AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1025020

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1025020 MtrunA17_Chr7g0242811 47.847 418 141 7 2 343 650 1066 5.53e-109 344
Msa1025020 MtrunA17_Chr7g0243031 43.545 457 143 11 1 349 134 583 1.85e-98 305
Msa1025020 MtrunA17_Chr7g0242801 43.497 469 144 8 1 348 697 1165 8.01e-96 310
Msa1025020 MtrunA17_Chr5g0394041 46.447 394 160 12 7 353 309 698 2.24e-87 279
Msa1025020 MtrunA17_Chr5g0394041 63.871 155 53 1 1 152 231 385 4.99e-53 187
Msa1025020 MtrunA17_Chr7g0242741 44.928 345 157 8 26 344 8 345 1.07e-74 238
Msa1025020 MtrunA17_Chr2g0319851 42.051 390 166 11 4 343 731 1110 2.19e-72 244
Msa1025020 MtrunA17_Chr2g0319851 66.883 154 48 1 4 154 659 812 1.28e-52 187
Msa1025020 MtrunA17_Chr2g0319821 39.433 388 179 11 7 348 738 1115 1.95e-69 236
Msa1025020 MtrunA17_Chr2g0319821 55.128 156 65 2 4 154 661 816 8.36e-41 153
Msa1025020 MtrunA17_Chr2g0319921 38.889 396 185 10 4 348 706 1095 3.39e-67 229
Msa1025020 MtrunA17_Chr2g0319921 62.179 156 54 2 4 154 632 787 2.57e-47 172
Msa1025020 MtrunA17_Chr7g0242791 55.000 180 56 4 195 349 4 183 1.38e-56 185
Msa1025020 MtrunA17_Chr2g0319811 50.292 171 75 3 161 323 2 170 1.96e-49 164
Msa1025020 MtrunA17_Chr2g0319841 48.045 179 75 4 198 362 4 178 6.68e-42 147
Msa1025020 MtrunA17_Chr2g0319831 43.716 183 81 6 194 373 22 185 8.37e-39 138
Msa1025020 MtrunA17_Chr7g0242751 69.159 107 33 0 2 108 653 759 2.79e-38 145
Msa1025020 MtrunA17_Chr7g0256881 37.725 167 97 4 7 168 620 784 1.74e-21 96.7
Msa1025020 MtrunA17_Chr6g0486481 27.401 354 191 11 4 311 627 960 2.47e-19 90.1
Msa1025020 MtrunA17_Chr6g0486221 25.587 383 198 15 4 312 632 1001 3.64e-19 89.7
Msa1025020 MtrunA17_Chr7g0248121 38.961 154 83 3 7 154 629 777 9.31e-19 88.2
Msa1025020 MtrunA17_Chr6g0485991 25.977 435 224 17 4 362 627 1039 1.51e-18 87.8
Msa1025020 MtrunA17_Chr7g0248521 39.073 151 87 3 7 154 628 776 7.50e-18 85.5
Msa1025020 MtrunA17_Chr7g0248201 37.748 151 89 3 7 154 18 166 8.47e-18 81.6
Msa1025020 MtrunA17_Chr6g0486311 28.713 404 204 18 4 345 625 1006 2.80e-17 84.0
Msa1025020 MtrunA17_Chr4g0041951 27.820 266 136 7 4 230 675 923 3.56e-17 83.6
Msa1025020 MtrunA17_Chr6g0486731 26.131 398 201 14 4 345 627 987 8.68e-17 82.4
Msa1025020 MtrunA17_Chr4g0041441 48.352 91 46 1 4 94 614 703 3.68e-16 80.5
Msa1025020 MtrunA17_Chr6g0486301 28.125 320 154 9 4 253 624 937 4.51e-16 80.1
Msa1025020 MtrunA17_Chr4g0041941 25.788 349 189 12 4 311 619 938 7.25e-16 79.3
Msa1025020 MtrunA17_Chr8g0348541 37.179 156 93 3 2 154 629 782 1.63e-15 78.6
Msa1025020 MtrunA17_Chr4g0041241 25.815 368 203 12 4 311 628 985 1.66e-15 78.2
Msa1025020 MtrunA17_Chr2g0330121 38.235 170 103 1 1 170 447 614 2.02e-15 78.2
Msa1025020 MtrunA17_Chr2g0299561 25.570 395 211 15 4 329 625 1005 3.15e-15 77.4
Msa1025020 MtrunA17_Chr3g0081531 35.065 154 95 3 4 154 615 766 3.78e-15 77.4
Msa1025020 MtrunA17_Chr2g0299811 35.185 162 99 4 1 158 467 626 4.01e-15 77.0
Msa1025020 MtrunA17_Chr7g0248511 39.073 151 87 3 7 154 635 783 4.70e-15 77.0
Msa1025020 MtrunA17_Chr2g0299881 34.667 150 93 3 1 147 624 771 8.15e-15 76.3
Msa1025020 MtrunA17_Chr2g0299851 34.667 150 93 3 1 147 619 766 8.93e-15 76.3
Msa1025020 MtrunA17_Chr4g0041611 27.778 342 160 11 2 265 630 962 1.38e-14 75.5
Msa1025020 MtrunA17_Chr2g0299921 34.000 150 94 3 1 147 618 765 1.52e-14 75.5
Msa1025020 MtrunA17_Chr2g0299841 34.000 150 94 3 1 147 661 808 3.35e-14 74.3
Msa1025020 MtrunA17_Chr4g0042011 26.142 394 189 17 4 311 631 1008 9.66e-14 72.8
Msa1025020 MtrunA17_Chr2g0299791 34.395 157 98 3 1 154 620 774 1.26e-13 72.8
Msa1025020 MtrunA17_Chr8g0363851 37.838 148 84 4 10 152 468 612 2.37e-13 71.6
Msa1025020 MtrunA17_Chr6g0486361 33.889 180 93 4 4 159 624 801 2.66e-13 71.6
Msa1025020 MtrunA17_Chr4g0041431 42.553 94 47 2 4 94 445 534 3.25e-13 71.2
Msa1025020 MtrunA17_Chr3g0084151 34.722 144 89 3 7 147 612 753 9.05e-13 70.1
Msa1025020 MtrunA17_Chr4g0041931 28.056 360 192 17 4 307 636 984 9.71e-13 69.7
Msa1025020 MtrunA17_Chr3g0119601 34.416 154 89 4 7 153 625 773 9.92e-13 69.7
Msa1025020 MtrunA17_Chr3g0084731 35.606 132 80 3 10 138 631 760 2.17e-12 68.6
Msa1025020 MtrunA17_Chr4g0020591 35.393 178 107 4 1 175 626 798 3.07e-12 68.2
Msa1025020 MtrunA17_Chr3g0084721 36.364 132 79 3 10 138 633 762 5.64e-12 67.4
Msa1025020 MtrunA17_Chr3g0084841 33.553 152 96 3 1 149 625 774 7.32e-12 67.0
Msa1025020 MtrunA17_Chr3g0084851 32.895 152 97 3 1 149 624 773 1.44e-11 66.2
Msa1025020 MtrunA17_Chr6g0482141 32.222 180 85 6 7 156 662 834 3.78e-11 65.1
Msa1025020 MtrunA17_Chr4g0041981 50.000 62 31 0 7 68 142 203 5.49e-11 62.4
Msa1025020 MtrunA17_Chr4g0005401 39.610 154 86 6 1 152 649 797 7.88e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1025020 AT3G44670.1 39.073 151 86 3 7 154 718 865 1.49e-18 88.2
