AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1024070

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1024070 MtrunA17_Chr4g0025881 75.000 308 20 5 1 251 108 415 5.55e-154 436
Msa1024070 MtrunA17_Chr1g0177351 53.247 308 84 8 2 251 115 420 2.06e-91 277
Msa1024070 MtrunA17_Chr3g0142581 36.264 273 107 5 29 251 114 369 1.22e-46 159
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1024070 AT5G22220.2 48.910 321 90 7 2 250 101 419 2.02e-82 254
Msa1024070 AT5G22220.3 48.910 321 90 7 2 250 101 419 2.33e-82 254
Msa1024070 AT2G36010.1 46.645 313 102 9 2 251 139 449 1.35e-74 234
Msa1024070 AT2G36010.3 46.032 315 103 8 2 251 139 451 6.90e-74 233
Msa1024070 AT2G36010.2 45.091 275 80 7 29 251 225 480 5.72e-60 197
Msa1024070 AT1G47870.1 48.555 173 59 4 29 173 167 337 1.16e-43 152
Msa1024070 AT1G47870.2 48.555 173 59 4 29 173 166 336 1.42e-43 152

Find 73 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTGGACTGGGTGGAAATT+TGG 0.121314 7_1:-52556267 None:intergenic
ATTTCCTTCCCTTTATCTTT+TGG 0.142002 7_1:-52556317 None:intergenic
GATTGATCCTTGTCAACTTC+TGG 0.245702 7_1:-52556284 None:intergenic
CAATGGATGTTTACCTTGTT+AGG 0.281653 7_1:+52556042 Msa1024070:CDS
AAAGAACTTGCCCTGCTTCC+AGG 0.295888 7_1:+52555713 Msa1024070:CDS
CAAACCCCTGGCTCAAATAT+TGG 0.299052 7_1:+52553977 Msa1024070:CDS
GCCGGTTGGATGAACAAATA+AGG 0.325041 7_1:+52555411 Msa1024070:CDS
TCTGGACTGGGTGGAAATTT+GGG 0.328937 7_1:-52556266 None:intergenic
AATTTGGCAGGTTCTCCTTC+AGG 0.331106 7_1:+52554147 Msa1024070:intron
AGACTATCCTGTATCTTCTC+TGG 0.352785 7_1:-52556001 None:intergenic
ACTGCGGTCCCAAAAGATAA+AGG 0.361717 7_1:+52556308 Msa1024070:CDS
ATCCTTGTCAACTTCTGGAC+TGG 0.369071 7_1:-52556279 None:intergenic
TCCTCTTAAATTACCTCATC+AGG 0.378875 7_1:-52555895 None:intergenic
TAATGCTGCTGACACATTAG+AGG 0.382091 7_1:+52554793 Msa1024070:CDS
ACCTTATTTGTTCATCCAAC+CGG 0.394452 7_1:-52555412 None:intergenic
TCAATTTGAAGAGAAGTTTG+AGG 0.408550 7_1:+52556220 Msa1024070:CDS
GATATTACTAATGTTCTTGA+AGG 0.421983 7_1:+52554916 Msa1024070:CDS
TCCTTGTCAACTTCTGGACT+GGG 0.426039 7_1:-52556278 None:intergenic
ACTAATGTTCTTGAAGGGAT+TGG 0.429531 7_1:+52554922 Msa1024070:CDS
ATGACAAAATGCAACAGAAC+TGG 0.436250 7_1:+52553950 Msa1024070:CDS
AATTGAAAATTTAACAATTG+AGG 0.437163 7_1:+52555385 Msa1024070:CDS
GACTATCCTGTATCTTCTCT+GGG 0.438603 7_1:-52556000 None:intergenic
TTCATAGCACGGTACCACTT+TGG 0.475242 7_1:+52555861 Msa1024070:intron
TATTCACCAATATTTGAGCC+AGG 0.483329 7_1:-52553983 None:intergenic
ATATCGACATGGACCAGAGC+AGG 0.485253 7_1:-52554183 None:intergenic
TAAATTACCTCATCAGGATC+AGG 0.485605 7_1:-52555889 None:intergenic
AAATAATCTCACCCCTGCTC+TGG 0.488497 7_1:+52554170 Msa1024070:CDS
CTGCGGTCCCAAAAGATAAA+GGG 0.500490 7_1:+52556309 Msa1024070:CDS
AGGGAAACTAACCTGGAAGC+AGG 0.501301 7_1:-52555724 None:intergenic
TGTGTCTACAGGTGCAAAAG+AGG 0.505867 7_1:+52554884 Msa1024070:intron
ATATTACTAATGTTCTTGAA+GGG 0.506571 7_1:+52554917 Msa1024070:CDS
