Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1063980 | XP_003606095.2 | 73.377 | 308 | 19 | 5 | 1 | 245 | 108 | 415 | 3.17e-145 | 424 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1063980 | sp|Q9FV71|E2FB_ARATH | 49.533 | 321 | 82 | 8 | 2 | 244 | 101 | 419 | 4.50e-82 | 256 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1063980 | A0A396I6V2 | 73.377 | 308 | 19 | 5 | 1 | 245 | 108 | 415 | 1.51e-145 | 424 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1063980 | TF | E2F-DP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1024070 | Msa1063980 | 0.885590 | 7.130098e-72 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1063980 | MtrunA17_Chr4g0025881 | 73.377 | 308 | 19 | 5 | 1 | 245 | 108 | 415 | 2.91e-149 | 424 |
| Msa1063980 | MtrunA17_Chr1g0177351 | 57.246 | 276 | 74 | 6 | 14 | 245 | 145 | 420 | 2.37e-94 | 284 |
| Msa1063980 | MtrunA17_Chr3g0142581 | 37.589 | 282 | 109 | 5 | 14 | 245 | 105 | 369 | 6.47e-52 | 172 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1063980 | AT5G22220.3 | 48.750 | 320 | 86 | 6 | 2 | 244 | 101 | 419 | 4.31e-83 | 256 |
| Msa1063980 | AT5G22220.2 | 49.533 | 321 | 82 | 8 | 2 | 244 | 101 | 419 | 4.58e-83 | 256 |
| Msa1063980 | AT2G36010.1 | 50.000 | 282 | 89 | 6 | 14 | 245 | 170 | 449 | 9.26e-79 | 245 |
| Msa1063980 | AT2G36010.3 | 49.648 | 284 | 89 | 6 | 14 | 245 | 170 | 451 | 7.52e-78 | 243 |
| Msa1063980 | AT2G36010.2 | 46.071 | 280 | 80 | 7 | 18 | 245 | 220 | 480 | 1.19e-63 | 207 |
| Msa1063980 | AT1G47870.2 | 50.000 | 182 | 61 | 4 | 14 | 167 | 157 | 336 | 7.30e-49 | 165 |
| Msa1063980 | AT1G47870.1 | 50.000 | 182 | 61 | 4 | 14 | 167 | 158 | 337 | 7.46e-49 | 165 |
Find 67 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGGACTGGGTGGAAATT+TGG | 0.121314 | 7_2:+56280431 | None:intergenic |
| ATTTCCTTCCCTTTATCTTT+TGG | 0.142002 | 7_2:+56280381 | None:intergenic |
| GATTGATCCTTGTCAACTTC+TGG | 0.245702 | 7_2:+56280414 | None:intergenic |
| CAATGGATGTTTACCTTGTT+AGG | 0.281653 | 7_2:-56280656 | Msa1063980:intron |
| AAAGAACTTGCCCTGCTTCC+AGG | 0.295888 | 7_2:-56280985 | Msa1063980:intron |
| CAAACCCCTGGCTCAAATAT+TGG | 0.299052 | 7_2:-56282719 | Msa1063980:intron |
| GCCGGTTGGATGAACAAATA+AGG | 0.325041 | 7_2:-56281287 | Msa1063980:intron |
| TCTGGACTGGGTGGAAATTT+GGG | 0.328937 | 7_2:+56280432 | None:intergenic |
| AGACTATCCTGTATCTTCTC+TGG | 0.352785 | 7_2:+56280697 | None:intergenic |
| ACTGCGGTCCCAAAAGATAA+AGG | 0.361717 | 7_2:-56280390 | Msa1063980:CDS |
| ATCCTTGTCAACTTCTGGAC+TGG | 0.369071 | 7_2:+56280419 | None:intergenic |
| TCCTCTTAAATTACCTCATC+AGG | 0.378875 | 7_2:+56280803 | None:intergenic |
| TAATGCTGCTGACACATTAG+AGG | 0.382091 | 7_2:-56281904 | Msa1063980:intron |
| ACCTTATTTGTTCATCCAAC+CGG | 0.394452 | 7_2:+56281286 | None:intergenic |
| TCAATTTGAAGAGAAGTTTG+AGG | 0.408550 | 7_2:-56280478 | Msa1063980:CDS |
| GATATTACTAATGTTCTTGA+AGG | 0.421983 | 7_2:-56281781 | Msa1063980:CDS |
| TCCTTGTCAACTTCTGGACT+GGG | 0.426039 | 7_2:+56280420 | None:intergenic |
| ACTAATGTTCTTGAAGGGAT+TGG | 0.429531 | 7_2:-56281775 | Msa1063980:CDS |
| ATGACAAAATGCAACAGAAC+TGG | 0.436250 | 7_2:-56282746 | Msa1063980:CDS |
| AATTGAAAATTTAACAATTG+AGG | 0.437163 | 7_2:-56281313 | Msa1063980:CDS |
| GACTATCCTGTATCTTCTCT+GGG | 0.438603 | 7_2:+56280698 | None:intergenic |
