AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1024660

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 58 sgRNAs with CRISPR-Local

Find 366 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGAGTTCTTTGGGATTAC+AGG 0.204503 7_1:+54263341 None:intergenic
CAATACTTCAAAGAGTTCTT+TGG 0.259787 7_1:+54263332 None:intergenic
TTGTCATTTCCCATGCTTGC+AGG 0.277779 7_1:+54262906 None:intergenic
ATCAAAACCATTGGTGGGTT+TGG 0.279595 7_1:-54263226 Msa1024660:three_prime_UTR
GTATTGATCTGCAGGACTTC+TGG 0.301788 7_1:-54263315 Msa1024660:three_prime_UTR
ATGTCTGTAGCTACTGTTCA+TGG 0.333467 7_1:+54262803 None:intergenic
AATACTTCAAAGAGTTCTTT+GGG 0.351377 7_1:+54263333 None:intergenic
AAACCCTAGCCGATCCTTCA+TGG 0.363342 7_1:-54269054 Msa1024660:exon
ATGAAGGATCGGCTAGGGTT+TGG 0.385918 7_1:+54269056 None:intergenic
CCATTCACATCAACATCAAA+AGG 0.386714 7_1:+54262681 None:intergenic
AACTCTTTCAAGTATTGATC+TGG 0.390208 7_1:-54263368 Msa1024660:CDS
CACTGTTCACAGTTGCTAGA+AGG 0.420795 7_1:+54262741 None:intergenic
TGAAGTGTGCATAGTCTCAT+AGG 0.444255 7_1:-54263052 Msa1024660:three_prime_UTR
ATGAGACTATGCACACTTCA+AGG 0.449441 7_1:+54263055 None:intergenic
TTGGAGCGTGAGAGAGAGAA+AGG 0.454147 7_1:-54263095 Msa1024660:three_prime_UTR
ATGAAATAACACGACGGTAT+CGG 0.469603 7_1:+54269024 None:intergenic
TTCAAGGCTCTTTCTCTCCA+TGG 0.471238 7_1:+54263071 None:intergenic
TCTTTGAAGTATTGATCTGC+AGG 0.476375 7_1:-54263323 Msa1024660:three_prime_UTR
TTCATCATCAAAACCATTGG+TGG 0.484147 7_1:-54263232 Msa1024660:three_prime_UTR
TGACTTTAAATACTACTTGA+GGG 0.484582 7_1:-54263131 Msa1024660:three_prime_UTR
TGCTTAATTTCAGGCAGCAA+AGG 0.489803 7_1:-54268317 Msa1024660:intron
CATAGTCTCATAGGTAATGT+AGG 0.503260 7_1:-54263043 Msa1024660:three_prime_UTR
ATACCCACGGAGAAGAATTC+CGG 0.529250 7_1:+54268906 None:intergenic
AGTTTCTAGACCTGCAAGCA+TGG 0.530318 7_1:-54262916 Msa1024660:three_prime_UTR
TACTACTTGAGGGAAGAGAA+AGG 0.530718 7_1:-54263121 Msa1024660:three_prime_UTR
AAGGATCGGCTAGGGTTTGG+AGG 0.531070 7_1:+54269059 None:intergenic
CAAAATGTGATGGCAAGGCA+AGG 0.536865 7_1:-54263158 Msa1024660:three_prime_UTR
TTCAATTAGCATAAGAAACA+AGG 0.537855 7_1:+54263292 None:intergenic
TTGACTTTAAATACTACTTG+AGG 0.541259 7_1:-54263132 Msa1024660:three_prime_UTR
CATTCACATCAACATCAAAA+GGG 0.543715 7_1:+54262682 None:intergenic
ACTACTTGAGGGAAGAGAAA+GGG 0.547541 7_1:-54263120 Msa1024660:three_prime_UTR
TCATCATCAAAACCATTGGT+GGG 0.549464 7_1:-54263231 Msa1024660:three_prime_UTR
TGCAGATCAATAATTTCAAG+AGG 0.551282 7_1:+54263267 None:intergenic
GGTCGGAGGCCATGAAGGAT+CGG 0.552187 7_1:+54269045 None:intergenic
AAATTCATCATCAAAACCAT+TGG 0.557399 7_1:-54263235 Msa1024660:three_prime_UTR
AGGCCATGAAGGATCGGCTA+GGG 0.559745 7_1:+54269051 None:intergenic
AATTCCGGTGCGGTGGTCGA+TGG 0.563463 7_1:+54268921 None:intergenic
TGGAGCGTGAGAGAGAGAAA+GGG 0.566861 7_1:-54263094 Msa1024660:three_prime_UTR
GTTTCTAGACCTGCAAGCAT+GGG 0.568659 7_1:-54262915 Msa1024660:three_prime_UTR
TGAGGGAAGAGAAAGGGCAT+TGG 0.575899 7_1:-54263114 Msa1024660:three_prime_UTR
AAATGACAAAATAGTTGTCA+CGG 0.576029 7_1:-54262892 Msa1024660:three_prime_UTR
GTATCGGTCGGAGGCCATGA+AGG 0.577862 7_1:+54269040 None:intergenic
GTGAGAGAGAGAAAGGGCCA+TGG 0.581595 7_1:-54263088 Msa1024660:three_prime_UTR
GTCACCATCGACCACCGCAC+CGG 0.589367 7_1:-54268925 Msa1024660:CDS
TGTCACGGAAATGACATGAA+TGG 0.591506 7_1:-54262877 Msa1024660:three_prime_UTR
GCACCGGAATTCTTCTCCGT+GGG 0.593552 7_1:-54268909 Msa1024660:intron
TCTTTCAAGTATTGATCTGG+AGG 0.595258 7_1:-54263365 Msa1024660:CDS
GGAGAAGAATTCCGGTGCGG+TGG 0.597879 7_1:+54268914 None:intergenic
TGCTGCAAAATGTGATGGCA+AGG 0.600097 7_1:-54263163 Msa1024660:three_prime_UTR
GAGGCCATGAAGGATCGGCT+AGG 0.603679 7_1:+54269050 None:intergenic
CGCACCGGAATTCTTCTCCG+TGG 0.604759 7_1:-54268910 Msa1024660:CDS
ATATTTGCTGCAAAATGTGA+TGG 0.629195 7_1:-54263168 Msa1024660:three_prime_UTR
AACACGACGGTATCGGTCGG+AGG 0.648325 7_1:+54269031 None:intergenic
AAATAAACCAATCAATCCCA+CGG 0.653017 7_1:+54268962 None:intergenic
AATAACACGACGGTATCGGT+CGG 0.686515 7_1:+54269028 None:intergenic
TTATGATGCAGAGATGTCAG+TGG 0.721555 7_1:-54263412 Msa1024660:intron
CACGGAGAAGAATTCCGGTG+CGG 0.742215 7_1:+54268911 None:intergenic
TGAAGAATGAAATAACACGA+CGG 0.754863 7_1:+54269018 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATAAAATAAATAAAAAA+TGG + chr7_1:54267530-54267549 None:intergenic 0.0%