ACTCACGAAGTCGTGATTGT+TGG 0.507659 7_1:-52556384 None:intergenic
AACAATCACGACTTCGTGAG+TGG 0.509503 7_1:+52556386 Msa1024070:CDS
CTGTAAGCATCACCTCAGTC+TGG 0.515241 7_1:+52556438 Msa1024070:CDS
ATAGTCTTGAGAAGCACAAT+GGG 0.518369 7_1:+52556017 Msa1024070:CDS
ATTATCCCCAGAGAAGATAC+AGG 0.527897 7_1:+52555994 Msa1024070:CDS
AACAATTGAGGAACGCCGGT+TGG 0.534246 7_1:+52555397 Msa1024070:CDS
GTGCAGAGGCAAGATGGTGA+AGG 0.537026 7_1:+52556344 Msa1024070:CDS
TTCACCAATATTTGAGCCAG+GGG 0.548468 7_1:-52553981 None:intergenic
TAACAAGGTAAACATCCATT+GGG 0.550555 7_1:-52556040 None:intergenic
CTAACAAGGTAAACATCCAT+TGG 0.555073 7_1:-52556041 None:intergenic
ATTCACCAATATTTGAGCCA+GGG 0.575795 7_1:-52553982 None:intergenic
GAGAAGCACAATGGGCCCAA+TGG 0.590253 7_1:+52556025 Msa1024070:CDS
AGAACTGGAACTCAAACCCC+TGG 0.591457 7_1:+52553965 Msa1024070:CDS
TTAATAAAACAAGCAGAGGA+TGG 0.593115 7_1:+52554755 Msa1024070:CDS
GGGAGATGCAAGAAAGACTA+CGG 0.594499 7_1:+52555528 Msa1024070:intron
AAAGCATACGGTACCTAACA+AGG 0.595411 7_1:-52556055 None:intergenic
TATCGACATGGACCAGAGCA+GGG 0.597056 7_1:-52554182 None:intergenic
ATAGAAGTGCAGAGGCAAGA+TGG 0.599600 7_1:+52556338 Msa1024070:CDS
GATAGTCTTGAGAAGCACAA+TGG 0.600721 7_1:+52556016 Msa1024070:CDS
CACTTTAATAAAACAAGCAG+AGG 0.601125 7_1:+52554751 Msa1024070:CDS
ATGCTTACAGCAACATCTGA+AGG 0.604268 7_1:-52556425 None:intergenic
ATCTGGAAGGAAAATCCTCT+AGG 0.605318 7_1:+52553927 None:intergenic
ATTTAACAATTGAGGAACGC+CGG 0.605519 7_1:+52555393 Msa1024070:CDS
GGGGTGAGATTATTTCCTGA+AGG 0.606593 7_1:-52554162 None:intergenic
GGGAAACTAACCTGGAAGCA+GGG 0.607358 7_1:-52555723 None:intergenic
TGCAGAGGCAAGATGGTGAA+GGG 0.612592 7_1:+52556345 Msa1024070:CDS
GTCTACAGGTGCAAAAGAGG+AGG 0.622913 7_1:+52554887 Msa1024070:intron
AGTTCAAGAACAGAATTCAG+TGG 0.624987 7_1:+52554960 Msa1024070:CDS
ACAATCACGACTTCGTGAGT+GGG 0.632953 7_1:+52556387 Msa1024070:CDS
GGAAGTACCTGATCCTGATG+AGG 0.635583 7_1:+52555882 Msa1024070:CDS
GGAAGGAAATAGAAGTGCAG+AGG 0.640012 7_1:+52556330 Msa1024070:CDS
ATCGACATGGACCAGAGCAG+GGG 0.645650 7_1:-52554181 None:intergenic
TTGTCAACTTCTGGACTGGG+TGG 0.646660 7_1:-52556275 None:intergenic
TATGAATATCCGCCAGACTG+AGG 0.646882 7_1:-52556450 None:intergenic
AGGATCAGGTACTTCCAAAG+TGG 0.647576 7_1:-52555875 None:intergenic
ACCCAGTCCAGAAGTTGACA+AGG 0.647730 7_1:+52556277 Msa1024070:CDS
GAGAAGTTTGAGGAGATCAA+CGG 0.653388 7_1:+52556230 Msa1024070:CDS
TAAGCATCACCTCAGTCTGG+CGG 0.658447 7_1:+52556441 Msa1024070:CDS
TTGTTGGTAAGATCTGAACT+AGG 0.660286 7_1:-52556368 None:intergenic
GGTCCCAAAAGATAAAGGGA+AGG 0.697878 7_1:+52556313 Msa1024070:CDS
ACTATCCTGTATCTTCTCTG+GGG 0.718625 7_1:-52555999 None:intergenic
TGACAAGGATCAATCAACTG+CGG 0.752599 7_1:+52556292 Msa1024070:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATATTTTTTATATAAATT+TGG + chr7_1:52554131-52554150 Msa1024070:intron 0.0%
!!! TTATTTTCTTTGAATATATT+AGG - chr7_1:52554054-52554073 None:intergenic 10.0%
!!! TTTTTAACAATATGATATAT+AGG - chr7_1:52554702-52554721 None:intergenic 10.0%