| TTCATAGCACGGTACCACTT+TGG | 0.475242 | 7_2:-56280837 | Msa1063980:intron |
| TATTCACCAATATTTGAGCC+AGG | 0.483329 | 7_2:+56282713 | None:intergenic |
| TAAATTACCTCATCAGGATC+AGG | 0.485605 | 7_2:+56280809 | None:intergenic |
| CTGCGGTCCCAAAAGATAAA+GGG | 0.500490 | 7_2:-56280389 | Msa1063980:CDS |
| AGGGAAACTAACCTGGAAGC+AGG | 0.501301 | 7_2:+56280974 | None:intergenic |
| TGTGTCTACAGGTGCAAAAG+AGG | 0.505867 | 7_2:-56281813 | Msa1063980:intron |
| ATATTACTAATGTTCTTGAA+GGG | 0.506571 | 7_2:-56281780 | Msa1063980:CDS |
| ACTCACGAAGTCGTGATTGT+TGG | 0.507659 | 7_2:+56280314 | None:intergenic |
| AACAATCACGACTTCGTGAG+TGG | 0.509503 | 7_2:-56280312 | Msa1063980:CDS |
| CTGTAAGCATCACCTCAGTC+TGG | 0.515241 | 7_2:-56280260 | Msa1063980:CDS |
| ATAGTCTTGAGAAGCACAAT+GGG | 0.518369 | 7_2:-56280681 | Msa1063980:CDS |
| ATTATCCCCAGAGAAGATAC+AGG | 0.527897 | 7_2:-56280704 | Msa1063980:CDS |
| AACAATTGAGGAACGCCGGT+TGG | 0.534246 | 7_2:-56281301 | Msa1063980:CDS |
| GTGCAGAGGCAAGATGGTGA+AGG | 0.537026 | 7_2:-56280354 | Msa1063980:CDS |
| TTCACCAATATTTGAGCCAG+GGG | 0.548468 | 7_2:+56282715 | None:intergenic |
| TAACAAGGTAAACATCCATT+GGG | 0.550555 | 7_2:+56280658 | None:intergenic |
| CTAACAAGGTAAACATCCAT+TGG | 0.555073 | 7_2:+56280657 | None:intergenic |
| ATTCACCAATATTTGAGCCA+GGG | 0.575795 | 7_2:+56282714 | None:intergenic |
| GAGAAGCACAATGGGCCCAA+TGG | 0.590253 | 7_2:-56280673 | Msa1063980:CDS |
| AGAACTGGAACTCAAACCCC+TGG | 0.591457 | 7_2:-56282731 | Msa1063980:CDS |
| TTAATAAAACAAGCAGAGGA+TGG | 0.593115 | 7_2:-56281942 | Msa1063980:CDS |
| GGGAGATGCAAGAAAGACTA+CGG | 0.594499 | 7_2:-56281170 | Msa1063980:CDS |
| AAAGCATACGGTACCTAACA+AGG | 0.595411 | 7_2:+56280643 | None:intergenic |
| ATAGAAGTGCAGAGGCAAGA+TGG | 0.599600 | 7_2:-56280360 | Msa1063980:CDS |
| GATAGTCTTGAGAAGCACAA+TGG | 0.600721 | 7_2:-56280682 | Msa1063980:CDS |
| CACTTTAATAAAACAAGCAG+AGG | 0.601125 | 7_2:-56281946 | Msa1063980:CDS |
| ATGCTTACAGCAACATCTGA+AGG | 0.604268 | 7_2:+56280273 | None:intergenic |
| ATCTGGAAGGAAAATCCTCT+AGG | 0.605318 | 7_2:-56282769 | None:intergenic |
| ATTTAACAATTGAGGAACGC+CGG | 0.605519 | 7_2:-56281305 | Msa1063980:CDS |
| GGGAAACTAACCTGGAAGCA+GGG | 0.607358 | 7_2:+56280975 | None:intergenic |
| TGCAGAGGCAAGATGGTGAA+GGG | 0.612592 | 7_2:-56280353 | Msa1063980:CDS |
| GTCTACAGGTGCAAAAGAGG+AGG | 0.622913 | 7_2:-56281810 | Msa1063980:intron |
| AGTTCAAGAACAGAATTCAG+TGG | 0.624987 | 7_2:-56281737 | Msa1063980:CDS |
| ACAATCACGACTTCGTGAGT+GGG | 0.632953 | 7_2:-56280311 | Msa1063980:CDS |
| GGAAGTACCTGATCCTGATG+AGG | 0.635583 | 7_2:-56280816 | Msa1063980:intron |
| GGAAGGAAATAGAAGTGCAG+AGG | 0.640012 | 7_2:-56280368 | Msa1063980:CDS |
| TTGTCAACTTCTGGACTGGG+TGG | 0.646660 | 7_2:+56280423 | None:intergenic |
| TATGAATATCCGCCAGACTG+AGG | 0.646882 | 7_2:+56280248 | None:intergenic |
| AGGATCAGGTACTTCCAAAG+TGG | 0.647576 | 7_2:+56280823 | None:intergenic |
| ACCCAGTCCAGAAGTTGACA+AGG | 0.647730 | 7_2:-56280421 | Msa1063980:CDS |
| GAGAAGTTTGAGGAGATCAA+CGG | 0.653388 | 7_2:-56280468 | Msa1063980:CDS |
| TAAGCATCACCTCAGTCTGG+CGG | 0.658447 | 7_2:-56280257 | Msa1063980:CDS |
| TTGTTGGTAAGATCTGAACT+AGG | 0.660286 | 7_2:+56280330 | None:intergenic |
| GGTCCCAAAAGATAAAGGGA+AGG | 0.697878 | 7_2:-56280385 | Msa1063980:CDS |
| ACTATCCTGTATCTTCTCTG+GGG | 0.718625 | 7_2:+56280699 | None:intergenic |
