
chr7_1 exon 50999388 50999477 50999388 ID=Msa1023390-mRNA-1:exon:10030;Parent=Msa1023390-mRNA-1
chr7_1 exon 51000358 51000444 51000358 ID=Msa1023390-mRNA-1:exon:10031;Parent=Msa1023390-mRNA-1
chr7_1 exon 51000543 51000611 51000543 ID=Msa1023390-mRNA-1:exon:10032;Parent=Msa1023390-mRNA-1
chr7_1 exon 51000708 51000788 51000708 ID=Msa1023390-mRNA-1:exon:10033;Parent=Msa1023390-mRNA-1
chr7_1 exon 51001086 51001157 51001086 ID=Msa1023390-mRNA-1:exon:10034;Parent=Msa1023390-mRNA-1
chr7_1 exon 51001289 51001349 51001289 ID=Msa1023390-mRNA-1:exon:10035;Parent=Msa1023390-mRNA-1
chr7_1 exon 51001438 51001540 51001438 ID=Msa1023390-mRNA-1:exon:10036;Parent=Msa1023390-mRNA-1
chr7_1 exon 51001653 51001748 51001653 ID=Msa1023390-mRNA-1:exon:10037;Parent=Msa1023390-mRNA-1
chr7_1 exon 51002022 51002068 51002022 ID=Msa1023390-mRNA-1:exon:10038;Parent=Msa1023390-mRNA-1
chr7_1 exon 51002163 51002287 51002163 ID=Msa1023390-mRNA-1:exon:10039;Parent=Msa1023390-mRNA-1
chr7_1 exon 51002808 51003229 51002808 ID=Msa1023390-mRNA-1:exon:10040;Parent=Msa1023390-mRNA-1
chr7_1 five_prime_UTR 50998563 50998889 50998563 ID=Msa1023390-mRNA-1:five_prime_utr;Parent=Msa1023390-mRNA-1
chr7_1 CDS 50998890 50999036 50998890 ID=Msa1023390-mRNA-1:cds;Parent=Msa1023390-mRNA-1
chr7_1 CDS 50999388 50999477 50999388 ID=Msa1023390-mRNA-1:cds;Parent=Msa1023390-mRNA-1
chr7_1 CDS 51000358 51000444 51000358 ID=Msa1023390-mRNA-1:cds;Parent=Msa1023390-mRNA-1
chr7_1 CDS 51000543 51000611 51000543 ID=Msa1023390-mRNA-1:cds;Parent=Msa1023390-mRNA-1
chr7_1 CDS 51000708 51000788 51000708 ID=Msa1023390-mRNA-1:cds;Parent=Msa1023390-mRNA-1
chr7_1 CDS 51001086 51001157 51001086 ID=Msa1023390-mRNA-1:cds;Parent=Msa1023390-mRNA-1
chr7_1 CDS 51001289 51001349 51001289 ID=Msa1023390-mRNA-1:cds;Parent=Msa1023390-mRNA-1
chr7_1 CDS 51001438 51001540 51001438 ID=Msa1023390-mRNA-1:cds;Parent=Msa1023390-mRNA-1
chr7_1 CDS 51001653 51001748 51001653 ID=Msa1023390-mRNA-1:cds;Parent=Msa1023390-mRNA-1
chr7_1 CDS 51002022 51002068 51002022 ID=Msa1023390-mRNA-1:cds;Parent=Msa1023390-mRNA-1
chr7_1 CDS 51002163 51002287 51002163 ID=Msa1023390-mRNA-1:cds;Parent=Msa1023390-mRNA-1
chr7_1 CDS 51002808 51002888 51002808 ID=Msa1023390-mRNA-1:cds;Parent=Msa1023390-mRNA-1
chr7_1 three_prime_UTR 51002889 51003229 51002889 ID=Msa1023390-mRNA-1:three_prime_utr;Parent=Msa1023390-mRNA-1
Gene Sequence

>Msa1023390

ATGGAAACTGGTCGTTACATGGTTTCATCAACAACAACATTATCATCATCAACAACAACAACAACATCTTCTTCTTCTTCATCATCATCAACAATCTATAATTACAAGAAAAACATGTCACTTTACATTGGTCGTGAGGCTTCCAAGCTATGGAAGAGAGTTTGTGCAGAAACAACAACAGAAATCAACCTTCTTGTGGAGAATTGGAAGTATCTTCTTGCTGGTTTAGTTTTTCAGTATATTCATGGTTTGGCTGCACGAGGAGTTCATTATTTACATAGGCCTGGCCCTACATTACAGGATCTTGGATTCATGCTTCTTCCGGAGCTTGGCCAAGAAAGAGCTTACATTAGTGAATCTTTGTTTACAGTTATCTTTTTATCATTTTTCCTTTGGACTTTTCATCCTTTCATATTCAAGACCAAAAAGATCTACACAGTTCTAATATGGTGCAGGGTTCTAGCTTTCTTAGTTGCTTCTCAAGCTCTTCGGATAGTGACATTTTATTCGACGCAGCTTCCCGGTCCAAACTACCATTGCCGCGAGGGATCTCCGCTTGCAACACTGCCTCATCCGAAAAGTGTGGCTGAAGTCCTCTTGATTAATTTTCCTCACGGCGTGATATATGGATGTGGTGATTTGATATTTTCGTCACACATGATTTTTACTCTAGTCTTTGTTAACACATACCAGAGATATGGCACAAAGAGGTGCATAAAGCAGCTAGGATGGGCTCTTACTGTCATTCAGAGTTTTCTGATAGTAGCATCTCGCAAACATTACACAGTTGACGTAGTTGTTGCATGGTATACTGTTAACTTGGTGGTATTTTTTGTTGAGAAGAAATTACAAGAAATGCCAGACAGGACAGCTGCAACACTGTTGATACCATTAAGCACCAAAGACAACAAAGATGGCAGAAACAAAGAAGAGAACCACAAGCTGTTAAATGGCAATACTGTTGATCCTTCAGATTGGAGACAGAGAACTCAAGCAAATGGAAAGATTCTGGAAGATGGCCATGCACACCATGCTGACTCTGCTAAGAATGGTGCATAG

Protein sequence

>Msa1023390

METGRYMVSSTTTLSSSTTTTTSSSSSSSSTIYNYKKNMSLYIGREASKLWKRVCAETTTEINLLVENWKYLLAGLVFQYIHGLAARGVHYLHRPGPTLQDLGFMLLPELGQERAYISESLFTVIFLSFFLWTFHPFIFKTKKIYTVLIWCRVLAFLVASQALRIVTFYSTQLPGPNYHCREGSPLATLPHPKSVAEVLLINFPHGVIYGCGDLIFSSHMIFTLVFVNTYQRYGTKRCIKQLGWALTVIQSFLIVASRKHYTVDVVVAWYTVNLVVFFVEKKLQEMPDRTAATLLIPLSTKDNKDGRNKEENHKLLNGNTVDPSDWRQRTQANGKILEDGHAHHADSAKNGA*