AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1151030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1151030 MtrunA17_Chr7g0240951 98.854 349 4 0 1 349 1 349 0.0 723
Msa1151030 MtrunA17_Chr4g0008901 78.481 316 65 2 36 349 1 315 0.0 528
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1151030 AT2G37940.1 74.841 314 70 4 36 349 1 305 5.90e-176 490
Msa1151030 AT2G37940.2 74.841 314 70 4 36 349 1 305 5.90e-176 490
Msa1151030 AT3G54020.1 74.121 313 72 3 36 348 1 304 3.37e-175 488
Msa1151030 AT2G29525.3 68.531 286 86 2 36 318 1 285 3.20e-147 417
Msa1151030 AT2G29525.1 68.531 286 86 2 36 318 1 285 3.20e-147 417
Msa1151030 AT2G29525.4 68.531 286 86 2 36 318 1 285 3.20e-147 417
Msa1151030 AT2G29525.2 72.245 245 68 0 36 280 1 245 3.49e-134 382
Msa1151030 AT2G29525.5 68.750 144 45 0 36 179 1 144 4.57e-72 222

Find 80 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTCTCTCTTCTTCTTCT+TGG 0.153779 7_4:-35045726 None:intergenic
CGCTAATGTAAGCTCTTTCT+TGG 0.177322 7_4:-35047621 None:intergenic
AAAATAGAAATGGTGGAAAA+AGG 0.222173 7_4:-35045769 None:intergenic
TTGTTGTCTTTGGTGCTTAA+TGG 0.225434 7_4:-35049373 None:intergenic
TCTGCCATCTTTGTTGTCTT+TGG 0.225602 7_4:-35049383 None:intergenic
TCTATTAAGCACATTGTAAC+TGG 0.245083 7_4:+35050216 Msa1151030:three_prime_UTR
TTCTCTCTCTTCTTCTTCTT+GGG 0.264797 7_4:-35045725 None:intergenic
TCTCTTCTTCTTCTTGGGTT+TGG 0.278327 7_4:-35045720 None:intergenic
GTTCCTCACGGCGTGATATA+TGG 0.303732 7_4:+35048598 Msa1151030:intron
TCAAGCAAATGGAAAGATTC+TGG 0.308676 7_4:+35050023 Msa1151030:CDS
TCAACCTTCTTGTGGAGAAT+TGG 0.320373 7_4:+35046526 Msa1151030:CDS
TTTGAAAGTATTATGGAAAC+TGG 0.321131 7_4:+35045988 Msa1151030:exon
TTCTTGGGTTTGGTTTGGTT+TGG 0.323283 7_4:-35045710 None:intergenic
GAGAACCACAAGCTGTTAAA+TGG 0.330358 7_4:+35049415 Msa1151030:CDS
TCTTCTTCTTGGGTTTGGTT+TGG 0.340472 7_4:-35045715 None:intergenic
GGCCCTACATTACAGGATCT+TGG 0.350410 7_4:+35047476 Msa1151030:CDS
TCTTGGATTCATGCTTCTTC+CGG 0.352086 7_4:+35047493 Msa1151030:CDS
TAGGCCTGGCCCTACATTAC+AGG 0.353976 7_4:+35047469 Msa1151030:CDS
GTTTGCATACAGTATATTCA+TGG 0.357183 7_4:+35047416 Msa1151030:intron
AGATCTACACAGTTCTAATA+TGG 0.359206 7_4:+35047812 Msa1151030:CDS
ACCTCGCGGCAATGGTAGTT+TGG 0.362660 7_4:-35048302 None:intergenic
CATACAGTATATTCATGGTT+TGG 0.370336 7_4:+35047421 Msa1151030:intron
AATTGGAAGTATCTTCTTGC+TGG 0.372363 7_4:+35046543 Msa1151030:CDS
AAAATTATTGATTCTTATCT+GGG 0.376330 7_4:+35045913 Msa1151030:five_prime_UTR
ACCTCTTTGTGCCATATCTC+TGG 0.377652 7_4:-35048681 None:intergenic
GTTAACACATACCAGAGATA+TGG 0.395418 7_4:+35048670 Msa1151030:CDS
TACTGTTGATCCTTCAGATT+GGG 0.415523 7_4:+35049441 Msa1151030:CDS
AAGCACATTGTAACTGGGTT+GGG 0.435494 7_4:+35050222 Msa1151030:three_prime_UTR
AGTGTTGCAGCTGTCCTGTC+TGG 0.438235 7_4:-35049343 None:intergenic
AACAATATTGTAGCTTTGGT+TGG 0.444930 7_4:+35050258 Msa1151030:three_prime_UTR
TTTAATTGTTTAGCTTCAGC+AGG 0.447762 7_4:+35050294 Msa1151030:three_prime_UTR
AGACAGAGAACTCAAGCAAA+TGG 0.462295 7_4:+35050012 Msa1151030:CDS
TTATTGATTCTTATCTGGGT+TGG 0.464615 7_4:+35045917 Msa1151030:five_prime_UTR
AATCCAAGATCCTGTAATGT+AGG 0.472201 7_4:-35047479 None:intergenic
TATGGAAACTGGTCGTTACA+TGG 0.473914 7_4:+35045999 Msa1151030:exon
CATTGGTCGTGAGGCTTCCA+AGG 0.474527 7_4:+35046116 Msa1151030:CDS
TGCAGGCTTCTCAAGCTCTT+CGG 0.478449 7_4:+35048246 Msa1151030:intron
TAAGCACATTGTAACTGGGT+TGG 0.492261 7_4:+35050221 Msa1151030:three_prime_UTR
ACACAGTTCTAATATGGTGC+AGG 0.495189 7_4:+35047818 Msa1151030:CDS
CAGGTATACTGTTAACTTGG+TGG 0.496022 7_4:+35049194 Msa1151030:intron
GTTCATTATTTACATAGGCC+TGG 0.507602 7_4:+35047455 Msa1151030:CDS