| TGACAAGGATCAATCAACTG+CGG | 0.752599 | 7_2:-56280406 | Msa1063980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATATTTTTTATATAAATT+TGG | - | chr7_2:56280449-56280468 | Msa1063980:CDS | 0.0% |
| !!! | TTATTTTCTTTGAATATATT+AGG | + | chr7_2:56280373-56280392 | None:intergenic | 10.0% |
| !!! | TTTTTAACAATATGATATAT+AGG | + | chr7_2:56281020-56281039 | None:intergenic | 10.0% |
| !!! | TTTTTGACTTATATAATTTA+TGG | - | chr7_2:56281616-56281635 | Msa1063980:intron | 10.0% |
| !!! | TCTTGTATATAAATTTATTT+TGG | - | chr7_2:56282115-56282134 | Msa1063980:intron | 10.0% |
| !!! | ATTTTTTATATAAATTTGGC+AGG | - | chr7_2:56280453-56280472 | Msa1063980:CDS | 15.0% |
| !! | TCATATTGTTAAAAACAAAT+AGG | - | chr7_2:56281025-56281044 | Msa1063980:intron | 15.0% |
| !! | AATTGAAAATTTAACAATTG+AGG | - | chr7_2:56281702-56281721 | Msa1063980:intron | 15.0% |
| !!! | TTTACTTTTTTTATTATTGC+AGG | - | chr7_2:56281824-56281843 | Msa1063980:intron | 15.0% |
| !!! | TTACTTTTTTTATTATTGCA+GGG | - | chr7_2:56281825-56281844 | Msa1063980:intron | 15.0% |
| !! | AAATTATGAACATAAAAGTA+CGG | + | chr7_2:56281941-56281960 | None:intergenic | 15.0% |
| !!! | AATTTATTTTGGATTTTAAC+TGG | - | chr7_2:56282126-56282145 | Msa1063980:intron | 15.0% |
| !! | ATTAGTTAATTGTTGATCAT+CGG | - | chr7_2:56280561-56280580 | Msa1063980:intron | 20.0% |
| !! | TTAAGTTAAACCAATGTTTA+GGG | - | chr7_2:56280858-56280877 | Msa1063980:intron | 20.0% |
| !! | CAGTAAAACATTTAAAGAAA+GGG | + | chr7_2:56280967-56280986 | None:intergenic | 20.0% |
| !! | ATATTACTAATGTTCTTGAA+GGG | - | chr7_2:56281235-56281254 | Msa1063980:intron | 20.0% |
| !!! | CTTGAACTTTTTTTTCTATA+AGG | + | chr7_2:56281266-56281285 | None:intergenic | 20.0% |
| !!! | GTAAAGCATACTTTTTTATT+TGG | - | chr7_2:56281574-56281593 | Msa1063980:intron | 20.0% |
| !! | TAATAGATCCTTATAAATGT+TGG | - | chr7_2:56281643-56281662 | Msa1063980:intron | 20.0% |
| !!! | ATTTTTCCTTAATCCATATT+TGG | - | chr7_2:56281906-56281925 | Msa1063980:CDS | 20.0% |
| !!! | TTTTTCCTTAATCCATATTT+GGG | - | chr7_2:56281907-56281926 | Msa1063980:CDS | 20.0% |
| !! | TTCATTGTAATTCATAGATA+GGG | + | chr7_2:56282063-56282082 | None:intergenic | 20.0% |
| !! | ATTCATTGTAATTCATAGAT+AGG | + | chr7_2:56282064-56282083 | None:intergenic | 20.0% |
| !!! | TTACAATGAATATTTTGATG+TGG | - | chr7_2:56282073-56282092 | Msa1063980:intron | 20.0% |
| !! | AATTTATATACAAGAAGCAA+AGG | + | chr7_2:56282110-56282129 | None:intergenic | 20.0% |
| !! | TTTTCGAAACTTTGTTAAGT+AGG | - | chr7_2:56280328-56280347 | Msa1063980:CDS | 25.0% |
| !! | AATAAGTGTAGCCAATATTT+TGG | - | chr7_2:56280388-56280407 | Msa1063980:CDS | 25.0% |
| ! | CTAATCAAAACTGACAAATT+AGG | + | chr7_2:56280546-56280565 | None:intergenic | 25.0% |
| ! | CAATTTACATTTAGTTAGGA+GGG | + | chr7_2:56280784-56280803 | None:intergenic | 25.0% |
| ! | GTTAAGTTAAACCAATGTTT+AGG | - | chr7_2:56280857-56280876 | Msa1063980:intron | 25.0% |
| ! | TAAGTTAAACCAATGTTTAG+GGG | - | chr7_2:56280859-56280878 | Msa1063980:intron | 25.0% |
| ! | CCAGTAAAACATTTAAAGAA+AGG | + | chr7_2:56280968-56280987 | None:intergenic | 25.0% |
| !! | CCTTTCTTTAAATGTTTTAC+TGG | - | chr7_2:56280965-56280984 | Msa1063980:intron | 25.0% |
| ! | GATATTACTAATGTTCTTGA+AGG | - | chr7_2:56281234-56281253 | Msa1063980:intron | 25.0% |
