AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0166380

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0166380 MtrunA17_Chr1g0179841 96.759 216 4 1 55 267 597 812 3.23e-145 427
Msa0166380 MtrunA17_Chr7g0265211 70.048 207 62 0 60 266 750 956 2.49e-101 317
Msa0166380 MtrunA17_Chr1g0182481 55.721 201 82 5 60 257 697 893 4.79e-61 207
Msa0166380 MtrunA17_Chr2g0320451 50.521 192 83 3 87 270 846 1033 4.29e-58 200
Msa0166380 MtrunA17_Chr4g0025251 46.970 198 102 2 63 257 504 701 3.09e-51 178
Msa0166380 MtrunA17_Chr4g0028111 48.795 166 80 3 71 233 400 563 1.87e-40 148
Msa0166380 MtrunA17_Chr4g0027811 34.091 176 79 3 86 258 440 581 1.13e-25 106
Msa0166380 MtrunA17_Chr5g0430361 35.256 156 91 3 109 259 909 1059 2.44e-22 96.7
Msa0166380 MtrunA17_Chr1g0205451 35.526 152 94 2 106 255 861 1010 4.91e-21 93.2
Msa0166380 MtrunA17_Chr3g0105291 32.886 149 96 2 109 255 860 1006 1.24e-20 91.7
Msa0166380 MtrunA17_Chr3g0134811 32.680 153 99 2 109 259 643 793 9.77e-20 89.0
Msa0166380 MtrunA17_Chr7g0270101 32.237 152 99 2 106 255 636 785 4.22e-19 87.0
Msa0166380 MtrunA17_Chr1g0185491 31.395 172 107 3 102 264 1058 1227 1.78e-18 85.5
Msa0166380 MtrunA17_Chr2g0316251 33.766 154 98 2 106 257 1015 1166 2.05e-18 85.1
Msa0166380 MtrunA17_Chr7g0259981 30.323 155 102 4 109 259 142 294 4.91e-17 79.7
Msa0166380 MtrunA17_Chr5g0407251 30.464 151 101 2 109 257 271 419 6.56e-17 80.1
Msa0166380 MtrunA17_Chr3g0134821 30.719 153 102 2 109 259 684 834 1.64e-16 79.3
Msa0166380 MtrunA17_Chr5g0407211 29.801 151 102 2 109 257 271 419 2.54e-16 78.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0166380 AT2G36720.1 55.882 204 90 0 60 263 776 979 7.30e-74 244
Msa0166380 AT2G36720.2 55.882 204 90 0 60 263 776 979 7.30e-74 244
Msa0166380 AT2G37520.1 53.110 209 92 4 61 267 621 825 2.33e-64 216
Msa0166380 AT3G53680.2 54.000 200 86 4 61 258 639 834 2.01e-63 213
Msa0166380 AT3G53680.1 54.000 200 86 4 61 258 637 832 2.14e-63 213
Msa0166380 AT2G27980.1 50.990 202 94 3 61 258 858 1058 6.19e-62 211
Msa0166380 AT4G14920.2 33.742 163 102 3 101 259 827 987 2.13e-22 97.4
Msa0166380 AT4G14920.1 33.742 163 102 3 101 259 827 987 2.13e-22 97.4
Msa0166380 AT4G14920.3 33.742 163 102 3 101 259 827 987 2.15e-22 97.4
Msa0166380 AT1G05380.3 35.849 159 94 3 101 255 769 923 9.35e-20 89.7
Msa0166380 AT1G05380.1 35.849 159 94 3 101 255 769 923 9.35e-20 89.7
Msa0166380 AT1G05380.2 35.849 159 94 3 101 255 769 923 9.35e-20 89.7
Msa0166380 AT5G36740.5 32.075 159 104 2 109 265 801 957 1.21e-19 89.4
Msa0166380 AT5G36740.1 32.075 159 104 2 109 265 801 957 1.21e-19 89.4
Msa0166380 AT5G36740.4 32.075 159 104 2 109 265 658 814 1.31e-19 89.4
Msa0166380 AT5G58610.5 31.875 160 105 2 98 255 840 997 7.10e-19 87.0
Msa0166380 AT5G58610.6 31.875 160 105 2 98 255 814 971 7.33e-19 87.0
Msa0166380 AT5G58610.3 31.875 160 105 2 98 255 849 1006 7.46e-19 87.0
Msa0166380 AT5G58610.4 31.875 160 105 2 98 255 618 775 8.23e-19 86.7
Msa0166380 AT5G58610.8 31.875 160 105 2 98 255 849 1006 8.94e-19 86.7
Msa0166380 AT5G58610.2 31.875 160 105 2 98 255 849 1006 8.94e-19 86.7
Msa0166380 AT5G58610.1 31.875 160 105 2 98 255 814 971 9.91e-19 86.7
Msa0166380 AT5G58610.7 31.875 160 105 2 98 255 840 997 1.01e-18 86.7
Msa0166380 AT3G14980.3 33.333 159 102 2 101 257 867 1023 6.20e-18 84.3
Msa0166380 AT3G14980.5 33.333 159 102 2 101 257 822 978 6.44e-18 84.3
Msa0166380 AT3G14980.6 33.333 159 102 2 101 257 867 1023 6.74e-18 84.0
Msa0166380 AT3G14980.1 33.333 159 102 2 101 257 867 1023 6.74e-18 84.0
Msa0166380 AT3G14980.2 33.333 159 102 2 101 257 867 1023 6.74e-18 84.0
Msa0166380 AT5G63900.1 27.895 190 129 4 84 269 367 552 5.66e-16 78.2
Msa0166380 AT5G36670.4 27.429 175 105 4 109 265 801 971 3.83e-14 72.8
Msa0166380 AT5G36670.5 27.429 175 105 4 109 265 801 971 3.83e-14 72.8
Msa0166380 AT5G36670.1 27.429 175 105 4 109 265 811 981 3.84e-14 72.8
Msa0166380 AT5G36670.3 27.429 175 105 4 109 265 658 828 4.29e-14 72.8
Msa0166380 AT5G58610.10 31.481 108 72 1 98 203 849 956 8.83e-12 65.9
Msa0166380 AT5G58610.9 31.481 108 72 1 98 203 840 947 1.09e-11 65.5

Find 179 sgRNAs with CRISPR-Local

Find 635 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCATATGGAAATATAAATT+TGG 0.125727 1_4:-47682149 Msa0166380:CDS
CTTATTCCTTCCATGGTTTA+TGG 0.135452 1_4:-47683103 Msa0166380:CDS
TTCAATTTCACCCAATTTAA+AGG 0.164462 1_4:+47690072 None:intergenic
GGGTCTGCCCACCTTTAAAT+TGG 0.190230 1_4:-47690083 Msa0166380:five_prime_UTR
ATCTTATATCAATCTCATTA+AGG 0.198987 1_4:+47684402 None:intergenic
TAAACTCTCCGATAGAATTT+TGG 0.213754 1_4:+47689993 None:intergenic
AATTTGCAGACTCAGGATTT+TGG 0.214207 1_4:-47682983 Msa0166380:CDS
ACCTGTTCAATAATGTTAAA+TGG 0.217079 1_4:+47686429 None:intergenic
TGAAACCAGGCCGTTGCTTT+TGG 0.223567 1_4:-47684348 Msa0166380:CDS
ATAACATCCAAAAGAGATTC+AGG 0.231457 1_4:+47684458 None:intergenic
GATTCCATGACCTCAGTATT+TGG 0.236015 1_4:+47690117 None:intergenic
TGCTCACTGCCTTCAGTAAT+TGG 0.240529 1_4:-47689427 Msa0166380:intron
ACCAGTTGAGATTGTACTTT+TGG 0.253066 1_4:+47690522 None:intergenic
TGGCAGATGCTTTAGCTAAA+TGG 0.257488 1_4:-47689709 Msa0166380:five_prime_UTR
AAAAGCAACGGCCTGGTTTC+AGG 0.258105 1_4:+47684350 None:intergenic
TTGTGTCTTGTAGCAATTAA+TGG 0.261646 1_4:+47682781 None:intergenic
GAAACTCCCTGAATCTCTTT+TGG 0.272070 1_4:-47684465 Msa0166380:CDS
TATACCATGTTGAAAAGATA+TGG 0.297372 1_4:+47686454 None:intergenic
TTATTCCTTCCATGGTTTAT+GGG 0.317509 1_4:-47683102 Msa0166380:intron
ACACTCAAAGTAATTGATAT+TGG 0.324075 1_4:-47686606 Msa0166380:five_prime_UTR
CCCAAATTTATATTTCCATA+TGG 0.331457 1_4:+47682148 None:intergenic
TCATGGAATCCGAGATTTCT+TGG 0.333676 1_4:-47690104 Msa0166380:five_prime_UTR
CCATATGGAAATATAAATTT+GGG 0.335557 1_4:-47682148 Msa0166380:CDS
TGGCATGTTATCTCTTTGAT+TGG 0.339013 1_4:-47689606 Msa0166380:five_prime_UTR
AATTAGTGAGTTAGTGAATC+AGG 0.345071 1_4:-47690199 Msa0166380:five_prime_UTR
CACGAGAAATCTGTATAAAA+AGG 0.347780 1_4:-47681805 Msa0166380:CDS
ATAAGATGGAGATTTGTTAA+TGG 0.350125 1_4:-47684386 Msa0166380:CDS
GCCATTTAACATTATTGAAC+AGG 0.352493 1_4:-47686430 Msa0166380:intron
GCCAAAGTTTCATATCAAAA+TGG 0.357308 1_4:+47690394 None:intergenic
GGCAGATGCTTTAGCTAAAT+GGG 0.359621 1_4:-47689708 Msa0166380:five_prime_UTR
AAGAAGCAGCATATATATAT+TGG 0.363079 1_4:-47689479 Msa0166380:five_prime_UTR
AAACCCTAGCCGATCCTTCA+TGG 0.363342 1_4:-47691309 Msa0166380:five_prime_UTR
TGTGTCTTGTAGCAATTAAT+GGG 0.364668 1_4:+47682782 None:intergenic
TCTTATATCAATCTCATTAA+GGG 0.370075 1_4:+47684403 None:intergenic
CACATTCCTTTGGAGTTCTC+AGG 0.376454 1_4:+47687220 None:intergenic
AAAGAACTGCCAACAGTTGA+TGG 0.385458 1_4:-47681891 Msa0166380:CDS
ATGAAGGATCGGCTAGGGTT+TGG 0.385918 1_4:+47691311 None:intergenic
CAATGCACGAGAACAATGTT+TGG 0.387117 1_4:+47682234 None:intergenic
GAAAAGATATGGGAACATTC+TGG 0.388438 1_4:+47686465 None:intergenic
AATATAAATTTGGGTTTAGC+AGG 0.388453 1_4:-47682139 Msa0166380:CDS
GTGTTAAATACTTCTTTGAT+TGG 0.390194 1_4:+47690478 None:intergenic
AACTCTTTCAAGTATTGATC+TGG 0.390208 1_4:-47685803 Msa0166380:CDS
GGTCTGCCCACCTTTAAATT+GGG 0.390565 1_4:-47690082 Msa0166380:five_prime_UTR
CATAAACCATGGAAGGAATA+AGG 0.392929 1_4:+47683104 None:intergenic
AAAGCAAGAGGGTATATGTT+TGG 0.395383 1_4:-47684429 Msa0166380:CDS
ATCATCAACTTGTTAAAACT+TGG 0.401963 1_4:-47686525 Msa0166380:five_prime_UTR
GCCTATGCGATTATTCTTGT+GGG 0.404956 1_4:-47686226 Msa0166380:exon
AAGAAGTTCAGCTGTGATAA+TGG 0.410981 1_4:+47689937 None:intergenic
CAATAGTCAACACATTCCTT+TGG 0.415572 1_4:+47687210 None:intergenic
TCAGTAGCTGCGTCAACTAT+AGG 0.418977 1_4:+47683133 None:intergenic
TTGGCAGTTCTTTCTAAAGT+TGG 0.421301 1_4:+47681901 None:intergenic
TGGTGACATTAGATTGTGTT+TGG 0.430303 1_4:-47690263 Msa0166380:five_prime_UTR
CATGGAATCCGAGATTTCTT+GGG 0.438544 1_4:-47690103 Msa0166380:five_prime_UTR
ACTTGTTAAAACTTGGATGA+AGG 0.440194 1_4:-47686518 Msa0166380:five_prime_UTR
AACTTACGTTGAATATTGAC+AGG 0.442245 1_4:+47684321 None:intergenic
GACAGTTATGCTTCACAAAT+CGG 0.444606 1_4:-47681858 Msa0166380:CDS
TAGATTGTGTTTGGAAAGCT+AGG 0.445799 1_4:-47690254 Msa0166380:five_prime_UTR
AGTGTACTGTGCATTATTAA+TGG 0.449624 1_4:-47682957 Msa0166380:CDS
TGCCTATGCGATTATTCTTG+TGG 0.456514 1_4:-47686227 Msa0166380:exon
CGGAAGCAGTTGATTATCTC+AGG 0.457832 1_4:-47689844 Msa0166380:five_prime_UTR
TGTCATGATAGCTTCACAAT+TGG 0.458596 1_4:+47681712 None:intergenic
AAGAAAATATATACCTGCTC+AGG 0.459137 1_4:+47682110 None:intergenic
TATTGATTTCAAGTGGTTGA+GGG 0.461509 1_4:-47686641 Msa0166380:intron
TGGTATCTGCGGGCATGCTA+CGG 0.464986 1_4:-47682831 Msa0166380:CDS
ACTAAGGATGAAGGGGATGA+AGG 0.467198 1_4:-47686567 Msa0166380:five_prime_UTR
ATGCGATTATTCTTGTGGGC+TGG 0.467925 1_4:-47686222 Msa0166380:CDS
GAAACTTTGGCAGGAGCTGT+TGG 0.468092 1_4:-47690382 Msa0166380:five_prime_UTR
TCCAAAAGTACAATCTCAAC+TGG 0.468811 1_4:-47690523 Msa0166380:five_prime_UTR