!!! TTTTTAAAAATACCAAAAAA+TGG + chr7_1:54267011-54267030 None:intergenic 10.0%
!!! TTTTTTTTAAACAAAAATTG+TGG - chr7_1:54267075-54267094 Msa1024660:intron 10.0%
!! AAAAAAAAAAAATGTAAATC+TGG - chr7_1:54267165-54267184 Msa1024660:intron 10.0%
!!! GAATATTAATTTTTTTTTGA+AGG - chr7_1:54267414-54267433 Msa1024660:intron 10.0%
!!! TATTTTTCAAGGTATTAAAT+TGG - chr7_1:54264095-54264114 Msa1024660:intron 15.0%
!!! ATTTTTTTTATGACGAAAAA+GGG + chr7_1:54264449-54264468 None:intergenic 15.0%
!!! TATTTTTTTTATGACGAAAA+AGG + chr7_1:54264450-54264469 None:intergenic 15.0%
!!! TTTTCGTCATAAAAAAAATA+TGG - chr7_1:54264450-54264469 Msa1024660:intron 15.0%
!! AATATCAAACTTCATAATAT+AGG - chr7_1:54264819-54264838 Msa1024660:intron 15.0%
!! ATTTATTAACTTCTTGAATA+TGG - chr7_1:54265007-54265026 Msa1024660:intron 15.0%
!! AATATAGTAAAAAAAAAGGA+GGG + chr7_1:54266777-54266796 None:intergenic 15.0%
!! TAATATAGTAAAAAAAAAGG+AGG + chr7_1:54266778-54266797 None:intergenic 15.0%
!! GCATAATATAGTAAAAAAAA+AGG + chr7_1:54266781-54266800 None:intergenic 15.0%
!!! TTTTTTTTACTATATTATGC+AGG - chr7_1:54266781-54266800 Msa1024660:intron 15.0%
!!! TTTTTTTACTATATTATGCA+GGG - chr7_1:54266782-54266801 Msa1024660:intron 15.0%
!! AATGGAACAAAATAAATAAA+TGG + chr7_1:54266993-54267012 None:intergenic 15.0%
!!! ATTTATTTTGTTCCATTTTT+TGG - chr7_1:54266996-54267015 Msa1024660:intron 15.0%
!! AAGTAAATTCAATGTATATT+AGG + chr7_1:54267343-54267362 None:intergenic 15.0%
!!! TTTTATTTATTGATTTCAAG+TGG - chr7_1:54267541-54267560 Msa1024660:intron 15.0%
!! TTATAAATCAAAGTAAAAGA+TGG + chr7_1:54268232-54268251 None:intergenic 15.0%
!! TAAAATATACAAGAAGAAAT+AGG + chr7_1:54268273-54268292 None:intergenic 15.0%
!!! TCTTCTAAATATTTTTCATA+GGG + chr7_1:54268756-54268775 None:intergenic 15.0%
!!! TTCTTCTAAATATTTTTCAT+AGG + chr7_1:54268757-54268776 None:intergenic 15.0%
!!! TTGTTTTTTCTTTTCTTTTG+AGG + chr7_1:54262664-54262683 None:intergenic 20.0%
!! AATAGAACAAGAATAATATG+AGG + chr7_1:54262888-54262907 None:intergenic 20.0%
!!! ATGTTGCGTTTTATTTTATT+TGG - chr7_1:54263013-54263032 Msa1024660:three_prime_UTR 20.0%
!!! TTTATTTTATTTGGTGTTTC+AGG - chr7_1:54263022-54263041 Msa1024660:three_prime_UTR 20.0%
!!! TTATTTTATTTGGTGTTTCA+GGG - chr7_1:54263023-54263042 Msa1024660:three_prime_UTR 20.0%
!! AATTGCTAAAAACTGAAATA+AGG + chr7_1:54263132-54263151 None:intergenic 20.0%
!!! TATATTTGAATTTTGTCTAG+AGG - chr7_1:54263225-54263244 Msa1024660:three_prime_UTR 20.0%
!! GAATTATATACAATGTTACT+TGG - chr7_1:54263295-54263314 Msa1024660:three_prime_UTR 20.0%
!!! TTTTATTTGTGCTTAATTTC+AGG - chr7_1:54263426-54263445 Msa1024660:intron 20.0%
!!! AATTTAAGTAGTTTTATCCA+AGG - chr7_1:54263656-54263675 Msa1024660:intron 20.0%
!!! TTTTTTTTATGACGAAAAAG+GGG + chr7_1:54264448-54264467 None:intergenic 20.0%
!!! TTTCATCACATTTTACATTA+TGG - chr7_1:54264606-54264625 Msa1024660:intron 20.0%
!!! AAAGGCATTTAATTTATTTC+AGG + chr7_1:54264739-54264758 None:intergenic 20.0%
!! GAAATAAATTAAATGCCTTT+CGG - chr7_1:54264739-54264758 Msa1024660:intron 20.0%
!!! ACATTTTTACATAATTCTGA+TGG - chr7_1:54265138-54265157 Msa1024660:intron 20.0%
!! AAAATTGAAGATACATGTTT+AGG + chr7_1:54265207-54265226 None:intergenic 20.0%
!! AGTGAATAAACACTAATATA+AGG - chr7_1:54265249-54265268 Msa1024660:intron 20.0%
!!! TTCTTTTTTGGATATTTGAA+AGG + chr7_1:54265362-54265381 None:intergenic 20.0%
!!! ATCTTGGCAAAATTTAATTT+TGG - chr7_1:54266365-54266384 Msa1024660:intron 20.0%
!! ATATAGTAAAAAAAAAGGAG+GGG + chr7_1:54266776-54266795 None:intergenic 20.0%
!! AAAAAACGTATTTCTTCATA+TGG + chr7_1:54266905-54266924 None:intergenic 20.0%
!! GACAAAAATAAAAAATCATG+TGG + chr7_1:54266964-54266983 None:intergenic 20.0%
!! CAATGTATATTAGGAAATAA+GGG + chr7_1:54267334-54267353 None:intergenic 20.0%
!! TCAATGTATATTAGGAAATA+AGG + chr7_1:54267335-54267354 None:intergenic 20.0%
!!! TGAAAAATCATGTCAATTTT+AGG + chr7_1:54268096-54268115 None:intergenic 20.0%
!!! TAAGATATGCATAAGTTTTA+GGG + chr7_1:54268136-54268155 None:intergenic 20.0%
!!! ATAAGATATGCATAAGTTTT+AGG + chr7_1:54268137-54268156 None:intergenic 20.0%
!! ATAGGATTAAGAATTACAAT+GGG + chr7_1:54268255-54268274 None:intergenic 20.0%
!! AATAGGATTAAGAATTACAA+TGG + chr7_1:54268256-54268275 None:intergenic 20.0%
!!! CTTCTAAATATTTTTCATAG+GGG + chr7_1:54268755-54268774 None:intergenic 20.0%