Msa1025020 AT3G44670.2 39.073 151 86 3 7 154 718 865 1.49e-18 88.2
Msa1025020 AT3G25510.2 38.961 154 84 6 7 154 533 682 2.38e-15 78.2
Msa1025020 AT3G25510.2 37.662 154 87 4 7 154 580 730 1.33e-13 72.8
Msa1025020 AT3G25510.2 29.744 195 88 4 7 152 462 656 3.30e-11 65.5
Msa1025020 AT3G25510.1 38.961 154 84 6 7 154 533 682 2.38e-15 78.2
Msa1025020 AT3G25510.1 37.662 154 87 4 7 154 580 730 1.33e-13 72.8
Msa1025020 AT3G25510.1 29.744 195 88 4 7 152 462 656 3.30e-11 65.5
Msa1025020 AT3G44400.2 36.585 164 76 4 7 142 672 835 2.74e-15 78.2
Msa1025020 AT3G44400.1 36.585 164 76 4 7 142 672 835 2.74e-15 78.2
Msa1025020 AT3G44400.4 36.585 164 76 4 7 142 672 835 2.74e-15 78.2
Msa1025020 AT3G44400.5 36.585 164 76 4 7 142 672 835 2.74e-15 78.2
Msa1025020 AT3G44400.3 36.585 164 76 4 7 142 672 835 2.74e-15 78.2
Msa1025020 AT5G17680.1 33.708 178 92 2 1 154 621 796 4.69e-15 77.4
Msa1025020 AT5G17680.2 33.708 178 92 2 1 154 622 797 4.82e-15 77.4
Msa1025020 AT1G69550.1 38.411 151 88 3 7 153 1006 1155 5.47e-15 77.4
Msa1025020 AT1G69550.1 38.816 152 88 4 7 154 982 1132 7.49e-15 77.0
Msa1025020 AT1G69550.1 38.562 153 87 5 7 154 958 1108 3.72e-14 74.7
Msa1025020 AT1G69550.1 39.456 147 81 4 7 146 1078 1223 6.31e-14 73.9
Msa1025020 AT1G69550.1 38.816 152 86 5 7 153 1054 1203 6.90e-14 73.9
Msa1025020 AT1G69550.1 40.441 136 78 3 7 140 1101 1235 4.10e-13 71.6
Msa1025020 AT1G69550.1 39.695 131 74 3 27 153 883 1012 7.27e-13 70.9
Msa1025020 AT1G69550.1 34.416 154 96 3 1 150 689 841 8.72e-11 64.3
Msa1025020 AT2G14080.1 38.217 157 92 3 1 153 670 825 1.54e-14 75.9
Msa1025020 AT5G11250.3 39.073 151 84 5 7 152 596 743 1.71e-14 75.9
Msa1025020 AT5G11250.1 39.073 151 84 5 7 152 596 743 1.71e-14 75.9
Msa1025020 AT5G11250.2 39.073 151 84 5 7 152 678 825 1.73e-14 75.9
Msa1025020 AT2G14080.2 38.217 157 92 3 1 153 537 692 2.09e-14 75.5
Msa1025020 AT3G04220.3 36.306 157 93 4 1 152 693 847 2.27e-14 75.1
Msa1025020 AT3G04220.3 35.065 154 88 6 7 152 722 871 2.05e-12 69.3
Msa1025020 AT5G17880.1 35.333 150 94 1 5 154 660 806 2.37e-14 75.1
Msa1025020 AT5G17880.2 35.333 150 94 1 5 154 660 806 2.49e-14 75.1
Msa1025020 AT5G38340.3 37.179 156 89 3 2 157 676 822 2.53e-14 75.1
Msa1025020 AT5G38340.1 37.179 156 89 3 2 157 676 822 2.53e-14 75.1
Msa1025020 AT3G04220.1 36.306 157 93 4 1 152 664 818 3.12e-14 74.7
Msa1025020 AT3G04220.1 35.065 154 88 6 7 152 693 842 2.69e-12 68.9
Msa1025020 AT5G18350.1 35.714 196 107 5 4 181 644 838 4.14e-14 74.7
Msa1025020 AT5G38340.2 40.945 127 74 1 2 128 470 595 4.87e-14 74.3
Msa1025020 AT5G44510.1 34.286 175 88 4 7 154 659 833 1.72e-13 72.8
Msa1025020 AT5G44510.1 34.868 152 94 3 7 154 754 904 3.53e-11 65.5
Msa1025020 AT5G44510.2 34.286 175 88 4 7 154 659 833 1.84e-13 72.4
Msa1025020 AT5G44510.2 34.868 152 94 3 7 154 754 904 3.75e-11 65.5
Msa1025020 AT5G44510.4 34.286 175 88 4 7 154 659 833 1.90e-13 72.4
Msa1025020 AT5G44510.4 34.868 152 94 3 7 154 754 904 4.26e-11 65.1
Msa1025020 AT5G44510.3 34.286 175 88 4 7 154 659 833 2.22e-13 72.4
Msa1025020 AT5G44510.3 34.868 152 94 3 7 154 754 904 4.80e-11 65.1
Msa1025020 AT5G44870.1 34.667 150 95 1 5 154 701 847 3.24e-13 71.6
Msa1025020 AT3G44480.4 36.184 152 91 3 7 154 716 865 4.91e-13 71.2
Msa1025020 AT3G44480.1 36.184 152 91 3 7 154 716 865 4.91e-13 71.2
Msa1025020 AT5G44870.2 34.667 150 95 1 5 154 437 583 5.00e-13 71.2
Msa1025020 AT3G44480.3 36.184 152 91 3 7 154 716 865 5.47e-13 71.2
Msa1025020 AT3G44480.5 36.184 152 91 3 7 154 716 865 5.47e-13 71.2
Msa1025020 AT3G44480.2 36.601 153 89 4 7 154 716 865 5.97e-13 70.9
Msa1025020 AT4G12020.7 37.427 171 81 3 7 153 1252 1420 7.73e-13 70.9
Msa1025020 AT4G12020.1 37.427 171 81 3 7 153 1260 1428 8.23e-13 70.5
Msa1025020 AT4G12020.9 37.427 171 81 3 7 153 1260 1428 8.23e-13 70.5
Msa1025020 AT4G12020.5 37.427 171 81 3 7 153 1185 1353 8.78e-13 70.5
Msa1025020 AT4G12020.2 37.427 171 81 3 7 153 1260 1428 8.83e-13 70.5
Msa1025020 AT4G12020.6 37.427 171 81 3 7 153 1252 1420 8.90e-13 70.5
Msa1025020 AT4G12020.8 37.427 171 81 3 7 153 1252 1420 8.90e-13 70.5
Msa1025020 AT4G12020.4 37.427 171 81 3 7 153 1252 1420 9.06e-13 70.5
Msa1025020 AT4G12020.3 37.427 171 81 3 7 153 1260 1428 9.99e-13 70.5
Msa1025020 AT4G12020.10 37.427 171 81 3 7 153 1252 1420 1.03e-12 70.5
Msa1025020 AT4G16890.3 35.714 154 96 2 1 154 769 919 1.48e-12 69.7
Msa1025020 AT4G19050.1 32.386 176 86 5 7 154 704 874 1.59e-12 69.7
Msa1025020 AT4G16890.5 35.714 154 96 2 1 154 769 919 1.91e-12 69.3
Msa1025020 AT4G16890.1 35.714 154 96 2 1 154 778 928 1.99e-12 69.3
Msa1025020 AT5G45230.1 34.899 149 94 1 5 153 658 803 2.14e-12 69.3
Msa1025020 AT5G38350.1 36.000 150 94 1 2 151 475 622 2.16e-12 68.9