!!! TTTTTGACTTATATAATTTA+TGG + chr7_1:52555299-52555318 Msa1024070:intron 10.0%
!!! TCTTGTATATAAATTTATTT+TGG + chr7_1:52555798-52555817 Msa1024070:intron 10.0%
!!! ATTTTTTATATAAATTTGGC+AGG + chr7_1:52554135-52554154 Msa1024070:intron 15.0%
!! TCATATTGTTAAAAACAAAT+AGG + chr7_1:52554707-52554726 Msa1024070:intron 15.0%
!! AATTGAAAATTTAACAATTG+AGG + chr7_1:52555385-52555404 Msa1024070:CDS 15.0%
!!! TTTACTTTTTTTATTATTGC+AGG + chr7_1:52555507-52555526 Msa1024070:intron 15.0%
!!! TTACTTTTTTTATTATTGCA+GGG + chr7_1:52555508-52555527 Msa1024070:intron 15.0%
!! AAATTATGAACATAAAAGTA+CGG - chr7_1:52555624-52555643 None:intergenic 15.0%
!!! AATTTATTTTGGATTTTAAC+TGG + chr7_1:52555809-52555828 Msa1024070:intron 15.0%
!! ATTAGTTAATTGTTGATCAT+CGG + chr7_1:52554243-52554262 Msa1024070:intron 20.0%
!! TTAAGTTAAACCAATGTTTA+GGG + chr7_1:52554540-52554559 Msa1024070:intron 20.0%
!! CAGTAAAACATTTAAAGAAA+GGG - chr7_1:52554649-52554668 None:intergenic 20.0%
!! ATATTACTAATGTTCTTGAA+GGG + chr7_1:52554917-52554936 Msa1024070:CDS 20.0%
!!! CTTGAACTTTTTTTTCTATA+AGG - chr7_1:52554948-52554967 None:intergenic 20.0%
!!! AAGGATTCATTTTTTATCTT+TGG + chr7_1:52555137-52555156 Msa1024070:intron 20.0%
!!! GTAAAGCATACTTTTTTATT+TGG + chr7_1:52555257-52555276 Msa1024070:intron 20.0%
!! TAATAGATCCTTATAAATGT+TGG + chr7_1:52555326-52555345 Msa1024070:intron 20.0%
!!! ATTTTTCCTTAATCCATATT+TGG + chr7_1:52555589-52555608 Msa1024070:intron 20.0%
!!! TTTTTCCTTAATCCATATTT+GGG + chr7_1:52555590-52555609 Msa1024070:intron 20.0%
!! TTCATTGTAATTCATAGATA+GGG - chr7_1:52555746-52555765 None:intergenic 20.0%
!! ATTCATTGTAATTCATAGAT+AGG - chr7_1:52555747-52555766 None:intergenic 20.0%
!!! TTACAATGAATATTTTGATG+TGG + chr7_1:52555756-52555775 Msa1024070:intron 20.0%
!! AATTTATATACAAGAAGCAA+AGG - chr7_1:52555793-52555812 None:intergenic 20.0%
!! TTTTCGAAACTTTGTTAAGT+AGG + chr7_1:52554009-52554028 Msa1024070:intron 25.0%
!! AATAAGTGTAGCCAATATTT+TGG + chr7_1:52554069-52554088 Msa1024070:intron 25.0%
! CTAATCAAAACTGACAAATT+AGG - chr7_1:52554228-52554247 None:intergenic 25.0%
! CAATTTACATTTAGTTAGGA+GGG - chr7_1:52554466-52554485 None:intergenic 25.0%
! GTTAAGTTAAACCAATGTTT+AGG + chr7_1:52554539-52554558 Msa1024070:intron 25.0%
! TAAGTTAAACCAATGTTTAG+GGG + chr7_1:52554541-52554560 Msa1024070:intron 25.0%
! CCAGTAAAACATTTAAAGAA+AGG - chr7_1:52554650-52554669 None:intergenic 25.0%
!! CCTTTCTTTAAATGTTTTAC+TGG + chr7_1:52554647-52554666 Msa1024070:intron 25.0%
! GATATTACTAATGTTCTTGA+AGG + chr7_1:52554916-52554935 Msa1024070:CDS 25.0%
!!! GTAAAAGTGTTTCAACATTT+TGG - chr7_1:52555033-52555052 None:intergenic 25.0%
! TAAACTAGCAAAACTATCAT+CGG - chr7_1:52555108-52555127 None:intergenic 25.0%
! ACATAAATGATTTACAGATC+AGG - chr7_1:52555223-52555242 None:intergenic 25.0%
! ATCAAACACCAACATTTATA+AGG - chr7_1:52555337-52555356 None:intergenic 25.0%
! ATATACTCTTACTAGACAAA+AGG - chr7_1:52555486-52555505 None:intergenic 25.0%