| !!! | GTAAAAGTGTTTCAACATTT+TGG | + | chr7_2:56281351-56281370 | None:intergenic | 25.0% |
| ! | TAAACTAGCAAAACTATCAT+CGG | + | chr7_2:56281426-56281445 | None:intergenic | 25.0% |
| !!! | GAAGGATTCATTTTTATCTT+TGG | - | chr7_2:56281454-56281473 | Msa1063980:intron | 25.0% |
| ! | ACATAAATGATTTACAGATC+AGG | + | chr7_2:56281540-56281559 | None:intergenic | 25.0% |
| ! | ATCAAACACCAACATTTATA+AGG | + | chr7_2:56281654-56281673 | None:intergenic | 25.0% |
| ! | ATATACTCTTACTAGACAAA+AGG | + | chr7_2:56281803-56281822 | None:intergenic | 25.0% |
| CTAGTTGTCAACCAAAATAT+TGG | + | chr7_2:56280402-56280421 | None:intergenic | 30.0% | |
| TAGTGTCATGAAAAAAAGGT+TGG | + | chr7_2:56280672-56280691 | None:intergenic | 30.0% | |
| GACTTAGTGTCATGAAAAAA+AGG | + | chr7_2:56280676-56280695 | None:intergenic | 30.0% | |
| CCAATTTACATTTAGTTAGG+AGG | + | chr7_2:56280785-56280804 | None:intergenic | 30.0% | |
| CCTCCTAACTAAATGTAAAT+TGG | - | chr7_2:56280782-56280801 | Msa1063980:intron | 30.0% | |
| CCACCAATTTACATTTAGTT+AGG | + | chr7_2:56280788-56280807 | None:intergenic | 30.0% | |
| CCTAACTAAATGTAAATTGG+TGG | - | chr7_2:56280785-56280804 | Msa1063980:intron | 30.0% | |
| AAGTTAAACCAATGTTTAGG+GGG | - | chr7_2:56280860-56280879 | Msa1063980:intron | 30.0% | |
| CACTTTAATAAAACAAGCAG+AGG | - | chr7_2:56281069-56281088 | Msa1063980:intron | 30.0% | |
| TTAATAAAACAAGCAGAGGA+TGG | - | chr7_2:56281073-56281092 | Msa1063980:intron | 30.0% | |
| TGGTCAATTATCAAAGGAAT+TGG | + | chr7_2:56281373-56281392 | None:intergenic | 30.0% | |
| ! | AATTCCTTTGATAATTGACC+AGG | - | chr7_2:56281372-56281391 | Msa1063980:intron | 30.0% |
| ! | ATTCCTTTGATAATTGACCA+GGG | - | chr7_2:56281373-56281392 | Msa1063980:intron | 30.0% |
| !! | TGATAGTTTTGCTAGTTTAC+AGG | - | chr7_2:56281427-56281446 | Msa1063980:intron | 30.0% |
| !! | TGTTTTTGTTTCTCATATGC+AGG | - | chr7_2:56281675-56281694 | Msa1063980:intron | 30.0% |
| TTGGATGAACAAATAAGGTT+TGG | - | chr7_2:56281733-56281752 | Msa1063980:intron | 30.0% | |
| TGGATGAACAAATAAGGTTT+GGG | - | chr7_2:56281734-56281753 | Msa1063980:intron | 30.0% | |
| ! | AATGACCCAAATATGGATTA+AGG | + | chr7_2:56281915-56281934 | None:intergenic | 30.0% |
| TAATCTCTTTCCACTCTTAA+AGG | - | chr7_2:56281981-56282000 | Msa1063980:intron | 30.0% | |
| ! | CAAAAAGAAACCTTTAAGAG+TGG | + | chr7_2:56281994-56282013 | None:intergenic | 30.0% |
| ! | CAAATTCCCTTTTTCCTATT+AGG | - | chr7_2:56282282-56282301 | Msa1063980:intron | 30.0% |
| TAACAAGGTAAACATCCATT+GGG | + | chr7_2:56282360-56282379 | None:intergenic | 30.0% | |
| ! | TTTGCTATCATTTGCTTCAA+AGG | - | chr7_2:56282403-56282422 | Msa1063980:intron | 30.0% |
| TCTCTTCAAATTGACTACAA+TGG | + | chr7_2:56282531-56282550 | None:intergenic | 30.0% | |
| TCAATTTGAAGAGAAGTTTG+AGG | - | chr7_2:56282537-56282556 | Msa1063980:intron | 30.0% | |
| ! | TTTCCTTCCCTTTATCTTTT+GGG | + | chr7_2:56282636-56282655 | None:intergenic | 30.0% |
| ! | ATTTCCTTCCCTTTATCTTT+TGG | + | chr7_2:56282637-56282656 | None:intergenic | 30.0% |
| ATGACAAAATGCAACAGAAC+TGG | - | chr7_2:56280269-56280288 | Msa1063980:CDS | 35.0% | |
| ATTCACCAATATTTGAGCCA+GGG | + | chr7_2:56280304-56280323 | None:intergenic | 35.0% | |
| TATTCACCAATATTTGAGCC+AGG | + | chr7_2:56280305-56280324 | None:intergenic | 35.0% | |
| AGTTAATTGTTGATCATCGG+TGG | - | chr7_2:56280564-56280583 | Msa1063980:intron | 35.0% | |