!!! ATACTACTTAATTTTAACTG+TGG - chr7_1:54268781-54268800 Msa1024660:intron 20.0%
!!! TACTACTTAATTTTAACTGT+GGG - chr7_1:54268782-54268801 Msa1024660:intron 20.0%
!!! ATTGGTTTATTTTCAGATCT+GGG - chr7_1:54262801-54262820 Msa1024660:three_prime_UTR 25.0%
! TATTGTGAAGAAAAAGTTGA+TGG - chr7_1:54262947-54262966 Msa1024660:three_prime_UTR 25.0%
!! ATTGTGAAGAAAAAGTTGAT+GGG - chr7_1:54262948-54262967 Msa1024660:three_prime_UTR 25.0%
! GGATAGAAGTAAATTAGTAT+TGG - chr7_1:54263270-54263289 Msa1024660:three_prime_UTR 25.0%
! GTGTTAAATACTTCTTTGAT+TGG + chr7_1:54263532-54263551 None:intergenic 25.0%
! TTCAATTTCACCCAATTTAA+AGG + chr7_1:54263938-54263957 None:intergenic 25.0%
! TATTATTGAATCAGACTCTA+AGG - chr7_1:54264143-54264162 Msa1024660:intron 25.0%
!! AAAACAGTTTTACAGAAATC+AGG + chr7_1:54264366-54264385 None:intergenic 25.0%
!!! TTGATTGGTTGTTTGTTTTT+TGG - chr7_1:54264416-54264435 Msa1024660:intron 25.0%
!!! TGATTGGTTGTTTGTTTTTT+GGG - chr7_1:54264417-54264436 Msa1024660:intron 25.0%
! AAGAAGCAGCATATATATAT+TGG - chr7_1:54264525-54264544 Msa1024660:intron 25.0%
! AAAGTCATACCAATTAATGA+AGG + chr7_1:54264589-54264608 None:intergenic 25.0%
! ACACAAATCTAAATTGATCT+AGG - chr7_1:54264681-54264700 Msa1024660:intron 25.0%
!! GCATTTAATTTATTTCAGGT+TGG + chr7_1:54264735-54264754 None:intergenic 25.0%
! TTAAGTGAAAGGAAAATATG+AGG + chr7_1:54264801-54264820 None:intergenic 25.0%
! GAAGTTTGATATTAAGTGAA+AGG + chr7_1:54264812-54264831 None:intergenic 25.0%
!! ATGGATTACTTAACTATGAA+CGG - chr7_1:54265026-54265045 Msa1024660:intron 25.0%
! AAGATATTAACATGCAAAGT+TGG + chr7_1:54265082-54265101 None:intergenic 25.0%
! AACTTTGCATGTTAATATCT+TGG - chr7_1:54265081-54265100 Msa1024660:intron 25.0%
! ACTTTGCATGTTAATATCTT+GGG - chr7_1:54265082-54265101 Msa1024660:intron 25.0%
! CATAATTCTGATGGAAATAA+TGG - chr7_1:54265147-54265166 Msa1024660:intron 25.0%
! AATATAAGGACTTCCATTAT+TGG - chr7_1:54265263-54265282 Msa1024660:intron 25.0%
!! TTTTAACGAATAGCCAATAA+TGG + chr7_1:54265279-54265298 None:intergenic 25.0%
! GGCTATTCGTTAAAAATATA+AGG - chr7_1:54265284-54265303 Msa1024660:intron 25.0%
! TATCCAAAAAAGAAGACAAA+CGG - chr7_1:54265368-54265387 Msa1024660:intron 25.0%
! AAGGGTAAGAATTTCTATAA+AGG - chr7_1:54265588-54265607 Msa1024660:intron 25.0%
! AGAATTTCTATAAAGGTGAT+TGG - chr7_1:54265595-54265614 Msa1024660:intron 25.0%
!! ATCTAAACTTGTTTGAGTAT+AGG - chr7_1:54265793-54265812 Msa1024660:intron 25.0%
!! TCTAAACTTGTTTGAGTATA+GGG - chr7_1:54265794-54265813 Msa1024660:intron 25.0%
!! CAGAGAAATTTGTTTGATAT+TGG + chr7_1:54265887-54265906 None:intergenic 25.0%
! TAACAGCTTTCTAAATGTAA+AGG + chr7_1:54265933-54265952 None:intergenic 25.0%
! AAATTGCTACTCCAATATAA+AGG - chr7_1:54266008-54266027 Msa1024660:intron 25.0%
! AATTGCTACTCCAATATAAA+GGG - chr7_1:54266009-54266028 Msa1024660:intron 25.0%
! TTGAACTAAAGTGGAAAATA+GGG + chr7_1:54266055-54266074 None:intergenic 25.0%
! TTTGAACTAAAGTGGAAAAT+AGG + chr7_1:54266056-54266075 None:intergenic 25.0%
! AAATAATATCGCTTTCTCAA+TGG + chr7_1:54266084-54266103 None:intergenic 25.0%
!! ATTTTTGTCTCTAATTCTGT+TGG - chr7_1:54266100-54266119 Msa1024660:intron 25.0%
!! TTTTTGTCTCTAATTCTGTT+GGG - chr7_1:54266101-54266120 Msa1024660:intron 25.0%
! AATAGTCTATGAGTATGATT+GGG + chr7_1:54266277-54266296 None:intergenic 25.0%
! AAATAGTCTATGAGTATGAT+TGG + chr7_1:54266278-54266297 None:intergenic 25.0%
!! AATTAAATTTTGCCAAGATC+TGG + chr7_1:54266364-54266383 None:intergenic 25.0%
! CATTTAATTATACATGAAGC+TGG + chr7_1:54266579-54266598 None:intergenic 25.0%
! TATAGTAAAAAAAAAGGAGG+GGG + chr7_1:54266775-54266794 None:intergenic 25.0%
!!! GAAAATGTTTGTTGTTTTCA+AGG + chr7_1:54267195-54267214 None:intergenic 25.0%
!! TATTAACACAGTTCATTTTC+AGG + chr7_1:54267236-54267255 None:intergenic 25.0%
! TGAAAATGAACTGTGTTAAT+AGG - chr7_1:54267235-54267254 Msa1024660:intron 25.0%
! GAACACAAAGTAATTGATAT+TGG - chr7_1:54267581-54267600 Msa1024660:intron 25.0%
!!! ATCATCAACTTGTTAAAACT+TGG - chr7_1:54267662-54267681 Msa1024660:intron 25.0%
! ATACCATGTTGAAAAGATAT+GGG + chr7_1:54267735-54267754 None:intergenic 25.0%
! TATACCATGTTGAAAAGATA+TGG + chr7_1:54267736-54267755 None:intergenic 25.0%
! ACCTGTTCAATAATGTTAAA+TGG + chr7_1:54267761-54267780 None:intergenic 25.0%
! CAAATTAAGCAAGATAAAGA+TGG + chr7_1:54267811-54267830 None:intergenic 25.0%