CTAGTTGTCAACCAAAATAT+TGG - chr7_1:52554083-52554102 None:intergenic 30.0%
TAGTGTCATGAAAAAAAGGT+TGG - chr7_1:52554354-52554373 None:intergenic 30.0%
GACTTAGTGTCATGAAAAAA+AGG - chr7_1:52554358-52554377 None:intergenic 30.0%
CCAATTTACATTTAGTTAGG+AGG - chr7_1:52554467-52554486 None:intergenic 30.0%
CCTCCTAACTAAATGTAAAT+TGG + chr7_1:52554464-52554483 Msa1024070:intron 30.0%
CCACCAATTTACATTTAGTT+AGG - chr7_1:52554470-52554489 None:intergenic 30.0%
CCTAACTAAATGTAAATTGG+TGG + chr7_1:52554467-52554486 Msa1024070:intron 30.0%
AAGTTAAACCAATGTTTAGG+GGG + chr7_1:52554542-52554561 Msa1024070:intron 30.0%
CACTTTAATAAAACAAGCAG+AGG + chr7_1:52554751-52554770 Msa1024070:CDS 30.0%
TTAATAAAACAAGCAGAGGA+TGG + chr7_1:52554755-52554774 Msa1024070:CDS 30.0%
TGGTCAATTATCAAAGGAAT+TGG - chr7_1:52555055-52555074 None:intergenic 30.0%
! AATTCCTTTGATAATTGACC+AGG + chr7_1:52555054-52555073 Msa1024070:intron 30.0%
! ATTCCTTTGATAATTGACCA+GGG + chr7_1:52555055-52555074 Msa1024070:intron 30.0%
!! TGATAGTTTTGCTAGTTTAC+AGG + chr7_1:52555109-52555128 Msa1024070:intron 30.0%
!! TGTTTTTGTTTCTCATATGC+AGG + chr7_1:52555358-52555377 Msa1024070:intron 30.0%
TTGGATGAACAAATAAGGTT+TGG + chr7_1:52555416-52555435 Msa1024070:intron 30.0%
TGGATGAACAAATAAGGTTT+GGG + chr7_1:52555417-52555436 Msa1024070:intron 30.0%
! AATGACCCAAATATGGATTA+AGG - chr7_1:52555598-52555617 None:intergenic 30.0%
TAATCTCTTTCCACTCTTAA+AGG + chr7_1:52555664-52555683 Msa1024070:intron 30.0%
! CAAAAAGAAACCTTTAAGAG+TGG - chr7_1:52555677-52555696 None:intergenic 30.0%
! CAAATTCCCTTTTTCCTATT+AGG + chr7_1:52555965-52555984 Msa1024070:intron 30.0%
TAACAAGGTAAACATCCATT+GGG - chr7_1:52556043-52556062 None:intergenic 30.0%
! TTTGCTATCATTTGCTTCAA+AGG + chr7_1:52556086-52556105 Msa1024070:intron 30.0%
TCTCTTCAAATTGACTACAA+TGG - chr7_1:52556214-52556233 None:intergenic 30.0%
TCAATTTGAAGAGAAGTTTG+AGG + chr7_1:52556220-52556239 Msa1024070:CDS 30.0%
! TTTCCTTCCCTTTATCTTTT+GGG - chr7_1:52556319-52556338 None:intergenic 30.0%
! ATTTCCTTCCCTTTATCTTT+TGG - chr7_1:52556320-52556339 None:intergenic 30.0%
ATGACAAAATGCAACAGAAC+TGG + chr7_1:52553950-52553969 Msa1024070:CDS 35.0%
ATTCACCAATATTTGAGCCA+GGG - chr7_1:52553985-52554004 None:intergenic 35.0%
TATTCACCAATATTTGAGCC+AGG - chr7_1:52553986-52554005 None:intergenic 35.0%
AGTTAATTGTTGATCATCGG+TGG + chr7_1:52554246-52554265 Msa1024070:intron 35.0%
GGTGGAGGTTATTTGAAAAA+GGG - chr7_1:52554333-52554352 None:intergenic 35.0%
TGGTGGAGGTTATTTGAAAA+AGG - chr7_1:52554334-52554353 None:intergenic 35.0%
TGTCATGAAAAAAAGGTTGG+TGG - chr7_1:52554351-52554370 None:intergenic 35.0%
! ACTAAATGTAAATTGGTGGC+AGG + chr7_1:52554471-52554490 Msa1024070:intron 35.0%
AATGGCTAAAACAGGTTTAG+TGG + chr7_1:52554568-52554587 Msa1024070:intron 35.0%
ATGGCTAAAACAGGTTTAGT+GGG + chr7_1:52554569-52554588 Msa1024070:intron 35.0%
TCCGAAATGTGTGAAAGTAA+TGG + chr7_1:52554596-52554615 Msa1024070:intron 35.0%
CCCATTACTTTCACACATTT+CGG - chr7_1:52554600-52554619 None:intergenic 35.0%