Msa1025020 AT4G16920.2 34.463 177 90 4 1 154 906 1079 4.35e-12 68.2
Msa1025020 AT4G16920.8 34.463 177 90 4 1 154 906 1079 4.35e-12 68.2
Msa1025020 AT4G16920.3 34.463 177 90 4 1 154 906 1079 4.43e-12 68.2
Msa1025020 AT4G16920.5 34.463 177 90 4 1 154 906 1079 4.43e-12 68.2
Msa1025020 AT4G16950.1 34.463 177 90 4 1 154 912 1085 4.81e-12 68.2
Msa1025020 AT4G16950.3 34.463 177 90 4 1 154 912 1085 4.89e-12 68.2
Msa1025020 AT4G16920.6 34.463 177 90 4 1 154 906 1079 4.89e-12 68.2
Msa1025020 AT4G16920.1 34.463 177 90 4 1 154 906 1079 5.06e-12 68.2
Msa1025020 AT4G16920.9 34.463 177 90 4 1 154 906 1079 5.06e-12 68.2
Msa1025020 AT4G16920.4 34.463 177 90 4 1 154 906 1079 5.45e-12 68.2
Msa1025020 AT4G16920.7 34.463 177 90 4 1 154 906 1079 5.45e-12 68.2
Msa1025020 AT4G16950.4 34.463 177 90 4 1 154 912 1085 5.84e-12 67.8
Msa1025020 AT4G16950.2 34.463 177 90 4 1 154 912 1085 6.82e-12 67.8
Msa1025020 AT2G17060.2 35.135 148 93 1 7 154 683 827 9.67e-12 67.0
Msa1025020 AT2G17060.1 35.570 149 91 2 7 154 683 827 1.19e-11 67.0
Msa1025020 AT4G08450.1 28.571 196 93 3 4 154 631 824 1.52e-11 66.6
Msa1025020 AT4G08450.2 28.571 196 93 3 4 154 631 824 2.14e-11 66.2
Msa1025020 AT4G16860.1 32.680 153 101 1 1 153 923 1073 5.37e-11 64.7
Msa1025020 AT5G40060.1 38.835 103 61 1 4 106 439 539 6.82e-11 64.3
Msa1025020 AT4G16860.2 32.680 153 101 1 1 153 761 911 7.97e-11 64.3
Msa1025020 AT4G19510.2 34.868 152 88 5 7 154 633 777 8.40e-11 64.3
Msa1025020 AT4G19510.10 34.868 152 88 5 7 154 633 777 8.63e-11 63.9
Msa1025020 AT5G40060.2 38.835 103 61 1 4 106 439 539 9.11e-11 63.9
Msa1025020 AT4G19510.3 34.868 152 88 5 7 154 673 817 9.58e-11 63.9
Msa1025020 AT4G12010.1 33.108 148 97 1 7 154 645 790 9.60e-11 63.9
Msa1025020 AT5G18360.1 33.333 141 84 2 2 138 627 761 9.77e-11 63.9

Find 64 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTGATGCGCCACTTAATT+TGG 0.151359 7_1:-55107075 Msa1025020:CDS
ACTTAATTTGGAACGGAATA+TGG 0.188565 7_1:-55107063 Msa1025020:CDS
TGTTGAGAACTTGCAGAATT+TGG 0.210118 7_1:+55107158 None:intergenic
CTTAAGACTCTAAGCTTTAC+AGG 0.227454 7_1:+55108356 None:intergenic
TTGATGGCAGAAAATATATT+TGG 0.242328 7_1:-55107040 Msa1025020:CDS
TTGAAGATATGGAGAGAATT+TGG 0.255048 7_1:+55107903 None:intergenic
TGACGCATCAATGTCTTTCT+TGG 0.272218 7_1:+55106908 None:intergenic
AGTCTAGTCGACCTTGATTT+TGG 0.272457 7_1:-55108524 Msa1025020:CDS
TCTGAGGAATGATGATAAAA+AGG 0.283542 7_1:+55107305 None:intergenic
GATCTAGCTGCTCAAGGTTT+AGG 0.285298 7_1:+55108633 None:intergenic
GGAGAGAATTTGGCCAAATT+AGG 0.308211 7_1:+55107913 None:intergenic
GTCATTGTTTCAAGGCTATC+AGG 0.322869 7_1:+55108302 None:intergenic
CTTGAGCAGCTAGATCTTAC+AGG 0.325774 7_1:-55108626 Msa1025020:CDS
GAAAGAACTCCAGATTTAAC+TGG 0.325975 7_1:-55108443 Msa1025020:CDS
TTTAATGCTCCAGTTAAATC+TGG 0.331473 7_1:+55108434 None:intergenic
CTCCATATCTTCAATATAGA+TGG 0.355510 7_1:-55107894 Msa1025020:CDS
TCAGAAAGAAATCCAATTGA+TGG 0.371408 7_1:+55108578 None:intergenic
TGGCCCGAATACCAATATAA+AGG 0.374902 7_1:-55107272 Msa1025020:CDS
TTGCAGGTGCATCCATCAAT+TGG 0.375167 7_1:-55108590 Msa1025020:CDS
AAAGAAAGATAGAAAGGATA+TGG 0.381720 7_1:+55107122 None:intergenic
AGCCATCTATATTGAAGATA+TGG 0.385788 7_1:+55107892 None:intergenic
GGCCCGAATACCAATATAAA+GGG 0.393070 7_1:-55107271 Msa1025020:CDS
AATGACATCTCTTATAACTT+TGG 0.394565 7_1:-55108285 Msa1025020:CDS
AGGATGCATAAACTTGTTGC+AGG 0.412900 7_1:-55108606 Msa1025020:CDS
TTGGCAGTGCATCACGGTTA+CGG 0.422182 7_1:-55108505 Msa1025020:CDS
TTGGAACGGAATATGGTTGA+TGG 0.424841 7_1:-55107056 Msa1025020:CDS
ACTTTGATATGCATGTTGAT+TGG 0.429591 7_1:-55107226 Msa1025020:CDS
AAAGGATATGGCAGTGGAAA+AGG 0.436584 7_1:+55107134 None:intergenic
TAAGAGATGTCATTGTTTCA+AGG 0.441402 7_1:+55108294 None:intergenic
GGTACAGTTACAAGAGGAAC+AGG 0.445170 7_1:-55106855 Msa1025020:CDS
CTTTGATATGCATGTTGATT+GGG 0.446626 7_1:-55107225 Msa1025020:CDS
AACTTGCAGAATTTGGCATT+GGG 0.461396 7_1:+55107165 None:intergenic
CTTTCAAAAGAAAGATAGAA+AGG 0.468364 7_1:+55107116 None:intergenic
ATATTCCGTTCCAAATTAAG+TGG 0.474436 7_1:+55107065 None:intergenic
GGATCTCATGATCACAGATC+AGG 0.478392 7_1:-55107955 Msa1025020:CDS
AAGACATTGATGCGTCAGAC+TGG 0.484830 7_1:-55106902 Msa1025020:CDS
GGAGTAAGCTATTGCTAAAG+AGG 0.486591 7_1:-55106881 Msa1025020:CDS
GAACTTGCAGAATTTGGCAT+TGG 0.487999 7_1:+55107164 None:intergenic
TCTTATAATCAAACCTTGGT+AGG 0.508204 7_1:+55106953 None:intergenic
AGATAGAAAGGATATGGCAG+TGG 0.522745 7_1:+55107128 None:intergenic
AGGTTTGATTATAAGAGAGT+GGG 0.536441 7_1:-55106946 Msa1025020:CDS
GTGATGCACTGCCAAAATCA+AGG 0.538052 7_1:+55108513 None:intergenic
TCTACCCTGTTTGAAAAGGA+TGG 0.539200 7_1:-55108705 Msa1025020:CDS
AAGGTTTGATTATAAGAGAG+TGG 0.541445 7_1:-55106947 Msa1025020:CDS
ACACATTTATCTTCATTTCG+TGG 0.550488 7_1:-55108383 Msa1025020:CDS