ATGAAATAACACGACGGTAT+CGG 0.469603 1_4:+47691279 None:intergenic
CTTGTTAAAACTTGGATGAA+GGG 0.469982 1_4:-47686517 Msa0166380:five_prime_UTR
CTAAGGATGAAGGGGATGAA+GGG 0.472128 1_4:-47686566 Msa0166380:five_prime_UTR
GGGTTAAGTGCAAGTTATGC+TGG 0.474253 1_4:-47690024 Msa0166380:five_prime_UTR
CTGAAGAAGCAGAATCCATA+TGG 0.474283 1_4:-47682163 Msa0166380:CDS
TTATTGATTTCAAGTGGTTG+AGG 0.477158 1_4:-47686642 Msa0166380:intron
GAGATGTAGGAAGAGCTTAC+TGG 0.479981 1_4:-47681586 Msa0166380:three_prime_UTR
CATTGTTCTCGTGCATTGAA+AGG 0.483352 1_4:-47682229 Msa0166380:CDS
TGCTTAATTTCAGGCAGCAA+AGG 0.487320 1_4:-47690572 Msa0166380:intron
AAAAGAATAAGATAAAGCTC+AGG 0.488976 1_4:+47681763 None:intergenic
GATTCTGCTTCTTCAGCAGC+TGG 0.489139 1_4:+47682170 None:intergenic
TTAATGAGATTGATATAAGA+TGG 0.490803 1_4:-47684400 Msa0166380:CDS
TCCTCCAAATACTGAGGTCA+TGG 0.492512 1_4:-47690121 Msa0166380:five_prime_UTR
ACGTGACCTTATTCCTTCCA+TGG 0.495736 1_4:-47683110 Msa0166380:CDS
ATGTCGCAGAACTCATGAAT+TGG 0.500945 1_4:-47690175 Msa0166380:five_prime_UTR
CATTCCTTCACTAAGGATGA+AGG 0.501159 1_4:-47686576 Msa0166380:five_prime_UTR
ATACCATGTTGAAAAGATAT+GGG 0.501984 1_4:+47686455 None:intergenic
GCCTTTAGATGAAATTGAAA+AGG 0.502488 1_4:-47686317 Msa0166380:intron
TTAAATTGGCTCTAGACAAT+GGG 0.510220 1_4:-47689898 Msa0166380:five_prime_UTR
TTGGCATATAATGCACATCA+AGG 0.511800 1_4:-47689460 Msa0166380:five_prime_UTR
ATTAAATTGGCTCTAGACAA+TGG 0.513231 1_4:-47689899 Msa0166380:five_prime_UTR
CGACTGGCATTCCTTCACTA+AGG 0.517064 1_4:-47686583 Msa0166380:five_prime_UTR
AGGAAGGAAAATACTGATGT+GGG 0.518380 1_4:-47686297 Msa0166380:five_prime_UTR
GGCCTCCAAAAGCAACGGCC+TGG 0.519244 1_4:+47684343 None:intergenic
TCTTACCCATAAACCATGGA+AGG 0.523021 1_4:+47683097 None:intergenic
AACAGTTGATGGCATTCAAA+GGG 0.524220 1_4:-47681880 Msa0166380:CDS
TAACATCCAAAAGAGATTCA+GGG 0.524976 1_4:+47684459 None:intergenic
CAACAGTTGATGGCATTCAA+AGG 0.527248 1_4:-47681881 Msa0166380:CDS
GTTCTCGTGCATTGAAAGGC+TGG 0.529132 1_4:-47682225 Msa0166380:CDS
ATACCCACGGAGAAGAATTC+CGG 0.529250 1_4:+47691161 None:intergenic
AAGGATCGGCTAGGGTTTGG+AGG 0.531070 1_4:+47691314 None:intergenic
ACAAATCGGTGCCTCGATGT+CGG 0.531461 1_4:-47681844 Msa0166380:CDS
AAACTTTGGCAGGAGCTGTT+GGG 0.532809 1_4:-47690381 Msa0166380:five_prime_UTR
CTTTGATTGGCACTCGAGGA+AGG 0.538329 1_4:+47690491 None:intergenic
TCCACTCAACAATGTTACCT+TGG 0.543032 1_4:+47690334 None:intergenic
TTGTTAAAACTTGGATGAAG+GGG 0.546476 1_4:-47686516 Msa0166380:five_prime_UTR
CTTTGAATGCCATCAACTGT+TGG 0.549216 1_4:+47681882 None:intergenic
AGTTCATCTGTGGTATCTGC+GGG 0.549370 1_4:-47682841 Msa0166380:CDS
TATTATTGAATCAGACTCTA+CGG 0.550387 1_4:-47689864 Msa0166380:five_prime_UTR
CAGACGGAATTTGCAGACTC+AGG 0.551119 1_4:-47682990 Msa0166380:CDS
GGTCGGAGGCCATGAAGGAT+CGG 0.552187 1_4:+47691300 None:intergenic
TTAGATGAAATTGAAAAGGA+AGG 0.552449 1_4:-47686313 Msa0166380:intron
AATTTCACCCAATTTAAAGG+TGG 0.556608 1_4:+47690075 None:intergenic
ACTTACATTTGAGCATCCAT+AGG 0.559483 1_4:-47686134 Msa0166380:intron
AGGCCATGAAGGATCGGCTA+GGG 0.559745 1_4:+47691306 None:intergenic
ATCCCCTTCATCCTTAGTGA+AGG 0.563410 1_4:+47686572 None:intergenic
AATTCCGGTGCGGTGGTCGA+TGG 0.563463 1_4:+47691176 None:intergenic
CCTCAGGCCTCACCTTTCCA+CGG 0.564167 1_4:+47682755 None:intergenic
TAGCAGGACGAAACCTGAGC+AGG 0.567038 1_4:-47682123 Msa0166380:intron
AAGGAAGGAAAATACTGATG+TGG 0.567157 1_4:-47686298 Msa0166380:five_prime_UTR
TGGGCAGACCCAAGAAATCT+CGG 0.568421 1_4:+47690095 None:intergenic
CTTCAGCAGCTGGTAACACA+AGG 0.572407 1_4:+47682180 None:intergenic
AAGTTCATCTGTGGTATCTG+CGG 0.573259 1_4:-47682842 Msa0166380:CDS
TGTGATGGTGCTGTGAATCA+AGG 0.575441 1_4:-47690048 Msa0166380:five_prime_UTR
AAGGTTCTTCACATTCAAGA+AGG 0.575726 1_4:+47682199 None:intergenic
ATTCCTTCACTAAGGATGAA+GGG 0.575728 1_4:-47686575 Msa0166380:five_prime_UTR
CTTATATCAATCTCATTAAG+GGG 0.577053 1_4:+47684404 None:intergenic
GTATCGGTCGGAGGCCATGA+AGG 0.577862 1_4:+47691295 None:intergenic
CTACAGAGAAGCAAATAAAG+TGG 0.578768 1_4:-47689729 Msa0166380:five_prime_UTR
ATTTCACCCAATTTAAAGGT+GGG 0.579185 1_4:+47690076 None:intergenic
AGTGTTATCCAAAATTCTAT+CGG 0.582255 1_4:-47690001 Msa0166380:five_prime_UTR
ACTATATTATGCAGGGAGAG+AGG 0.582725 1_4:-47687256 Msa0166380:intron
AAGTTGCTTCTCCTGAAACC+AGG 0.585700 1_4:-47684361 Msa0166380:CDS
AAGTAATTGATATTGGCGAC+TGG 0.585836 1_4:-47686599 Msa0166380:five_prime_UTR
GTCACCATCGACCACCGCAC+CGG 0.589367 1_4:-47691180 Msa0166380:five_prime_UTR
CTCTCATAATCTCAACGTGT+TGG 0.591329 1_4:+47687185 None:intergenic
TCCAAGGTAACATTGTTGAG+TGG 0.592664 1_4:-47690335 Msa0166380:five_prime_UTR
GCACCGGAATTCTTCTCCGT+GGG 0.593552 1_4:-47691164 Msa0166380:intron
TTCCTTCACTAAGGATGAAG+GGG 0.594491 1_4:-47686574 Msa0166380:five_prime_UTR
TAAGGATGAAGGGGATGAAG+GGG 0.594799 1_4:-47686565 Msa0166380:five_prime_UTR
TCTTTCAAGTATTGATCTGG+AGG 0.595258 1_4:-47685800 Msa0166380:CDS
TGAGAGGAGTAAGATCTGAC+AGG 0.595664 1_4:-47687168 Msa0166380:intron
AAAGAATAAGATAAAGCTCA+GGG 0.596731 1_4:+47681764 None:intergenic
TGGGTGAAATTGAATTGTGA+TGG 0.597428 1_4:-47690063 Msa0166380:five_prime_UTR
GGAGAAGAATTCCGGTGCGG+TGG 0.597879 1_4:+47691169 None:intergenic
AGAGTTCAGATGATAAGTGT+TGG 0.601080 1_4:+47689509 None:intergenic
GAGGCCATGAAGGATCGGCT+AGG 0.603679 1_4:+47691305 None:intergenic
CGCACCGGAATTCTTCTCCG+TGG 0.604759 1_4:-47691165 Msa0166380:five_prime_UTR
GCAGATGCTTTAGCTAAATG+GGG 0.609226 1_4:-47689707 Msa0166380:five_prime_UTR
ACTTCTTTGATTGGCACTCG+AGG 0.609949 1_4:+47690487 None:intergenic
AAAGTCATACCAATTACTGA+AGG 0.615016 1_4:+47689418 None:intergenic
GACAGGGCCTCCAAAAGCAA+CGG 0.618009 1_4:+47684338 None:intergenic
TCCATGACCTCAGTATTTGG+AGG 0.620401 1_4:+47690120 None:intergenic
TGGCATATAATGCACATCAA+GGG 0.621018 1_4:-47689459 Msa0166380:five_prime_UTR
GCAGTTGATTATCTCAGGCG+TGG 0.622685 1_4:-47689839 Msa0166380:five_prime_UTR
TCGCAGAACTCATGAATTGG+TGG 0.625167 1_4:-47690172 Msa0166380:five_prime_UTR
ACAACATCAAAATAGTGAGT+CGG 0.630081 1_4:+47689668 None:intergenic
CTCGTGCATTGAAAGGCTGG+TGG 0.635327 1_4:-47682222 Msa0166380:CDS
CTGGCCTTGAAGTTCATCTG+TGG 0.641312 1_4:-47682851 Msa0166380:intron
TGAGTGGAGAATCAAATTTG+TGG 0.646612 1_4:-47690283 Msa0166380:five_prime_UTR
AACACGACGGTATCGGTCGG+AGG 0.648325 1_4:+47691286 None:intergenic
CAGATGCTTTAGCTAAATGG+GGG 0.649735 1_4:-47689706 Msa0166380:five_prime_UTR
AAAACACCTGAGAACTCCAA+AGG 0.650009 1_4:-47687226 Msa0166380:five_prime_UTR
AAGACACAAGAACCGTGGAA+AGG 0.652304 1_4:-47682767 Msa0166380:intron
AAATAAACCAATCAATCCCA+CGG 0.653017 1_4:+47691217 None:intergenic
CAACACGTTGAGATTATGAG+AGG 0.657644 1_4:-47687184 Msa0166380:five_prime_UTR
GATGGTGCTGTGAATCAAGG+TGG 0.664465 1_4:-47690045 Msa0166380:five_prime_UTR
GGAAGGAAAATACTGATGTG+GGG 0.670018 1_4:-47686296 Msa0166380:five_prime_UTR
GCCCACAAGAATAATCGCAT+AGG 0.672975 1_4:+47686225 None:intergenic
TGCTTGATAAATCTTGTGAG+TGG 0.677614 1_4:-47690299 Msa0166380:five_prime_UTR
TCATTCTCCTCCAAATACTG+AGG 0.678592 1_4:-47690127 Msa0166380:five_prime_UTR
AATAACACGACGGTATCGGT+CGG 0.686515 1_4:+47691283 None:intergenic
ATGGTGCTGTGAATCAAGGT+GGG 0.690520 1_4:-47690044 Msa0166380:five_prime_UTR
TGGATTTGAATGTGTCTCAG+AGG 0.699142 1_4:-47686202 Msa0166380:CDS
ACTTACGTTGAATATTGACA+GGG 0.701623 1_4:+47684322 None:intergenic
GTTGTCAAATGTATAGAACA+CGG 0.707200 1_4:+47686259 None:intergenic
TTATGATGCAGAGATGTCAG+TGG 0.721555 1_4:-47685847 Msa0166380:intron
GCTACAAGACACAAGAACCG+TGG 0.728402 1_4:-47682772 Msa0166380:CDS
CACGGAGAAGAATTCCGGTG+CGG 0.742215 1_4:+47691166 None:intergenic
TGAAGAATGAAATAACACGA+CGG 0.754863 1_4:+47691273 None:intergenic
CTATGAATGATCCGACATCG+AGG 0.764887 1_4:+47681833 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATAAAATAAATAAAAAA+TGG + chr1_4:47686274-47686293 None:intergenic 0.0%
!!! TTTTTAAAAATACCAAAAAA+TGG + chr1_4:47685899-47685918 None:intergenic 10.0%
!!! TTTTTTTTAAACAAATATTG+TGG - chr1_4:47685963-47685982 Msa0166380:intron 10.0%
!! AAAAAAAAAAAATGTAAATC+TGG - chr1_4:47686054-47686073 Msa0166380:intron 10.0%
!!! AAATACCAAAATTTTAATAA+GGG + chr1_4:47690269-47690288 None:intergenic 10.0%
!!! AAAATACCAAAATTTTAATA+AGG + chr1_4:47690270-47690289 None:intergenic 10.0%
!!! TATTTTTCAAGGTATTAAAT+TGG - chr1_4:47683021-47683040 Msa0166380:intron 15.0%
!!! ATTTTTTTTATGACGAAAAA+GGG + chr1_4:47683378-47683397 None:intergenic 15.0%
!!! TATTTTTTTTATGACGAAAA+AGG + chr1_4:47683379-47683398 None:intergenic 15.0%
!!! TTTTCGTCATAAAAAAAATA+TGG - chr1_4:47683379-47683398 Msa0166380:intron 15.0%
!! AATATCAAACTTCATAATAT+AGG - chr1_4:47683748-47683767 Msa0166380:intron 15.0%
!! ATTTATTAACTTCTTGAATA+TGG - chr1_4:47683936-47683955 Msa0166380:intron 15.0%
!! TATAGTAAAAAAAAAAAGGA+GGG + chr1_4:47685663-47685682 None:intergenic 15.0%
!! ATATAGTAAAAAAAAAAAGG+AGG + chr1_4:47685664-47685683 None:intergenic 15.0%
