Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1024910 | XP_027188768.1 | 67.725 | 189 | 45 | 5 | 43 | 219 | 823 | 1007 | 8.82e-73 | 249 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1024910 | A0A3Q7XNU8 | 67.725 | 189 | 45 | 5 | 43 | 219 | 823 | 1007 | 4.21e-73 | 249 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1024910 | Msa1025020 | 0.803688 | 3.092967e-49 | -8.615850e-47 |
| Msa1024910 | Msa1063640 | 0.849745 | 2.655428e-60 | -8.615850e-47 |
| Msa1024910 | Msa1108900 | 0.866069 | 3.731211e-65 | -8.615850e-47 |
| Msa1024910 | Msa1152680 | 0.812140 | 4.925754e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1024910 | MtrunA17_Chr7g0242791 | 54.749 | 179 | 56 | 4 | 43 | 196 | 5 | 183 | 1.48e-57 | 182 |
| Msa1024910 | MtrunA17_Chr5g0394041 | 56.805 | 169 | 62 | 3 | 43 | 200 | 530 | 698 | 3.66e-55 | 187 |
| Msa1024910 | MtrunA17_Chr7g0243031 | 58.333 | 156 | 57 | 3 | 43 | 196 | 434 | 583 | 1.73e-52 | 178 |
| Msa1024910 | MtrunA17_Chr7g0242741 | 57.325 | 157 | 56 | 2 | 43 | 191 | 192 | 345 | 9.53e-52 | 172 |
| Msa1024910 | MtrunA17_Chr7g0242811 | 56.954 | 151 | 61 | 3 | 43 | 190 | 917 | 1066 | 1.29e-47 | 167 |
| Msa1024910 | MtrunA17_Chr7g0242801 | 52.695 | 167 | 65 | 2 | 43 | 195 | 999 | 1165 | 2.09e-45 | 161 |
| Msa1024910 | MtrunA17_Chr2g0319851 | 53.205 | 156 | 65 | 2 | 43 | 190 | 955 | 1110 | 4.21e-45 | 160 |
| Msa1024910 | MtrunA17_Chr2g0319841 | 47.253 | 182 | 78 | 4 | 42 | 209 | 1 | 178 | 1.01e-43 | 146 |
| Msa1024910 | MtrunA17_Chr2g0319821 | 46.961 | 181 | 84 | 6 | 17 | 195 | 945 | 1115 | 2.12e-42 | 152 |
| Msa1024910 | MtrunA17_Chr2g0319811 | 52.239 | 134 | 56 | 2 | 45 | 170 | 37 | 170 | 4.02e-40 | 135 |
| Msa1024910 | MtrunA17_Chr2g0319831 | 44.444 | 180 | 78 | 6 | 44 | 220 | 25 | 185 | 7.63e-40 | 136 |
| Msa1024910 | MtrunA17_Chr2g0319921 | 48.734 | 158 | 72 | 4 | 43 | 195 | 942 | 1095 | 1.95e-39 | 144 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 43 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGATGCGCCACTTAATT+TGG | 0.151359 | 7_1:-54913766 | Msa1024910:CDS |
| ACTTAATTTGGAACGGAATA+TGG | 0.188565 | 7_1:-54913754 | Msa1024910:CDS |
| TGTTGAGAACTTGCAGAATT+TGG | 0.210118 | 7_1:+54913849 | None:intergenic |
| CTTAAGACTCTAAGCTTTAC+AGG | 0.227454 | 7_1:+54915047 | None:intergenic |
| TTGATGGCAGAAAATATATT+TGG | 0.242328 | 7_1:-54913731 | Msa1024910:CDS |
| TGACGCATCAATGTCTTTCT+TGG | 0.272218 | 7_1:+54913599 | None:intergenic |
| TCTGAGGAATGATGATAAAA+AGG | 0.283542 | 7_1:+54913996 | None:intergenic |
| TTTAAAGCTCCAGTTAAATC+TGG | 0.324653 | 7_1:+54915125 | None:intergenic |
| GAAAGAACTCCAGATTTAAC+TGG | 0.325975 | 7_1:-54915134 | None:intergenic |