AGGAACAGGATTACAAATTG+AGG 0.558506 7_1:-55106841 Msa1025020:CDS
CTGTAAGATCTAGCTGCTCA+AGG 0.567869 7_1:+55108627 None:intergenic
ATGCGCCACTTAATTTGGAA+CGG 0.571402 7_1:-55107070 Msa1025020:CDS
GTGTGCATCGATCAACATCA+AGG 0.581908 7_1:+55108402 None:intergenic
AGTGTCTACCCTGTTTGAAA+AGG 0.585006 7_1:-55108709 Msa1025020:CDS
ACTCTCTTATAATCAAACCT+TGG 0.593748 7_1:+55106949 None:intergenic
AAGCTATTGCTAAAGAGGAA+AGG 0.607189 7_1:-55106876 Msa1025020:CDS
AGGAAAGGTACAGTTACAAG+AGG 0.610459 7_1:-55106861 Msa1025020:CDS
ATCGCATTTAAAGCCTACCA+AGG 0.614912 7_1:-55106966 Msa1025020:CDS
GGTTTGATTATAAGAGAGTG+GGG 0.617044 7_1:-55106945 Msa1025020:CDS
GTTTGATTATAAGAGAGTGG+GGG 0.619112 7_1:-55106944 Msa1025020:CDS
TTTAGGATTCCATCAAAACA+TGG 0.620049 7_1:+55108650 None:intergenic
GATATGCATGTTGATTGGGT+CGG 0.625717 7_1:-55107221 Msa1025020:CDS
TATTGGTATTCGGGCCACGT+TGG 0.630025 7_1:+55107278 None:intergenic
GCCCGAATACCAATATAAAG+GGG 0.639867 7_1:-55107270 Msa1025020:CDS
GGGCCACGTTGGAATGTCTG+AGG 0.645948 7_1:+55107289 None:intergenic
CCCGAATACCAATATAAAGG+GGG 0.685847 7_1:-55107269 Msa1025020:CDS
AAGCCGCACCGAAAATGACG+AGG 0.709482 7_1:+55107341 None:intergenic
ATTCCTCAGACATTCCAACG+TGG 0.797381 7_1:-55107292 Msa1025020:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGATATTTTAAAACAACATC+TGG - chr7_1:55107567-55107586 Msa1025020:intron 20.0%
!! ATTATGATCAGTTGAATAAA+GGG + chr7_1:55108029-55108048 None:intergenic 20.0%
!! TATTATGATCAGTTGAATAA+AGG + chr7_1:55108030-55108049 None:intergenic 20.0%
!!! TACTTGTTTTAATTTTCTTC+TGG - chr7_1:55108171-55108190 Msa1025020:intron 20.0%
!!! TTTCTATCTTTCTTTTGAAA+GGG - chr7_1:55108429-55108448 Msa1025020:CDS 20.0%
!!! AGATATTTTAAAACAACATC+TGG - chr7_1:55107567-55107586 Msa1025020:intron 20.0%
!! ATTATGATCAGTTGAATAAA+GGG + chr7_1:55108029-55108048 None:intergenic 20.0%
!! TATTATGATCAGTTGAATAA+AGG + chr7_1:55108030-55108049 None:intergenic 20.0%
!!! TACTTGTTTTAATTTTCTTC+TGG - chr7_1:55108171-55108190 Msa1025020:intron 20.0%
!!! TTTCTATCTTTCTTTTGAAA+GGG - chr7_1:55108429-55108448 Msa1025020:CDS 20.0%
! AATGACATCTCTTATAACTT+TGG - chr7_1:55107258-55107277 Msa1025020:CDS 25.0%
!! TATGGAATCTTTGATTTATC+TGG - chr7_1:55107329-55107348 Msa1025020:CDS 25.0%
! TTTAGAGAGACTAAATTTAC+AGG - chr7_1:55107411-55107430 Msa1025020:intron 25.0%
! TTAGAGAGACTAAATTTACA+GGG - chr7_1:55107412-55107431 Msa1025020:intron 25.0%
!!! GGTATATATTTTGAAGTTCA+AGG + chr7_1:55107872-55107891 None:intergenic 25.0%
!! TGCATCGGATTTAAATATTT+TGG + chr7_1:55107921-55107940 None:intergenic 25.0%
! TTATGATCAGTTGAATAAAG+GGG + chr7_1:55108028-55108047 None:intergenic 25.0%
!!! TTTTAATTTTCTTCTGGTAC+AGG - chr7_1:55108177-55108196 Msa1025020:intron 25.0%
! AAAGAAAGATAGAAAGGATA+TGG + chr7_1:55108424-55108443 None:intergenic 25.0%
! CTTTCAAAAGAAAGATAGAA+AGG + chr7_1:55108430-55108449 None:intergenic 25.0%
!! CTTTCTATCTTTCTTTTGAA+AGG - chr7_1:55108428-55108447 Msa1025020:CDS 25.0%
!! TTGATGGCAGAAAATATATT+TGG - chr7_1:55108503-55108522 Msa1025020:CDS 25.0%
! AATGACATCTCTTATAACTT+TGG - chr7_1:55107258-55107277 Msa1025020:CDS 25.0%
!! TATGGAATCTTTGATTTATC+TGG - chr7_1:55107329-55107348 Msa1025020:CDS 25.0%
! TTTAGAGAGACTAAATTTAC+AGG - chr7_1:55107411-55107430 Msa1025020:intron 25.0%
! TTAGAGAGACTAAATTTACA+GGG - chr7_1:55107412-55107431 Msa1025020:intron 25.0%
!!! GGTATATATTTTGAAGTTCA+AGG + chr7_1:55107872-55107891 None:intergenic 25.0%
!! TGCATCGGATTTAAATATTT+TGG + chr7_1:55107921-55107940 None:intergenic 25.0%
! TTATGATCAGTTGAATAAAG+GGG + chr7_1:55108028-55108047 None:intergenic 25.0%
!!! TTTTAATTTTCTTCTGGTAC+AGG - chr7_1:55108177-55108196 Msa1025020:intron 25.0%
! AAAGAAAGATAGAAAGGATA+TGG + chr7_1:55108424-55108443 None:intergenic 25.0%
! CTTTCAAAAGAAAGATAGAA+AGG + chr7_1:55108430-55108449 None:intergenic 25.0%
!! CTTTCTATCTTTCTTTTGAA+AGG - chr7_1:55108428-55108447 Msa1025020:CDS 25.0%
!! TTGATGGCAGAAAATATATT+TGG - chr7_1:55108503-55108522 Msa1025020:CDS 25.0%
!! AAGATGATTCCATGTTTTGA+TGG - chr7_1:55106884-55106903 Msa1025020:CDS 30.0%
! TTTAGGATTCCATCAAAACA+TGG + chr7_1:55106896-55106915 None:intergenic 30.0%
TCAGAAAGAAATCCAATTGA+TGG + chr7_1:55106968-55106987 None:intergenic 30.0%
TTTAATGCTCCAGTTAAATC+TGG + chr7_1:55107112-55107131 None:intergenic 30.0%
ACACATTTATCTTCATTTCG+TGG - chr7_1:55107160-55107179 Msa1025020:CDS 30.0%
TAAGAGATGTCATTGTTTCA+AGG + chr7_1:55107252-55107271 None:intergenic 30.0%
CTTATAACTTTGGATCTATG+TGG - chr7_1:55107268-55107287 Msa1025020:CDS 30.0%
GTACTGTAGAAATATTGCAA+AGG + chr7_1:55107362-55107381 None:intergenic 30.0%
! TGTTTTCGACTATCCTAATT+TGG - chr7_1:55107617-55107636 Msa1025020:intron 30.0%
TTGAAGATATGGAGAGAATT+TGG + chr7_1:55107643-55107662 None:intergenic 30.0%