GGTGCATAAAGCAGCTAGGA+TGG 0.514790 7_4:+35048813 Msa1151030:intron
TTGCAGGTATACTGTTAACT+TGG 0.522203 7_4:+35049191 Msa1151030:intron
GAGGAGTTCATTATTTACAT+AGG 0.522265 7_4:+35047450 Msa1151030:CDS
AGATCCTGTAATGTAGGGCC+AGG 0.526037 7_4:-35047473 None:intergenic
CAACAACAGAAATGCCAGAC+AGG 0.529688 7_4:+35049329 Msa1151030:intron
TTTCCCCATGCAGTTCCTCA+CGG 0.530587 7_4:+35048586 Msa1151030:intron
ATGTGCTTAATAGATCAATC+AGG 0.534481 7_4:-35050207 None:intergenic
AATGGAAAGATTCTGGAAGA+TGG 0.540879 7_4:+35050030 Msa1151030:CDS
ATACTGTTGATCCTTCAGAT+TGG 0.541564 7_4:+35049440 Msa1151030:CDS
CAGAGTCAGCATGGTGTGCA+TGG 0.542443 7_4:-35050053 None:intergenic
TTGGTTTGGTCTGACTGCAA+TGG 0.546970 7_4:-35045696 None:intergenic
CTATTAAGCACATTGTAACT+GGG 0.549010 7_4:+35050217 Msa1151030:three_prime_UTR
TGAAAGGTTGCAGCTTCTCA+AGG 0.549463 7_4:-35050147 None:intergenic
TATTGCCATTTAACAGCTTG+TGG 0.550640 7_4:-35049420 None:intergenic
GATTATTATACCCAATCTGA+AGG 0.552980 7_4:-35049451 None:intergenic
GTAATAATACCTCGCGGCAA+TGG 0.554214 7_4:-35048310 None:intergenic
ATCCAAGATCCTGTAATGTA+GGG 0.556196 7_4:-35047478 None:intergenic
ACTTCCAATTCTCCACAAGA+AGG 0.557814 7_4:-35046530 None:intergenic
TTTGTTGAGAAGAAATTACA+AGG 0.561658 7_4:+35049222 Msa1151030:CDS
AGCACCAAAGACAACAAAGA+TGG 0.573216 7_4:+35049379 Msa1151030:CDS
CGGCAATGGTAGTTTGGACC+CGG 0.574716 7_4:-35048296 None:intergenic
CATGCTGACTCTGCTAAGAA+TGG 0.578430 7_4:+35050063 Msa1151030:CDS
CAGTTGACGTAGTTGTTGCA+TGG 0.580185 7_4:+35048888 Msa1151030:CDS
GTCACTTTACATTGGTCGTG+AGG 0.582773 7_4:+35046107 Msa1151030:CDS
AACAGAAATCAACCTTCTTG+TGG 0.588234 7_4:+35046518 Msa1151030:CDS
GAAGAATGGAAGAGGATCTG+AGG 0.592892 7_4:-35045815 None:intergenic
CACAGTTCTAATATGGTGCA+GGG 0.593585 7_4:+35047819 Msa1151030:CDS
GTGCATAAAGCAGCTAGGAT+GGG 0.598096 7_4:+35048814 Msa1151030:CDS
CATTCTTAGCAGAGTCAGCA+TGG 0.603375 7_4:-35050062 None:intergenic
ATTCATGGTTTGGCTGCACG+AGG 0.610043 7_4:+35047431 Msa1151030:CDS
AAACAATTAAACAATGACAA+TGG 0.611112 7_4:-35050282 None:intergenic
CACAGGTGCATAAAGCAGCT+AGG 0.616064 7_4:+35048809 Msa1151030:intron
CACGGCGTGATATATGGATG+TGG 0.638139 7_4:+35048604 Msa1151030:CDS
AATGGCACGCGAGTTGAACA+CGG 0.645385 7_4:-35045678 None:intergenic
GGATGAGGCAGTGTTGCAAG+CGG 0.645457 7_4:-35048460 None:intergenic
ACCAGAGATATGGCACAAAG+AGG 0.649821 7_4:+35048680 Msa1151030:CDS
ACTGCCTCATCCGAAAAGTG+TGG 0.676651 7_4:+35048471 Msa1151030:CDS
CATCCATATATCACGCCGTG+AGG 0.702107 7_4:-35048601 None:intergenic
TCCAAACTACCATTGCCGCG+AGG 0.758771 7_4:+35048301 Msa1151030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTTCTTAAATTATTAG+CGG + chr7_4:35046316-35046335 Msa1151030:intron 10.0%
!!! AAAAATTATTGATTCTTATC+TGG + chr7_4:35045912-35045931 Msa1151030:five_prime_UTR 15.0%
!!! AAAATTATTGATTCTTATCT+GGG + chr7_4:35045913-35045932 Msa1151030:five_prime_UTR 15.0%
!!! ATTTAACCTTTTTTCATTTT+TGG + chr7_4:35046179-35046198 Msa1151030:intron 15.0%
!! AAATTACCAAAAATGAAAAA+AGG - chr7_4:35046188-35046207 None:intergenic 15.0%
!! AATTACATATTATATGTGTA+GGG - chr7_4:35046301-35046320 None:intergenic 15.0%
!! AAATTACATATTATATGTGT+AGG - chr7_4:35046302-35046321 None:intergenic 15.0%
!! AATTTCTCAAAATAATAAAG+AGG - chr7_4:35046609-35046628 None:intergenic 15.0%
!! ACTTTCTCATAATTATTATT+CGG + chr7_4:35047225-35047244 Msa1151030:intron 15.0%
!! AAGACATATTTATTATACTA+TGG + chr7_4:35049260-35049279 Msa1151030:intron 15.0%
!! AATTTGAGAGATAAAATTAA+CGG - chr7_4:35049551-35049570 None:intergenic 15.0%
!! TATCGAAATAAATATTTCTT+TGG + chr7_4:35049733-35049752 Msa1151030:intron 15.0%