!! TCCTTTTCAATTTCATCTAA+AGG + chr7_1:54267874-54267893 None:intergenic 25.0%
! TTAGATGAAATTGAAAAGGA+AGG - chr7_1:54267874-54267893 Msa1024660:intron 25.0%
!! TGTATATTTTACTTCCCTAA+CGG - chr7_1:54268282-54268301 Msa1024660:intron 25.0%
! AATACTTCAAAGAGTTCTTT+GGG + chr7_1:54268422-54268441 None:intergenic 25.0%
! TTCAATTAGCATAAGAAACA+AGG + chr7_1:54268463-54268482 None:intergenic 25.0%
! AAATTCATCATCAAAACCAT+TGG - chr7_1:54268517-54268536 Msa1024660:intron 25.0%
! TTGACTTTAAATACTACTTG+AGG - chr7_1:54268620-54268639 Msa1024660:intron 25.0%
! TGACTTTAAATACTACTTGA+GGG - chr7_1:54268621-54268640 Msa1024660:intron 25.0%
! AAATGACAAAATAGTTGTCA+CGG - chr7_1:54268860-54268879 Msa1024660:intron 25.0%
TGAAGAATGAAATAACACGA+CGG + chr7_1:54262737-54262756 None:intergenic 30.0%
AAATAAACCAATCAATCCCA+CGG + chr7_1:54262793-54262812 None:intergenic 30.0%
!!! GATTGGTTTATTTTCAGATC+TGG - chr7_1:54262800-54262819 Msa1024660:three_prime_UTR 30.0%
GAATCATATTGTAGATCACT+CGG - chr7_1:54263165-54263184 Msa1024660:three_prime_UTR 30.0%
ACAGAAAAGATAAGGAATAG+AGG - chr7_1:54263249-54263268 Msa1024660:three_prime_UTR 30.0%
! TACAATGTTACTTGGTTAAG+TGG - chr7_1:54263303-54263322 Msa1024660:three_prime_UTR 30.0%
!!! ACAGTACTTTTGGTTTCTTT+GGG - chr7_1:54263329-54263348 Msa1024660:three_prime_UTR 30.0%
! GCTTTTATACTCAAATGCAT+AGG + chr7_1:54263463-54263482 None:intergenic 30.0%
!! GCCATTTTGATATGAAACTT+TGG - chr7_1:54263612-54263631 Msa1024660:intron 30.0%
GCCAAAGTTTCATATCAAAA+TGG + chr7_1:54263616-54263635 None:intergenic 30.0%
! TTTTGATATGAAACTTTGGC+AGG - chr7_1:54263616-54263635 Msa1024660:intron 30.0%
AATTAGTGAGTTAGTGAATC+AGG - chr7_1:54263808-54263827 Msa1024660:intron 30.0%
ATTTCACCCAATTTAAAGGT+GGG + chr7_1:54263934-54263953 None:intergenic 30.0%
AATTTCACCCAATTTAAAGG+TGG + chr7_1:54263935-54263954 None:intergenic 30.0%
AGTGTTATCCGAAATTCTAT+CGG - chr7_1:54264006-54264025 Msa1024660:intron 30.0%
TAAACTCTCCGATAGAATTT+CGG + chr7_1:54264017-54264036 None:intergenic 30.0%
! AGAGTTTATCTCAGCATTTT+CGG - chr7_1:54264029-54264048 Msa1024660:intron 30.0%
!!! GAACTTCTTGCTATTTTTCA+AGG - chr7_1:54264084-54264103 Msa1024660:intron 30.0%
!! ATTAAATTGGCTCTAGACAA+TGG - chr7_1:54264108-54264127 Msa1024660:intron 30.0%
!! TTAAATTGGCTCTAGACAAT+GGG - chr7_1:54264109-54264128 Msa1024660:intron 30.0%
! TTTTAGATTGATGTCAGTCA+TGG - chr7_1:54264233-54264252 Msa1024660:intron 30.0%
ACAACATCAAAATAGTGAGT+CGG + chr7_1:54264342-54264361 None:intergenic 30.0%
!!! GATTGGTTGTTTGTTTTTTG+GGG - chr7_1:54264418-54264437 Msa1024660:intron 30.0%
!!! ATTGGTTGTTTGTTTTTTGG+GGG - chr7_1:54264419-54264438 Msa1024660:intron 30.0%
ATTCAAATTCCTGAACTGTA+TGG - chr7_1:54264633-54264652 Msa1024660:intron 30.0%
!! TTGTTCCACTCACTATTTTT+AGG - chr7_1:54264903-54264922 Msa1024660:intron 30.0%
!! CTATTTCTGACTGATTTGAA+TGG - chr7_1:54264982-54265001 Msa1024660:intron 30.0%
TGGATTACTTAACTATGAAC+GGG - chr7_1:54265027-54265046 Msa1024660:intron 30.0%
! GTATGATGATGCTCTAATTT+GGG - chr7_1:54265169-54265188 Msa1024660:intron 30.0%
CTCTAATTTGGGTCTAAAAA+AGG - chr7_1:54265180-54265199 Msa1024660:intron 30.0%
TGCCTTCAATAAACATTCAA+CGG - chr7_1:54265309-54265328 Msa1024660:intron 30.0%
TACCGTTGAATGTTTATTGA+AGG + chr7_1:54265314-54265333 None:intergenic 30.0%
!!! TAACCGTTTGTCTTCTTTTT+TGG + chr7_1:54265374-54265393 None:intergenic 30.0%
GTTAACAAAGAGTAATCCAA+CGG - chr7_1:54265390-54265409 Msa1024660:intron 30.0%
!! TGTGCATTTTGAAGAAACAA+TGG - chr7_1:54265418-54265437 Msa1024660:intron 30.0%
!! CATTTTGAAGAAACAATGGA+AGG - chr7_1:54265422-54265441 Msa1024660:intron 30.0%
!! TTGTTCTTCTAAAGTTACCA+AGG - chr7_1:54265508-54265527 Msa1024660:intron 30.0%
! TCTAAAGTTACCAAGGTTTA+TGG - chr7_1:54265515-54265534 Msa1024660:intron 30.0%
ATTGCTACTCCAATATAAAG+GGG - chr7_1:54266010-54266029 Msa1024660:intron 30.0%
TGTTAAGTACCCCTTTATAT+TGG + chr7_1:54266022-54266041 None:intergenic 30.0%
! TGGTGAATTTTGAACTAAAG+TGG + chr7_1:54266064-54266083 None:intergenic 30.0%
! TTCAGAGCTTTAGTATGATT+GGG + chr7_1:54266174-54266193 None:intergenic 30.0%
! TTTCAGAGCTTTAGTATGAT+TGG + chr7_1:54266175-54266194 None:intergenic 30.0%
GTTATATTATATTGCAGTGC+TGG - chr7_1:54266247-54266266 Msa1024660:intron 30.0%
! CGTATATTCGACAACATTTT+AGG - chr7_1:54266335-54266354 Msa1024660:intron 30.0%
GGGAAAATTAAAGAATGAAG+AGG - chr7_1:54266649-54266668 Msa1024660:intron 30.0%