| GGTGGAGGTTATTTGAAAAA+GGG | + | chr7_2:56280651-56280670 | None:intergenic | 35.0% | |
| TGGTGGAGGTTATTTGAAAA+AGG | + | chr7_2:56280652-56280671 | None:intergenic | 35.0% | |
| TGTCATGAAAAAAAGGTTGG+TGG | + | chr7_2:56280669-56280688 | None:intergenic | 35.0% | |
| ! | ACTAAATGTAAATTGGTGGC+AGG | - | chr7_2:56280789-56280808 | Msa1063980:intron | 35.0% |
| AATGGCTAAAACAGGTTTAG+TGG | - | chr7_2:56280886-56280905 | Msa1063980:intron | 35.0% | |
| ATGGCTAAAACAGGTTTAGT+GGG | - | chr7_2:56280887-56280906 | Msa1063980:intron | 35.0% | |
| TCCGAAATGTGTGAAAGTAA+TGG | - | chr7_2:56280914-56280933 | Msa1063980:intron | 35.0% | |
| CCCATTACTTTCACACATTT+CGG | + | chr7_2:56280918-56280937 | None:intergenic | 35.0% | |
| CCGAAATGTGTGAAAGTAAT+GGG | - | chr7_2:56280915-56280934 | Msa1063980:intron | 35.0% | |
| CGAAATGTGTGAAAGTAATG+GGG | - | chr7_2:56280916-56280935 | Msa1063980:intron | 35.0% | |
| GAAATGTGTGAAAGTAATGG+GGG | - | chr7_2:56280917-56280936 | Msa1063980:intron | 35.0% | |
| TACTGGTGAGTAAAGTTTGT+AGG | - | chr7_2:56280982-56281001 | Msa1063980:intron | 35.0% | |
| !! | TGATGAGCTTTTTAGTCAAC+AGG | + | chr7_2:56281051-56281070 | None:intergenic | 35.0% |
| AAAGATTCCTTGCTCATTAC+TGG | - | chr7_2:56281153-56281172 | Msa1063980:CDS | 35.0% | |
| AAACATTCCAGTAATGAGCA+AGG | + | chr7_2:56281163-56281182 | None:intergenic | 35.0% | |
| ACTAATGTTCTTGAAGGGAT+TGG | - | chr7_2:56281240-56281259 | Msa1063980:intron | 35.0% | |
| AGTTCAAGAACAGAATTCAG+TGG | - | chr7_2:56281278-56281297 | Msa1063980:intron | 35.0% | |
| !! | GTTTTGCTAGTTTACAGGTT+AGG | - | chr7_2:56281432-56281451 | Msa1063980:intron | 35.0% |
| ATTTAACAATTGAGGAACGC+CGG | - | chr7_2:56281710-56281729 | Msa1063980:intron | 35.0% | |
| ! | ACCTTATTTGTTCATCCAAC+CGG | + | chr7_2:56281732-56281751 | None:intergenic | 35.0% |
| ATGCAACAAAGAATCAGCAA+AGG | + | chr7_2:56281766-56281785 | None:intergenic | 35.0% | |
| ! | AAGGTTTCTTTTTGTCACTG+AGG | - | chr7_2:56282000-56282019 | Msa1063980:intron | 35.0% |
| AGAATGAAACCTTCATAGCA+CGG | - | chr7_2:56282167-56282186 | Msa1063980:intron | 35.0% | |
| TAAATTACCTCATCAGGATC+AGG | + | chr7_2:56282209-56282228 | None:intergenic | 35.0% | |
| TCCTGATGAGGTAATTTAAG+AGG | - | chr7_2:56282211-56282230 | Msa1063980:intron | 35.0% | |
| TCCTCTTAAATTACCTCATC+AGG | + | chr7_2:56282215-56282234 | None:intergenic | 35.0% | |
| CAACAGCCTAATAGGAAAAA+GGG | + | chr7_2:56282291-56282310 | None:intergenic | 35.0% | |
| TCAACAGCCTAATAGGAAAA+AGG | + | chr7_2:56282292-56282311 | None:intergenic | 35.0% | |
| ! | ATAGTCTTGAGAAGCACAAT+GGG | - | chr7_2:56282334-56282353 | Msa1063980:intron | 35.0% |
| CTAACAAGGTAAACATCCAT+TGG | + | chr7_2:56282361-56282380 | None:intergenic | 35.0% | |
| CAATGGATGTTTACCTTGTT+AGG | - | chr7_2:56282359-56282378 | Msa1063980:intron | 35.0% | |
| !! | TTAGGTACCGTATGCTTTTT+GGG | - | chr7_2:56282377-56282396 | Msa1063980:intron | 35.0% |
| ! | CAAAACACCCAAAAAGCATA+CGG | + | chr7_2:56282387-56282406 | None:intergenic | 35.0% |
| CTATCATTTGCTTCAAAGGT+CGG | - | chr7_2:56282407-56282426 | Msa1063980:intron | 35.0% | |
| ! | TTGTTGGTAAGATCTGAACT+AGG | + | chr7_2:56282688-56282707 | None:intergenic | 35.0% |
| ! | GTTGCATTTTGTCATCCTAG+AGG | + | chr7_2:56280264-56280283 | None:intergenic | 40.0% |