!!! ATTTAACACTGTAATTTTAA+AGG - chr7_4:35049835-35049854 None:intergenic 15.0%
!! AAAAAATTCAACTAATTGAA+AGG - chr7_4:35050166-35050185 None:intergenic 15.0%
!!! TAGTTGAATTTTTTTTAACT+TGG + chr7_4:35050172-35050191 Msa1151030:three_prime_UTR 15.0%
!!! AAGATTCAGTTTTTAATACT+TGG + chr7_4:35045882-35045901 Msa1151030:five_prime_UTR 20.0%
!!! GTGTTTTTTTGAAAGTATTA+TGG + chr7_4:35045981-35046000 Msa1151030:exon 20.0%
!! TTCAGTATAATTATATGTGT+CGG + chr7_4:35047160-35047179 Msa1151030:intron 20.0%
!! AAAGGATAAGAAATAAGATT+TGG + chr7_4:35047257-35047276 Msa1151030:intron 20.0%
!!! TTTTATCATTTTTCCTTGTA+AGG + chr7_4:35047665-35047684 Msa1151030:intron 20.0%
!! TTATGAAACTTTATAAAAGC+AGG - chr7_4:35047709-35047728 None:intergenic 20.0%
!! CTTATTTATTCACTTATCTT+AGG - chr7_4:35048029-35048048 None:intergenic 20.0%
!! GAAATATTTATTTCGATAGA+AGG - chr7_4:35049731-35049750 None:intergenic 20.0%
!! AACTGAAATTGTTCAATTTA+AGG + chr7_4:35049876-35049895 Msa1151030:intron 20.0%
!! AAAGAAATGAGTAATTGTAA+AGG - chr7_4:35049929-35049948 None:intergenic 20.0%
!!! TTTTAACAATATTGTAGCTT+TGG + chr7_4:35050254-35050273 Msa1151030:three_prime_UTR 20.0%
!! AAACAATTAAACAATGACAA+TGG - chr7_4:35050285-35050304 None:intergenic 20.0%
!! GAGTAACCAAAAAAAAATTA+AGG - chr7_4:35050402-35050421 None:intergenic 20.0%
!! AAATAGAAATGGTGGAAAAA+GGG - chr7_4:35045771-35045790 None:intergenic 25.0%
!! AAAATAGAAATGGTGGAAAA+AGG - chr7_4:35045772-35045791 None:intergenic 25.0%
! AGAAAGAAAAATAGAAATGG+TGG - chr7_4:35045779-35045798 None:intergenic 25.0%
!!! ACCATTTCTATTTTTCTTTC+TGG + chr7_4:35045778-35045797 Msa1151030:five_prime_UTR 25.0%
!!! CCATTTCTATTTTTCTTTCT+GGG + chr7_4:35045779-35045798 Msa1151030:five_prime_UTR 25.0%
!! AAAACGAATTTTGTGAAGAA+TGG - chr7_4:35045832-35045851 None:intergenic 25.0%
!!! AAAATTCGTTTTTTTCTTCC+TGG + chr7_4:35045840-35045859 Msa1151030:five_prime_UTR 25.0%
!!! AAATTCGTTTTTTTCTTCCT+GGG + chr7_4:35045841-35045860 Msa1151030:five_prime_UTR 25.0%
!!! TTTGAAAGTATTATGGAAAC+TGG + chr7_4:35045988-35046007 Msa1151030:exon 25.0%
!!! AAAAACATGTCACTTTACAT+TGG + chr7_4:35046099-35046118 Msa1151030:CDS 25.0%
! AAAAACAAAGGAAAGAGAAA+AGG - chr7_4:35046149-35046168 None:intergenic 25.0%
! AATTATAAGCCAGATTAACA+GGG - chr7_4:35046402-35046421 None:intergenic 25.0%
!! GTTAAAGTAGTTTTCACATT+TGG + chr7_4:35046763-35046782 Msa1151030:intron 25.0%
! GATTTCTTACTTTCTATATC+AGG + chr7_4:35046856-35046875 Msa1151030:intron 25.0%
! AAGAGGTGAAAATAAATAAC+CGG - chr7_4:35047515-35047534 None:intergenic 25.0%
!! ATTTTTCTGAATAGAGAAAG+AGG - chr7_4:35047532-35047551 None:intergenic 25.0%
!!! TTTTTGGTCTTGAATATGAA+AGG - chr7_4:35047793-35047812 None:intergenic 25.0%
! ATAAGCTGATATAAATGATC+TGG + chr7_4:35048044-35048063 Msa1151030:intron 25.0%
! TAAGCTGATATAAATGATCT+GGG + chr7_4:35048045-35048064 Msa1151030:intron 25.0%
! GGTCTATTTAATAACCTATT+GGG + chr7_4:35048169-35048188 Msa1151030:intron 25.0%
!!! TTAAATGCTGATTTTCTTTG+AGG + chr7_4:35048355-35048374 Msa1151030:intron 25.0%
!!! TAAATGCTGATTTTCTTTGA+GGG + chr7_4:35048356-35048375 Msa1151030:intron 25.0%
!!! CGTTTTTTCTTTGTTTTGTT+TGG + chr7_4:35048743-35048762 Msa1151030:intron 25.0%
!! TGTTCAATTTTATCTTACTG+TGG + chr7_4:35048771-35048790 Msa1151030:intron 25.0%
!! GAAGAATTTTCTCATTTGAT+CGG + chr7_4:35048914-35048933 Msa1151030:intron 25.0%
! AACAATGTCCTTAAAACTTT+AGG - chr7_4:35049118-35049137 None:intergenic 25.0%
! GATTTACTTGAAAAAAGTTG+TGG + chr7_4:35049138-35049157 Msa1151030:intron 25.0%
! TTTGTTGAGAAGAAATTACA+AGG + chr7_4:35049222-35049241 Msa1151030:CDS 25.0%
!!! ACTCAACTGTTATTTTTTAC+AGG - chr7_4:35049594-35049613 None:intergenic 25.0%