CTCCATATCTTCAATATAGA+TGG - chr7_1:55107649-55107668 Msa1025020:intron 30.0%
AGCCATCTATATTGAAGATA+TGG + chr7_1:55107654-55107673 None:intergenic 30.0%
! ATGGCTACAAAGACATTTTA+AGG - chr7_1:55107668-55107687 Msa1025020:intron 30.0%
AAGTAGACAAACAAACTAAG+TGG + chr7_1:55107726-55107745 None:intergenic 30.0%
TCCTATTATATGAGTTCCAT+TGG - chr7_1:55107749-55107768 Msa1025020:intron 30.0%
ACCAATGGAACTCATATAAT+AGG + chr7_1:55107753-55107772 None:intergenic 30.0%
AAGTTCAAGGAACATTATGT+GGG + chr7_1:55107859-55107878 None:intergenic 30.0%
ATATATACCTTGTACTGTCA+AGG - chr7_1:55107883-55107902 Msa1025020:CDS 30.0%
TATATACCTTGTACTGTCAA+GGG - chr7_1:55107884-55107903 Msa1025020:CDS 30.0%
AAATCGTGACATGATTATCA+AGG + chr7_1:55107988-55108007 None:intergenic 30.0%
TCTGAGGAATGATGATAAAA+AGG + chr7_1:55108241-55108260 None:intergenic 30.0%
TTATTGAACCCCCTTTATAT+TGG + chr7_1:55108285-55108304 None:intergenic 30.0%
ATAAAGGGGGTTCAATAATA+AGG - chr7_1:55108287-55108306 Msa1025020:CDS 30.0%
ACTTTGATATGCATGTTGAT+TGG - chr7_1:55108317-55108336 Msa1025020:CDS 30.0%
! CTTTGATATGCATGTTGATT+GGG - chr7_1:55108318-55108337 Msa1025020:CDS 30.0%
ATATTCCGTTCCAAATTAAG+TGG + chr7_1:55108481-55108500 None:intergenic 30.0%
! ACTTAATTTGGAACGGAATA+TGG - chr7_1:55108480-55108499 Msa1025020:CDS 30.0%
TCTTATAATCAAACCTTGGT+AGG + chr7_1:55108593-55108612 None:intergenic 30.0%
ACTCTCTTATAATCAAACCT+TGG + chr7_1:55108597-55108616 None:intergenic 30.0%
AAGGTTTGATTATAAGAGAG+TGG - chr7_1:55108596-55108615 Msa1025020:CDS 30.0%
AGGTTTGATTATAAGAGAGT+GGG - chr7_1:55108597-55108616 Msa1025020:CDS 30.0%
!! AAGATGATTCCATGTTTTGA+TGG - chr7_1:55106884-55106903 Msa1025020:CDS 30.0%
! TTTAGGATTCCATCAAAACA+TGG + chr7_1:55106896-55106915 None:intergenic 30.0%
TCAGAAAGAAATCCAATTGA+TGG + chr7_1:55106968-55106987 None:intergenic 30.0%
TTTAATGCTCCAGTTAAATC+TGG + chr7_1:55107112-55107131 None:intergenic 30.0%
ACACATTTATCTTCATTTCG+TGG - chr7_1:55107160-55107179 Msa1025020:CDS 30.0%
TAAGAGATGTCATTGTTTCA+AGG + chr7_1:55107252-55107271 None:intergenic 30.0%
CTTATAACTTTGGATCTATG+TGG - chr7_1:55107268-55107287 Msa1025020:CDS 30.0%
GTACTGTAGAAATATTGCAA+AGG + chr7_1:55107362-55107381 None:intergenic 30.0%
! TGTTTTCGACTATCCTAATT+TGG - chr7_1:55107617-55107636 Msa1025020:intron 30.0%
TTGAAGATATGGAGAGAATT+TGG + chr7_1:55107643-55107662 None:intergenic 30.0%
CTCCATATCTTCAATATAGA+TGG - chr7_1:55107649-55107668 Msa1025020:intron 30.0%
AGCCATCTATATTGAAGATA+TGG + chr7_1:55107654-55107673 None:intergenic 30.0%
! ATGGCTACAAAGACATTTTA+AGG - chr7_1:55107668-55107687 Msa1025020:intron 30.0%
AAGTAGACAAACAAACTAAG+TGG + chr7_1:55107726-55107745 None:intergenic 30.0%
TCCTATTATATGAGTTCCAT+TGG - chr7_1:55107749-55107768 Msa1025020:intron 30.0%
ACCAATGGAACTCATATAAT+AGG + chr7_1:55107753-55107772 None:intergenic 30.0%
AAGTTCAAGGAACATTATGT+GGG + chr7_1:55107859-55107878 None:intergenic 30.0%
ATATATACCTTGTACTGTCA+AGG - chr7_1:55107883-55107902 Msa1025020:CDS 30.0%
TATATACCTTGTACTGTCAA+GGG - chr7_1:55107884-55107903 Msa1025020:CDS 30.0%
AAATCGTGACATGATTATCA+AGG + chr7_1:55107988-55108007 None:intergenic 30.0%
TCTGAGGAATGATGATAAAA+AGG + chr7_1:55108241-55108260 None:intergenic 30.0%
TTATTGAACCCCCTTTATAT+TGG + chr7_1:55108285-55108304 None:intergenic 30.0%
ATAAAGGGGGTTCAATAATA+AGG - chr7_1:55108287-55108306 Msa1025020:CDS 30.0%
ACTTTGATATGCATGTTGAT+TGG - chr7_1:55108317-55108336 Msa1025020:CDS 30.0%
! CTTTGATATGCATGTTGATT+GGG - chr7_1:55108318-55108337 Msa1025020:CDS 30.0%
ATATTCCGTTCCAAATTAAG+TGG + chr7_1:55108481-55108500 None:intergenic 30.0%
! ACTTAATTTGGAACGGAATA+TGG - chr7_1:55108480-55108499 Msa1025020:CDS 30.0%
TCTTATAATCAAACCTTGGT+AGG + chr7_1:55108593-55108612 None:intergenic 30.0%
ACTCTCTTATAATCAAACCT+TGG + chr7_1:55108597-55108616 None:intergenic 30.0%
AAGGTTTGATTATAAGAGAG+TGG - chr7_1:55108596-55108615 Msa1025020:CDS 30.0%
AGGTTTGATTATAAGAGAGT+GGG - chr7_1:55108597-55108616 Msa1025020:CDS 30.0%
! AGATCCATCCTTTTCAAACA+GGG + chr7_1:55106845-55106864 None:intergenic 35.0%
GAAAGAACTCCAGATTTAAC+TGG - chr7_1:55107100-55107119 Msa1025020:CDS 35.0%
CTTAAGACTCTAAGCTTTAC+AGG + chr7_1:55107190-55107209 None:intergenic 35.0%
TCTGCATATCAATTCAGCTA+TGG - chr7_1:55107311-55107330 Msa1025020:CDS 35.0%
ATTCTCCAATAGCTAGCATT+AGG + chr7_1:55107384-55107403 None:intergenic 35.0%
TGCTAGCTATTGGAGAATTA+AGG - chr7_1:55107386-55107405 Msa1025020:intron 35.0%
GCTAGCTATTGGAGAATTAA+GGG - chr7_1:55107387-55107406 Msa1025020:intron 35.0%
CTAGCTATTGGAGAATTAAG+GGG - chr7_1:55107388-55107407 Msa1025020:intron 35.0%
TAGATTGTGAAGATGACTCA+CGG + chr7_1:55107463-55107482 None:intergenic 35.0%
AAACTAAGTGGAGAGAAAGA+GGG + chr7_1:55107714-55107733 None:intergenic 35.0%
! TGAGTTCCATTGGTTAGTAA+AGG - chr7_1:55107759-55107778 Msa1025020:intron 35.0%