| TTCACCAATATTTGAGCCAG+GGG | + | chr7_2:56280303-56280322 | None:intergenic | 40.0% | |
| AATGAGCTGTCATATCGACA+TGG | + | chr7_2:56280515-56280534 | None:intergenic | 40.0% | |
| TGTCGATATGACAGCTCATT+AGG | - | chr7_2:56280515-56280534 | Msa1063980:intron | 40.0% | |
| !! | CATGAAAAAAAGGTTGGTGG+AGG | + | chr7_2:56280666-56280685 | None:intergenic | 40.0% |
| TCAACTTGAACCAGAGTTGA+GGG | + | chr7_2:56280708-56280727 | None:intergenic | 40.0% | |
| TTCAACTTGAACCAGAGTTG+AGG | + | chr7_2:56280709-56280728 | None:intergenic | 40.0% | |
| CCATTTAACCCCCTAAACAT+TGG | + | chr7_2:56280871-56280890 | None:intergenic | 40.0% | |
| CCAATGTTTAGGGGGTTAAA+TGG | - | chr7_2:56280868-56280887 | Msa1063980:intron | 40.0% | |
| TAATGCTGCTGACACATTAG+AGG | - | chr7_2:56281111-56281130 | Msa1063980:intron | 40.0% | |
| TGAGCAAGGAATCTTTAGAC+AGG | + | chr7_2:56281149-56281168 | None:intergenic | 40.0% | |
| ! | CATGAAGCTTTTGTGTCTAC+AGG | - | chr7_2:56281191-56281210 | Msa1063980:intron | 40.0% |
| AGAACAGAATTCAGTGGAAG+TGG | - | chr7_2:56281284-56281303 | Msa1063980:intron | 40.0% | |
| GAACAGAATTCAGTGGAAGT+GGG | - | chr7_2:56281285-56281304 | Msa1063980:intron | 40.0% | |
| TGCTGGATGTTTCAAAACCA+GGG | - | chr7_2:56281396-56281415 | Msa1063980:intron | 40.0% | |
| ! | TGCTAGTTTACAGGTTAGGA+AGG | - | chr7_2:56281436-56281455 | Msa1063980:intron | 40.0% |
| ACGGCAAAATGACCCAAATA+TGG | + | chr7_2:56281922-56281941 | None:intergenic | 40.0% | |
| CATAGATAGGGAAACTAACC+TGG | + | chr7_2:56282051-56282070 | None:intergenic | 40.0% | |
| GAAGGTTTCATTCTGGCAAT+AGG | + | chr7_2:56282161-56282180 | None:intergenic | 40.0% | |
| GTGCTATGAAGGTTTCATTC+TGG | + | chr7_2:56282168-56282187 | None:intergenic | 40.0% | |
| GGGATAATCAACAGCCTAAT+AGG | + | chr7_2:56282299-56282318 | None:intergenic | 40.0% | |
| ATTATCCCCAGAGAAGATAC+AGG | - | chr7_2:56282311-56282330 | Msa1063980:intron | 40.0% | |
| ACTATCCTGTATCTTCTCTG+GGG | + | chr7_2:56282319-56282338 | None:intergenic | 40.0% | |
| GACTATCCTGTATCTTCTCT+GGG | + | chr7_2:56282320-56282339 | None:intergenic | 40.0% | |
| AGACTATCCTGTATCTTCTC+TGG | + | chr7_2:56282321-56282340 | None:intergenic | 40.0% | |
| ! | GATAGTCTTGAGAAGCACAA+TGG | - | chr7_2:56282333-56282352 | Msa1063980:intron | 40.0% |
| AAAGCATACGGTACCTAACA+AGG | + | chr7_2:56282375-56282394 | None:intergenic | 40.0% | |
| !! | GTTAGGTACCGTATGCTTTT+TGG | - | chr7_2:56282376-56282395 | Msa1063980:intron | 40.0% |
| CGGTCATTTAGCTATTGCAA+TGG | - | chr7_2:56282427-56282446 | Msa1063980:intron | 40.0% | |
| TCAAGCATCATCGCTTCATA+TGG | + | chr7_2:56282457-56282476 | None:intergenic | 40.0% | |
| GACTACAATGGCAGTGAAAA+GGG | + | chr7_2:56282519-56282538 | None:intergenic | 40.0% | |
| TGACTACAATGGCAGTGAAA+AGG | + | chr7_2:56282520-56282539 | None:intergenic | 40.0% | |
| GAGAAGTTTGAGGAGATCAA+CGG | - | chr7_2:56282547-56282566 | Msa1063980:intron | 40.0% | |
| GATTGATCCTTGTCAACTTC+TGG | + | chr7_2:56282604-56282623 | None:intergenic | 40.0% | |
| TGACAAGGATCAATCAACTG+CGG | - | chr7_2:56282609-56282628 | Msa1063980:intron | 40.0% | |
| ATGCTTACAGCAACATCTGA+AGG | + | chr7_2:56282745-56282764 | None:intergenic | 40.0% | |
| CAAACCCCTGGCTCAAATAT+TGG | - | chr7_2:56280296-56280315 | Msa1063980:CDS | 45.0% | |
| AATTTGGCAGGTTCTCCTTC+AGG | - | chr7_2:56280465-56280484 | Msa1063980:CDS | 45.0% | |