CCGAAATGTGTGAAAGTAAT+GGG + chr7_1:52554597-52554616 Msa1024070:intron 35.0%
CGAAATGTGTGAAAGTAATG+GGG + chr7_1:52554598-52554617 Msa1024070:intron 35.0%
GAAATGTGTGAAAGTAATGG+GGG + chr7_1:52554599-52554618 Msa1024070:intron 35.0%
TACTGGTGAGTAAAGTTTGT+AGG + chr7_1:52554664-52554683 Msa1024070:intron 35.0%
!! TGATGAGCTTTTTAGTCAAC+AGG - chr7_1:52554733-52554752 None:intergenic 35.0%
AAAGATTCCTTGCTCATTAC+TGG + chr7_1:52554835-52554854 Msa1024070:intron 35.0%
AAACATTCCAGTAATGAGCA+AGG - chr7_1:52554845-52554864 None:intergenic 35.0%
ACTAATGTTCTTGAAGGGAT+TGG + chr7_1:52554922-52554941 Msa1024070:CDS 35.0%
AGTTCAAGAACAGAATTCAG+TGG + chr7_1:52554960-52554979 Msa1024070:CDS 35.0%
!! GTTTTGCTAGTTTACAGGTT+AGG + chr7_1:52555114-52555133 Msa1024070:intron 35.0%
ATTTAACAATTGAGGAACGC+CGG + chr7_1:52555393-52555412 Msa1024070:CDS 35.0%
! ACCTTATTTGTTCATCCAAC+CGG - chr7_1:52555415-52555434 None:intergenic 35.0%
ATGCAACAAAGAATCAGCAA+AGG - chr7_1:52555449-52555468 None:intergenic 35.0%
! AAGGTTTCTTTTTGTCACTG+AGG + chr7_1:52555683-52555702 Msa1024070:intron 35.0%
AGAATGAAACCTTCATAGCA+CGG + chr7_1:52555850-52555869 Msa1024070:intron 35.0%
TAAATTACCTCATCAGGATC+AGG - chr7_1:52555892-52555911 None:intergenic 35.0%
TCCTGATGAGGTAATTTAAG+AGG + chr7_1:52555894-52555913 Msa1024070:intron 35.0%
TCCTCTTAAATTACCTCATC+AGG - chr7_1:52555898-52555917 None:intergenic 35.0%
CAACAGCCTAATAGGAAAAA+GGG - chr7_1:52555974-52555993 None:intergenic 35.0%
TCAACAGCCTAATAGGAAAA+AGG - chr7_1:52555975-52555994 None:intergenic 35.0%
! ATAGTCTTGAGAAGCACAAT+GGG + chr7_1:52556017-52556036 Msa1024070:CDS 35.0%
CTAACAAGGTAAACATCCAT+TGG - chr7_1:52556044-52556063 None:intergenic 35.0%
CAATGGATGTTTACCTTGTT+AGG + chr7_1:52556042-52556061 Msa1024070:CDS 35.0%
!! TTAGGTACCGTATGCTTTTT+GGG + chr7_1:52556060-52556079 Msa1024070:intron 35.0%
! CAAAACACCCAAAAAGCATA+CGG - chr7_1:52556070-52556089 None:intergenic 35.0%
CTATCATTTGCTTCAAAGGT+CGG + chr7_1:52556090-52556109 Msa1024070:intron 35.0%
! TTGTTGGTAAGATCTGAACT+AGG - chr7_1:52556371-52556390 None:intergenic 35.0%
! GTTGCATTTTGTCATCCTAG+AGG - chr7_1:52553945-52553964 None:intergenic 40.0%
TTCACCAATATTTGAGCCAG+GGG - chr7_1:52553984-52554003 None:intergenic 40.0%
AATGAGCTGTCATATCGACA+TGG - chr7_1:52554197-52554216 None:intergenic 40.0%
TGTCGATATGACAGCTCATT+AGG + chr7_1:52554197-52554216 Msa1024070:intron 40.0%
!! CATGAAAAAAAGGTTGGTGG+AGG - chr7_1:52554348-52554367 None:intergenic 40.0%
TCAACTTGAACCAGAGTTGA+GGG - chr7_1:52554390-52554409 None:intergenic 40.0%
TTCAACTTGAACCAGAGTTG+AGG - chr7_1:52554391-52554410 None:intergenic 40.0%
CCATTTAACCCCCTAAACAT+TGG - chr7_1:52554553-52554572 None:intergenic 40.0%
CCAATGTTTAGGGGGTTAAA+TGG + chr7_1:52554550-52554569 Msa1024070:intron 40.0%
TAATGCTGCTGACACATTAG+AGG + chr7_1:52554793-52554812 Msa1024070:CDS 40.0%
TGAGCAAGGAATCTTTAGAC+AGG - chr7_1:52554831-52554850 None:intergenic 40.0%
! CATGAAGCTTTTGTGTCTAC+AGG + chr7_1:52554873-52554892 Msa1024070:intron 40.0%