| TGGCCCGAATACCAATATAA+AGG | 0.374902 | 7_1:-54913963 | Msa1024910:CDS |
| AAAGAAAGATAGAAAGGATA+TGG | 0.381720 | 7_1:+54913813 | None:intergenic |
| GGCCCGAATACCAATATAAA+GGG | 0.393070 | 7_1:-54913962 | Msa1024910:CDS |
| TTGGAACGGAATATGGTTGA+TGG | 0.424841 | 7_1:-54913747 | Msa1024910:CDS |
| ACTTTGATATGCATGTTGAT+TGG | 0.429591 | 7_1:-54913917 | Msa1024910:CDS |
| AAAGGATATGGCAGTGGAAA+AGG | 0.436584 | 7_1:+54913825 | None:intergenic |
| GGTACAGTTACAAGAGGAAC+AGG | 0.445170 | 7_1:-54913546 | Msa1024910:CDS |
| CTTTGATATGCATGTTGATT+GGG | 0.446626 | 7_1:-54913916 | Msa1024910:CDS |
| AACTTGCAGAATTTGGCATT+GGG | 0.461396 | 7_1:+54913856 | None:intergenic |
| CTTTCAAAAGAAAGATAGAA+AGG | 0.468364 | 7_1:+54913807 | None:intergenic |
| ATATTCCGTTCCAAATTAAG+TGG | 0.474436 | 7_1:+54913756 | None:intergenic |
| AAGACATTGATGCGTCAGAC+TGG | 0.484830 | 7_1:-54913593 | Msa1024910:CDS |
| GGAGTAAGCTATTGCTAAAG+AGG | 0.486591 | 7_1:-54913572 | Msa1024910:CDS |
| GAACTTGCAGAATTTGGCAT+TGG | 0.487999 | 7_1:+54913855 | None:intergenic |
| TCTTATAATCAAACCTTGGT+AGG | 0.508204 | 7_1:+54913644 | None:intergenic |
| AGATAGAAAGGATATGGCAG+TGG | 0.522745 | 7_1:+54913819 | None:intergenic |
| AGGTTTGATTATAAGAGAGT+GGG | 0.536441 | 7_1:-54913637 | Msa1024910:CDS |
| AAGGTTTGATTATAAGAGAG+TGG | 0.541445 | 7_1:-54913638 | Msa1024910:CDS |
| ACACATTTATCTTCATTTCG+TGG | 0.550488 | 7_1:-54915074 | Msa1024910:CDS |
| AGGAACAGGATTACAAATTG+AGG | 0.558506 | 7_1:-54913532 | Msa1024910:CDS |
| ATGCGCCACTTAATTTGGAA+CGG | 0.571402 | 7_1:-54913761 | Msa1024910:CDS |
| ACTCTCTTATAATCAAACCT+TGG | 0.593748 | 7_1:+54913640 | None:intergenic |
| AAGCTATTGCTAAAGAGGAA+AGG | 0.607189 | 7_1:-54913567 | Msa1024910:CDS |
| AGGAAAGGTACAGTTACAAG+AGG | 0.610459 | 7_1:-54913552 | Msa1024910:CDS |
| ATCGCATTTAAAGCCTACCA+AGG | 0.614912 | 7_1:-54913657 | Msa1024910:CDS |
| GGTTTGATTATAAGAGAGTG+GGG | 0.617044 | 7_1:-54913636 | Msa1024910:CDS |
| GTTTGATTATAAGAGAGTGG+GGG | 0.619112 | 7_1:-54913635 | Msa1024910:CDS |
| GATATGCATGTTGATTGGGT+CGG | 0.625717 | 7_1:-54913912 | Msa1024910:CDS |
| TATTGGTATTCGGGCCACGT+TGG | 0.630025 | 7_1:+54913969 | None:intergenic |
| GCCCGAATACCAATATAAAG+GGG | 0.639867 | 7_1:-54913961 | Msa1024910:CDS |
| GGGCCACGTTGGAATGTCTG+AGG | 0.645948 | 7_1:+54913980 | None:intergenic |
| CCCGAATACCAATATAAAGG+GGG | 0.685847 | 7_1:-54913960 | Msa1024910:CDS |
| AAGCCGCACCGAAAATGACG+AGG | 0.709482 | 7_1:+54914032 | None:intergenic |
| ATTCCTCAGACATTCCAACG+TGG | 0.797381 | 7_1:-54913983 | Msa1024910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGATATTTTAAAACAACATC+TGG | - | chr7_1:54913985-54914004 | Msa1024910:CDS | 20.0% |