!! TCAATATTTAGGTCTTTTGA+TGG - chr7_4:35049775-35049794 None:intergenic 25.0%
! AGACTACTAAGTCAATATTT+AGG - chr7_4:35049786-35049805 None:intergenic 25.0%
! AAAGTGACAATAACAATGTT+AGG - chr7_4:35049986-35050005 None:intergenic 25.0%
!!! AAGAGCTTTTTTCTACAAAT+TGG + chr7_4:35050097-35050116 Msa1151030:three_prime_UTR 25.0%
!!! CTTTTTTCTACAAATTGGAT+TGG + chr7_4:35050102-35050121 Msa1151030:three_prime_UTR 25.0%
!! ACTTTTGATGCAATATGAAT+TGG - chr7_4:35050336-35050355 None:intergenic 25.0%
!!! TTGCAGCCTTAATTTTTTTT+TGG + chr7_4:35050393-35050412 Msa1151030:three_prime_UTR 25.0%
!!! AAAAGGGTAATGGATTTTCT+GGG - chr7_4:35045755-35045774 None:intergenic 30.0%
!!! AAAAAGGGTAATGGATTTTC+TGG - chr7_4:35045756-35045775 None:intergenic 30.0%
CCCAGAAAGAAAAATAGAAA+TGG - chr7_4:35045782-35045801 None:intergenic 30.0%
! AATTTTGTGAAGAATGGAAG+AGG - chr7_4:35045826-35045845 None:intergenic 30.0%
!! TTATTGATTCTTATCTGGGT+TGG + chr7_4:35045917-35045936 Msa1151030:five_prime_UTR 30.0%
!!! TTTTTTTTGTGTTAACCGTC+TGG + chr7_4:35046212-35046231 Msa1151030:intron 30.0%
CAATTATAAGCCAGATTAAC+AGG - chr7_4:35046403-35046422 None:intergenic 30.0%
GGCTTATAATTGTTTCATTC+AGG + chr7_4:35046411-35046430 Msa1151030:intron 30.0%
! AATGTTATGATTTGCAGCTA+TGG + chr7_4:35046472-35046491 Msa1151030:intron 30.0%
! TGTCCTTTTGTGAAAAAGAA+TGG + chr7_4:35046693-35046712 Msa1151030:intron 30.0%
!! TCTCCATTCTTTTTCACAAA+AGG - chr7_4:35046699-35046718 None:intergenic 30.0%
! ATAATTATATGTGTCGGTGT+CGG + chr7_4:35047166-35047185 Msa1151030:intron 30.0%
!! ATTATTCGGTGTTTCAGAAA+AGG + chr7_4:35047239-35047258 Msa1151030:intron 30.0%
GTTTGCATACAGTATATTCA+TGG + chr7_4:35047416-35047435 Msa1151030:intron 30.0%
CATACAGTATATTCATGGTT+TGG + chr7_4:35047421-35047440 Msa1151030:intron 30.0%
GAGGAGTTCATTATTTACAT+AGG + chr7_4:35047450-35047469 Msa1151030:CDS 30.0%
TTTGATTCTGATTCTGATGT+TGG + chr7_4:35047578-35047597 Msa1151030:intron 30.0%
! TAGAACTGTGTAGATCTTTT+TGG - chr7_4:35047809-35047828 None:intergenic 30.0%
! AGATCTACACAGTTCTAATA+TGG + chr7_4:35047812-35047831 Msa1151030:CDS 30.0%
TTACCATTGTTGACAACAAA+CGG - chr7_4:35047924-35047943 None:intergenic 30.0%
TTGCATTCTATGATCAATAC+AGG - chr7_4:35048079-35048098 None:intergenic 30.0%
!!! AGAATTTTCGAGTCAATTCA+TGG + chr7_4:35048131-35048150 Msa1151030:intron 30.0%
TTCATGGCCATGTAATATTT+CGG + chr7_4:35048147-35048166 Msa1151030:intron 30.0%
AATAGACCCGAAATATTACA+TGG - chr7_4:35048157-35048176 None:intergenic 30.0%
GGGTCTATTTAATAACCTAT+TGG + chr7_4:35048168-35048187 Msa1151030:intron 30.0%
TATTGCATACATATCCCAAT+AGG - chr7_4:35048186-35048205 None:intergenic 30.0%
! GTGATTGCTTCTAAAAATTC+TGG + chr7_4:35048207-35048226 Msa1151030:intron 30.0%
!! TACTACTTGTTGTATTATGC+AGG + chr7_4:35048432-35048451 Msa1151030:intron 30.0%
!! ACTACTTGTTGTATTATGCA+GGG + chr7_4:35048433-35048452 Msa1151030:intron 30.0%
AATCACGTTAAATCTTGTGT+CGG - chr7_4:35049030-35049049 None:intergenic 30.0%
! GTCTAAAGTGAACTTCAAAT+TGG - chr7_4:35049061-35049080 None:intergenic 30.0%
! CATGAAGTCCTAAAGTTTTA+AGG + chr7_4:35049107-35049126 Msa1151030:intron 30.0%
AAATGTTGTGTTAAAGGACA+TGG - chr7_4:35049165-35049184 None:intergenic 30.0%
ATGTCCTTTAACACAACATT+TGG + chr7_4:35049164-35049183 Msa1151030:intron 30.0%
TCTGTTGTTGTAGAATAACT+AGG - chr7_4:35049319-35049338 None:intergenic 30.0%
GATTATTATACCCAATCTGA+AGG - chr7_4:35049454-35049473 None:intergenic 30.0%
AATGAGTAATTGTAAAGGTG+TGG - chr7_4:35049924-35049943 None:intergenic 30.0%
ATGTGCTTAATAGATCAATC+AGG - chr7_4:35050210-35050229 None:intergenic 30.0%
TCTATTAAGCACATTGTAAC+TGG + chr7_4:35050216-35050235 Msa1151030:three_prime_UTR 30.0%