ACAAATGTGAAGGAATAAGA+GGG + chr7_1:54266705-54266724 None:intergenic 30.0%
AACAAATGTGAAGGAATAAG+AGG + chr7_1:54266706-54266725 None:intergenic 30.0%
! TTAGTATCCCTCTATACTTT+TGG - chr7_1:54267113-54267132 Msa1024660:intron 30.0%
!! ACTTTTGGTTGTGCAATTTT+TGG - chr7_1:54267128-54267147 Msa1024660:intron 30.0%
TCATACGTAATCTACAAAAC+TGG + chr7_1:54267396-54267415 None:intergenic 30.0%
!!! TGGAAGGTTTTAACTTTGAA+TGG + chr7_1:54267474-54267493 None:intergenic 30.0%
!! TTATTGATTTCAAGTGGTTG+AGG - chr7_1:54267547-54267566 Msa1024660:intron 30.0%
!! TATTGATTTCAAGTGGTTGA+GGG - chr7_1:54267548-54267567 Msa1024660:intron 30.0%
! ACTTGTTAAAACTTGGATGA+AGG - chr7_1:54267669-54267688 Msa1024660:intron 30.0%
CTTGTTAAAACTTGGATGAA+GGG - chr7_1:54267670-54267689 Msa1024660:intron 30.0%
TTGTTAAAACTTGGATGAAG+GGG - chr7_1:54267671-54267690 Msa1024660:intron 30.0%
GCCATTTAACATTATTGAAC+AGG - chr7_1:54267757-54267776 Msa1024660:intron 30.0%
GCCTTTAGATGAAATTGAAA+AGG - chr7_1:54267870-54267889 Msa1024660:intron 30.0%
GTTGTCAAATGTATAGAACA+CGG + chr7_1:54267931-54267950 None:intergenic 30.0%
!!! ATATGCATAAGTTTTAGGGT+AGG + chr7_1:54268132-54268151 None:intergenic 30.0%
! GTATATTTTACTTCCCTAAC+GGG - chr7_1:54268283-54268302 Msa1024660:intron 30.0%
!! AACTCTTTCAAGTATTGATC+TGG - chr7_1:54268384-54268403 Msa1024660:intron 30.0%
CAATACTTCAAAGAGTTCTT+TGG + chr7_1:54268423-54268442 None:intergenic 30.0%
TGCAGATCAATAATTTCAAG+AGG + chr7_1:54268488-54268507 None:intergenic 30.0%
! ATATTTGCTGCAAAATGTGA+TGG - chr7_1:54268584-54268603 Msa1024660:intron 30.0%
!!! TACTTAATTTTAACTGTGGG+AGG - chr7_1:54268785-54268804 Msa1024660:intron 30.0%
!!! ACTTAATTTTAACTGTGGGA+GGG - chr7_1:54268786-54268805 Msa1024660:intron 30.0%
CATTCACATCAACATCAAAA+GGG + chr7_1:54269073-54269092 None:intergenic 30.0%
ATGAAATAACACGACGGTAT+CGG + chr7_1:54262731-54262750 None:intergenic 35.0%
GTCATGAAAATTCATACCCA+CGG + chr7_1:54262862-54262881 None:intergenic 35.0%
TTGTAGATCACTCGGTAAAT+TGG - chr7_1:54263173-54263192 Msa1024660:three_prime_UTR 35.0%
CTAGAGGAACAGAAAAGATA+AGG - chr7_1:54263241-54263260 Msa1024660:three_prime_UTR 35.0%
! TAAGTGGAAGACAGTACTTT+TGG - chr7_1:54263319-54263338 Msa1024660:three_prime_UTR 35.0%
!!! GACAGTACTTTTGGTTTCTT+TGG - chr7_1:54263328-54263347 Msa1024660:three_prime_UTR 35.0%
! TTTGGTTTCTTTGGGAATGT+CGG - chr7_1:54263337-54263356 Msa1024660:three_prime_UTR 35.0%
! TCCAAAAGTACAATCTCAAC+TGG - chr7_1:54263484-54263503 Msa1024660:intron 35.0%
! ACCAGTTGAGATTGTACTTT+TGG + chr7_1:54263488-54263507 None:intergenic 35.0%
TGCTTGATAAATCTTGTGAG+TGG - chr7_1:54263708-54263727 Msa1024660:intron 35.0%
TGGTGACATTAGATTGTGTT+TGG - chr7_1:54263744-54263763 Msa1024660:intron 35.0%
TAGATTGTGTTTGGAAAGCT+AGG - chr7_1:54263753-54263772 Msa1024660:intron 35.0%
TGGGTGAAATTGAATTGTGA+TGG - chr7_1:54263944-54263963 Msa1024660:intron 35.0%
TAGAATTTCGGATAACACTC+CGG + chr7_1:54264005-54264024 None:intergenic 35.0%
AAGAAGTTCAGCTGTGATAA+TGG + chr7_1:54264073-54264092 None:intergenic 35.0%
CTACAGAGAAGCAAATAAAG+TGG - chr7_1:54264278-54264297 Msa1024660:intron 35.0%
TGGCATGTTATCTCTTTGAT+TGG - chr7_1:54264401-54264420 Msa1024660:intron 35.0%
! ATGGATTTTGCAAGAGAAGA+CGG - chr7_1:54264469-54264488 Msa1024660:intron 35.0%
AGAGTTCAGATGATAAGTGT+TGG + chr7_1:54264498-54264517 None:intergenic 35.0%
TTGGCATATAATGCACATCA+AGG - chr7_1:54264544-54264563 Msa1024660:intron 35.0%
TGGCATATAATGCACATCAA+GGG - chr7_1:54264545-54264564 Msa1024660:intron 35.0%
GAAAATATGAGAAGTCCGAA+AGG + chr7_1:54264757-54264776 None:intergenic 35.0%
GAGGACAAAAGGTAAATGAA+AGG + chr7_1:54264779-54264798 None:intergenic 35.0%
GAAAATATGAGGAGGACAAA+AGG + chr7_1:54264790-54264809 None:intergenic 35.0%
AGTGAAAGGAAAATATGAGG+AGG + chr7_1:54264798-54264817 None:intergenic 35.0%
TGTGACCTAAAAATAGTGAG+TGG + chr7_1:54264911-54264930 None:intergenic 35.0%
! GGTATGATGATGCTCTAATT+TGG - chr7_1:54265168-54265187 Msa1024660:intron 35.0%
TTCAACAGTTTCACCAACAA+TGG - chr7_1:54265464-54265483 Msa1024660:intron 35.0%
AGAAACAGATACACCATTGT+TGG + chr7_1:54265480-54265499 None:intergenic 35.0%
! ACAATGGTGTATCTGTTTCT+TGG - chr7_1:54265480-54265499 Msa1024660:intron 35.0%
AAGTTACCAAGGTTTATGGT+TGG - chr7_1:54265519-54265538 Msa1024660:intron 35.0%
TTTGTACACTCTCTTCAGAT+TGG - chr7_1:54265770-54265789 Msa1024660:intron 35.0%