!!! TTTTTTTTACTATATTATGC+AGG - chr1_4:47685669-47685688 Msa0166380:intron 15.0%
!!! TTTTTTTACTATATTATGCA+GGG - chr1_4:47685670-47685689 Msa0166380:intron 15.0%
!! AATGGAACAAAATAAATAAA+TGG + chr1_4:47685881-47685900 None:intergenic 15.0%
!!! ATTTATTTTGTTCCATTTTT+TGG - chr1_4:47685884-47685903 Msa0166380:intron 15.0%
!!! TTTTATTTATTGATTTCAAG+TGG - chr1_4:47686285-47686304 Msa0166380:five_prime_UTR 15.0%
!! TTATAAATCAAAGTAAAAGA+TGG + chr1_4:47686978-47686997 None:intergenic 15.0%
!! ATAGAATTAAGAATTACAAT+GGG + chr1_4:47687001-47687020 None:intergenic 15.0%
!! AATAGAATTAAGAATTACAA+TGG + chr1_4:47687002-47687021 None:intergenic 15.0%
!!! TCTTCTAAATATTTTTCATA+GGG + chr1_4:47687502-47687521 None:intergenic 15.0%
!!! TTCTTCTAAATATTTTTCAT+AGG + chr1_4:47687503-47687522 None:intergenic 15.0%
!! TAAGTTACAAAAAAATTAAG+TGG + chr1_4:47690483-47690502 None:intergenic 15.0%
!!! TTTTTTTGTAACTTAATTTC+TGG - chr1_4:47690488-47690507 Msa0166380:five_prime_UTR 15.0%
!!! TTTTTTGTAACTTAATTTCT+GGG - chr1_4:47690489-47690508 Msa0166380:five_prime_UTR 15.0%
!!! ATTATTTATTACCTTTTCTT+CGG - chr1_4:47690941-47690960 Msa0166380:intron 15.0%
!!! ATTTTATATAAATGAGATGT+AGG - chr1_4:47691334-47691353 Msa0166380:five_prime_UTR 15.0%
!! AATAGAACAAGAATAATATG+AGG + chr1_4:47681814-47681833 None:intergenic 20.0%
!!! ATGTTGCGTTTTATTTTATT+TGG - chr1_4:47681939-47681958 Msa0166380:intron 20.0%
!!! TTTATTTTATTTGGTGTTTC+AGG - chr1_4:47681948-47681967 Msa0166380:intron 20.0%
!!! TTATTTTATTTGGTGTTTCA+GGG - chr1_4:47681949-47681968 Msa0166380:intron 20.0%
!! AATTGCTAAAAACTGAAATA+AGG + chr1_4:47682058-47682077 None:intergenic 20.0%
!!! TATATTTGAATTTTGTCTAG+AGG - chr1_4:47682151-47682170 Msa0166380:CDS 20.0%
!! GAATTATATACAATGTTACT+TGG - chr1_4:47682221-47682240 Msa0166380:CDS 20.0%
!!! AATTTAAGTAGTTTTATCCA+AGG - chr1_4:47682582-47682601 Msa0166380:intron 20.0%
!!! TTTTTTTTATGACGAAAAAG+GGG + chr1_4:47683377-47683396 None:intergenic 20.0%
!!! TTTCATCACATTTTACATTA+TGG - chr1_4:47683535-47683554 Msa0166380:intron 20.0%
!!! AAAGGCATTTAATTTATTTC+AGG + chr1_4:47683668-47683687 None:intergenic 20.0%
!! GAAATAAATTAAATGCCTTT+CGG - chr1_4:47683668-47683687 Msa0166380:intron 20.0%
!!! ACATTTTTACATAATTCTGA+TGG - chr1_4:47684069-47684088 Msa0166380:intron 20.0%
!! AAAATTGAAGATACATGTTT+AGG + chr1_4:47684138-47684157 None:intergenic 20.0%
!! AGTGAATAAACACTAATATA+AGG - chr1_4:47684180-47684199 Msa0166380:intron 20.0%
!!! TTCTTTTTTGGATATTTGAA+AGG + chr1_4:47684293-47684312 None:intergenic 20.0%
!! TAACAACTTTCTAAATGTAA+AGG + chr1_4:47684820-47684839 None:intergenic 20.0%
!!! ATCTTGGCAAAATTTAATTT+TGG - chr1_4:47685252-47685271 Msa0166380:intron 20.0%
!! ATAGTAAAAAAAAAAAGGAG+GGG + chr1_4:47685662-47685681 None:intergenic 20.0%
!! AAAAAACGTATTTCTTCATA+TGG + chr1_4:47685793-47685812 None:intergenic 20.0%
!! GACAAAAATAAAAAATCATG+TGG + chr1_4:47685852-47685871 None:intergenic 20.0%
!!! TGAAAAATCATGTCAATTTT+AGG + chr1_4:47686842-47686861 None:intergenic 20.0%
!!! TAAGATATGCATAAGTTTTA+GGG + chr1_4:47686882-47686901 None:intergenic 20.0%
!!! ATAAGATATGCATAAGTTTT+AGG + chr1_4:47686883-47686902 None:intergenic 20.0%
!! AATACTTCAAATAGTTCTTT+GGG + chr1_4:47687168-47687187 None:intergenic 20.0%
!! TTCAATTAGAATAAGAAACA+AGG + chr1_4:47687209-47687228 None:intergenic 20.0%
!!! CTTCTAAATATTTTTCATAG+GGG + chr1_4:47687501-47687520 None:intergenic 20.0%
!!! ATACTACTTAATTTTAACTG+TGG - chr1_4:47687527-47687546 Msa0166380:intron 20.0%
!!! TACTACTTAATTTTAACTGT+GGG - chr1_4:47687528-47687547 Msa0166380:intron 20.0%
!! TCTTATATCAATCTCATTAA+GGG + chr1_4:47688533-47688552 None:intergenic 20.0%
!! ATCTTATATCAATCTCATTA+AGG + chr1_4:47688534-47688553 None:intergenic 20.0%
!! TTAATGAGATTGATATAAGA+TGG - chr1_4:47688533-47688552 Msa0166380:intron 20.0%
!! GAAAATGAAGAAGAAATATA+AGG + chr1_4:47688646-47688665 None:intergenic 20.0%
!!! TTTTCAAATATTGCACAATT+CGG - chr1_4:47688985-47689004 Msa0166380:intron 20.0%
!! AGAAAAATAGAAATGCAAAA+TGG + chr1_4:47689705-47689724 None:intergenic 20.0%
!!! TTTGCATTTCTATTTTTCTT+TGG - chr1_4:47689706-47689725 Msa0166380:five_prime_UTR 20.0%
!!! TTGCATTTCTATTTTTCTTT+GGG - chr1_4:47689707-47689726 Msa0166380:five_prime_UTR 20.0%
!!! ATGTTCACATTTTATTTAAC+TGG - chr1_4:47690063-47690082 Msa0166380:five_prime_UTR 20.0%
!!! AAAATTTTAATAAGGGAAAG+TGG + chr1_4:47690262-47690281 None:intergenic 20.0%
!!! ACTTTCCCTTATTAAAATTT+TGG - chr1_4:47690261-47690280 Msa0166380:five_prime_UTR 20.0%
!!! AATTTTGGTATTTTTTTCGA+TGG - chr1_4:47690276-47690295 Msa0166380:five_prime_UTR 20.0%
!!! ATTTTGGTATTTTTTTCGAT+GGG - chr1_4:47690277-47690296 Msa0166380:five_prime_UTR 20.0%
!!! ATCATAATTTTATTTGCTCT+TGG - chr1_4:47690528-47690547 Msa0166380:five_prime_UTR 20.0%
!! TCCATATGGAAATATAAATT+TGG - chr1_4:47690784-47690803 Msa0166380:intron 20.0%
!! CCATATGGAAATATAAATTT+GGG - chr1_4:47690785-47690804 Msa0166380:intron 20.0%
!!! CATTTTGTTTTACATTTCTA+TGG - chr1_4:47690899-47690918 Msa0166380:intron 20.0%
!!! GTGTTTTTTCTTTTCTTTTG+AGG + chr1_4:47681590-47681609 None:intergenic 25.0%
!!! ATTGGTTTATTTTCAGATCT+GGG - chr1_4:47681727-47681746 Msa0166380:three_prime_UTR 25.0%
! TATTGTGAAGAAAAAGTTGA+TGG - chr1_4:47681873-47681892 Msa0166380:CDS 25.0%
!! ATTGTGAAGAAAAAGTTGAT+GGG - chr1_4:47681874-47681893 Msa0166380:CDS 25.0%
! GGATAGAAGTAAATTAGTAT+TGG - chr1_4:47682196-47682215 Msa0166380:CDS 25.0%
!!! ATAGTACTTTTGGTTTCTTT+GGG - chr1_4:47682255-47682274 Msa0166380:intron 25.0%
!! TTTTACTTGTGCTTAATTTC+AGG - chr1_4:47682352-47682371 Msa0166380:intron 25.0%
! GTGTTAAATACTTCTTTGAT+TGG + chr1_4:47682458-47682477 None:intergenic 25.0%
! TTCAATTTCACCCAATTTAA+AGG + chr1_4:47682864-47682883 None:intergenic 25.0%
! AGTGTTATCCAAAATTCTAT+CGG - chr1_4:47682932-47682951 Msa0166380:intron 25.0%
! TATTATTGAATCAGACTCTA+CGG - chr1_4:47683069-47683088 Msa0166380:intron 25.0%
!! AAAACAGTTTTACAGAAATC+AGG + chr1_4:47683292-47683311 None:intergenic 25.0%
!!! ATTGGTTGTTGTTTGTTTTT+TGG - chr1_4:47683345-47683364 Msa0166380:intron 25.0%
!!! TTGGTTGTTGTTTGTTTTTT+GGG - chr1_4:47683346-47683365 Msa0166380:intron 25.0%
! AAGAAGCAGCATATATATAT+TGG - chr1_4:47683454-47683473 Msa0166380:intron 25.0%
! ACACAAATCTAAATTGATCT+AGG - chr1_4:47683610-47683629 Msa0166380:intron 25.0%
!! GCATTTAATTTATTTCAGGT+TGG + chr1_4:47683664-47683683 None:intergenic 25.0%
! TTAAGTGAAAGGAAAATATG+AGG + chr1_4:47683730-47683749 None:intergenic 25.0%
! GAAGTTTGATATTAAGTGAA+AGG + chr1_4:47683741-47683760 None:intergenic 25.0%
!! ATGGATTACTTAACTATGAA+CGG - chr1_4:47683955-47683974 Msa0166380:intron 25.0%
! AAGATATTAACATGCAAAGT+TGG + chr1_4:47684011-47684030 None:intergenic 25.0%
! AACTTTGCATGTTAATATCT+TGG - chr1_4:47684010-47684029 Msa0166380:intron 25.0%
! ACTTTGCATGTTAATATCTT+GGG - chr1_4:47684011-47684030 Msa0166380:intron 25.0%
! CATAATTCTGATGGAAATAA+TGG - chr1_4:47684078-47684097 Msa0166380:intron 25.0%
! AATATAAGGACTTCCATTAT+TGG - chr1_4:47684194-47684213 Msa0166380:intron 25.0%
!! TTTTAACGAATAGCCAATAA+TGG + chr1_4:47684210-47684229 None:intergenic 25.0%
! GGCTATTCGTTAAAAATATA+AGG - chr1_4:47684215-47684234 Msa0166380:intron 25.0%
!!! TAACTGTTTGTCTTCTTTTT+TGG + chr1_4:47684305-47684324 None:intergenic 25.0%
! AAGGGTAAGAATTTCTATAA+AGG - chr1_4:47684519-47684538 Msa0166380:intron 25.0%
! AGAATTTCTATAAAGGTGAT+TGG - chr1_4:47684526-47684545 Msa0166380:intron 25.0%
!! ATCTAAACTTGTTTGAGTAT+AGG - chr1_4:47684680-47684699 Msa0166380:intron 25.0%
!! TCTAAACTTGTTTGAGTATA+GGG - chr1_4:47684681-47684700 Msa0166380:intron 25.0%
!! CAGAGAAATTTGTTTGATAT+TGG + chr1_4:47684774-47684793 None:intergenic 25.0%
! AAATTGCTACTCCAATATAA+AGG - chr1_4:47684895-47684914 Msa0166380:intron 25.0%
! AATTGCTACTCCAATATAAA+GGG - chr1_4:47684896-47684915 Msa0166380:intron 25.0%
! TTGAACTAAAGTGGAAAATA+GGG + chr1_4:47684942-47684961 None:intergenic 25.0%
! TTTGAACTAAAGTGGAAAAT+AGG + chr1_4:47684943-47684962 None:intergenic 25.0%
! AAATAATATCGCTTTCTCAA+TGG + chr1_4:47684971-47684990 None:intergenic 25.0%
!! ATTTTTGTCTCTAATTCTGT+TGG - chr1_4:47684987-47685006 Msa0166380:intron 25.0%
!! TTTTTGTCTCTAATTCTGTT+GGG - chr1_4:47684988-47685007 Msa0166380:intron 25.0%
! AATAGTCTATGAGTATGATT+GGG + chr1_4:47685164-47685183 None:intergenic 25.0%
! AAATAGTCTATGAGTATGAT+TGG + chr1_4:47685165-47685184 None:intergenic 25.0%
!! AATTAAATTTTGCCAAGATC+AGG + chr1_4:47685251-47685270 None:intergenic 25.0%
! CATTTAATTATACATGAAGC+TGG + chr1_4:47685465-47685484 None:intergenic 25.0%
!!! TTTAATTTTCCCATATGCAA+AGG + chr1_4:47685527-47685546 None:intergenic 25.0%
! TAGTAAAAAAAAAAAGGAGG+GGG + chr1_4:47685661-47685680 None:intergenic 25.0%
!!! GAAAATGTTTGTTGTTTTCA+AGG + chr1_4:47686084-47686103 None:intergenic 25.0%
!! TATTAACACAGTTCATTTTC+AGG + chr1_4:47686125-47686144 None:intergenic 25.0%
! TGAAAATGAACTGTGTTAAT+AGG - chr1_4:47686124-47686143 Msa0166380:intron 25.0%