CTATTAAGCACATTGTAACT+GGG + chr7_4:35050217-35050236 Msa1151030:three_prime_UTR 30.0%
!! AACAATATTGTAGCTTTGGT+TGG + chr7_4:35050258-35050277 Msa1151030:three_prime_UTR 30.0%
! TTTAATTGTTTAGCTTCAGC+AGG + chr7_4:35050294-35050313 Msa1151030:three_prime_UTR 30.0%
TTCTCTCTCTTCTTCTTCTT+GGG - chr7_4:35045728-35045747 None:intergenic 35.0%
TTTCTCTCTCTTCTTCTTCT+TGG - chr7_4:35045729-35045748 None:intergenic 35.0%
! AAATGGTGGAAAAAGGGTAA+TGG - chr7_4:35045765-35045784 None:intergenic 35.0%
TATCAGAAAAACAAACACCC+AGG - chr7_4:35045861-35045880 None:intergenic 35.0%
! TATGAAGCAGAGACACTTTT+CGG + chr7_4:35046236-35046255 Msa1151030:intron 35.0%
AACAGAAATCAACCTTCTTG+TGG + chr7_4:35046518-35046537 Msa1151030:CDS 35.0%
!! AATTGGAAGTATCTTCTTGC+TGG + chr7_4:35046543-35046562 Msa1151030:CDS 35.0%
!!! TCTTGCTGGTTTAGTTTTTC+AGG + chr7_4:35046557-35046576 Msa1151030:CDS 35.0%
! CATTTTCTCTCATGTTGAGT+TGG + chr7_4:35046823-35046842 Msa1151030:intron 35.0%
GTTCATTATTTACATAGGCC+TGG + chr7_4:35047455-35047474 Msa1151030:CDS 35.0%
ATCCAAGATCCTGTAATGTA+GGG - chr7_4:35047481-35047500 None:intergenic 35.0%
AATCCAAGATCCTGTAATGT+AGG - chr7_4:35047482-35047501 None:intergenic 35.0%
!!! CTGATGTTGGTGACTTTTAT+AGG + chr7_4:35047591-35047610 Msa1151030:intron 35.0%
GAAAGTTGAGAATCCTTACA+AGG - chr7_4:35047681-35047700 None:intergenic 35.0%
! TGAAATTTGTGCTTTTGCAG+TGG + chr7_4:35047758-35047777 Msa1151030:intron 35.0%
!! TTACCGTTTGTTGTCAACAA+TGG + chr7_4:35047918-35047937 Msa1151030:intron 35.0%
GATATAAATGATCTGGGAAG+TGG + chr7_4:35048051-35048070 Msa1151030:intron 35.0%
TCATGGCCATGTAATATTTC+GGG + chr7_4:35048148-35048167 Msa1151030:intron 35.0%
! ATTTTATTCGACACAGCTTC+CGG + chr7_4:35048277-35048296 Msa1151030:CDS 35.0%
AAGAAGGTAATAATACCTCG+CGG - chr7_4:35048319-35048338 None:intergenic 35.0%
ACTGCAAGTGACAAAAAAGA+AGG - chr7_4:35048335-35048354 None:intergenic 35.0%
GTTAACACATACCAGAGATA+TGG + chr7_4:35048670-35048689 Msa1151030:CDS 35.0%
!! TCTCTAAAATTGTCTTCGAG+GGG - chr7_4:35048998-35049017 None:intergenic 35.0%
!! GTCTCTAAAATTGTCTTCGA+GGG - chr7_4:35048999-35049018 None:intergenic 35.0%
!! AGTCTCTAAAATTGTCTTCG+AGG - chr7_4:35049000-35049019 None:intergenic 35.0%
CACAAGATTTAACGTGATTG+AGG + chr7_4:35049031-35049050 Msa1151030:intron 35.0%
!! CTTTAGGACTTCATGCAATT+TGG - chr7_4:35049102-35049121 None:intergenic 35.0%
GGATCCAAATGTTGTGTTAA+AGG - chr7_4:35049171-35049190 None:intergenic 35.0%
AAGTTAACAGTATACCTGCA+AGG - chr7_4:35049192-35049211 None:intergenic 35.0%
TTGCAGGTATACTGTTAACT+TGG + chr7_4:35049191-35049210 Msa1151030:intron 35.0%
!! TTGTTGTCTTTGGTGCTTAA+TGG - chr7_4:35049376-35049395 None:intergenic 35.0%
! TATTGCCATTTAACAGCTTG+TGG - chr7_4:35049423-35049442 None:intergenic 35.0%
ATACTGTTGATCCTTCAGAT+TGG + chr7_4:35049440-35049459 Msa1151030:CDS 35.0%
TACTGTTGATCCTTCAGATT+GGG + chr7_4:35049441-35049460 Msa1151030:CDS 35.0%
CATGTCACTGTCTTATGATA+TGG + chr7_4:35049959-35049978 Msa1151030:intron 35.0%
TCAAGCAAATGGAAAGATTC+TGG + chr7_4:35050023-35050042 Msa1151030:CDS 35.0%
! AATGGAAAGATTCTGGAAGA+TGG + chr7_4:35050030-35050049 Msa1151030:CDS 35.0%
!! TTCTTGGGTTTGGTTTGGTT+TGG - chr7_4:35045713-35045732 None:intergenic 40.0%
! TCTTCTTCTTGGGTTTGGTT+TGG - chr7_4:35045718-35045737 None:intergenic 40.0%
TCTCTTCTTCTTCTTGGGTT+TGG - chr7_4:35045723-35045742 None:intergenic 40.0%
!!! ATCTGGGTTGGTTTTTGATG+CGG + chr7_4:35045929-35045948 Msa1151030:five_prime_UTR 40.0%
TATGGAAACTGGTCGTTACA+TGG + chr7_4:35045999-35046018 Msa1151030:exon 40.0%
AGAGAAAAGGACAAGAACCT+TGG - chr7_4:35046136-35046155 None:intergenic 40.0%