AACTAAAGTGGAAAATAGGG+AGG + chr7_1:54266052-54266071 None:intergenic 35.0%
TTAGTATGATTGGGTCATGT+AGG + chr7_1:54266165-54266184 None:intergenic 35.0%
ATACGCTAATTACTCCAAAC+TGG + chr7_1:54266320-54266339 None:intergenic 35.0%
! TAGTACTGAAGTTCAAACTC+AGG + chr7_1:54266526-54266545 None:intergenic 35.0%
TGAAGAGACAACAAATGTGA+AGG + chr7_1:54266715-54266734 None:intergenic 35.0%
CAATAGTCAACACATTCCTT+TGG + chr7_1:54266838-54266857 None:intergenic 35.0%
! TGCACAACCAAAAGTATAGA+GGG + chr7_1:54267123-54267142 None:intergenic 35.0%
! TTGCACAACCAAAAGTATAG+AGG + chr7_1:54267124-54267143 None:intergenic 35.0%
!! AAGAAGCAAGTATTGATGAC+AGG + chr7_1:54267500-54267519 None:intergenic 35.0%
AAGTAATTGATATTGGCGAC+TGG - chr7_1:54267588-54267607 Msa1024660:intron 35.0%
ATTCCTTCACTAAGGATGAA+GGG - chr7_1:54267612-54267631 Msa1024660:intron 35.0%
GAAAAGATATGGGAACATTC+TGG + chr7_1:54267725-54267744 None:intergenic 35.0%
! GTTCCCATATCTTTTCAACA+TGG - chr7_1:54267729-54267748 Msa1024660:intron 35.0%
AAGGAAGGAAAATACTGATG+TGG - chr7_1:54267889-54267908 Msa1024660:intron 35.0%
AGGAAGGAAAATACTGATGT+GGG - chr7_1:54267890-54267909 Msa1024660:intron 35.0%
ACTTACATTTGAGCATCCAT+AGG - chr7_1:54268053-54268072 Msa1024660:intron 35.0%
CAAATGCATTCTTACTCTGT+TGG - chr7_1:54268312-54268331 Msa1024660:intron 35.0%
!! TCTTTCAAGTATTGATCTGG+AGG - chr7_1:54268387-54268406 Msa1024660:intron 35.0%
!! AAAGAGTTCTTTGGGATTAC+AGG + chr7_1:54268414-54268433 None:intergenic 35.0%
!! TCTTTGAAGTATTGATCTGC+AGG - chr7_1:54268429-54268448 Msa1024660:intron 35.0%
TTCATCATCAAAACCATTGG+TGG - chr7_1:54268520-54268539 Msa1024660:intron 35.0%
TCATCATCAAAACCATTGGT+GGG - chr7_1:54268521-54268540 Msa1024660:intron 35.0%
CATAGTCTCATAGGTAATGT+AGG - chr7_1:54268709-54268728 Msa1024660:intron 35.0%
! GGTAATGTAGGTTTTTGTTC+TGG - chr7_1:54268721-54268740 Msa1024660:intron 35.0%
! AATGTAGGTTTTTGTTCTGG+TGG - chr7_1:54268724-54268743 Msa1024660:intron 35.0%
! ATGTAGGTTTTTGTTCTGGT+GGG - chr7_1:54268725-54268744 Msa1024660:intron 35.0%
CCATTCACATCAACATCAAA+AGG + chr7_1:54269074-54269093 None:intergenic 35.0%
! CCTTTTGATGTTGATGTGAA+TGG - chr7_1:54269071-54269090 Msa1024660:five_prime_UTR 35.0%
!! TTTTTAGTGATGAGGATCGG+AGG + chr7_1:54262770-54262789 None:intergenic 40.0%
!!! CGGTTTTTAGTGATGAGGAT+CGG + chr7_1:54262773-54262792 None:intergenic 40.0%
ATCCTCATCACTAAAAACCG+TGG - chr7_1:54262773-54262792 Msa1024660:three_prime_UTR 40.0%
TCCTCATCACTAAAAACCGT+GGG - chr7_1:54262774-54262793 Msa1024660:three_prime_UTR 40.0%
CTAAAAACCGTGGGATTGAT+TGG - chr7_1:54262783-54262802 Msa1024660:three_prime_UTR 40.0%
TGCTTAATTTCAGGCAGCAA+AGG - chr7_1:54263435-54263454 Msa1024660:intron 40.0%
GACACGAAAAATGTGCAAAG+AGG + chr7_1:54263591-54263610 None:intergenic 40.0%
TCCAAGGTAACATTGTTGAG+TGG - chr7_1:54263672-54263691 Msa1024660:intron 40.0%
TCCACTCAACAATGTTACCT+TGG + chr7_1:54263676-54263695 None:intergenic 40.0%
TGAGTGGAGACTCAAATTTG+TGG - chr7_1:54263724-54263743 Msa1024660:intron 40.0%
ATGTCGCAGAACTCATGAAT+TGG - chr7_1:54263832-54263851 Msa1024660:intron 40.0%
TCATTCTCCTCCAAATACTG+AGG - chr7_1:54263880-54263899 Msa1024660:intron 40.0%
GATTCCATGACCTCAGTATT+TGG + chr7_1:54263893-54263912 None:intergenic 40.0%
TCATGGAATCCGAGATTTCT+TGG - chr7_1:54263903-54263922 Msa1024660:intron 40.0%
CATGGAATCCGAGATTTCTT+GGG - chr7_1:54263904-54263923 Msa1024660:intron 40.0%
! TTATCTCAGCATTTTCGGTG+AGG - chr7_1:54264034-54264053 Msa1024660:intron 40.0%
AGGAAGCAGTTGATTATCTC+AGG - chr7_1:54264163-54264182 Msa1024660:intron 40.0%
TGGCAGATGCTTTAGCTAAA+TGG - chr7_1:54264298-54264317 Msa1024660:intron 40.0%
GGCAGATGCTTTAGCTAAAT+GGG - chr7_1:54264299-54264318 Msa1024660:intron 40.0%
GCAGATGCTTTAGCTAAATG+GGG - chr7_1:54264300-54264319 Msa1024660:intron 40.0%
CAGATGCTTTAGCTAAATGG+GGG - chr7_1:54264301-54264320 Msa1024660:intron 40.0%
TGCTCACTGCCTTCATTAAT+TGG - chr7_1:54264577-54264596 Msa1024660:intron 40.0%
CCTGAATATCCATACAGTTC+AGG + chr7_1:54264645-54264664 None:intergenic 40.0%
CCTGAACTGTATGGATATTC+AGG - chr7_1:54264642-54264661 Msa1024660:intron 40.0%
CAAAATGCACAATTCACCGT+TGG + chr7_1:54265409-54265428 None:intergenic 40.0%
TTACCAAGGTTTATGGTTGG+TGG - chr7_1:54265522-54265541 Msa1024660:intron 40.0%
AACTACACTACCTGAGCTAA+GGG - chr7_1:54265570-54265589 Msa1024660:intron 40.0%