! ACACTCAAAGTAATTGATAT+TGG - chr1_4:47686327-47686346 Msa0166380:intron 25.0%
!!! ATCATCAACTTGTTAAAACT+TGG - chr1_4:47686408-47686427 Msa0166380:intron 25.0%
! ATACCATGTTGAAAAGATAT+GGG + chr1_4:47686481-47686500 None:intergenic 25.0%
! TATACCATGTTGAAAAGATA+TGG + chr1_4:47686482-47686501 None:intergenic 25.0%
! ACCTGTTCAATAATGTTAAA+TGG + chr1_4:47686507-47686526 None:intergenic 25.0%
! CAAATTAAGCAAGATAAAGA+TGG + chr1_4:47686557-47686576 None:intergenic 25.0%
!! TCCTTTTCAATTTCATCTAA+AGG + chr1_4:47686620-47686639 None:intergenic 25.0%
! TTAGATGAAATTGAAAAGGA+AGG - chr1_4:47686620-47686639 Msa0166380:five_prime_UTR 25.0%
!! TGTATATTTTACTTCCCTAA+CGG - chr1_4:47687028-47687047 Msa0166380:intron 25.0%
! CAATACTTCAAATAGTTCTT+TGG + chr1_4:47687169-47687188 None:intergenic 25.0%
! AAATTCATCATCAAAACCAT+TGG - chr1_4:47687263-47687282 Msa0166380:intron 25.0%
! TTGACTTTAAATACTACTTG+AGG - chr1_4:47687366-47687385 Msa0166380:intron 25.0%
! TGACTTTAAATACTACTTGA+GGG - chr1_4:47687367-47687386 Msa0166380:intron 25.0%
! TCTACCTAAAAAAAATGAAG+AGG - chr1_4:47687952-47687971 Msa0166380:intron 25.0%
!!! ATTGTCATTTTCATTGTTTC+TGG - chr1_4:47688062-47688081 Msa0166380:intron 25.0%
! ATTTCCTATGAATGTTAACA+AGG + chr1_4:47688127-47688146 None:intergenic 25.0%
! TCTTCAAATAAGGAAACTTT+GGG + chr1_4:47688170-47688189 None:intergenic 25.0%
! TTCTTCAAATAAGGAAACTT+TGG + chr1_4:47688171-47688190 None:intergenic 25.0%
!! AAAGTTTCCTTATTTGAAGA+AGG - chr1_4:47688170-47688189 Msa0166380:intron 25.0%
!! AAGTTTCCTTATTTGAAGAA+GGG - chr1_4:47688171-47688190 Msa0166380:intron 25.0%
! ATTATACCCTTCTTCAAATA+AGG + chr1_4:47688180-47688199 None:intergenic 25.0%
! TCATAAAATGGCATATTTGA+AGG - chr1_4:47688327-47688346 Msa0166380:intron 25.0%
!! CACAAGAATACATTCTATTT+TGG - chr1_4:47688420-47688439 Msa0166380:intron 25.0%
! TGTTATAAAGAAAAAGCAAG+AGG - chr1_4:47688492-47688511 Msa0166380:intron 25.0%
! GTTATAAAGAAAAAGCAAGA+GGG - chr1_4:47688493-47688512 Msa0166380:intron 25.0%
! CTTATATCAATCTCATTAAG+GGG + chr1_4:47688532-47688551 None:intergenic 25.0%
!!! ATAAGATGGAGATTTGTTAA+TGG - chr1_4:47688547-47688566 Msa0166380:intron 25.0%
! TCATGATCATAACTATATGT+AGG - chr1_4:47688664-47688683 Msa0166380:intron 25.0%
! CATGATCATAACTATATGTA+GGG - chr1_4:47688665-47688684 Msa0166380:intron 25.0%
!!! CTTGGTATTTTTGTTATTGT+TGG - chr1_4:47688737-47688756 Msa0166380:intron 25.0%
!! ATATACTTATGCTGACTATA+GGG + chr1_4:47688910-47688929 None:intergenic 25.0%
! TAAGATACTGCAATTGATAA+GGG + chr1_4:47689139-47689158 None:intergenic 25.0%
! TTAAGATACTGCAATTGATA+AGG + chr1_4:47689140-47689159 None:intergenic 25.0%
!!! TTATTTTATGGGAATTGAAG+TGG + chr1_4:47689293-47689312 None:intergenic 25.0%
!!! TGCATTTCTATTTTTCTTTG+GGG - chr1_4:47689708-47689727 Msa0166380:five_prime_UTR 25.0%
! AAGCATACAAATGTTCTAAT+AGG + chr1_4:47689866-47689885 None:intergenic 25.0%
!!! AATTTTTTCCTTGTTTCAAC+TGG - chr1_4:47689905-47689924 Msa0166380:five_prime_UTR 25.0%
! CATATTTGATATGACTCTTA+TGG - chr1_4:47690038-47690057 Msa0166380:five_prime_UTR 25.0%
! AGCAAATAAAATTATGATGC+AGG + chr1_4:47690526-47690545 None:intergenic 25.0%
! CCCAAATTTATATTTCCATA+TGG + chr1_4:47690788-47690807 None:intergenic 25.0%
!! AATATAAATTTGGGTTTAGC+AGG - chr1_4:47690794-47690813 Msa0166380:intron 25.0%
!! TTCTTGACTACTTACATTTT+AGG - chr1_4:47690841-47690860 Msa0166380:intron 25.0%
! AACAAAATGCTAGAATAAAG+TGG + chr1_4:47690888-47690907 None:intergenic 25.0%
! TATAAAAAGGTCACTCAAAA+GGG - chr1_4:47691141-47691160 Msa0166380:intron 25.0%
! AAAGAATAAGATAAAGCTCA+GGG + chr1_4:47691172-47691191 None:intergenic 25.0%
! AAAAGAATAAGATAAAGCTC+AGG + chr1_4:47691173-47691192 None:intergenic 25.0%
!!! AGCTTTATCTTATTCTTTTC+TGG - chr1_4:47691174-47691193 Msa0166380:five_prime_UTR 25.0%
! TTGGCTTCAAATAAAAAACT+TGG + chr1_4:47691205-47691224 None:intergenic 25.0%
TGAAGAATGAAATAACACGA+CGG + chr1_4:47681663-47681682 None:intergenic 30.0%
AAATAAACCAATCAATCCCA+CGG + chr1_4:47681719-47681738 None:intergenic 30.0%
!!! GATTGGTTTATTTTCAGATC+TGG - chr1_4:47681726-47681745 Msa0166380:three_prime_UTR 30.0%
GAATCATATTGTAGATCACT+CGG - chr1_4:47682091-47682110 Msa0166380:intron 30.0%
ACAGAAAAGATAAGGAATAG+AGG - chr1_4:47682175-47682194 Msa0166380:CDS 30.0%
! TACAATGTTACTTGGTTAAG+TGG - chr1_4:47682229-47682248 Msa0166380:CDS 30.0%
! TAAGTGGAAGATAGTACTTT+TGG - chr1_4:47682245-47682264 Msa0166380:CDS 30.0%
!!! GATAGTACTTTTGGTTTCTT+TGG - chr1_4:47682254-47682273 Msa0166380:intron 30.0%
! GCTTTTATACTCAAATGCAT+AGG + chr1_4:47682389-47682408 None:intergenic 30.0%
!! GCCATTTTGATATGAAACTT+TGG - chr1_4:47682538-47682557 Msa0166380:intron 30.0%
GCCAAAGTTTCATATCAAAA+TGG + chr1_4:47682542-47682561 None:intergenic 30.0%
! TTTTGATATGAAACTTTGGC+AGG - chr1_4:47682542-47682561 Msa0166380:intron 30.0%
AATTAGTGAGTTAGTGAATC+AGG - chr1_4:47682734-47682753 Msa0166380:intron 30.0%
ATTTCACCCAATTTAAAGGT+GGG + chr1_4:47682860-47682879 None:intergenic 30.0%
AATTTCACCCAATTTAAAGG+TGG + chr1_4:47682861-47682880 None:intergenic 30.0%
! TAAACTCTCCGATAGAATTT+TGG + chr1_4:47682943-47682962 None:intergenic 30.0%
! AGAGTTTATCTCAGCATTTT+CGG - chr1_4:47682955-47682974 Msa0166380:CDS 30.0%
!!! GAACTTCTTGCTATTTTTCA+AGG - chr1_4:47683010-47683029 Msa0166380:intron 30.0%
!! ATTAAATTGGCTCTAGACAA+TGG - chr1_4:47683034-47683053 Msa0166380:intron 30.0%
!! TTAAATTGGCTCTAGACAAT+GGG - chr1_4:47683035-47683054 Msa0166380:intron 30.0%
! TTTTAGATTGATGTCAGTCA+TGG - chr1_4:47683159-47683178 Msa0166380:intron 30.0%
ACAACATCAAAATAGTGAGT+CGG + chr1_4:47683268-47683287 None:intergenic 30.0%
!!! TGGTTGTTGTTTGTTTTTTG+GGG - chr1_4:47683347-47683366 Msa0166380:intron 30.0%
AAAGTCATACCAATTACTGA+AGG + chr1_4:47683518-47683537 None:intergenic 30.0%
ATTCAAATTCCTGAACTGTA+TGG - chr1_4:47683562-47683581 Msa0166380:intron 30.0%
!! TTGTTCCACTCACTATTTTT+AGG - chr1_4:47683832-47683851 Msa0166380:intron 30.0%
!! CTATTTCTGACTGATTTGAA+TGG - chr1_4:47683911-47683930 Msa0166380:intron 30.0%
TGGATTACTTAACTATGAAC+GGG - chr1_4:47683956-47683975 Msa0166380:intron 30.0%
! GTATGATGATGCTCTAATTT+GGG - chr1_4:47684100-47684119 Msa0166380:intron 30.0%
CTCTAATTTGGGTCTAAAAA+AGG - chr1_4:47684111-47684130 Msa0166380:intron 30.0%
TGCCTTCAATAAACATTCAA+CGG - chr1_4:47684240-47684259 Msa0166380:intron 30.0%
TACCGTTGAATGTTTATTGA+AGG + chr1_4:47684245-47684264 None:intergenic 30.0%
GTTAACAAAGAGTAATCCAA+CGG - chr1_4:47684321-47684340 Msa0166380:intron 30.0%
!! TGTGCATTTTGAAGAAACAA+TGG - chr1_4:47684349-47684368 Msa0166380:CDS 30.0%
!! CATTTTGAAGAAACAATGGA+AGG - chr1_4:47684353-47684372 Msa0166380:CDS 30.0%
!! TTGTTCTTCTAAAGTTACCA+AGG - chr1_4:47684439-47684458 Msa0166380:CDS 30.0%
! TCTAAAGTTACCAAGGTTTA+TGG - chr1_4:47684446-47684465 Msa0166380:CDS 30.0%
ATTGCTACTCCAATATAAAG+GGG - chr1_4:47684897-47684916 Msa0166380:intron 30.0%
TGTTAAGTACCCCTTTATAT+TGG + chr1_4:47684909-47684928 None:intergenic 30.0%
! TGGTGAATTTTGAACTAAAG+TGG + chr1_4:47684951-47684970 None:intergenic 30.0%
! TTCAGAGCTTTAGTATGATT+GGG + chr1_4:47685061-47685080 None:intergenic 30.0%
! TTTCAGAGCTTTAGTATGAT+TGG + chr1_4:47685062-47685081 None:intergenic 30.0%
GTTATATTATATTGCAGTGC+TGG - chr1_4:47685134-47685153 Msa0166380:intron 30.0%
! CGTATATTCGACAACATTTT+AGG - chr1_4:47685222-47685241 Msa0166380:intron 30.0%
TTGATGAATACCTTTGCATA+TGG - chr1_4:47685514-47685533 Msa0166380:intron 30.0%
TGATGAATACCTTTGCATAT+GGG - chr1_4:47685515-47685534 Msa0166380:intron 30.0%
GGGAAAATTAAAGAATGAAG+AGG - chr1_4:47685535-47685554 Msa0166380:intron 30.0%
ACAAATGTGAAGGAATAAGA+GGG + chr1_4:47685591-47685610 None:intergenic 30.0%
AACAAATGTGAAGGAATAAG+AGG + chr1_4:47685592-47685611 None:intergenic 30.0%
! TTAGTATCCCTCTATACTTT+TGG - chr1_4:47686001-47686020 Msa0166380:intron 30.0%
!! ACTTTTGGTTGTGCAATTTT+TGG - chr1_4:47686016-47686035 Msa0166380:intron 30.0%
!!! TGGAAGGTTTTAACTTTGAA+TGG + chr1_4:47686218-47686237 None:intergenic 30.0%
!! TTATTGATTTCAAGTGGTTG+AGG - chr1_4:47686291-47686310 Msa0166380:five_prime_UTR 30.0%
!! TATTGATTTCAAGTGGTTGA+GGG - chr1_4:47686292-47686311 Msa0166380:five_prime_UTR 30.0%
! ACTTGTTAAAACTTGGATGA+AGG - chr1_4:47686415-47686434 Msa0166380:intron 30.0%
CTTGTTAAAACTTGGATGAA+GGG - chr1_4:47686416-47686435 Msa0166380:intron 30.0%
TTGTTAAAACTTGGATGAAG+GGG - chr1_4:47686417-47686436 Msa0166380:intron 30.0%
GCCATTTAACATTATTGAAC+AGG - chr1_4:47686503-47686522 Msa0166380:five_prime_UTR 30.0%
GCCTTTAGATGAAATTGAAA+AGG - chr1_4:47686616-47686635 Msa0166380:five_prime_UTR 30.0%
GTTGTCAAATGTATAGAACA+CGG + chr1_4:47686677-47686696 None:intergenic 30.0%
!!! ATATGCATAAGTTTTAGGGT+AGG + chr1_4:47686878-47686897 None:intergenic 30.0%
! GTATATTTTACTTCCCTAAC+GGG - chr1_4:47687029-47687048 Msa0166380:intron 30.0%
!! AACTCTTTCAAGTATTGATC+TGG - chr1_4:47687130-47687149 Msa0166380:intron 30.0%