GAAGTTCAAGGAACATTATG+TGG + chr7_1:55107860-55107879 None:intergenic 35.0%
ACCCCCTTTATATTGGTATT+CGG + chr7_1:55108278-55108297 None:intergenic 35.0%
! TGTCTTTTCGGTACAATTTG+AGG - chr7_1:55108348-55108367 Msa1025020:CDS 35.0%
AACTTGCAGAATTTGGCATT+GGG + chr7_1:55108381-55108400 None:intergenic 35.0%
TGTTGAGAACTTGCAGAATT+TGG + chr7_1:55108388-55108407 None:intergenic 35.0%
ATTTGATGCGCCACTTAATT+TGG - chr7_1:55108468-55108487 Msa1025020:CDS 35.0%
! GTGCTTCTGTTTTCACAAAA+TGG + chr7_1:55108555-55108574 None:intergenic 35.0%
GGTTTGATTATAAGAGAGTG+GGG - chr7_1:55108598-55108617 Msa1025020:CDS 35.0%
GTTTGATTATAAGAGAGTGG+GGG - chr7_1:55108599-55108618 Msa1025020:CDS 35.0%
AAGCTATTGCTAAAGAGGAA+AGG - chr7_1:55108667-55108686 Msa1025020:CDS 35.0%
AGGAACAGGATTACAAATTG+AGG - chr7_1:55108702-55108721 Msa1025020:CDS 35.0%
! AGATCCATCCTTTTCAAACA+GGG + chr7_1:55106845-55106864 None:intergenic 35.0%
GAAAGAACTCCAGATTTAAC+TGG - chr7_1:55107100-55107119 Msa1025020:CDS 35.0%
CTTAAGACTCTAAGCTTTAC+AGG + chr7_1:55107190-55107209 None:intergenic 35.0%
TCTGCATATCAATTCAGCTA+TGG - chr7_1:55107311-55107330 Msa1025020:CDS 35.0%
ATTCTCCAATAGCTAGCATT+AGG + chr7_1:55107384-55107403 None:intergenic 35.0%
TGCTAGCTATTGGAGAATTA+AGG - chr7_1:55107386-55107405 Msa1025020:intron 35.0%
GCTAGCTATTGGAGAATTAA+GGG - chr7_1:55107387-55107406 Msa1025020:intron 35.0%
CTAGCTATTGGAGAATTAAG+GGG - chr7_1:55107388-55107407 Msa1025020:intron 35.0%
TAGATTGTGAAGATGACTCA+CGG + chr7_1:55107463-55107482 None:intergenic 35.0%
AAACTAAGTGGAGAGAAAGA+GGG + chr7_1:55107714-55107733 None:intergenic 35.0%
! TGAGTTCCATTGGTTAGTAA+AGG - chr7_1:55107759-55107778 Msa1025020:intron 35.0%
GAAGTTCAAGGAACATTATG+TGG + chr7_1:55107860-55107879 None:intergenic 35.0%
ACCCCCTTTATATTGGTATT+CGG + chr7_1:55108278-55108297 None:intergenic 35.0%
! TGTCTTTTCGGTACAATTTG+AGG - chr7_1:55108348-55108367 Msa1025020:CDS 35.0%
AACTTGCAGAATTTGGCATT+GGG + chr7_1:55108381-55108400 None:intergenic 35.0%
TGTTGAGAACTTGCAGAATT+TGG + chr7_1:55108388-55108407 None:intergenic 35.0%
ATTTGATGCGCCACTTAATT+TGG - chr7_1:55108468-55108487 Msa1025020:CDS 35.0%
! GTGCTTCTGTTTTCACAAAA+TGG + chr7_1:55108555-55108574 None:intergenic 35.0%
GGTTTGATTATAAGAGAGTG+GGG - chr7_1:55108598-55108617 Msa1025020:CDS 35.0%
GTTTGATTATAAGAGAGTGG+GGG - chr7_1:55108599-55108618 Msa1025020:CDS 35.0%
AAGCTATTGCTAAAGAGGAA+AGG - chr7_1:55108667-55108686 Msa1025020:CDS 35.0%
AGGAACAGGATTACAAATTG+AGG - chr7_1:55108702-55108721 Msa1025020:CDS 35.0%
AGTGTCTACCCTGTTTGAAA+AGG - chr7_1:55106834-55106853 Msa1025020:CDS 40.0%
TCTACCCTGTTTGAAAAGGA+TGG - chr7_1:55106838-55106857 Msa1025020:CDS 40.0%
! CAGATCCATCCTTTTCAAAC+AGG + chr7_1:55106846-55106865 None:intergenic 40.0%
!! AGGATGCATAAACTTGTTGC+AGG - chr7_1:55106937-55106956 Msa1025020:CDS 40.0%
! AGTCTAGTCGACCTTGATTT+TGG - chr7_1:55107019-55107038 Msa1025020:CDS 40.0%
!! TTGATTTTGGCAGTGCATCA+CGG - chr7_1:55107032-55107051 Msa1025020:CDS 40.0%
! TTGAGAGTTTTACGTCTCTC+TGG - chr7_1:55107064-55107083 Msa1025020:CDS 40.0%
GTCATTGTTTCAAGGCTATC+AGG + chr7_1:55107244-55107263 None:intergenic 40.0%
CAGTACCTAATGCTAGCTAT+TGG - chr7_1:55107376-55107395 Msa1025020:intron 40.0%
TCTTCGATCCCAATACAAAG+TGG - chr7_1:55107525-55107544 Msa1025020:intron 40.0%
! CTGATGGACCACTTTGTATT+GGG + chr7_1:55107536-55107555 None:intergenic 40.0%
! TCTGATGGACCACTTTGTAT+TGG + chr7_1:55107537-55107556 None:intergenic 40.0%
GGAGAGAATTTGGCCAAATT+AGG + chr7_1:55107633-55107652 None:intergenic 40.0%
GGAGAGAAAGAGGGAAATAT+AGG + chr7_1:55107705-55107724 None:intergenic 40.0%
CAAACTAAGTGGAGAGAAAG+AGG + chr7_1:55107715-55107734 None:intergenic 40.0%
! GTTCCATTGGTTAGTAAAGG+CGG - chr7_1:55107762-55107781 Msa1025020:intron 40.0%
ATGTGAGAGATTCACACTTG+AGG - chr7_1:55107798-55107817 Msa1025020:intron 40.0%
TGTGAGAGATTCACACTTGA+GGG - chr7_1:55107799-55107818 Msa1025020:intron 40.0%
ACACTTGAGGGGATGATTAA+TGG - chr7_1:55107811-55107830 Msa1025020:intron 40.0%
! AATGAAGCACTCTCATGCAT+CGG + chr7_1:55107936-55107955 None:intergenic 40.0%
!! TACAGGAACCTCGTCATTTT+CGG - chr7_1:55108194-55108213 Msa1025020:intron 40.0%
TGGCCCGAATACCAATATAA+AGG - chr7_1:55108271-55108290 Msa1025020:intron 40.0%
GGCCCGAATACCAATATAAA+GGG - chr7_1:55108272-55108291 Msa1025020:intron 40.0%
GCCCGAATACCAATATAAAG+GGG - chr7_1:55108273-55108292 Msa1025020:intron 40.0%
CCCCCTTTATATTGGTATTC+GGG + chr7_1:55108277-55108296 None:intergenic 40.0%
CCCGAATACCAATATAAAGG+GGG - chr7_1:55108274-55108293 Msa1025020:intron 40.0%
! GATATGCATGTTGATTGGGT+CGG - chr7_1:55108322-55108341 Msa1025020:CDS 40.0%
!! TTGGGTCGGTTTTGTCTTTT+CGG - chr7_1:55108336-55108355 Msa1025020:CDS 40.0%
GAACTTGCAGAATTTGGCAT+TGG + chr7_1:55108382-55108401 None:intergenic 40.0%