AGAACAGAATTCAGTGGAAG+TGG + chr7_1:52554966-52554985 Msa1024070:intron 40.0%
GAACAGAATTCAGTGGAAGT+GGG + chr7_1:52554967-52554986 Msa1024070:intron 40.0%
TGCTGGATGTTTCAAAACCA+GGG + chr7_1:52555078-52555097 Msa1024070:intron 40.0%
! TGCTAGTTTACAGGTTAGGA+AGG + chr7_1:52555118-52555137 Msa1024070:intron 40.0%
ACGGCAAAATGACCCAAATA+TGG - chr7_1:52555605-52555624 None:intergenic 40.0%
CATAGATAGGGAAACTAACC+TGG - chr7_1:52555734-52555753 None:intergenic 40.0%
GAAGGTTTCATTCTGGCAAT+AGG - chr7_1:52555844-52555863 None:intergenic 40.0%
GTGCTATGAAGGTTTCATTC+TGG - chr7_1:52555851-52555870 None:intergenic 40.0%
GGGATAATCAACAGCCTAAT+AGG - chr7_1:52555982-52556001 None:intergenic 40.0%
ATTATCCCCAGAGAAGATAC+AGG + chr7_1:52555994-52556013 Msa1024070:CDS 40.0%
ACTATCCTGTATCTTCTCTG+GGG - chr7_1:52556002-52556021 None:intergenic 40.0%
GACTATCCTGTATCTTCTCT+GGG - chr7_1:52556003-52556022 None:intergenic 40.0%
AGACTATCCTGTATCTTCTC+TGG - chr7_1:52556004-52556023 None:intergenic 40.0%
! GATAGTCTTGAGAAGCACAA+TGG + chr7_1:52556016-52556035 Msa1024070:CDS 40.0%
AAAGCATACGGTACCTAACA+AGG - chr7_1:52556058-52556077 None:intergenic 40.0%
!! GTTAGGTACCGTATGCTTTT+TGG + chr7_1:52556059-52556078 Msa1024070:intron 40.0%
CGGTCATTTAGCTATTGCAA+TGG + chr7_1:52556110-52556129 Msa1024070:intron 40.0%
TCAAGCATCATCGCTTCATA+TGG - chr7_1:52556140-52556159 None:intergenic 40.0%
GACTACAATGGCAGTGAAAA+GGG - chr7_1:52556202-52556221 None:intergenic 40.0%
TGACTACAATGGCAGTGAAA+AGG - chr7_1:52556203-52556222 None:intergenic 40.0%
GAGAAGTTTGAGGAGATCAA+CGG + chr7_1:52556230-52556249 Msa1024070:CDS 40.0%
GATTGATCCTTGTCAACTTC+TGG - chr7_1:52556287-52556306 None:intergenic 40.0%
TGACAAGGATCAATCAACTG+CGG + chr7_1:52556292-52556311 Msa1024070:CDS 40.0%
ATGCTTACAGCAACATCTGA+AGG - chr7_1:52556428-52556447 None:intergenic 40.0%
CAAACCCCTGGCTCAAATAT+TGG + chr7_1:52553977-52553996 Msa1024070:CDS 45.0%
AATTTGGCAGGTTCTCCTTC+AGG + chr7_1:52554147-52554166 Msa1024070:intron 45.0%
GGGGTGAGATTATTTCCTGA+AGG - chr7_1:52554165-52554184 None:intergenic 45.0%
AAATAATCTCACCCCTGCTC+TGG + chr7_1:52554170-52554189 Msa1024070:CDS 45.0%
GGGGGTTAAATGGCTAAAAC+AGG + chr7_1:52554560-52554579 Msa1024070:intron 45.0%
TGTGTCTACAGGTGCAAAAG+AGG + chr7_1:52554884-52554903 Msa1024070:intron 45.0%
GCACCCTGGTCAATTATCAA+AGG - chr7_1:52555061-52555080 None:intergenic 45.0%
! TTGATAATTGACCAGGGTGC+TGG + chr7_1:52555061-52555080 Msa1024070:intron 45.0%
!!! TTTTGAAACATCCAGCACCC+TGG - chr7_1:52555075-52555094 None:intergenic 45.0%
GTGCTGGATGTTTCAAAACC+AGG + chr7_1:52555077-52555096 Msa1024070:intron 45.0%
GCTGGATGTTTCAAAACCAG+GGG + chr7_1:52555079-52555098 Msa1024070:intron 45.0%
GCCGGTTGGATGAACAAATA+AGG + chr7_1:52555411-52555430 Msa1024070:CDS 45.0%
GGGAGATGCAAGAAAGACTA+CGG + chr7_1:52555528-52555547 Msa1024070:intron 45.0%
AAAGTGGTACCGTGCTATGA+AGG - chr7_1:52555862-52555881 None:intergenic 45.0%
TTCATAGCACGGTACCACTT+TGG + chr7_1:52555861-52555880 Msa1024070:intron 45.0%