!! AAATAGTTCTTTGGGATTAC+AGG + chr1_4:47687160-47687179 None:intergenic 30.0%
!! TATTTGAAGTATTGATCTGC+AGG - chr1_4:47687175-47687194 Msa0166380:five_prime_UTR 30.0%
TGCAGATCAATAATTTCAAG+AGG + chr1_4:47687234-47687253 None:intergenic 30.0%
! ATATTTGCTGCAAAATGTGA+TGG - chr1_4:47687330-47687349 Msa0166380:intron 30.0%
!!! TACTTAATTTTAACTGTGGG+AGG - chr1_4:47687531-47687550 Msa0166380:intron 30.0%
!!! ACTTAATTTTAACTGTGGGA+GGG - chr1_4:47687532-47687551 Msa0166380:intron 30.0%
AAAGGACAAAATAGTTGTCA+CGG - chr1_4:47687606-47687625 Msa0166380:intron 30.0%
!!! CTCTCCTCTTCATTTTTTTT+AGG + chr1_4:47687959-47687978 None:intergenic 30.0%
TTCTCCTTGTTAACATTCAT+AGG - chr1_4:47688120-47688139 Msa0166380:intron 30.0%
TCAGATCGACAATGATTTAT+AGG - chr1_4:47688199-47688218 Msa0166380:intron 30.0%
TGTGAAAAGGAATATCATGT+GGG - chr1_4:47688292-47688311 Msa0166380:intron 30.0%
TGTCTTTCTTCATATATTGC+AGG - chr1_4:47688360-47688379 Msa0166380:intron 30.0%
TAACATCCAAAAGAGATTCA+GGG + chr1_4:47688477-47688496 None:intergenic 30.0%
ATAACATCCAAAAGAGATTC+AGG + chr1_4:47688478-47688497 None:intergenic 30.0%
ACTTACGTTGAATATTGACA+GGG + chr1_4:47688614-47688633 None:intergenic 30.0%
AACTTACGTTGAATATTGAC+AGG + chr1_4:47688615-47688634 None:intergenic 30.0%
TGAAGAAGAAATATAAGGAC+AGG + chr1_4:47688641-47688660 None:intergenic 30.0%
GAAAAGATACAATCATGCAA+AGG + chr1_4:47688799-47688818 None:intergenic 30.0%
! CATATACTTATGCTGACTAT+AGG + chr1_4:47688911-47688930 None:intergenic 30.0%
TTGATACAAATGTGAAGTTG+CGG + chr1_4:47689171-47689190 None:intergenic 30.0%
! AACCAGTAATGTATTTCTGT+TGG - chr1_4:47689239-47689258 Msa0166380:intron 30.0%
! ACCAGTAATGTATTTCTGTT+GGG - chr1_4:47689240-47689259 Msa0166380:intron 30.0%
TTCCCATAAAATAATTTCCC+TGG - chr1_4:47689299-47689318 Msa0166380:intron 30.0%
TCCCATAAAATAATTTCCCT+GGG - chr1_4:47689300-47689319 Msa0166380:intron 30.0%
!! ACCCAGGGAAATTATTTTAT+GGG + chr1_4:47689304-47689323 None:intergenic 30.0%
TATCAAACACTCTGAATCAT+GGG + chr1_4:47689434-47689453 None:intergenic 30.0%
AAATTCACACAAGTTATGGT+AGG + chr1_4:47689496-47689515 None:intergenic 30.0%
TGGAAAATTCACACAAGTTA+TGG + chr1_4:47689500-47689519 None:intergenic 30.0%
!! GCATTTCTATTTTTCTTTGG+GGG - chr1_4:47689709-47689728 Msa0166380:five_prime_UTR 30.0%
AGATCACTATTGTTGAACTT+TGG - chr1_4:47689753-47689772 Msa0166380:five_prime_UTR 30.0%
TGAACTTTGGTATTTGTTTC+AGG - chr1_4:47689766-47689785 Msa0166380:five_prime_UTR 30.0%
TTATTCCTTCCATGGTTTAT+GGG - chr1_4:47689831-47689850 Msa0166380:five_prime_UTR 30.0%
! ATTTTCTTACCCATAAACCA+TGG + chr1_4:47689843-47689862 None:intergenic 30.0%
AGTGTACTGTGCATTATTAA+TGG - chr1_4:47689976-47689995 Msa0166380:five_prime_UTR 30.0%
TGCATTATTAATGGTCAAGT+AGG - chr1_4:47689985-47690004 Msa0166380:five_prime_UTR 30.0%
TGTGTCTTGTAGCAATTAAT+GGG + chr1_4:47690154-47690173 None:intergenic 30.0%
TTGTGTCTTGTAGCAATTAA+TGG + chr1_4:47690155-47690174 None:intergenic 30.0%
! TTTTCGATGGGAATATAAAG+TGG - chr1_4:47690289-47690308 Msa0166380:five_prime_UTR 30.0%
AATATAAAGTGGTCATGGTA+AGG - chr1_4:47690300-47690319 Msa0166380:five_prime_UTR 30.0%
ATAAAATTATGATGCAGGCA+AGG + chr1_4:47690521-47690540 None:intergenic 30.0%
!!! ATTGCTCTGTTTTGATATAC+TGG - chr1_4:47690580-47690599 Msa0166380:intron 30.0%
!!! TTGCTCTGTTTTGATATACT+GGG - chr1_4:47690581-47690600 Msa0166380:intron 30.0%
TTGTTATAATTGACCTGAAC+AGG - chr1_4:47690669-47690688 Msa0166380:intron 30.0%
TGTTATAATTGACCTGAACA+GGG - chr1_4:47690670-47690689 Msa0166380:intron 30.0%
AAGAAAATATATACCTGCTC+AGG + chr1_4:47690826-47690845 None:intergenic 30.0%
TTCTTAAAACACCGAAGAAA+AGG + chr1_4:47690955-47690974 None:intergenic 30.0%
CACGAGAAATCTGTATAAAA+AGG - chr1_4:47691128-47691147 Msa0166380:intron 30.0%
GTATAAAAAGGTCACTCAAA+AGG - chr1_4:47691140-47691159 Msa0166380:intron 30.0%
ATAAAAAGGTCACTCAAAAG+GGG - chr1_4:47691142-47691161 Msa0166380:intron 30.0%
ATGAAATAACACGACGGTAT+CGG + chr1_4:47681657-47681676 None:intergenic 35.0%
GTCATGAAAATTCATACCCA+CGG + chr1_4:47681788-47681807 None:intergenic 35.0%
TTGTAGATCACTCGGTAAAT+TGG - chr1_4:47682099-47682118 Msa0166380:intron 35.0%
CTAGAGGAACAGAAAAGATA+AGG - chr1_4:47682167-47682186 Msa0166380:CDS 35.0%
! TTTGGTTTCTTTGGGAATGT+CGG - chr1_4:47682263-47682282 Msa0166380:intron 35.0%
! TCCAAAAGTACAATCTCAAC+TGG - chr1_4:47682410-47682429 Msa0166380:intron 35.0%
! ACCAGTTGAGATTGTACTTT+TGG + chr1_4:47682414-47682433 None:intergenic 35.0%
TGCTTGATAAATCTTGTGAG+TGG - chr1_4:47682634-47682653 Msa0166380:intron 35.0%
TGAGTGGAGAATCAAATTTG+TGG - chr1_4:47682650-47682669 Msa0166380:intron 35.0%
TGGTGACATTAGATTGTGTT+TGG - chr1_4:47682670-47682689 Msa0166380:intron 35.0%
TAGATTGTGTTTGGAAAGCT+AGG - chr1_4:47682679-47682698 Msa0166380:intron 35.0%
TGGGTGAAATTGAATTGTGA+TGG - chr1_4:47682870-47682889 Msa0166380:intron 35.0%
AAGAAGTTCAGCTGTGATAA+TGG + chr1_4:47682999-47683018 None:intergenic 35.0%
CTACAGAGAAGCAAATAAAG+TGG - chr1_4:47683204-47683223 Msa0166380:intron 35.0%
TGGCATGTTATCTCTTTGAT+TGG - chr1_4:47683327-47683346 Msa0166380:intron 35.0%
!!! GGTTGTTGTTTGTTTTTTGG+GGG - chr1_4:47683348-47683367 Msa0166380:intron 35.0%
! ATGGATTTTGCAAGAGAAGA+CGG - chr1_4:47683398-47683417 Msa0166380:intron 35.0%
AGAGTTCAGATGATAAGTGT+TGG + chr1_4:47683427-47683446 None:intergenic 35.0%
TTGGCATATAATGCACATCA+AGG - chr1_4:47683473-47683492 Msa0166380:intron 35.0%
TGGCATATAATGCACATCAA+GGG - chr1_4:47683474-47683493 Msa0166380:intron 35.0%
GAAAATATGAGAAGTCCGAA+AGG + chr1_4:47683686-47683705 None:intergenic 35.0%
GAGGACAAAAGGTAAATGAA+AGG + chr1_4:47683708-47683727 None:intergenic 35.0%
GAAAATATGAGGAGGACAAA+AGG + chr1_4:47683719-47683738 None:intergenic 35.0%
AGTGAAAGGAAAATATGAGG+AGG + chr1_4:47683727-47683746 None:intergenic 35.0%
TGTGACCTAAAAATAGTGAG+TGG + chr1_4:47683840-47683859 None:intergenic 35.0%
! GGTATGATGATGCTCTAATT+TGG - chr1_4:47684099-47684118 Msa0166380:intron 35.0%
TTCAACAGTTTCACCAACAA+TGG - chr1_4:47684395-47684414 Msa0166380:CDS 35.0%
AGAAACAGATACACCATTGT+TGG + chr1_4:47684411-47684430 None:intergenic 35.0%
! ACAATGGTGTATCTGTTTCT+TGG - chr1_4:47684411-47684430 Msa0166380:CDS 35.0%
AAGTTACCAAGGTTTATGGT+TGG - chr1_4:47684450-47684469 Msa0166380:CDS 35.0%
TTTGTACACTCTCTTCAGAT+TGG - chr1_4:47684657-47684676 Msa0166380:intron 35.0%
AACTAAAGTGGAAAATAGGG+AGG + chr1_4:47684939-47684958 None:intergenic 35.0%
TTAGTATGATTGGGTCATGT+AGG + chr1_4:47685052-47685071 None:intergenic 35.0%
ATACGCTAATTACTCCAAAC+TGG + chr1_4:47685207-47685226 None:intergenic 35.0%
! TAGTACTGAAGTTCAAACTC+AGG + chr1_4:47685413-47685432 None:intergenic 35.0%
TGAAGAGACAACAAATGTGA+AGG + chr1_4:47685601-47685620 None:intergenic 35.0%
CAATAGTCAACACATTCCTT+TGG + chr1_4:47685726-47685745 None:intergenic 35.0%
! TGCACAACCAAAAGTATAGA+GGG + chr1_4:47686011-47686030 None:intergenic 35.0%
! TTGCACAACCAAAAGTATAG+AGG + chr1_4:47686012-47686031 None:intergenic 35.0%
!! AAGAAGCAAGTATTGATGAC+AGG + chr1_4:47686244-47686263 None:intergenic 35.0%
AAGTAATTGATATTGGCGAC+TGG - chr1_4:47686334-47686353 Msa0166380:intron 35.0%
ATTCCTTCACTAAGGATGAA+GGG - chr1_4:47686358-47686377 Msa0166380:intron 35.0%
GAAAAGATATGGGAACATTC+TGG + chr1_4:47686471-47686490 None:intergenic 35.0%
! GTTCCCATATCTTTTCAACA+TGG - chr1_4:47686475-47686494 Msa0166380:five_prime_UTR 35.0%
AAGGAAGGAAAATACTGATG+TGG - chr1_4:47686635-47686654 Msa0166380:intron 35.0%
AGGAAGGAAAATACTGATGT+GGG - chr1_4:47686636-47686655 Msa0166380:intron 35.0%
ACTTACATTTGAGCATCCAT+AGG - chr1_4:47686799-47686818 Msa0166380:intron 35.0%
CAAATGCATTCTTACTCTGT+TGG - chr1_4:47687058-47687077 Msa0166380:intron 35.0%
!! TCTTTCAAGTATTGATCTGG+AGG - chr1_4:47687133-47687152 Msa0166380:intron 35.0%
TTCATCATCAAAACCATTGG+TGG - chr1_4:47687266-47687285 Msa0166380:intron 35.0%
TCATCATCAAAACCATTGGT+GGG - chr1_4:47687267-47687286 Msa0166380:intron 35.0%
CATAGTCTCATAGGTAATGT+AGG - chr1_4:47687455-47687474 Msa0166380:intron 35.0%
! GGTAATGTAGGTTTTTGTTC+TGG - chr1_4:47687467-47687486 Msa0166380:intron 35.0%
! AATGTAGGTTTTTGTTCTGG+TGG - chr1_4:47687470-47687489 Msa0166380:intron 35.0%
! ATGTAGGTTTTTGTTCTGGT+GGG - chr1_4:47687471-47687490 Msa0166380:intron 35.0%
TTATCGTCTCTTCATCACAA+TGG + chr1_4:47687996-47688015 None:intergenic 35.0%
AGACGATAAATTGCTAGCTA+GGG - chr1_4:47688007-47688026 Msa0166380:intron 35.0%
! TTTTCACACTGCAATGAACA+AGG + chr1_4:47688280-47688299 None:intergenic 35.0%
TTGTTCATTGCAGTGTGAAA+AGG - chr1_4:47688279-47688298 Msa0166380:intron 35.0%
GTGTGAAAAGGAATATCATG+TGG - chr1_4:47688291-47688310 Msa0166380:intron 35.0%
CTGTTTGAGGGATCATAAAA+TGG - chr1_4:47688315-47688334 Msa0166380:intron 35.0%
TCATATATTGCAGGAATTGC+CGG - chr1_4:47688369-47688388 Msa0166380:intron 35.0%
! AAAGCAAGAGGGTATATGTT+TGG - chr1_4:47688504-47688523 Msa0166380:intron 35.0%
AGAAGAAATATAAGGACAGG+CGG + chr1_4:47688638-47688657 None:intergenic 35.0%