TTATATGTGTAGGGTCGTGT+CGG - chr7_4:35046292-35046311 None:intergenic 40.0%
TCAACCTTCTTGTGGAGAAT+TGG + chr7_4:35046526-35046545 Msa1151030:CDS 40.0%
ACTTCCAATTCTCCACAAGA+AGG - chr7_4:35046533-35046552 None:intergenic 40.0%
TCTTGGATTCATGCTTCTTC+CGG + chr7_4:35047493-35047512 Msa1151030:CDS 40.0%
! TGGTGACTTTTATAGGAGCT+TGG + chr7_4:35047598-35047617 Msa1151030:intron 40.0%
CGCTAATGTAAGCTCTTTCT+TGG - chr7_4:35047624-35047643 None:intergenic 40.0%
! ACACAGTTCTAATATGGTGC+AGG + chr7_4:35047818-35047837 Msa1151030:CDS 40.0%
! CACAGTTCTAATATGGTGCA+GGG + chr7_4:35047819-35047838 Msa1151030:CDS 40.0%
! TTTTATTCGACACAGCTTCC+GGG + chr7_4:35048278-35048297 Msa1151030:CDS 40.0%
! AGAACTTCAGCCACACTTTT+CGG - chr7_4:35048484-35048503 None:intergenic 40.0%
!!! CAATGCCACTGTTGTTGTTT+TGG + chr7_4:35048550-35048569 Msa1151030:intron 40.0%
GAGTACCAAAACAACAACAG+TGG - chr7_4:35048558-35048577 None:intergenic 40.0%
ATGGCACAAAGAGGTGAATT+TGG + chr7_4:35048689-35048708 Msa1151030:intron 40.0%
!!! GGTTATTTTTGAACTGCCAC+AGG + chr7_4:35048792-35048811 Msa1151030:intron 40.0%
! CAGGTATACTGTTAACTTGG+TGG + chr7_4:35049194-35049213 Msa1151030:intron 40.0%
AGCACCAAAGACAACAAAGA+TGG + chr7_4:35049379-35049398 Msa1151030:CDS 40.0%
! TCTGCCATCTTTGTTGTCTT+TGG - chr7_4:35049386-35049405 None:intergenic 40.0%
GAGAACCACAAGCTGTTAAA+TGG + chr7_4:35049415-35049434 Msa1151030:CDS 40.0%
! GAGTGTTTAGATCCACGTTT+TGG - chr7_4:35049701-35049720 None:intergenic 40.0%
AGACAGAGAACTCAAGCAAA+TGG + chr7_4:35050012-35050031 Msa1151030:CDS 40.0%
TAAGCACATTGTAACTGGGT+TGG + chr7_4:35050221-35050240 Msa1151030:three_prime_UTR 40.0%
AAGCACATTGTAACTGGGTT+GGG + chr7_4:35050222-35050241 Msa1151030:three_prime_UTR 40.0%
!! TTGGTTTGGTCTGACTGCAA+TGG - chr7_4:35045699-35045718 None:intergenic 45.0%
GAAGAATGGAAGAGGATCTG+AGG - chr7_4:35045818-35045837 None:intergenic 45.0%
! GTCACTTTACATTGGTCGTG+AGG + chr7_4:35046107-35046126 Msa1151030:CDS 45.0%
AGGAATGAGCCCTGTTAATC+TGG + chr7_4:35046390-35046409 Msa1151030:intron 45.0%
CACTATGAAGCACAAACACC+TGG + chr7_4:35047122-35047141 Msa1151030:intron 45.0%
GAAATATCCATGTCGTGTCC+AGG - chr7_4:35047143-35047162 None:intergenic 45.0%
! TGTGCTAATCCAAGGAGTGT+CGG + chr7_4:35047194-35047213 Msa1151030:intron 45.0%
GCTTCTCTGTTGTAAACTGC+AGG + chr7_4:35048229-35048248 Msa1151030:intron 45.0%
GTAATAATACCTCGCGGCAA+TGG - chr7_4:35048313-35048332 None:intergenic 45.0%
ACCAGAGATATGGCACAAAG+AGG + chr7_4:35048680-35048699 Msa1151030:CDS 45.0%
ACCTCTTTGTGCCATATCTC+TGG - chr7_4:35048684-35048703 None:intergenic 45.0%
GTGCATAAAGCAGCTAGGAT+GGG + chr7_4:35048814-35048833 Msa1151030:CDS 45.0%
CAGTTGACGTAGTTGTTGCA+TGG + chr7_4:35048888-35048907 Msa1151030:CDS 45.0%
CACAACATTTGGATCCTTGC+AGG + chr7_4:35049175-35049194 Msa1151030:intron 45.0%
CAACAACAGAAATGCCAGAC+AGG + chr7_4:35049329-35049348 Msa1151030:intron 45.0%
TTCCGCGTCTAAACACCTAT+AGG + chr7_4:35049620-35049639 Msa1151030:intron 45.0%
CACCTATAGGTGTTTAGACG+CGG - chr7_4:35049625-35049644 None:intergenic 45.0%
!!! GATCCACGTTTTGGAAACCA+CGG - chr7_4:35049692-35049711 None:intergenic 45.0%
CATTCTTAGCAGAGTCAGCA+TGG - chr7_4:35050065-35050084 None:intergenic 45.0%
!! CATGCTGACTCTGCTAAGAA+TGG + chr7_4:35050063-35050082 Msa1151030:CDS 45.0%
TGAAAGGTTGCAGCTTCTCA+AGG - chr7_4:35050150-35050169 None:intergenic 45.0%
!! ATTTATTATAAAAAAAACAA+AGG - chr7_4:35046161-35046180 None:intergenic 5.0%
! AATGGCACGCGAGTTGAACA+CGG - chr7_4:35045681-35045700 None:intergenic 50.0%
GTCTCTGCTTCATAGCCAGA+CGG - chr7_4:35046230-35046249 None:intergenic 50.0%
ACAAACACCTGGACACGACA+TGG + chr7_4:35047133-35047152 Msa1151030:intron 50.0%