AGGATCAGGTACTTCCAAAG+TGG - chr7_1:52555878-52555897 None:intergenic 45.0%
! TCTGGACTGGGTGGAAATTT+GGG - chr7_1:52556269-52556288 None:intergenic 45.0%
! TTCTGGACTGGGTGGAAATT+TGG - chr7_1:52556270-52556289 None:intergenic 45.0%
TCCTTGTCAACTTCTGGACT+GGG - chr7_1:52556281-52556300 None:intergenic 45.0%
ATCCTTGTCAACTTCTGGAC+TGG - chr7_1:52556282-52556301 None:intergenic 45.0%
ACTGCGGTCCCAAAAGATAA+AGG + chr7_1:52556308-52556327 Msa1024070:CDS 45.0%
CTGCGGTCCCAAAAGATAAA+GGG + chr7_1:52556309-52556328 Msa1024070:CDS 45.0%
GGTCCCAAAAGATAAAGGGA+AGG + chr7_1:52556313-52556332 Msa1024070:CDS 45.0%
! GGAAGGAAATAGAAGTGCAG+AGG + chr7_1:52556330-52556349 Msa1024070:CDS 45.0%
! ATAGAAGTGCAGAGGCAAGA+TGG + chr7_1:52556338-52556357 Msa1024070:CDS 45.0%
ACTCACGAAGTCGTGATTGT+TGG - chr7_1:52556387-52556406 None:intergenic 45.0%
AACAATCACGACTTCGTGAG+TGG + chr7_1:52556386-52556405 Msa1024070:CDS 45.0%
ACAATCACGACTTCGTGAGT+GGG + chr7_1:52556387-52556406 Msa1024070:CDS 45.0%
AGAACTGGAACTCAAACCCC+TGG + chr7_1:52553965-52553984 Msa1024070:CDS 50.0%
TATCGACATGGACCAGAGCA+GGG - chr7_1:52554185-52554204 None:intergenic 50.0%
ATATCGACATGGACCAGAGC+AGG - chr7_1:52554186-52554205 None:intergenic 50.0%
CACTTAACCTCCCTCAACTC+TGG + chr7_1:52554377-52554396 Msa1024070:intron 50.0%
ACTTGAACCAGAGTTGAGGG+AGG - chr7_1:52554387-52554406 None:intergenic 50.0%
GTCTACAGGTGCAAAAGAGG+AGG + chr7_1:52554887-52554906 Msa1024070:intron 50.0%
GGATGTTTCAAAACCAGGGG+AGG + chr7_1:52555082-52555101 Msa1024070:intron 50.0%
AACAATTGAGGAACGCCGGT+TGG + chr7_1:52555397-52555416 Msa1024070:CDS 50.0%
AAAGAACTTGCCCTGCTTCC+AGG + chr7_1:52555713-52555732 Msa1024070:CDS 50.0%
GGGAAACTAACCTGGAAGCA+GGG - chr7_1:52555726-52555745 None:intergenic 50.0%
AGGGAAACTAACCTGGAAGC+AGG - chr7_1:52555727-52555746 None:intergenic 50.0%
!! GGAAGTACCTGATCCTGATG+AGG + chr7_1:52555882-52555901 Msa1024070:CDS 50.0%
! TTGTCAACTTCTGGACTGGG+TGG - chr7_1:52556278-52556297 None:intergenic 50.0%
ACCCAGTCCAGAAGTTGACA+AGG + chr7_1:52556277-52556296 Msa1024070:CDS 50.0%
TGCAGAGGCAAGATGGTGAA+GGG + chr7_1:52556345-52556364 Msa1024070:CDS 50.0%
CTGTAAGCATCACCTCAGTC+TGG + chr7_1:52556438-52556457 Msa1024070:CDS 50.0%
TAAGCATCACCTCAGTCTGG+CGG + chr7_1:52556441-52556460 Msa1024070:CDS 50.0%
ATCGACATGGACCAGAGCAG+GGG - chr7_1:52554184-52554203 None:intergenic 55.0%
AAACTATCATCGGCCTCCCC+TGG - chr7_1:52555098-52555117 None:intergenic 55.0%
! GAGAAGCACAATGGGCCCAA+TGG + chr7_1:52556025-52556044 Msa1024070:CDS 55.0%
GTGCAGAGGCAAGATGGTGA+AGG + chr7_1:52556344-52556363 Msa1024070:CDS 55.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 52553935 52556466 52553935 ID=Msa1024070;Name=Msa1024070
chr7_1 mRNA 52553935 52556466 52553935 ID=Msa1024070-mRNA-1;Parent=Msa1024070;Name=Msa1024070-mRNA-1;_AED=0.23;_eAED=0.23;_QI=15|0.66|0.5|1|0.77|0.8|10|0|252
chr7_1 exon 52553935 52553998 52553935 ID=Msa1024070-mRNA-1:exon:10429;Parent=Msa1024070-mRNA-1