GATCATAACTATATGTAGGG+TGG - chr1_4:47688668-47688687 Msa0166380:intron 35.0%
!!! CATTTTTTGAGGGACAAACA+AGG + chr1_4:47688708-47688727 None:intergenic 35.0%
CTTGTTTGTCCCTCAAAAAA+TGG - chr1_4:47688706-47688725 Msa0166380:intron 35.0%
!!! GCATCTCTACCATTTTTTGA+GGG + chr1_4:47688718-47688737 None:intergenic 35.0%
!!! AGCATCTCTACCATTTTTTG+AGG + chr1_4:47688719-47688738 None:intergenic 35.0%
CAAAAAATGGTAGAGATGCT+TGG - chr1_4:47688719-47688738 Msa0166380:intron 35.0%
TTGAAAAGAACACCATGTAG+AGG + chr1_4:47688972-47688991 None:intergenic 35.0%
ACTAGTAAATGCAACTCCTT+TGG - chr1_4:47689014-47689033 Msa0166380:intron 35.0%
!! TTGATAAGGGAAGGTATCAA+AGG + chr1_4:47689126-47689145 None:intergenic 35.0%
ATACTGCAATTGATAAGGGA+AGG + chr1_4:47689135-47689154 None:intergenic 35.0%
TGATACAAATGTGAAGTTGC+GGG + chr1_4:47689170-47689189 None:intergenic 35.0%
TCCCAACAGAAATACATTAC+TGG + chr1_4:47689244-47689263 None:intergenic 35.0%
TGCAAATTCCTTTCTTAGAG+TGG - chr1_4:47689266-47689285 Msa0166380:intron 35.0%
GCAAATTCCTTTCTTAGAGT+GGG - chr1_4:47689267-47689286 Msa0166380:intron 35.0%
!! GACCCAGGGAAATTATTTTA+TGG + chr1_4:47689305-47689324 None:intergenic 35.0%
! GAATTTAAGATCAAGACCCA+GGG + chr1_4:47689319-47689338 None:intergenic 35.0%
GGTCTTGATCTTAAATTCCT+TGG - chr1_4:47689321-47689340 Msa0166380:intron 35.0%
ATCAAACACTCTGAATCATG+GGG + chr1_4:47689433-47689452 None:intergenic 35.0%
CTATCAAACACTCTGAATCA+TGG + chr1_4:47689435-47689454 None:intergenic 35.0%
ACACAAGTTATGGTAGGTTT+GGG + chr1_4:47689490-47689509 None:intergenic 35.0%
TCTTGTGGAAAACTCAGAAA+GGG + chr1_4:47689736-47689755 None:intergenic 35.0%
ATCTTGTGGAAAACTCAGAA+AGG + chr1_4:47689737-47689756 None:intergenic 35.0%
GTTCAACAATAGTGATCTTG+TGG + chr1_4:47689751-47689770 None:intergenic 35.0%
CATAAACCATGGAAGGAATA+AGG + chr1_4:47689832-47689851 None:intergenic 35.0%
CTTATTCCTTCCATGGTTTA+TGG - chr1_4:47689830-47689849 Msa0166380:five_prime_UTR 35.0%
GCTTGTCATTCAAATACAGA+CGG - chr1_4:47689927-47689946 Msa0166380:five_prime_UTR 35.0%
! AATTTGCAGACTCAGGATTT+TGG - chr1_4:47689950-47689969 Msa0166380:five_prime_UTR 35.0%
!!! AACTTGATTGGCCTTTTCAT+TGG - chr1_4:47690212-47690231 Msa0166380:five_prime_UTR 35.0%
!!! ACTTGATTGGCCTTTTCATT+GGG - chr1_4:47690213-47690232 Msa0166380:five_prime_UTR 35.0%
TTTAATAAGGGAAAGTGGCT+GGG + chr1_4:47690257-47690276 None:intergenic 35.0%
! TTTTAATAAGGGAAAGTGGC+TGG + chr1_4:47690258-47690277 None:intergenic 35.0%
ATGGGAATATAAAGTGGTCA+TGG - chr1_4:47690295-47690314 Msa0166380:five_prime_UTR 35.0%
AAGGTTCTTCACATTCAAGA+AGG + chr1_4:47690737-47690756 None:intergenic 35.0%
!! CTACTTACATTTTAGGAGCT+AGG - chr1_4:47690848-47690867 Msa0166380:intron 35.0%
!! TTGGCAGTTCTTTCTAAAGT+TGG + chr1_4:47691035-47691054 None:intergenic 35.0%
!! AACAGTTGATGGCATTCAAA+GGG - chr1_4:47691053-47691072 Msa0166380:intron 35.0%
GACAGTTATGCTTCACAAAT+CGG - chr1_4:47691075-47691094 Msa0166380:intron 35.0%
TAAAAAGGTCACTCAAAAGG+GGG - chr1_4:47691143-47691162 Msa0166380:intron 35.0%
TGTCATGATAGCTTCACAAT+TGG + chr1_4:47691224-47691243 None:intergenic 35.0%
!! TTTTTAGTGATGAGGATCGG+AGG + chr1_4:47681696-47681715 None:intergenic 40.0%
!!! CGGTTTTTAGTGATGAGGAT+CGG + chr1_4:47681699-47681718 None:intergenic 40.0%
ATCCTCATCACTAAAAACCG+TGG - chr1_4:47681699-47681718 Msa0166380:three_prime_UTR 40.0%
TCCTCATCACTAAAAACCGT+GGG - chr1_4:47681700-47681719 Msa0166380:three_prime_UTR 40.0%
CTAAAAACCGTGGGATTGAT+TGG - chr1_4:47681709-47681728 Msa0166380:three_prime_UTR 40.0%
TGCTTAATTTCAGGCAGCAA+AGG - chr1_4:47682361-47682380 Msa0166380:intron 40.0%
GTCACGAAAAATGTGCAAAG+AGG + chr1_4:47682517-47682536 None:intergenic 40.0%
TCCAAGGTAACATTGTTGAG+TGG - chr1_4:47682598-47682617 Msa0166380:intron 40.0%
TCCACTCAACAATGTTACCT+TGG + chr1_4:47682602-47682621 None:intergenic 40.0%
ATGTCGCAGAACTCATGAAT+TGG - chr1_4:47682758-47682777 Msa0166380:intron 40.0%
TCATTCTCCTCCAAATACTG+AGG - chr1_4:47682806-47682825 Msa0166380:CDS 40.0%
GATTCCATGACCTCAGTATT+TGG + chr1_4:47682819-47682838 None:intergenic 40.0%
TCATGGAATCCGAGATTTCT+TGG - chr1_4:47682829-47682848 Msa0166380:CDS 40.0%
CATGGAATCCGAGATTTCTT+GGG - chr1_4:47682830-47682849 Msa0166380:CDS 40.0%
! TTATCTCAGCATTTTCGGTG+AGG - chr1_4:47682960-47682979 Msa0166380:CDS 40.0%
TGGCAGATGCTTTAGCTAAA+TGG - chr1_4:47683224-47683243 Msa0166380:intron 40.0%
GGCAGATGCTTTAGCTAAAT+GGG - chr1_4:47683225-47683244 Msa0166380:intron 40.0%
GCAGATGCTTTAGCTAAATG+GGG - chr1_4:47683226-47683245 Msa0166380:intron 40.0%
CAGATGCTTTAGCTAAATGG+GGG - chr1_4:47683227-47683246 Msa0166380:intron 40.0%
CCTGAATATCCATACAGTTC+AGG + chr1_4:47683574-47683593 None:intergenic 40.0%
CCTGAACTGTATGGATATTC+AGG - chr1_4:47683571-47683590 Msa0166380:intron 40.0%
CAAAATGCACAATTCACCGT+TGG + chr1_4:47684340-47684359 None:intergenic 40.0%
TTACCAAGGTTTATGGTTGG+TGG - chr1_4:47684453-47684472 Msa0166380:CDS 40.0%
AACTACACTACCTGAGCTAA+GGG - chr1_4:47684501-47684520 Msa0166380:intron 40.0%
GAAATTCTTACCCTTAGCTC+AGG + chr1_4:47684514-47684533 None:intergenic 40.0%
AAACTCTGTGTGTGTTTGTG+TGG + chr1_4:47684635-47684654 None:intergenic 40.0%
GTCTATGAGTATGATTGGGT+TGG + chr1_4:47685160-47685179 None:intergenic 40.0%
!! CATTTTAGGAAGCCTGATCT+TGG - chr1_4:47685236-47685255 Msa0166380:intron 40.0%
! GCGAAATTTTCATGCAAAGC+TGG + chr1_4:47685337-47685356 None:intergenic 40.0%
GAAGAGGTTAAGTAGTGTGA+TGG - chr1_4:47685551-47685570 Msa0166380:intron 40.0%
ACTATATTATGCAGGGAGAG+AGG - chr1_4:47685677-47685696 Msa0166380:intron 40.0%
AAAACACCTGAGAACTCCAA+AGG - chr1_4:47685707-47685726 Msa0166380:intron 40.0%
CTCTCATAATCTCAACGTGT+TGG + chr1_4:47685751-47685770 None:intergenic 40.0%
CAACACGTTGAGATTATGAG+AGG - chr1_4:47685749-47685768 Msa0166380:intron 40.0%
!! TATTGATGACAGGCTTTGGA+AGG + chr1_4:47686234-47686253 None:intergenic 40.0%
!! CAAGTATTGATGACAGGCTT+TGG + chr1_4:47686238-47686257 None:intergenic 40.0%
CATTCCTTCACTAAGGATGA+AGG - chr1_4:47686357-47686376 Msa0166380:intron 40.0%
TTCCTTCACTAAGGATGAAG+GGG - chr1_4:47686359-47686378 Msa0166380:intron 40.0%
GGAAGGAAAATACTGATGTG+GGG - chr1_4:47686637-47686656 Msa0166380:intron 40.0%
! AATCGCATAGGCAGCTTTTA+AGG + chr1_4:47686699-47686718 None:intergenic 40.0%
TGCCTATGCGATTATTCTTG+TGG - chr1_4:47686706-47686725 Msa0166380:intron 40.0%
GCCTATGCGATTATTCTTGT+GGG - chr1_4:47686707-47686726 Msa0166380:intron 40.0%
TGGATTTGAATGTGTCTCAG+AGG - chr1_4:47686731-47686750 Msa0166380:intron 40.0%
GCATTTGTAATTGCCCGTTA+GGG + chr1_4:47687045-47687064 None:intergenic 40.0%
TGCATTTGTAATTGCCCGTT+AGG + chr1_4:47687046-47687065 None:intergenic 40.0%
TGCATTCTTACTCTGTTGGT+TGG - chr1_4:47687062-47687081 Msa0166380:intron 40.0%
TTATGATGCAGAGATGTCAG+TGG - chr1_4:47687086-47687105 Msa0166380:intron 40.0%
!! ATCAAAACCATTGGTGGGTT+TGG - chr1_4:47687272-47687291 Msa0166380:intron 40.0%
TACTACTTGAGGGAAGAGAA+AGG - chr1_4:47687377-47687396 Msa0166380:intron 40.0%
ACTACTTGAGGGAAGAGAAA+GGG - chr1_4:47687378-47687397 Msa0166380:intron 40.0%
ATGAGACTATGCACACTTCA+AGG + chr1_4:47687446-47687465 None:intergenic 40.0%
TGAAGTGTGCATAGTCTCAT+AGG - chr1_4:47687446-47687465 Msa0166380:intron 40.0%
TGTCACGGAAATGACATGAA+TGG - chr1_4:47687621-47687640 Msa0166380:intron 40.0%
ATGTCTGTAGCTACTGTTCA+TGG + chr1_4:47687698-47687717 None:intergenic 40.0%
GAGACGATAAATTGCTAGCT+AGG - chr1_4:47688006-47688025 Msa0166380:intron 40.0%
AGCTAGGGATGATGCATTTA+TGG - chr1_4:47688022-47688041 Msa0166380:intron 40.0%
! AATATCATGTGGGCTGTTTG+AGG - chr1_4:47688302-47688321 Msa0166380:intron 40.0%
! ATATCATGTGGGCTGTTTGA+GGG - chr1_4:47688303-47688322 Msa0166380:intron 40.0%
! GAAACTCCCTGAATCTCTTT+TGG - chr1_4:47688468-47688487 Msa0166380:intron 40.0%
ACTTGGAAGAGTTAAAAGCG+TGG + chr1_4:47688836-47688855 None:intergenic 40.0%
GTAGAGGAATTCTGTTCGAA+CGG + chr1_4:47688956-47688975 None:intergenic 40.0%
TCGAACAGAATTCCTCTACA+TGG - chr1_4:47688957-47688976 Msa0166380:intron 40.0%
GTAAATGCAACTCCTTTGGT+AGG - chr1_4:47689018-47689037 Msa0166380:intron 40.0%
!! GGAAGGTATCAAAGGTTAGT+CGG + chr1_4:47689118-47689137 None:intergenic 40.0%
GTATCAATTGTTGCACTTGC+AGG - chr1_4:47689184-47689203 Msa0166380:intron 40.0%
! GGAATTTAAGATCAAGACCC+AGG + chr1_4:47689320-47689339 None:intergenic 40.0%
GTGGATGACATTATAGTGAC+AGG + chr1_4:47689388-47689407 None:intergenic 40.0%
! AGCAGTGTTATTGGTGTATG+TGG + chr1_4:47689407-47689426 None:intergenic 40.0%
TTGGGGTTCAAACAAAGTCA+AGG + chr1_4:47689472-47689491 None:intergenic 40.0%
CACAAGTTATGGTAGGTTTG+GGG + chr1_4:47689489-47689508 None:intergenic 40.0%
CACACAAGTTATGGTAGGTT+TGG + chr1_4:47689491-47689510 None:intergenic 40.0%
TATGACAATCATCGTGAGAG+TGG + chr1_4:47689525-47689544 None:intergenic 40.0%
! CAGTTTGTTCACCATATCCA+GGG - chr1_4:47689580-47689599 Msa0166380:five_prime_UTR 40.0%
! AGTTTGTTCACCATATCCAG+GGG - chr1_4:47689581-47689600 Msa0166380:five_prime_UTR 40.0%