CGGACACTTGTGCTAATCCA+AGG + chr7_4:35047186-35047205 Msa1151030:intron 50.0%
!! TATGAAGCACCGACACTCCT+TGG - chr7_4:35047206-35047225 None:intergenic 50.0%
! ATTCATGGTTTGGCTGCACG+AGG + chr7_4:35047431-35047450 Msa1151030:CDS 50.0%
AGATCCTGTAATGTAGGGCC+AGG - chr7_4:35047476-35047495 None:intergenic 50.0%
GGCCCTACATTACAGGATCT+TGG + chr7_4:35047476-35047495 Msa1151030:CDS 50.0%
TGCAGGCTTCTCAAGCTCTT+CGG + chr7_4:35048246-35048265 Msa1151030:intron 50.0%
ACTGCCTCATCCGAAAAGTG+TGG + chr7_4:35048471-35048490 Msa1151030:CDS 50.0%
! TCAGCCACACTTTTCGGATG+AGG - chr7_4:35048478-35048497 None:intergenic 50.0%
TTTCCCCATGCAGTTCCTCA+CGG + chr7_4:35048586-35048605 Msa1151030:intron 50.0%
GTTCCTCACGGCGTGATATA+TGG + chr7_4:35048598-35048617 Msa1151030:intron 50.0%
CATCCATATATCACGCCGTG+AGG - chr7_4:35048604-35048623 None:intergenic 50.0%
CACGGCGTGATATATGGATG+TGG + chr7_4:35048604-35048623 Msa1151030:CDS 50.0%
! CTAGCTGCTTTATGCACCTG+TGG - chr7_4:35048811-35048830 None:intergenic 50.0%
CACAGGTGCATAAAGCAGCT+AGG + chr7_4:35048809-35048828 Msa1151030:intron 50.0%
GGTGCATAAAGCAGCTAGGA+TGG + chr7_4:35048813-35048832 Msa1151030:intron 50.0%
TCTAGCAGACGCACACCTAT+AGG - chr7_4:35049638-35049657 None:intergenic 50.0%
TTGCCGTGGTTTCCAAAACG+TGG + chr7_4:35049686-35049705 Msa1151030:intron 50.0%
CATTGGTCGTGAGGCTTCCA+AGG + chr7_4:35046116-35046135 Msa1151030:CDS 55.0%
!! TCGGTGTCAGACACGACACT+CGG - chr7_4:35046273-35046292 None:intergenic 55.0%
GCTTCATAGCCGTCCGGTTA+CGG + chr7_4:35046366-35046385 Msa1151030:intron 55.0%
CTTCATAGCCGTCCGGTTAC+GGG + chr7_4:35046367-35046386 Msa1151030:intron 55.0%
TCATTCCTCCCGTAACCGGA+CGG - chr7_4:35046378-35046397 None:intergenic 55.0%
TAGGCCTGGCCCTACATTAC+AGG + chr7_4:35047469-35047488 Msa1151030:CDS 55.0%
CGGCAATGGTAGTTTGGACC+CGG - chr7_4:35048299-35048318 None:intergenic 55.0%
TCCAAACTACCATTGCCGCG+AGG + chr7_4:35048301-35048320 Msa1151030:CDS 55.0%
ACCTCGCGGCAATGGTAGTT+TGG - chr7_4:35048305-35048324 None:intergenic 55.0%
GGATGAGGCAGTGTTGCAAG+CGG - chr7_4:35048463-35048482 None:intergenic 55.0%
AGTGTTGCAGCTGTCCTGTC+TGG - chr7_4:35049346-35049365 None:intergenic 55.0%
GTGTGCGTCTGCTAGAAGTG+AGG + chr7_4:35049642-35049661 Msa1151030:intron 55.0%
!! GCGCTGTTTTGCTTTTGCCG+TGG + chr7_4:35049672-35049691 Msa1151030:intron 55.0%
CAGAGTCAGCATGGTGTGCA+TGG - chr7_4:35050056-35050075 None:intergenic 55.0%
!! CGGTGTTGACGTGCTCTGTC+CGG + chr7_4:35046336-35046355 Msa1151030:intron 60.0%
TGACGTGCTCTGTCCGGTGT+CGG + chr7_4:35046342-35046361 Msa1151030:intron 60.0%
!! CGGCTATGAAGCACCGACAC+CGG - chr7_4:35046358-35046377 None:intergenic 60.0%
! GTCGGTGCTTCATAGCCGTC+CGG + chr7_4:35046360-35046379 Msa1151030:intron 60.0%
GGGCTCATTCCTCCCGTAAC+CGG - chr7_4:35046382-35046401 None:intergenic 60.0%
ACGCCGTGAGGAACTGCATG+GGG - chr7_4:35048592-35048611 None:intergenic 60.0%
CACGCCGTGAGGAACTGCAT+GGG - chr7_4:35048593-35048612 None:intergenic 60.0%
TCACGCCGTGAGGAACTGCA+TGG - chr7_4:35048594-35048613 None:intergenic 60.0%
CATAGCCGTCCGGTTACGGG+AGG + chr7_4:35046370-35046389 Msa1151030:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 35045666 35050421 35045666 ID=Msa1151030;Name=Msa1151030
chr7_4 mRNA 35045666 35050421 35045666 ID=Msa1151030-mRNA-1;Parent=Msa1151030;Name=Msa1151030-mRNA-1;_AED=0.12;_eAED=0.12;_QI=334|1|1|1|1|1|12|329|349
chr7_4 exon 35045666 35046137 35045666 ID=Msa1151030-mRNA-1:exon:8271;Parent=Msa1151030-mRNA-1
chr7_4 exon 35046489 35046578 35046489 ID=Msa1151030-mRNA-1:exon:8272;Parent=Msa1151030-mRNA-1
chr7_4 exon 35047428 35047514 35047428 ID=Msa1151030-mRNA-1:exon:8273;Parent=Msa1151030-mRNA-1