GAAATTCTTACCCTTAGCTC+AGG + chr7_1:54265583-54265602 None:intergenic 40.0%
AACTCTGTGTGTGTTTGTGT+GGG + chr7_1:54265747-54265766 None:intergenic 40.0%
AAACTCTGTGTGTGTTTGTG+TGG + chr7_1:54265748-54265767 None:intergenic 40.0%
GTCTATGAGTATGATTGGGT+TGG + chr7_1:54266273-54266292 None:intergenic 40.0%
!! CATTTTAGGAAGCCAGATCT+TGG - chr7_1:54266349-54266368 Msa1024660:intron 40.0%
! GCGAAATTTTCATGCAAAGC+TGG + chr7_1:54266450-54266469 None:intergenic 40.0%
GAAGAGGTTAAGTAGTGTGA+TGG - chr7_1:54266665-54266684 Msa1024660:intron 40.0%
ACTATATTATGCAGGGAGAG+AGG - chr7_1:54266789-54266808 Msa1024660:intron 40.0%
AAAACACCTGAGAACTCCAA+AGG - chr7_1:54266819-54266838 Msa1024660:intron 40.0%
CTCTCATAATCTCAACGTGT+TGG + chr7_1:54266863-54266882 None:intergenic 40.0%
CAACACGTTGAGATTATGAG+AGG - chr7_1:54266861-54266880 Msa1024660:intron 40.0%
!! TATTGATGACAGGCTTTGGA+AGG + chr7_1:54267490-54267509 None:intergenic 40.0%
!! CAAGTATTGATGACAGGCTT+TGG + chr7_1:54267494-54267513 None:intergenic 40.0%
CATTCCTTCACTAAGGATGA+AGG - chr7_1:54267611-54267630 Msa1024660:intron 40.0%
TTCCTTCACTAAGGATGAAG+GGG - chr7_1:54267613-54267632 Msa1024660:intron 40.0%
GGAAGGAAAATACTGATGTG+GGG - chr7_1:54267891-54267910 Msa1024660:intron 40.0%
! AATCGCATAGGCAGCTTTTA+AGG + chr7_1:54267953-54267972 None:intergenic 40.0%
TGCCTATGCGATTATTCTTG+TGG - chr7_1:54267960-54267979 Msa1024660:intron 40.0%
GCCTATGCGATTATTCTTGT+GGG - chr7_1:54267961-54267980 Msa1024660:intron 40.0%
TGGATTTGAATGTGTCTCAG+AGG - chr7_1:54267985-54268004 Msa1024660:intron 40.0%
GCATTTGTAATTGCCCGTTA+GGG + chr7_1:54268299-54268318 None:intergenic 40.0%
TGCATTTGTAATTGCCCGTT+AGG + chr7_1:54268300-54268319 None:intergenic 40.0%
TGCATTCTTACTCTGTTGGT+TGG - chr7_1:54268316-54268335 Msa1024660:intron 40.0%
TTATGATGCAGAGATGTCAG+TGG - chr7_1:54268340-54268359 Msa1024660:intron 40.0%
!! ATCAAAACCATTGGTGGGTT+TGG - chr7_1:54268526-54268545 Msa1024660:intron 40.0%
TACTACTTGAGGGAAGAGAA+AGG - chr7_1:54268631-54268650 Msa1024660:intron 40.0%
ACTACTTGAGGGAAGAGAAA+GGG - chr7_1:54268632-54268651 Msa1024660:intron 40.0%
ATGAGACTATGCACACTTCA+AGG + chr7_1:54268700-54268719 None:intergenic 40.0%
TGAAGTGTGCATAGTCTCAT+AGG - chr7_1:54268700-54268719 Msa1024660:intron 40.0%
TGTCACGGAAATGACATGAA+TGG - chr7_1:54268875-54268894 Msa1024660:intron 40.0%
ATGTCTGTAGCTACTGTTCA+TGG + chr7_1:54268952-54268971 None:intergenic 40.0%
!! AATAACACGACGGTATCGGT+CGG + chr7_1:54262727-54262746 None:intergenic 45.0%
!!! TCCCACGGTTTTTAGTGATG+AGG + chr7_1:54262778-54262797 None:intergenic 45.0%
ATACCCACGGAGAAGAATTC+CGG + chr7_1:54262849-54262868 None:intergenic 45.0%
ACTTCTTTGATTGGCACTCG+AGG + chr7_1:54263523-54263542 None:intergenic 45.0%
AAACTTTGGCAGGAGCTGTT+GGG - chr7_1:54263626-54263645 Msa1024660:intron 45.0%
TCGCAGAACTCATGAATTGG+TGG - chr7_1:54263835-54263854 Msa1024660:intron 45.0%
TCCTCCAAATACTGAGGTCA+TGG - chr7_1:54263886-54263905 Msa1024660:intron 45.0%
TCCATGACCTCAGTATTTGG+AGG + chr7_1:54263890-54263909 None:intergenic 45.0%
GGTCTGCCCACCTTTAAATT+GGG - chr7_1:54263925-54263944 Msa1024660:intron 45.0%
!! TGTGATGGTGCTGTGAATCA+AGG - chr7_1:54263959-54263978 Msa1024660:intron 45.0%
!! ATGGTGCTGTGAATCAAGGT+GGG - chr7_1:54263963-54263982 Msa1024660:intron 45.0%
GGGTTAAGTGCAAGTTATGC+CGG - chr7_1:54263983-54264002 Msa1024660:intron 45.0%
! TCAGCATTTTCGGTGAGGTT+GGG - chr7_1:54264039-54264058 Msa1024660:intron 45.0%
GCAGTTGATTATCTCAGGCA+TGG - chr7_1:54264168-54264187 Msa1024660:intron 45.0%
! GTTTTGCTAGCTGATAGAGC+TGG - chr7_1:54264381-54264400 Msa1024660:intron 45.0%
CAACTACACTACCTGAGCTA+AGG - chr7_1:54265569-54265588 Msa1024660:intron 45.0%
!! CACATTCCTTTGGAGTTCTC+AGG + chr7_1:54266828-54266847 None:intergenic 45.0%
TGAGAGGAGTAAGATCTGAC+AGG - chr7_1:54266877-54266896 Msa1024660:intron 45.0%
ATCCCCTTCATCCTTAGTGA+AGG + chr7_1:54267618-54267637 None:intergenic 45.0%
ACTAAGGATGAAGGGGATGA+AGG - chr7_1:54267620-54267639 Msa1024660:intron 45.0%
CTAAGGATGAAGGGGATGAA+GGG - chr7_1:54267621-54267640 Msa1024660:intron 45.0%
TAAGGATGAAGGGGATGAAG+GGG - chr7_1:54267622-54267641 Msa1024660:intron 45.0%
GCCCACAAGAATAATCGCAT+AGG + chr7_1:54267965-54267984 None:intergenic 45.0%
ATGCGATTATTCTTGTGGGC+TGG - chr7_1:54267965-54267984 Msa1024660:intron 45.0%
ACAGCACAAGAACGAACCTA+TGG + chr7_1:54268072-54268091 None:intergenic 45.0%