TCTTACCCATAAACCATGGA+AGG + chr1_4:47689839-47689858 None:intergenic 40.0%
ATGACAAGCCAGTTGAAACA+AGG + chr1_4:47689916-47689935 None:intergenic 40.0%
GATACCACAGATGAACTTCA+AGG + chr1_4:47690089-47690108 None:intergenic 40.0%
AAGTTCATCTGTGGTATCTG+CGG - chr1_4:47690091-47690110 Msa0166380:five_prime_UTR 40.0%
GACTGTACTGCTAACTTGAT+TGG - chr1_4:47690200-47690219 Msa0166380:five_prime_UTR 40.0%
!! GACATTGGTTCCCAATGAAA+AGG + chr1_4:47690226-47690245 None:intergenic 40.0%
TTAATAAGGGAAAGTGGCTG+GGG + chr1_4:47690256-47690275 None:intergenic 40.0%
ACCGCTATTTAGCCACAAAA+TGG - chr1_4:47690393-47690412 Msa0166380:five_prime_UTR 40.0%
! CCCATTTTGTGGCTAAATAG+CGG + chr1_4:47690397-47690416 None:intergenic 40.0%
CCGCTATTTAGCCACAAAAT+GGG - chr1_4:47690394-47690413 Msa0166380:five_prime_UTR 40.0%
! CGTCAAAACAACCCATTTTG+TGG + chr1_4:47690408-47690427 None:intergenic 40.0%
!!! TTGTTTTGACGAGTTCCCTT+AGG - chr1_4:47690417-47690436 Msa0166380:five_prime_UTR 40.0%
! TTTGCTCTTGGCGATGTTTT+TGG - chr1_4:47690540-47690559 Msa0166380:five_prime_UTR 40.0%
CAATGCACGAGAACAATGTT+TGG + chr1_4:47690702-47690721 None:intergenic 40.0%
CATTGTTCTCGTGCATTGAA+AGG - chr1_4:47690704-47690723 Msa0166380:intron 40.0%
CTGAAGAAGCAGAATCCATA+TGG - chr1_4:47690770-47690789 Msa0166380:intron 40.0%
! TTTAGGGTAGGGAATACGAA+TGG + chr1_4:47690981-47691000 None:intergenic 40.0%
!!! TACTCGGTCATTTTAGGGTA+GGG + chr1_4:47690992-47691011 None:intergenic 40.0%
AAAGAACTGCCAACAGTTGA+TGG - chr1_4:47691042-47691061 Msa0166380:intron 40.0%
CTTTGAATGCCATCAACTGT+TGG + chr1_4:47691054-47691073 None:intergenic 40.0%
!! CAACAGTTGATGGCATTCAA+AGG - chr1_4:47691052-47691071 Msa0166380:intron 40.0%
!! AATAACACGACGGTATCGGT+CGG + chr1_4:47681653-47681672 None:intergenic 45.0%
!!! TCCCACGGTTTTTAGTGATG+AGG + chr1_4:47681704-47681723 None:intergenic 45.0%
ATACCCACGGAGAAGAATTC+CGG + chr1_4:47681775-47681794 None:intergenic 45.0%
ACTTCTTTGATTGGCACTCG+AGG + chr1_4:47682449-47682468 None:intergenic 45.0%
AAACTTTGGCAGGAGCTGTT+GGG - chr1_4:47682552-47682571 Msa0166380:intron 45.0%
TCGCAGAACTCATGAATTGG+TGG - chr1_4:47682761-47682780 Msa0166380:intron 45.0%
TCCTCCAAATACTGAGGTCA+TGG - chr1_4:47682812-47682831 Msa0166380:CDS 45.0%
TCCATGACCTCAGTATTTGG+AGG + chr1_4:47682816-47682835 None:intergenic 45.0%
GGTCTGCCCACCTTTAAATT+GGG - chr1_4:47682851-47682870 Msa0166380:intron 45.0%
!! TGTGATGGTGCTGTGAATCA+AGG - chr1_4:47682885-47682904 Msa0166380:intron 45.0%
!! ATGGTGCTGTGAATCAAGGT+GGG - chr1_4:47682889-47682908 Msa0166380:intron 45.0%
GGGTTAAGTGCAAGTTATGC+TGG - chr1_4:47682909-47682928 Msa0166380:intron 45.0%
! TCAGCATTTTCGGTGAGGTT+GGG - chr1_4:47682965-47682984 Msa0166380:CDS 45.0%
CGGAAGCAGTTGATTATCTC+AGG - chr1_4:47683089-47683108 Msa0166380:intron 45.0%
! GTTTTGCTAGCTGATAGAGC+TGG - chr1_4:47683307-47683326 Msa0166380:intron 45.0%
TGCTCACTGCCTTCAGTAAT+TGG - chr1_4:47683506-47683525 Msa0166380:intron 45.0%
CAACTACACTACCTGAGCTA+AGG - chr1_4:47684500-47684519 Msa0166380:intron 45.0%
!! CACATTCCTTTGGAGTTCTC+AGG + chr1_4:47685716-47685735 None:intergenic 45.0%
TGAGAGGAGTAAGATCTGAC+AGG - chr1_4:47685765-47685784 Msa0166380:intron 45.0%
ATCCCCTTCATCCTTAGTGA+AGG + chr1_4:47686364-47686383 None:intergenic 45.0%
ACTAAGGATGAAGGGGATGA+AGG - chr1_4:47686366-47686385 Msa0166380:intron 45.0%
CTAAGGATGAAGGGGATGAA+GGG - chr1_4:47686367-47686386 Msa0166380:intron 45.0%
TAAGGATGAAGGGGATGAAG+GGG - chr1_4:47686368-47686387 Msa0166380:intron 45.0%
GCCCACAAGAATAATCGCAT+AGG + chr1_4:47686711-47686730 None:intergenic 45.0%
ATGCGATTATTCTTGTGGGC+TGG - chr1_4:47686711-47686730 Msa0166380:intron 45.0%
ACAGCACAAGAACGAACCTA+TGG + chr1_4:47686818-47686837 None:intergenic 45.0%
! GTATTGATCTGCAGGACTTC+TGG - chr1_4:47687183-47687202 Msa0166380:five_prime_UTR 45.0%
! GTTTTCTCCAAACCCACCAA+TGG + chr1_4:47687282-47687301 None:intergenic 45.0%
TGCTGCAAAATGTGATGGCA+AGG - chr1_4:47687335-47687354 Msa0166380:intron 45.0%
CAAAATGTGATGGCAAGGCA+AGG - chr1_4:47687340-47687359 Msa0166380:intron 45.0%
TTCAAGGCTCTTTCTCTCCA+TGG + chr1_4:47687430-47687449 None:intergenic 45.0%
! AGTTTCTAGACCTGCAAGCA+TGG - chr1_4:47687582-47687601 Msa0166380:intron 45.0%
! GTTTCTAGACCTGCAAGCAT+GGG - chr1_4:47687583-47687602 Msa0166380:intron 45.0%
CACTGTTCACAGTTGCTAGA+AGG + chr1_4:47687760-47687779 None:intergenic 45.0%
AATGAACAAGGAGGGGAAGA+GGG + chr1_4:47688268-47688287 None:intergenic 45.0%
ACACTGCAATGAACAAGGAG+GGG + chr1_4:47688275-47688294 None:intergenic 45.0%
CACACTGCAATGAACAAGGA+GGG + chr1_4:47688276-47688295 None:intergenic 45.0%
TCACACTGCAATGAACAAGG+AGG + chr1_4:47688277-47688296 None:intergenic 45.0%
ATATTGCAGGAATTGCCGGA+AGG - chr1_4:47688373-47688392 Msa0166380:intron 45.0%
TATTGCAGGAATTGCCGGAA+GGG - chr1_4:47688374-47688393 Msa0166380:intron 45.0%
!! TTTTGGAGAACCTCCTAGCT+AGG - chr1_4:47688437-47688456 Msa0166380:intron 45.0%
TTTGGAGAACCTCCTAGCTA+GGG - chr1_4:47688438-47688457 Msa0166380:intron 45.0%
AAGTTGCTTCTCCTGAAACC+AGG - chr1_4:47688572-47688591 Msa0166380:intron 45.0%
TAGCTGGGAATCTTGTGACT+TGG + chr1_4:47688853-47688872 None:intergenic 45.0%
AAGTCACAAGATTCCCAGCT+AGG - chr1_4:47688852-47688871 Msa0166380:intron 45.0%
GATATTGCACCTTCCTAGCT+GGG + chr1_4:47688868-47688887 None:intergenic 45.0%
TGATATTGCACCTTCCTAGC+TGG + chr1_4:47688869-47688888 None:intergenic 45.0%
! TTCGAACGGAATGGAAGTGT+GGG + chr1_4:47688942-47688961 None:intergenic 45.0%
GGAATTCTGTTCGAACGGAA+TGG + chr1_4:47688951-47688970 None:intergenic 45.0%
! GCTGACTTAGCGTACTACAA+AGG - chr1_4:47689052-47689071 Msa0166380:intron 45.0%
CGTACTACAAAGGCAACATC+AGG - chr1_4:47689062-47689081 Msa0166380:intron 45.0%
! AGTGACAGGTGATGATGAAG+AGG + chr1_4:47689374-47689393 None:intergenic 45.0%
ATGGGGAGTAGCAGTGTTAT+TGG + chr1_4:47689416-47689435 None:intergenic 45.0%
CAATCATCGTGAGAGTGGTT+TGG + chr1_4:47689520-47689539 None:intergenic 45.0%
! GCAGTTTGTTCACCATATCC+AGG - chr1_4:47689579-47689598 Msa0166380:five_prime_UTR 45.0%
TCAGTAGCTGCGTCAACTAT+AGG + chr1_4:47689803-47689822 None:intergenic 45.0%
ACGTGACCTTATTCCTTCCA+TGG - chr1_4:47689823-47689842 Msa0166380:five_prime_UTR 45.0%
! TTGCAGACTCAGGATTTTGG+AGG - chr1_4:47689953-47689972 Msa0166380:five_prime_UTR 45.0%
AGTTCATCTGTGGTATCTGC+GGG - chr1_4:47690092-47690111 Msa0166380:five_prime_UTR 45.0%
AAGACACAAGAACCGTGGAA+AGG - chr1_4:47690166-47690185 Msa0166380:five_prime_UTR 45.0%
AAGTTAGCAGTACAGTCCTC+AGG + chr1_4:47690197-47690216 None:intergenic 45.0%
TAATAAGGGAAAGTGGCTGG+GGG + chr1_4:47690255-47690274 None:intergenic 45.0%
TAAAGTGGTCATGGTAAGGC+TGG - chr1_4:47690304-47690323 Msa0166380:five_prime_UTR 45.0%
AAAGTGGTCATGGTAAGGCT+GGG - chr1_4:47690305-47690324 Msa0166380:five_prime_UTR 45.0%
CATCGCTAAACACGTCCTAA+GGG + chr1_4:47690435-47690454 None:intergenic 45.0%
TCATCGCTAAACACGTCCTA+AGG + chr1_4:47690436-47690455 None:intergenic 45.0%
TGATCACTTATGCCTGTGTC+TGG - chr1_4:47690628-47690647 Msa0166380:intron 45.0%
GATCACTTATGCCTGTGTCT+GGG - chr1_4:47690629-47690648 Msa0166380:intron 45.0%
!!! GTACTCGGTCATTTTAGGGT+AGG + chr1_4:47690993-47691012 None:intergenic 45.0%
!! CGGTGTACTCGGTCATTTTA+GGG + chr1_4:47690997-47691016 None:intergenic 45.0%
!! ACGGTGTACTCGGTCATTTT+AGG + chr1_4:47690998-47691017 None:intergenic 45.0%
CTATGAATGATCCGACATCG+AGG + chr1_4:47691103-47691122 None:intergenic 45.0%
GAGATGTAGGAAGAGCTTAC+TGG - chr1_4:47691347-47691366 Msa0166380:five_prime_UTR 45.0%
!! ATAATATAGTAAAAAAAAAA+AGG + chr1_4:47685667-47685686 None:intergenic 5.0%
ATGAAGGATCGGCTAGGGTT+TGG + chr1_4:47681625-47681644 None:intergenic 50.0%
AAACCCTAGCCGATCCTTCA+TGG - chr1_4:47681624-47681643 Msa0166380:three_prime_UTR 50.0%
CTTTGATTGGCACTCGAGGA+AGG + chr1_4:47682445-47682464 None:intergenic 50.0%
GAAACTTTGGCAGGAGCTGT+TGG - chr1_4:47682551-47682570 Msa0166380:intron 50.0%
TGGGCAGACCCAAGAAATCT+CGG + chr1_4:47682841-47682860 None:intergenic 50.0%
GGGTCTGCCCACCTTTAAAT+TGG - chr1_4:47682850-47682869 Msa0166380:intron 50.0%
!! GATGGTGCTGTGAATCAAGG+TGG - chr1_4:47682888-47682907 Msa0166380:intron 50.0%
! CTCAGCATTTTCGGTGAGGT+TGG - chr1_4:47682964-47682983 Msa0166380:CDS 50.0%
GCAGTTGATTATCTCAGGCG+TGG - chr1_4:47683094-47683113 Msa0166380:intron 50.0%
CTGCCACCAACCATAAACCT+TGG + chr1_4:47684459-47684478 None:intergenic 50.0%
GTGTTCGTCGTGTTCCAGTT+TGG - chr1_4:47685190-47685209 Msa0166380:intron 50.0%
CGACTGGCATTCCTTCACTA+AGG - chr1_4:47686350-47686369 Msa0166380:intron 50.0%
TTTCTCTCTCTCACGCTCCA+AGG + chr1_4:47687404-47687423 None:intergenic 50.0%
TTGGAGCGTGAGAGAGAGAA+AGG - chr1_4:47687403-47687422 Msa0166380:intron 50.0%
TGGAGCGTGAGAGAGAGAAA+GGG - chr1_4:47687404-47687423 Msa0166380:intron 50.0%
TAGACCTGCAAGCATGGGAA+AGG - chr1_4:47687588-47687607 Msa0166380:intron 50.0%
TTGTCCTTTCCCATGCTTGC+AGG + chr1_4:47687595-47687614 None:intergenic 50.0%
CAATGAACAAGGAGGGGAAG+AGG + chr1_4:47688269-47688288 None:intergenic 50.0%