chr7_4 exon 35047613 35047681 35047613 ID=Msa1151030-mRNA-1:exon:8274;Parent=Msa1151030-mRNA-1
chr7_4 exon 35047778 35047858 35047778 ID=Msa1151030-mRNA-1:exon:8275;Parent=Msa1151030-mRNA-1
chr7_4 exon 35048251 35048322 35048251 ID=Msa1151030-mRNA-1:exon:8276;Parent=Msa1151030-mRNA-1
chr7_4 exon 35048454 35048514 35048454 ID=Msa1151030-mRNA-1:exon:8277;Parent=Msa1151030-mRNA-1
chr7_4 exon 35048599 35048701 35048599 ID=Msa1151030-mRNA-1:exon:8278;Parent=Msa1151030-mRNA-1
chr7_4 exon 35048814 35048909 35048814 ID=Msa1151030-mRNA-1:exon:8279;Parent=Msa1151030-mRNA-1
chr7_4 exon 35049197 35049243 35049197 ID=Msa1151030-mRNA-1:exon:8280;Parent=Msa1151030-mRNA-1
chr7_4 exon 35049338 35049462 35049338 ID=Msa1151030-mRNA-1:exon:8281;Parent=Msa1151030-mRNA-1
chr7_4 exon 35050012 35050421 35050012 ID=Msa1151030-mRNA-1:exon:8282;Parent=Msa1151030-mRNA-1
chr7_4 five_prime_UTR 35045666 35045999 35045666 ID=Msa1151030-mRNA-1:five_prime_utr;Parent=Msa1151030-mRNA-1
chr7_4 CDS 35046000 35046137 35046000 ID=Msa1151030-mRNA-1:cds;Parent=Msa1151030-mRNA-1
chr7_4 CDS 35046489 35046578 35046489 ID=Msa1151030-mRNA-1:cds;Parent=Msa1151030-mRNA-1
chr7_4 CDS 35047428 35047514 35047428 ID=Msa1151030-mRNA-1:cds;Parent=Msa1151030-mRNA-1
chr7_4 CDS 35047613 35047681 35047613 ID=Msa1151030-mRNA-1:cds;Parent=Msa1151030-mRNA-1
chr7_4 CDS 35047778 35047858 35047778 ID=Msa1151030-mRNA-1:cds;Parent=Msa1151030-mRNA-1
chr7_4 CDS 35048251 35048322 35048251 ID=Msa1151030-mRNA-1:cds;Parent=Msa1151030-mRNA-1
chr7_4 CDS 35048454 35048514 35048454 ID=Msa1151030-mRNA-1:cds;Parent=Msa1151030-mRNA-1
chr7_4 CDS 35048599 35048701 35048599 ID=Msa1151030-mRNA-1:cds;Parent=Msa1151030-mRNA-1
chr7_4 CDS 35048814 35048909 35048814 ID=Msa1151030-mRNA-1:cds;Parent=Msa1151030-mRNA-1
chr7_4 CDS 35049197 35049243 35049197 ID=Msa1151030-mRNA-1:cds;Parent=Msa1151030-mRNA-1
chr7_4 CDS 35049338 35049462 35049338 ID=Msa1151030-mRNA-1:cds;Parent=Msa1151030-mRNA-1
chr7_4 CDS 35050012 35050092 35050012 ID=Msa1151030-mRNA-1:cds;Parent=Msa1151030-mRNA-1
chr7_4 three_prime_UTR 35050093 35050421 35050093 ID=Msa1151030-mRNA-1:three_prime_utr;Parent=Msa1151030-mRNA-1
Gene Sequence

>Msa1151030

ATGGAAACTGGTCGTTACATGGTTTCATCAACAACAACATTATCAACAACAACAACAACAACATCTTCTTCATCATCATCAACAATCTATAATTACAAGAAAAACATGTCACTTTACATTGGTCGTGAGGCTTCCAAGCTATGGAAGAGAGTTTGTGCAGAAACAACAACAGAAATCAACCTTCTTGTGGAGAATTGGAAGTATCTTCTTGCTGGTTTAGTTTTTCAGTATATTCATGGTTTGGCTGCACGAGGAGTTCATTATTTACATAGGCCTGGCCCTACATTACAGGATCTTGGATTCATGCTTCTTCCGGAGCTTGGCCAAGAAAGAGCTTACATTAGCGAATCTTTGTTTACAGTTATCTTTTTATCATTTTTCCTTTGGACTTTTCATCCTTTCATATTCAAGACCAAAAAGATCTACACAGTTCTAATATGGTGCAGGGTTCTAGCTTTCTTAGTTGCTTCTCAAGCTCTTCGGATAGTGACATTTTATTCGACACAGCTTCCGGGTCCAAACTACCATTGCCGCGAGGGATCTCCGCTTGCAACACTGCCTCATCCGAAAAGTGTGGCTGAAGTTCTCTTGATTAATTTTCCTCACGGCGTGATATATGGATGTGGTGATTTGATATTTTCATCACACATGATTTTCACTCTAGTCTTTGTTAACACATACCAGAGATATGGCACAAAGAGGTGCATAAAGCAGCTAGGATGGGCTCTTACTGTCATTCAGAGTTTTCTGATAGTAGCATCTCGCAAACATTACACAGTTGACGTAGTTGTTGCATGGTATACTGTTAACTTGGTGGTGTTTTTTGTTGAGAAGAAATTACAAGAAATGCCAGACAGGACAGCTGCAACACTGTTGATACCATTAAGCACCAAAGACAACAAAGATGGCAGAAACAAAGAAGAGAACCACAAGCTGTTAAATGGCAATACTGTTGATCCTTCAGATTGGAGACAGAGAACTCAAGCAAATGGAAAGATTCTGGAAGATGGCCATGCACACCATGCTGACTCTGCTAAGAATGGTGCATAG

Protein sequence

>Msa1151030

METGRYMVSSTTTLSTTTTTTSSSSSSTIYNYKKNMSLYIGREASKLWKRVCAETTTEINLLVENWKYLLAGLVFQYIHGLAARGVHYLHRPGPTLQDLGFMLLPELGQERAYISESLFTVIFLSFFLWTFHPFIFKTKKIYTVLIWCRVLAFLVASQALRIVTFYSTQLPGPNYHCREGSPLATLPHPKSVAEVLLINFPHGVIYGCGDLIFSSHMIFTLVFVNTYQRYGTKRCIKQLGWALTVIQSFLIVASRKHYTVDVVVAWYTVNLVVFFVEKKLQEMPDRTAATLLIPLSTKDNKDGRNKEENHKLLNGNTVDPSDWRQRTQANGKILEDGHAHHADSAKNGA*