| GGGGTGAGATTATTTCCTGA+AGG | + | chr7_2:56280483-56280502 | None:intergenic | 45.0% | |
| AAATAATCTCACCCCTGCTC+TGG | - | chr7_2:56280488-56280507 | Msa1063980:intron | 45.0% | |
| GGGGGTTAAATGGCTAAAAC+AGG | - | chr7_2:56280878-56280897 | Msa1063980:intron | 45.0% | |
| TGTGTCTACAGGTGCAAAAG+AGG | - | chr7_2:56281202-56281221 | Msa1063980:intron | 45.0% | |
| GCACCCTGGTCAATTATCAA+AGG | + | chr7_2:56281379-56281398 | None:intergenic | 45.0% | |
| ! | TTGATAATTGACCAGGGTGC+TGG | - | chr7_2:56281379-56281398 | Msa1063980:intron | 45.0% |
| !!! | TTTTGAAACATCCAGCACCC+TGG | + | chr7_2:56281393-56281412 | None:intergenic | 45.0% |
| GTGCTGGATGTTTCAAAACC+AGG | - | chr7_2:56281395-56281414 | Msa1063980:intron | 45.0% | |
| GCTGGATGTTTCAAAACCAG+GGG | - | chr7_2:56281397-56281416 | Msa1063980:intron | 45.0% | |
| GCCGGTTGGATGAACAAATA+AGG | - | chr7_2:56281728-56281747 | Msa1063980:intron | 45.0% | |
| GGGAGATGCAAGAAAGACTA+CGG | - | chr7_2:56281845-56281864 | Msa1063980:intron | 45.0% | |
| AAAGTGGTACCGTGCTATGA+AGG | + | chr7_2:56282179-56282198 | None:intergenic | 45.0% | |
| TTCATAGCACGGTACCACTT+TGG | - | chr7_2:56282178-56282197 | Msa1063980:intron | 45.0% | |
| AGGATCAGGTACTTCCAAAG+TGG | + | chr7_2:56282195-56282214 | None:intergenic | 45.0% | |
| ! | TCTGGACTGGGTGGAAATTT+GGG | + | chr7_2:56282586-56282605 | None:intergenic | 45.0% |
| ! | TTCTGGACTGGGTGGAAATT+TGG | + | chr7_2:56282587-56282606 | None:intergenic | 45.0% |
| TCCTTGTCAACTTCTGGACT+GGG | + | chr7_2:56282598-56282617 | None:intergenic | 45.0% | |
| ATCCTTGTCAACTTCTGGAC+TGG | + | chr7_2:56282599-56282618 | None:intergenic | 45.0% | |
| ACTGCGGTCCCAAAAGATAA+AGG | - | chr7_2:56282625-56282644 | Msa1063980:intron | 45.0% | |
| CTGCGGTCCCAAAAGATAAA+GGG | - | chr7_2:56282626-56282645 | Msa1063980:intron | 45.0% | |
| GGTCCCAAAAGATAAAGGGA+AGG | - | chr7_2:56282630-56282649 | Msa1063980:intron | 45.0% | |
| ! | GGAAGGAAATAGAAGTGCAG+AGG | - | chr7_2:56282647-56282666 | Msa1063980:intron | 45.0% |
| ! | ATAGAAGTGCAGAGGCAAGA+TGG | - | chr7_2:56282655-56282674 | Msa1063980:intron | 45.0% |
| ACTCACGAAGTCGTGATTGT+TGG | + | chr7_2:56282704-56282723 | None:intergenic | 45.0% | |
| AACAATCACGACTTCGTGAG+TGG | - | chr7_2:56282703-56282722 | Msa1063980:intron | 45.0% | |
| ACAATCACGACTTCGTGAGT+GGG | - | chr7_2:56282704-56282723 | Msa1063980:intron | 45.0% | |
| AGAACTGGAACTCAAACCCC+TGG | - | chr7_2:56280284-56280303 | Msa1063980:CDS | 50.0% | |
| TATCGACATGGACCAGAGCA+GGG | + | chr7_2:56280503-56280522 | None:intergenic | 50.0% | |
| ATATCGACATGGACCAGAGC+AGG | + | chr7_2:56280504-56280523 | None:intergenic | 50.0% | |
| CACTTAACCTCCCTCAACTC+TGG | - | chr7_2:56280695-56280714 | Msa1063980:CDS | 50.0% | |
| ACTTGAACCAGAGTTGAGGG+AGG | + | chr7_2:56280705-56280724 | None:intergenic | 50.0% | |
| GTCTACAGGTGCAAAAGAGG+AGG | - | chr7_2:56281205-56281224 | Msa1063980:intron | 50.0% | |
| GGATGTTTCAAAACCAGGGG+AGG | - | chr7_2:56281400-56281419 | Msa1063980:intron | 50.0% | |
| AACAATTGAGGAACGCCGGT+TGG | - | chr7_2:56281714-56281733 | Msa1063980:intron | 50.0% | |
| AAAGAACTTGCCCTGCTTCC+AGG | - | chr7_2:56282030-56282049 | Msa1063980:intron | 50.0% | |
| GGGAAACTAACCTGGAAGCA+GGG | + | chr7_2:56282043-56282062 | None:intergenic | 50.0% | |
| AGGGAAACTAACCTGGAAGC+AGG | + | chr7_2:56282044-56282063 | None:intergenic | 50.0% | |