ATTGCAGGAATTGCCGGAAG+GGG - chr1_4:47688375-47688394 Msa0166380:intron 50.0%
AAAAGCAACGGCCTGGTTTC+AGG + chr1_4:47688586-47688605 None:intergenic 50.0%
!! TGAAACCAGGCCGTTGCTTT+TGG - chr1_4:47688585-47688604 Msa0166380:intron 50.0%
CACAAGATTCCCAGCTAGGA+AGG - chr1_4:47688856-47688875 Msa0166380:intron 50.0%
GCTGACTATAGGGTCAACTG+TGG + chr1_4:47688900-47688919 None:intergenic 50.0%
GTTCGAACGGAATGGAAGTG+TGG + chr1_4:47688943-47688962 None:intergenic 50.0%
! GAAGTGGCCCACTCTAAGAA+AGG + chr1_4:47689277-47689296 None:intergenic 50.0%
GAAGAGGAGCAACAACTGCT+GGG + chr1_4:47689358-47689377 None:intergenic 50.0%
TGAAGAGGAGCAACAACTGC+TGG + chr1_4:47689359-47689378 None:intergenic 50.0%
CATGCTTTGTCCCCTGGATA+TGG + chr1_4:47689594-47689613 None:intergenic 50.0%
CAGACGGAATTTGCAGACTC+AGG - chr1_4:47689943-47689962 Msa0166380:five_prime_UTR 50.0%
!! CTGGCCTTGAAGTTCATCTG+TGG - chr1_4:47690082-47690101 Msa0166380:five_prime_UTR 50.0%
GCTACAAGACACAAGAACCG+TGG - chr1_4:47690161-47690180 Msa0166380:five_prime_UTR 50.0%
ACAAGAACCGTGGAAAGGTG+AGG - chr1_4:47690171-47690190 Msa0166380:five_prime_UTR 50.0%
AGAGTTCACTACCCAGACAC+AGG + chr1_4:47690643-47690662 None:intergenic 50.0%
GTTTGGAAGTAGCCCTGTTC+AGG + chr1_4:47690685-47690704 None:intergenic 50.0%
GTTCTCGTGCATTGAAAGGC+TGG - chr1_4:47690708-47690727 Msa0166380:intron 50.0%
CTTCAGCAGCTGGTAACACA+AGG + chr1_4:47690756-47690775 None:intergenic 50.0%
GATTCTGCTTCTTCAGCAGC+TGG + chr1_4:47690766-47690785 None:intergenic 50.0%
! GTTGGTAAGCTGCAGCACAA+CGG + chr1_4:47691017-47691036 None:intergenic 50.0%
! ACAAATCGGTGCCTCGATGT+CGG - chr1_4:47691089-47691108 Msa0166380:intron 50.0%
AAGGATCGGCTAGGGTTTGG+AGG + chr1_4:47681622-47681641 None:intergenic 55.0%
AGGCCATGAAGGATCGGCTA+GGG + chr1_4:47681630-47681649 None:intergenic 55.0%
CACGGAGAAGAATTCCGGTG+CGG + chr1_4:47681770-47681789 None:intergenic 55.0%
GCACCGGAATTCTTCTCCGT+GGG - chr1_4:47681769-47681788 Msa0166380:exon 55.0%
! GCATTTTCGGTGAGGTTGGG+AGG - chr1_4:47682968-47682987 Msa0166380:CDS 55.0%
TGAGGGAAGAGAAAGGGCCT+TGG - chr1_4:47687384-47687403 Msa0166380:intron 55.0%
GTGAGAGAGAGAAAGGGCCA+TGG - chr1_4:47687410-47687429 Msa0166380:intron 55.0%
CAAGGAGGGGAAGAGGGTTA+AGG + chr1_4:47688262-47688281 None:intergenic 55.0%
CAACAAAGCCAGTCCCCTTC+CGG + chr1_4:47688391-47688410 None:intergenic 55.0%
GTTTCTCAGCCTCCCTAGCT+AGG + chr1_4:47688453-47688472 None:intergenic 55.0%
!!! AACCAGGCCGTTGCTTTTGG+AGG - chr1_4:47688588-47688607 Msa0166380:intron 55.0%
GACAGGGCCTCCAAAAGCAA+CGG + chr1_4:47688598-47688617 None:intergenic 55.0%
CCAAGTCACGCACCTACCAA+AGG + chr1_4:47689033-47689052 None:intergenic 55.0%
CCTTTGGTAGGTGCGTGACT+TGG - chr1_4:47689030-47689049 Msa0166380:intron 55.0%
GCTGGGCAAGCACTTAACCA+AGG + chr1_4:47689341-47689360 None:intergenic 55.0%
AAGCATGCGCTGGGATCATG+CGG - chr1_4:47689607-47689626 Msa0166380:five_prime_UTR 55.0%
TGGTATCTGCGGGCATGCTA+CGG - chr1_4:47690102-47690121 Msa0166380:five_prime_UTR 55.0%
! GCGGGCATGCTACGGATTTT+TGG - chr1_4:47690110-47690129 Msa0166380:five_prime_UTR 55.0%
CTCGTGCATTGAAAGGCTGG+TGG - chr1_4:47690711-47690730 Msa0166380:intron 55.0%
TAGCAGGACGAAACCTGAGC+AGG - chr1_4:47690810-47690829 Msa0166380:intron 55.0%
CTGCAGCACAACGGTGTACT+CGG + chr1_4:47691008-47691027 None:intergenic 55.0%
GAGGCCATGAAGGATCGGCT+AGG + chr1_4:47681631-47681650 None:intergenic 60.0%
GGTCGGAGGCCATGAAGGAT+CGG + chr1_4:47681636-47681655 None:intergenic 60.0%
! GTATCGGTCGGAGGCCATGA+AGG + chr1_4:47681641-47681660 None:intergenic 60.0%
!! AACACGACGGTATCGGTCGG+AGG + chr1_4:47681650-47681669 None:intergenic 60.0%
AATTCCGGTGCGGTGGTCGA+TGG + chr1_4:47681760-47681779 None:intergenic 60.0%
GGAGAAGAATTCCGGTGCGG+TGG + chr1_4:47681767-47681786 None:intergenic 60.0%
CGCACCGGAATTCTTCTCCG+TGG - chr1_4:47681768-47681787 Msa0166380:exon 60.0%
AGGAATTGCCGGAAGGGGAC+TGG - chr1_4:47688380-47688399 Msa0166380:intron 60.0%
GGAGAACCTCCTAGCTAGGG+AGG - chr1_4:47688441-47688460 Msa0166380:intron 60.0%
TCTCAGCCTCCCTAGCTAGG+AGG + chr1_4:47688450-47688469 None:intergenic 60.0%
CAGGGGACAAAGCATGCGCT+GGG - chr1_4:47689598-47689617 Msa0166380:five_prime_UTR 60.0%
CCTCAGGCCTCACCTTTCCA+CGG + chr1_4:47690181-47690200 None:intergenic 60.0%
GTCACCATCGACCACCGCAC+CGG - chr1_4:47681753-47681772 Msa0166380:three_prime_UTR 65.0%
GGCCTCCAAAAGCAACGGCC+TGG + chr1_4:47688593-47688612 None:intergenic 65.0%
CCAGCGCATGCTTTGTCCCC+TGG + chr1_4:47689600-47689619 None:intergenic 65.0%
CCAGGGGACAAAGCATGCGC+TGG - chr1_4:47689597-47689616 Msa0166380:five_prime_UTR 65.0%
TGCGCTGGGATCATGCGGAG+TGG - chr1_4:47689612-47689631 Msa0166380:five_prime_UTR 65.0%
CCGTGGAAAGGTGAGGCCTG+AGG - chr1_4:47690178-47690197 Msa0166380:five_prime_UTR 65.0%
GGCTGGGGGCAGTGAGACAT+TGG + chr1_4:47690241-47690260 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 47681572 47691383 47681572 ID=Msa0166380;Name=Msa0166380
chr1_4 mRNA 47681572 47691383 47681572 ID=Msa0166380-mRNA-1;Parent=Msa0166380;Name=Msa0166380-mRNA-1;_AED=0.25;_eAED=0.25;_QI=1776|0.81|0.83|1|0.54|0.5|12|209|281
chr1_4 exon 47681572 47681927 47681572 ID=Msa0166380-mRNA-1:exon:13867;Parent=Msa0166380-mRNA-1
chr1_4 exon 47682124 47682264 47682124 ID=Msa0166380-mRNA-1:exon:13866;Parent=Msa0166380-mRNA-1
chr1_4 exon 47682768 47682861 47682768 ID=Msa0166380-mRNA-1:exon:13865;Parent=Msa0166380-mRNA-1
chr1_4 exon 47682953 47683009 47682953 ID=Msa0166380-mRNA-1:exon:13864;Parent=Msa0166380-mRNA-1
chr1_4 exon 47683103 47683167 47683103 ID=Msa0166380-mRNA-1:exon:13863;Parent=Msa0166380-mRNA-1
chr1_4 exon 47684328 47684496 47684328 ID=Msa0166380-mRNA-1:exon:13862;Parent=Msa0166380-mRNA-1
chr1_4 exon 47685796 47685858 47685796 ID=Msa0166380-mRNA-1:exon:13861;Parent=Msa0166380-mRNA-1
chr1_4 exon 47686135 47686331 47686135 ID=Msa0166380-mRNA-1:exon:13860;Parent=Msa0166380-mRNA-1
chr1_4 exon 47686431 47686650 47686431 ID=Msa0166380-mRNA-1:exon:13859;Parent=Msa0166380-mRNA-1
chr1_4 exon 47687169 47687264 47687169 ID=Msa0166380-mRNA-1:exon:13858;Parent=Msa0166380-mRNA-1
chr1_4 exon 47689428 47690581 47689428 ID=Msa0166380-mRNA-1:exon:13857;Parent=Msa0166380-mRNA-1
chr1_4 exon 47691165 47691383 47691165 ID=Msa0166380-mRNA-1:exon:13856;Parent=Msa0166380-mRNA-1
chr1_4 five_prime_UTR 47691165 47691383 47691165 ID=Msa0166380-mRNA-1:five_prime_utr;Parent=Msa0166380-mRNA-1
chr1_4 five_prime_UTR 47689428 47690581 47689428 ID=Msa0166380-mRNA-1:five_prime_utr;Parent=Msa0166380-mRNA-1
chr1_4 five_prime_UTR 47687169 47687264 47687169 ID=Msa0166380-mRNA-1:five_prime_utr;Parent=Msa0166380-mRNA-1
chr1_4 five_prime_UTR 47686431 47686650 47686431 ID=Msa0166380-mRNA-1:five_prime_utr;Parent=Msa0166380-mRNA-1
chr1_4 five_prime_UTR 47686245 47686331 47686245 ID=Msa0166380-mRNA-1:five_prime_utr;Parent=Msa0166380-mRNA-1
chr1_4 CDS 47686135 47686244 47686135 ID=Msa0166380-mRNA-1:cds;Parent=Msa0166380-mRNA-1
chr1_4 CDS 47685796 47685858 47685796 ID=Msa0166380-mRNA-1:cds;Parent=Msa0166380-mRNA-1
chr1_4 CDS 47684328 47684496 47684328 ID=Msa0166380-mRNA-1:cds;Parent=Msa0166380-mRNA-1
chr1_4 CDS 47683103 47683167 47683103 ID=Msa0166380-mRNA-1:cds;Parent=Msa0166380-mRNA-1
chr1_4 CDS 47682953 47683009 47682953 ID=Msa0166380-mRNA-1:cds;Parent=Msa0166380-mRNA-1
chr1_4 CDS 47682768 47682861 47682768 ID=Msa0166380-mRNA-1:cds;Parent=Msa0166380-mRNA-1
chr1_4 CDS 47682124 47682264 47682124 ID=Msa0166380-mRNA-1:cds;Parent=Msa0166380-mRNA-1
chr1_4 CDS 47681781 47681927 47681781 ID=Msa0166380-mRNA-1:cds;Parent=Msa0166380-mRNA-1
chr1_4 three_prime_UTR 47681572 47681780 47681572 ID=Msa0166380-mRNA-1:three_prime_utr;Parent=Msa0166380-mRNA-1
Gene Sequence

>Msa0166380

ATGCGATTATTCTTGTGGGCTGGATTTGAATGTGTCTCAGAGGTGAAAACTGATACACGTGACTTACATGTGAAAACTGAGATGTGCGACTTACATTTGAGCATCCATAGAGATGTCAGTGGCTTACTTGAGAATTCACAAAGAACTCTTTCAAGTATTGATCTGGAGGACCTGGAGGCTGAGAAACTCCCTGAATCTCTTTTGGATGTTATAAAGAAAAAGCAAGAGGGTATATGTTTGGAACCCCTTAATGAGATTGATATAAGATGGAGATTTGTTAATGGCAAAGTTGCTTCTCCTGAAACCAGGCCGTTGCTTTTGGAGGCCCTGTCAATATTCAACGAATGCTTTGATCCTATAGTTGACGCAGCTACTGAACGTGACCTTATTCCTTCCATGGTTTATGGACGGAATTTGCAGACTCAGGATTTTGGAGGAGTGTACTGTGCATTATTAATGGTCAATTCATCTGTGGTATCTGCGGGCATGCTACGGATTTTTGGTACAGATATTGCAGAACTCCCATTAATTGCTACAAGACACAAGAACCGTGGAAAGGGCTACTTCCAAACATTGTTCTCGTGCATTGAAAGGCTGGTGGCCTTCTTGAATGTGAAGAACCTTGTGTTACCAGCTGCTGAAGAAGCAGAATCCATATGGAAATATAAATTTGGGTTTAGCAGGACGAAACCTGAGCAGCTTACCAACTTTAGAAAGAACTGCCAACAGTTGATGGCATTCAAAGGGACAGTTATGCTTCACAAATCGGTGCCTCGATGTCGGATCATTCATAGTCAGTCACGAGAAATCTGTATAAAAAGGTCACTCAAAAGGGGGAAACCCTGA
Protein sequence

>Msa0166380

MRLFLWAGFECVSEVKTDTRDLHVKTEMCDLHLSIHRDVSGLLENSQRTLSSIDLEDLEAEKLPESLLDVIKKKQEGICLEPLNEIDIRWRFVNGKVASPETRPLLLEALSIFNECFDPIVDAATERDLIPSMVYGRNLQTQDFGGVYCALLMVNSSVVSAGMLRIFGTDIAELPLIATRHKNRGKGYFQTLFSCIERLVAFLNVKNLVLPAAEEAESIWKYKFGFSRTKPEQLTNFRKNCQQLMAFKGTVMLHKSVPRCRIIHSQSREICIKRSLKRGKP*