chr7_1 exon 52554157 52554191 52554157 ID=Msa1024070-mRNA-1:exon:10430;Parent=Msa1024070-mRNA-1
chr7_1 exon 52554746 52554814 52554746 ID=Msa1024070-mRNA-1:exon:10431;Parent=Msa1024070-mRNA-1
chr7_1 exon 52554895 52554984 52554895 ID=Msa1024070-mRNA-1:exon:10432;Parent=Msa1024070-mRNA-1
chr7_1 exon 52555380 52555432 52555380 ID=Msa1024070-mRNA-1:exon:10433;Parent=Msa1024070-mRNA-1
chr7_1 exon 52555529 52555579 52555529 ID=Msa1024070-mRNA-1:exon:10434;Parent=Msa1024070-mRNA-1
chr7_1 exon 52555686 52555734 52555686 ID=Msa1024070-mRNA-1:exon:10435;Parent=Msa1024070-mRNA-1
chr7_1 exon 52555868 52555903 52555868 ID=Msa1024070-mRNA-1:exon:10436;Parent=Msa1024070-mRNA-1
chr7_1 exon 52555987 52556063 52555987 ID=Msa1024070-mRNA-1:exon:10437;Parent=Msa1024070-mRNA-1
chr7_1 exon 52556220 52556466 52556220 ID=Msa1024070-mRNA-1:exon:10438;Parent=Msa1024070-mRNA-1
chr7_1 five_prime_UTR 52553935 52553949 52553935 ID=Msa1024070-mRNA-1:five_prime_utr;Parent=Msa1024070-mRNA-1
chr7_1 CDS 52553950 52553998 52553950 ID=Msa1024070-mRNA-1:cds;Parent=Msa1024070-mRNA-1
chr7_1 CDS 52554157 52554191 52554157 ID=Msa1024070-mRNA-1:cds;Parent=Msa1024070-mRNA-1
chr7_1 CDS 52554746 52554814 52554746 ID=Msa1024070-mRNA-1:cds;Parent=Msa1024070-mRNA-1
chr7_1 CDS 52554895 52554984 52554895 ID=Msa1024070-mRNA-1:cds;Parent=Msa1024070-mRNA-1
chr7_1 CDS 52555380 52555432 52555380 ID=Msa1024070-mRNA-1:cds;Parent=Msa1024070-mRNA-1
chr7_1 CDS 52555529 52555579 52555529 ID=Msa1024070-mRNA-1:cds;Parent=Msa1024070-mRNA-1
chr7_1 CDS 52555686 52555734 52555686 ID=Msa1024070-mRNA-1:cds;Parent=Msa1024070-mRNA-1
chr7_1 CDS 52555868 52555903 52555868 ID=Msa1024070-mRNA-1:cds;Parent=Msa1024070-mRNA-1
chr7_1 CDS 52555987 52556063 52555987 ID=Msa1024070-mRNA-1:cds;Parent=Msa1024070-mRNA-1
chr7_1 CDS 52556220 52556466 52556220 ID=Msa1024070-mRNA-1:cds;Parent=Msa1024070-mRNA-1
Gene Sequence

>Msa1024070

ATGACAAAATGCAACAGAACTGGAACTCAAACCCCTGGCTCAAATATTGGTTCTCCTTCAGGAAATAATCTCACCCCTGCTCTGCTCATCACTTTAATAAAACAAGCAGAGGATGGTATTCTTGATCTAAATAATGCTGCTGACACATTAGAGGTGCAAAAGAGGAGGATATATGATATTACTAATGTTCTTGAAGGGATTGGCCTTATAGAAAAAAAAGTTCAAGAACAGAATTCAGTGGAAGCAGAAATTGAAAATTTAACAATTGAGGAACGCCGGTTGGATGAACAAATAAGGGAGATGCAAGAAAGACTACGGAATCTCAGTGAAGAAGAAAATAATGAGAAGTTTCTTTTTGTCACTGAGGAAGATATAAAGAACTTGCCCTGCTTCCAGCACGGTACCACTTTGGAAGTACCTGATCCTGATGAGGCTGTTGATTATCCCCAGAGAAGATACAGGATAGTCTTGAGAAGCACAATGGGCCCAATGGATGTTTACCTTGTTAGTCAATTTGAAGAGAAGTTTGAGGAGATCAACGGTGTTGATGTTGCACCCAAATTTCCACCCAGTCCAGAAGTTGACAAGGATCAATCAACTGCGGTCCCAAAAGATAAAGGGAAGGAAATAGAAGTGCAGAGGCAAGATGGTGAAGGGCCTAGTTCAGATCTTACCAACAATCACGACTTCGTGAGTGGGATCATGAAGATTGTTCCTTCAGATGTTGCTGTAAGCATCACCTCAGTCTGGCGGATA
Protein sequence

>Msa1024070

MTKCNRTGTQTPGSNIGSPSGNNLTPALLITLIKQAEDGILDLNNAADTLEVQKRRIYDITNVLEGIGLIEKKVQEQNSVEAEIENLTIEERRLDEQIREMQERLRNLSEEENNEKFLFVTEEDIKNLPCFQHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPMDVYLVSQFEEKFEEINGVDVAPKFPPSPEVDKDQSTAVPKDKGKEIEVQRQDGEGPSSDLTNNHDFVSGIMKIVPSDVAVSITSVWRI