AAAGGATATGGCAGTGGAAA+AGG + chr7_1:55108412-55108431 None:intergenic 40.0%
AGATAGAAAGGATATGGCAG+TGG + chr7_1:55108418-55108437 None:intergenic 40.0%
! ATGCGCCACTTAATTTGGAA+CGG - chr7_1:55108473-55108492 Msa1025020:CDS 40.0%
TTGGAACGGAATATGGTTGA+TGG - chr7_1:55108487-55108506 Msa1025020:CDS 40.0%
! ATCGCATTTAAAGCCTACCA+AGG - chr7_1:55108577-55108596 Msa1025020:CDS 40.0%
TGACGCATCAATGTCTTTCT+TGG + chr7_1:55108638-55108657 None:intergenic 40.0%
GGAGTAAGCTATTGCTAAAG+AGG - chr7_1:55108662-55108681 Msa1025020:CDS 40.0%
! AGGAAAGGTACAGTTACAAG+AGG - chr7_1:55108682-55108701 Msa1025020:CDS 40.0%
AGTGTCTACCCTGTTTGAAA+AGG - chr7_1:55106834-55106853 Msa1025020:CDS 40.0%
TCTACCCTGTTTGAAAAGGA+TGG - chr7_1:55106838-55106857 Msa1025020:CDS 40.0%
! CAGATCCATCCTTTTCAAAC+AGG + chr7_1:55106846-55106865 None:intergenic 40.0%
!! AGGATGCATAAACTTGTTGC+AGG - chr7_1:55106937-55106956 Msa1025020:CDS 40.0%
! AGTCTAGTCGACCTTGATTT+TGG - chr7_1:55107019-55107038 Msa1025020:CDS 40.0%
!! TTGATTTTGGCAGTGCATCA+CGG - chr7_1:55107032-55107051 Msa1025020:CDS 40.0%
! TTGAGAGTTTTACGTCTCTC+TGG - chr7_1:55107064-55107083 Msa1025020:CDS 40.0%
GTCATTGTTTCAAGGCTATC+AGG + chr7_1:55107244-55107263 None:intergenic 40.0%
CAGTACCTAATGCTAGCTAT+TGG - chr7_1:55107376-55107395 Msa1025020:intron 40.0%
TCTTCGATCCCAATACAAAG+TGG - chr7_1:55107525-55107544 Msa1025020:intron 40.0%
! CTGATGGACCACTTTGTATT+GGG + chr7_1:55107536-55107555 None:intergenic 40.0%
! TCTGATGGACCACTTTGTAT+TGG + chr7_1:55107537-55107556 None:intergenic 40.0%
GGAGAGAATTTGGCCAAATT+AGG + chr7_1:55107633-55107652 None:intergenic 40.0%
GGAGAGAAAGAGGGAAATAT+AGG + chr7_1:55107705-55107724 None:intergenic 40.0%
CAAACTAAGTGGAGAGAAAG+AGG + chr7_1:55107715-55107734 None:intergenic 40.0%
! GTTCCATTGGTTAGTAAAGG+CGG - chr7_1:55107762-55107781 Msa1025020:intron 40.0%
ATGTGAGAGATTCACACTTG+AGG - chr7_1:55107798-55107817 Msa1025020:intron 40.0%
TGTGAGAGATTCACACTTGA+GGG - chr7_1:55107799-55107818 Msa1025020:intron 40.0%
ACACTTGAGGGGATGATTAA+TGG - chr7_1:55107811-55107830 Msa1025020:intron 40.0%
! AATGAAGCACTCTCATGCAT+CGG + chr7_1:55107936-55107955 None:intergenic 40.0%
!! TACAGGAACCTCGTCATTTT+CGG - chr7_1:55108194-55108213 Msa1025020:intron 40.0%
TGGCCCGAATACCAATATAA+AGG - chr7_1:55108271-55108290 Msa1025020:intron 40.0%
GGCCCGAATACCAATATAAA+GGG - chr7_1:55108272-55108291 Msa1025020:intron 40.0%
GCCCGAATACCAATATAAAG+GGG - chr7_1:55108273-55108292 Msa1025020:intron 40.0%
CCCCCTTTATATTGGTATTC+GGG + chr7_1:55108277-55108296 None:intergenic 40.0%
CCCGAATACCAATATAAAGG+GGG - chr7_1:55108274-55108293 Msa1025020:intron 40.0%
! GATATGCATGTTGATTGGGT+CGG - chr7_1:55108322-55108341 Msa1025020:CDS 40.0%
!! TTGGGTCGGTTTTGTCTTTT+CGG - chr7_1:55108336-55108355 Msa1025020:CDS 40.0%
GAACTTGCAGAATTTGGCAT+TGG + chr7_1:55108382-55108401 None:intergenic 40.0%
AAAGGATATGGCAGTGGAAA+AGG + chr7_1:55108412-55108431 None:intergenic 40.0%
AGATAGAAAGGATATGGCAG+TGG + chr7_1:55108418-55108437 None:intergenic 40.0%
! ATGCGCCACTTAATTTGGAA+CGG - chr7_1:55108473-55108492 Msa1025020:CDS 40.0%
TTGGAACGGAATATGGTTGA+TGG - chr7_1:55108487-55108506 Msa1025020:CDS 40.0%
! ATCGCATTTAAAGCCTACCA+AGG - chr7_1:55108577-55108596 Msa1025020:CDS 40.0%
TGACGCATCAATGTCTTTCT+TGG + chr7_1:55108638-55108657 None:intergenic 40.0%
GGAGTAAGCTATTGCTAAAG+AGG - chr7_1:55108662-55108681 Msa1025020:CDS 40.0%
! AGGAAAGGTACAGTTACAAG+AGG - chr7_1:55108682-55108701 Msa1025020:CDS 40.0%
GATCTAGCTGCTCAAGGTTT+AGG + chr7_1:55106913-55106932 None:intergenic 45.0%
CTGTAAGATCTAGCTGCTCA+AGG + chr7_1:55106919-55106938 None:intergenic 45.0%
CTTGAGCAGCTAGATCTTAC+AGG - chr7_1:55106917-55106936 Msa1025020:CDS 45.0%
TTGCAGGTGCATCCATCAAT+TGG - chr7_1:55106953-55106972 Msa1025020:CDS 45.0%
GTGATGCACTGCCAAAATCA+AGG + chr7_1:55107033-55107052 None:intergenic 45.0%
! GTGTGCATCGATCAACATCA+AGG + chr7_1:55107144-55107163 None:intergenic 45.0%
ATTGTGAAGATGACTCACGG+TGG + chr7_1:55107460-55107479 None:intergenic 45.0%
TCACATTGTCGTAAGCTTGC+AGG - chr7_1:55107498-55107517 Msa1025020:intron 45.0%
AAGTGGTCCATCAGATTCAG+CGG - chr7_1:55107542-55107561 Msa1025020:intron 45.0%
TATCTTCCCGCTGAATCTGA+TGG + chr7_1:55107552-55107571 None:intergenic 45.0%
GGATCTCATGATCACAGATC+AGG - chr7_1:55107588-55107607 Msa1025020:intron 45.0%
GTGAGAGATTCACACTTGAG+GGG - chr7_1:55107800-55107819 Msa1025020:intron 45.0%
TTCAGTCCCTTGACAGTACA+AGG + chr7_1:55107893-55107912 None:intergenic 45.0%
ATTCCTCAGACATTCCAACG+TGG - chr7_1:55108251-55108270 Msa1025020:intron 45.0%
AAGACATTGATGCGTCAGAC+TGG - chr7_1:55108641-55108660 Msa1025020:CDS 45.0%
GGTACAGTTACAAGAGGAAC+AGG - chr7_1:55108688-55108707 Msa1025020:CDS 45.0%
GATCTAGCTGCTCAAGGTTT+AGG + chr7_1:55106913-55106932 None:intergenic 45.0%