! GTATTGATCTGCAGGACTTC+TGG - chr7_1:54268437-54268456 Msa1024660:intron 45.0%
! GTTTTCTCCAAACCCACCAA+TGG + chr7_1:54268536-54268555 None:intergenic 45.0%
TGCTGCAAAATGTGATGGCA+AGG - chr7_1:54268589-54268608 Msa1024660:intron 45.0%
CAAAATGTGATGGCAAGGCA+AGG - chr7_1:54268594-54268613 Msa1024660:intron 45.0%
TTCAAGGCTCTTTCTCTCCA+TGG + chr7_1:54268684-54268703 None:intergenic 45.0%
! AGTTTCTAGACCTGCAAGCA+TGG - chr7_1:54268836-54268855 Msa1024660:intron 45.0%
! GTTTCTAGACCTGCAAGCAT+GGG - chr7_1:54268837-54268856 Msa1024660:intron 45.0%
! TTGTCATTTCCCATGCTTGC+AGG + chr7_1:54268849-54268868 None:intergenic 45.0%
CACTGTTCACAGTTGCTAGA+AGG + chr7_1:54269014-54269033 None:intergenic 45.0%
ATGAAGGATCGGCTAGGGTT+TGG + chr7_1:54262699-54262718 None:intergenic 50.0%
AAACCCTAGCCGATCCTTCA+TGG - chr7_1:54262698-54262717 Msa1024660:three_prime_UTR 50.0%
CTTTGATTGGCACTCGAGGA+AGG + chr7_1:54263519-54263538 None:intergenic 50.0%
GAAACTTTGGCAGGAGCTGT+TGG - chr7_1:54263625-54263644 Msa1024660:intron 50.0%
TGGGCAGACCCAAGAAATCT+CGG + chr7_1:54263915-54263934 None:intergenic 50.0%
GGGTCTGCCCACCTTTAAAT+TGG - chr7_1:54263924-54263943 Msa1024660:intron 50.0%
!! GATGGTGCTGTGAATCAAGG+TGG - chr7_1:54263962-54263981 Msa1024660:intron 50.0%
! CTCAGCATTTTCGGTGAGGT+TGG - chr7_1:54264038-54264057 Msa1024660:intron 50.0%
CTGCCACCAACCATAAACCT+TGG + chr7_1:54265528-54265547 None:intergenic 50.0%
GTGTTCGTCGTGTTCCAGTT+TGG - chr7_1:54266303-54266322 Msa1024660:intron 50.0%
CGACTGGCATTCCTTCACTA+AGG - chr7_1:54267604-54267623 Msa1024660:intron 50.0%
! TGAGGGAAGAGAAAGGGCAT+TGG - chr7_1:54268638-54268657 Msa1024660:intron 50.0%
TTGGAGCGTGAGAGAGAGAA+AGG - chr7_1:54268657-54268676 Msa1024660:intron 50.0%
TGGAGCGTGAGAGAGAGAAA+GGG - chr7_1:54268658-54268677 Msa1024660:intron 50.0%
AAGGATCGGCTAGGGTTTGG+AGG + chr7_1:54262696-54262715 None:intergenic 55.0%
AGGCCATGAAGGATCGGCTA+GGG + chr7_1:54262704-54262723 None:intergenic 55.0%
CACGGAGAAGAATTCCGGTG+CGG + chr7_1:54262844-54262863 None:intergenic 55.0%
GCACCGGAATTCTTCTCCGT+GGG - chr7_1:54262843-54262862 Msa1024660:three_prime_UTR 55.0%
! GCATTTTCGGTGAGGTTGGG+AGG - chr7_1:54264042-54264061 Msa1024660:intron 55.0%
GTGAGAGAGAGAAAGGGCCA+TGG - chr7_1:54268664-54268683 Msa1024660:intron 55.0%
GAGGCCATGAAGGATCGGCT+AGG + chr7_1:54262705-54262724 None:intergenic 60.0%
GGTCGGAGGCCATGAAGGAT+CGG + chr7_1:54262710-54262729 None:intergenic 60.0%
! GTATCGGTCGGAGGCCATGA+AGG + chr7_1:54262715-54262734 None:intergenic 60.0%
!! AACACGACGGTATCGGTCGG+AGG + chr7_1:54262724-54262743 None:intergenic 60.0%
AATTCCGGTGCGGTGGTCGA+TGG + chr7_1:54262834-54262853 None:intergenic 60.0%
GGAGAAGAATTCCGGTGCGG+TGG + chr7_1:54262841-54262860 None:intergenic 60.0%
CGCACCGGAATTCTTCTCCG+TGG - chr7_1:54262842-54262861 Msa1024660:three_prime_UTR 60.0%
GTCACCATCGACCACCGCAC+CGG - chr7_1:54262827-54262846 Msa1024660:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 54262643 54269131 54262643 ID=Msa1024660;Name=Msa1024660
chr7_1 mRNA 54262643 54269131 54262643 ID=Msa1024660-mRNA-1;Parent=Msa1024660;Name=Msa1024660-mRNA-1;_AED=0.35;_eAED=0.35;_QI=74|0.5|0.66|1|0|0.33|3|714|85
chr7_1 exon 54262643 54263423 54262643 ID=Msa1024660-mRNA-1:exon:10782;Parent=Msa1024660-mRNA-1
chr7_1 exon 54268284 54268326 54268284 ID=Msa1024660-mRNA-1:exon:10781;Parent=Msa1024660-mRNA-1
chr7_1 exon 54268910 54269131 54268910 ID=Msa1024660-mRNA-1:exon:10780;Parent=Msa1024660-mRNA-1
chr7_1 five_prime_UTR 54269058 54269131 54269058 ID=Msa1024660-mRNA-1:five_prime_utr;Parent=Msa1024660-mRNA-1
chr7_1 CDS 54268910 54269057 54268910 ID=Msa1024660-mRNA-1:cds;Parent=Msa1024660-mRNA-1
chr7_1 CDS 54268284 54268326 54268284 ID=Msa1024660-mRNA-1:cds;Parent=Msa1024660-mRNA-1
chr7_1 CDS 54263357 54263423 54263357 ID=Msa1024660-mRNA-1:cds;Parent=Msa1024660-mRNA-1
chr7_1 three_prime_UTR 54262643 54263356 54262643 ID=Msa1024660-mRNA-1:three_prime_utr;Parent=Msa1024660-mRNA-1
Gene Sequence

>Msa1024660

ATGGCCTCCGACCGATACCGTCGTGTTATTTCATTCTTCAGTTCTGACAACCTCCGATCCTCATCACTAAAAACCGTGGGATTGATTGGTTTATTTTCAGATCTGGGCACGTCACCATCGACCACCGCACCGGAATTCTTCTCCGTGGGCAGCAAAGGTTCCTATGCATTTGAGTATAAAAGCTTCCAAAAAGATGTCAGTGGCTTACTTGAGAATTCACAAAGAACTCTTTCAAGTATTGATCTGGAGGACCTGTAA
Protein sequence

>Msa1024660

MASDRYRRVISFFSSDNLRSSSLKTVGLIGLFSDLGTSPSTTAPEFFSVGSKGSYAFEYKSFQKDVSGLLENSQRTLSSIDLEDL*