| !! | GGAAGTACCTGATCCTGATG+AGG | - | chr7_2:56282199-56282218 | Msa1063980:intron | 50.0% |
| ! | TTGTCAACTTCTGGACTGGG+TGG | + | chr7_2:56282595-56282614 | None:intergenic | 50.0% |
| ACCCAGTCCAGAAGTTGACA+AGG | - | chr7_2:56282594-56282613 | Msa1063980:intron | 50.0% | |
| TGCAGAGGCAAGATGGTGAA+GGG | - | chr7_2:56282662-56282681 | Msa1063980:intron | 50.0% | |
| CTGTAAGCATCACCTCAGTC+TGG | - | chr7_2:56282755-56282774 | Msa1063980:exon | 50.0% | |
| TAAGCATCACCTCAGTCTGG+CGG | - | chr7_2:56282758-56282777 | Msa1063980:exon | 50.0% | |
| ATCGACATGGACCAGAGCAG+GGG | + | chr7_2:56280502-56280521 | None:intergenic | 55.0% | |
| AAACTATCATCGGCCTCCCC+TGG | + | chr7_2:56281416-56281435 | None:intergenic | 55.0% | |
| ! | GAGAAGCACAATGGGCCCAA+TGG | - | chr7_2:56282342-56282361 | Msa1063980:intron | 55.0% |
| GTGCAGAGGCAAGATGGTGA+AGG | - | chr7_2:56282661-56282680 | Msa1063980:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 56280254 | 56282783 | 56280254 | ID=Msa1063980;Name=Msa1063980 |
| chr7_2 | mRNA | 56280254 | 56282783 | 56280254 | ID=Msa1063980-mRNA-1;Parent=Msa1063980;Name=Msa1063980-mRNA-1;_AED=0.26;_eAED=0.26;_QI=15|0.62|0.66|1|0.75|0.77|9|0|246 |
| chr7_2 | exon | 56280254 | 56280500 | 56280254 | ID=Msa1063980-mRNA-1:exon:10607;Parent=Msa1063980-mRNA-1 |
| chr7_2 | exon | 56280657 | 56280733 | 56280657 | ID=Msa1063980-mRNA-1:exon:10606;Parent=Msa1063980-mRNA-1 |
| chr7_2 | exon | 56280817 | 56280852 | 56280817 | ID=Msa1063980-mRNA-1:exon:10605;Parent=Msa1063980-mRNA-1 |
| chr7_2 | exon | 56280986 | 56281034 | 56280986 | ID=Msa1063980-mRNA-1:exon:10604;Parent=Msa1063980-mRNA-1 |
| chr7_2 | exon | 56281141 | 56281191 | 56281141 | ID=Msa1063980-mRNA-1:exon:10603;Parent=Msa1063980-mRNA-1 |
| chr7_2 | exon | 56281288 | 56281340 | 56281288 | ID=Msa1063980-mRNA-1:exon:10602;Parent=Msa1063980-mRNA-1 |
| chr7_2 | exon | 56281735 | 56281824 | 56281735 | ID=Msa1063980-mRNA-1:exon:10601;Parent=Msa1063980-mRNA-1 |
| chr7_2 | exon | 56281905 | 56281990 | 56281905 | ID=Msa1063980-mRNA-1:exon:10600;Parent=Msa1063980-mRNA-1 |
| chr7_2 | exon | 56282720 | 56282783 | 56282720 | ID=Msa1063980-mRNA-1:exon:10599;Parent=Msa1063980-mRNA-1 |
| chr7_2 | five_prime_UTR | 56282769 | 56282783 | 56282769 | ID=Msa1063980-mRNA-1:five_prime_utr;Parent=Msa1063980-mRNA-1 |
| chr7_2 | CDS | 56282720 | 56282768 | 56282720 | ID=Msa1063980-mRNA-1:cds;Parent=Msa1063980-mRNA-1 |
| chr7_2 | CDS | 56281905 | 56281990 | 56281905 | ID=Msa1063980-mRNA-1:cds;Parent=Msa1063980-mRNA-1 |
| chr7_2 | CDS | 56281735 | 56281824 | 56281735 | ID=Msa1063980-mRNA-1:cds;Parent=Msa1063980-mRNA-1 |
| chr7_2 | CDS | 56281288 | 56281340 | 56281288 | ID=Msa1063980-mRNA-1:cds;Parent=Msa1063980-mRNA-1 |
| chr7_2 | CDS | 56281141 | 56281191 | 56281141 | ID=Msa1063980-mRNA-1:cds;Parent=Msa1063980-mRNA-1 |
| chr7_2 | CDS | 56280986 | 56281034 | 56280986 | ID=Msa1063980-mRNA-1:cds;Parent=Msa1063980-mRNA-1 |
| chr7_2 | CDS | 56280817 | 56280852 | 56280817 | ID=Msa1063980-mRNA-1:cds;Parent=Msa1063980-mRNA-1 |
| chr7_2 | CDS | 56280657 | 56280733 | 56280657 | ID=Msa1063980-mRNA-1:cds;Parent=Msa1063980-mRNA-1 |
| chr7_2 | CDS | 56280254 | 56280500 | 56280254 | ID=Msa1063980-mRNA-1:cds;Parent=Msa1063980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