CTGTAAGATCTAGCTGCTCA+AGG + chr7_1:55106919-55106938 None:intergenic 45.0%
CTTGAGCAGCTAGATCTTAC+AGG - chr7_1:55106917-55106936 Msa1025020:CDS 45.0%
TTGCAGGTGCATCCATCAAT+TGG - chr7_1:55106953-55106972 Msa1025020:CDS 45.0%
GTGATGCACTGCCAAAATCA+AGG + chr7_1:55107033-55107052 None:intergenic 45.0%
! GTGTGCATCGATCAACATCA+AGG + chr7_1:55107144-55107163 None:intergenic 45.0%
ATTGTGAAGATGACTCACGG+TGG + chr7_1:55107460-55107479 None:intergenic 45.0%
TCACATTGTCGTAAGCTTGC+AGG - chr7_1:55107498-55107517 Msa1025020:intron 45.0%
AAGTGGTCCATCAGATTCAG+CGG - chr7_1:55107542-55107561 Msa1025020:intron 45.0%
TATCTTCCCGCTGAATCTGA+TGG + chr7_1:55107552-55107571 None:intergenic 45.0%
GGATCTCATGATCACAGATC+AGG - chr7_1:55107588-55107607 Msa1025020:intron 45.0%
GTGAGAGATTCACACTTGAG+GGG - chr7_1:55107800-55107819 Msa1025020:intron 45.0%
TTCAGTCCCTTGACAGTACA+AGG + chr7_1:55107893-55107912 None:intergenic 45.0%
ATTCCTCAGACATTCCAACG+TGG - chr7_1:55108251-55108270 Msa1025020:intron 45.0%
AAGACATTGATGCGTCAGAC+TGG - chr7_1:55108641-55108660 Msa1025020:CDS 45.0%
GGTACAGTTACAAGAGGAAC+AGG - chr7_1:55108688-55108707 Msa1025020:CDS 45.0%
TTGGCAGTGCATCACGGTTA+CGG - chr7_1:55107038-55107057 Msa1025020:CDS 50.0%
AGTGGTCCATCAGATTCAGC+GGG - chr7_1:55107543-55107562 Msa1025020:intron 50.0%
GCACCGCCTTTACTAACCAA+TGG + chr7_1:55107768-55107787 None:intergenic 50.0%
!! GAACCTCGTCATTTTCGGTG+CGG - chr7_1:55108199-55108218 Msa1025020:intron 50.0%
TATTGGTATTCGGGCCACGT+TGG + chr7_1:55108268-55108287 None:intergenic 50.0%
TTGGCAGTGCATCACGGTTA+CGG - chr7_1:55107038-55107057 Msa1025020:CDS 50.0%
AGTGGTCCATCAGATTCAGC+GGG - chr7_1:55107543-55107562 Msa1025020:intron 50.0%
GCACCGCCTTTACTAACCAA+TGG + chr7_1:55107768-55107787 None:intergenic 50.0%
!! GAACCTCGTCATTTTCGGTG+CGG - chr7_1:55108199-55108218 Msa1025020:intron 50.0%
TATTGGTATTCGGGCCACGT+TGG + chr7_1:55108268-55108287 None:intergenic 50.0%
GTGAAGATGACTCACGGTGG+AGG + chr7_1:55107457-55107476 None:intergenic 55.0%
AAGCCGCACCGAAAATGACG+AGG + chr7_1:55108205-55108224 None:intergenic 55.0%
GTGAAGATGACTCACGGTGG+AGG + chr7_1:55107457-55107476 None:intergenic 55.0%
AAGCCGCACCGAAAATGACG+AGG + chr7_1:55108205-55108224 None:intergenic 55.0%
GGGCCACGTTGGAATGTCTG+AGG + chr7_1:55108257-55108276 None:intergenic 60.0%
GGGCCACGTTGGAATGTCTG+AGG + chr7_1:55108257-55108276 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 55106830 55108735 55106830 ID=Msa1025020;Name=Msa1025020
chr7_1 mRNA 55106830 55108735 55106830 ID=Msa1025020-mRNA-1;Parent=Msa1025020;Name=Msa1025020-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|0|0|1|1|1|3|0|373
chr7_1 exon 55108279 55108735 55108279 ID=Msa1025020-mRNA-1:exon:11038;Parent=Msa1025020-mRNA-1
chr7_1 exon 55107876 55108003 55107876 ID=Msa1025020-mRNA-1:exon:11037;Parent=Msa1025020-mRNA-1
chr7_1 exon 55106830 55107366 55106830 ID=Msa1025020-mRNA-1:exon:11036;Parent=Msa1025020-mRNA-1
chr7_1 CDS 55108279 55108735 55108279 ID=Msa1025020-mRNA-1:cds;Parent=Msa1025020-mRNA-1
chr7_1 CDS 55107876 55108003 55107876 ID=Msa1025020-mRNA-1:cds;Parent=Msa1025020-mRNA-1
chr7_1 CDS 55106830 55107366 55106830 ID=Msa1025020-mRNA-1:cds;Parent=Msa1025020-mRNA-1
Gene Sequence

>Msa1025020

ATGCAGTGTCTACCCTGTTTGAAAAGGATGGATCTGAGCAACTCAAAAAATCTGAAGATGATTCCATGTTTTGATGGAATCCTAAACCTTGAGCAGCTAGATCTTACAGGATGCATAAACTTGTTGCAGGTGCATCCATCAATTGGATTTCTTTCTGAACTCGTATTCTTGAGTTTGCAGAAATTTAGTAGTCTAGTCGACCTTGATTTTGGCAGTGCATCACGGTTACGGTCTTTGAGAGTTTTACGTCTCTCTGGTTGCACAAAACTTGAAAGAACTCCAGATTTAACTGGAGCATTAAATCTTGAGTACCTTGATGTTGATCGATGCACACATTTATCTTCATTTCGTGGATCTCCTGTAAAGCTTAGAGTCTTAAGTTTGAGAGACTGCACAAATCTTGTTAGACTACCTGATAGCCTTGAAACAATGACATCTCTTATAACTTTGGATCTATCGGGAAGATATTTTAAAACAACATCTGGATCTCATGATCACAGATCAGGATTATATGTTTTCGACTATCCTAATTTGGCCAAATTCTCTCCATATCTTCAATATAGATGGCTACAAAGACATTTTAAGGAACCTCGTCATTTTCGGTGCGGCTTTGACATTGTTCTTCCTTTTTATCATCATTCCTCAGACATTCCAACGTGGCCCGAATACCAATATAAAGGGGGTTCAATAATAAGGATAAAGAACTTTGATATGCATGTTGATTGGGTCGGTTTTGTCTTTTCGGTACAATTTGAGGTAAGATACCCAATGCCAAATTCTGCAAGTTCTCAACAACCTTTTCCACTGCCATATCCTTTCTATCTTTCTTTTGAAAGGGAACACACAGAAGAACGATTTGATGCGCCACTTAATTTGGAACGGAATATGGTTGATGGCAGAAAATATATTTGGACAATTTATATCTCTCGAGAACACTGCCATTTTGTGAAAACAGAAGCACAAATCGCATTTAAAGCCTACCAAGGTTTGATTATAAGAGAGTGGGGGTTGTGCATGCTAACCAAGAAAGACATTGATGCGTCAGACTGGAGTAAGCTATTGCTAAAGAGGAAAGGTACAGTTACAAGAGGAACAGGATTACAAATTGAGGAAGTCGAATAA
Protein sequence

>Msa1025020

MQCLPCLKRMDLSNSKNLKMIPCFDGILNLEQLDLTGCINLLQVHPSIGFLSELVFLSLQKFSSLVDLDFGSASRLRSLRVLRLSGCTKLERTPDLTGALNLEYLDVDRCTHLSSFRGSPVKLRVLSLRDCTNLVRLPDSLETMTSLITLDLSGRYFKTTSGSHDHRSGLYVFDYPNLAKFSPYLQYRWLQRHFKEPRHFRCGFDIVLPFYHHSSDIPTWPEYQYKGGSIIRIKNFDMHVDWVGFVFSVQFEVRYPMPNSASSQQPFPLPYPFYLSFEREHTEERFDAPLNLERNMVDGRKYIWTIYISREHCHFVKTEAQIAFKAYQGLIIREWGLCMLTKKDIDASDWSKLLLKRKGTVTRGTGLQIEEVE*