| !! | ATTATGATCAGTTGAATAAA+GGG | + | chr7_1:54914447-54914466 | None:intergenic | 20.0% |
| !! | TATTATGATCAGTTGAATAA+AGG | + | chr7_1:54914448-54914467 | None:intergenic | 20.0% |
| !!! | TACTTGTTTTAATTTTCTTC+TGG | - | chr7_1:54914589-54914608 | Msa1024910:intron | 20.0% |
| !!! | TTTCTATCTTTCTTTTGAAA+GGG | - | chr7_1:54914847-54914866 | Msa1024910:intron | 20.0% |
| !!! | AGATATTTTAAAACAACATC+TGG | - | chr7_1:54913985-54914004 | Msa1024910:CDS | 20.0% |
| !! | ATTATGATCAGTTGAATAAA+GGG | + | chr7_1:54914447-54914466 | None:intergenic | 20.0% |
| !! | TATTATGATCAGTTGAATAA+AGG | + | chr7_1:54914448-54914467 | None:intergenic | 20.0% |
| !!! | TACTTGTTTTAATTTTCTTC+TGG | - | chr7_1:54914589-54914608 | Msa1024910:intron | 20.0% |
| !!! | TTTCTATCTTTCTTTTGAAA+GGG | - | chr7_1:54914847-54914866 | Msa1024910:intron | 20.0% |
| ! | AATGACATCTCTTATAACTT+TGG | - | chr7_1:54913676-54913695 | Msa1024910:CDS | 25.0% |
| !! | TATGGAATCTTTGATTTATC+TGG | - | chr7_1:54913747-54913766 | Msa1024910:CDS | 25.0% |
| ! | TTTAGAGAGACTAAATTTAC+AGG | - | chr7_1:54913829-54913848 | Msa1024910:CDS | 25.0% |
| ! | TTAGAGAGACTAAATTTACA+GGG | - | chr7_1:54913830-54913849 | Msa1024910:CDS | 25.0% |
| !!! | GGTATATATTTTGAAGTTCA+AGG | + | chr7_1:54914290-54914309 | None:intergenic | 25.0% |
| !! | TGCATCGGATTTAAATATTT+TGG | + | chr7_1:54914339-54914358 | None:intergenic | 25.0% |
| ! | TTATGATCAGTTGAATAAAG+GGG | + | chr7_1:54914446-54914465 | None:intergenic | 25.0% |
| !!! | TTTTAATTTTCTTCTGGTAC+AGG | - | chr7_1:54914595-54914614 | Msa1024910:intron | 25.0% |
| ! | AAAGAAAGATAGAAAGGATA+TGG | + | chr7_1:54914842-54914861 | None:intergenic | 25.0% |
| ! | CTTTCAAAAGAAAGATAGAA+AGG | + | chr7_1:54914848-54914867 | None:intergenic | 25.0% |
| !! | CTTTCTATCTTTCTTTTGAA+AGG | - | chr7_1:54914846-54914865 | Msa1024910:intron | 25.0% |
| !! | TTGATGGCAGAAAATATATT+TGG | - | chr7_1:54914921-54914940 | Msa1024910:intron | 25.0% |
| ! | AATGACATCTCTTATAACTT+TGG | - | chr7_1:54913676-54913695 | Msa1024910:CDS | 25.0% |
| !! | TATGGAATCTTTGATTTATC+TGG | - | chr7_1:54913747-54913766 | Msa1024910:CDS | 25.0% |
| ! | TTTAGAGAGACTAAATTTAC+AGG | - | chr7_1:54913829-54913848 | Msa1024910:CDS | 25.0% |
| ! | TTAGAGAGACTAAATTTACA+GGG | - | chr7_1:54913830-54913849 | Msa1024910:CDS | 25.0% |
| !!! | GGTATATATTTTGAAGTTCA+AGG | + | chr7_1:54914290-54914309 | None:intergenic | 25.0% |
| !! | TGCATCGGATTTAAATATTT+TGG | + | chr7_1:54914339-54914358 | None:intergenic | 25.0% |
| ! | TTATGATCAGTTGAATAAAG+GGG | + | chr7_1:54914446-54914465 | None:intergenic | 25.0% |
| !!! | TTTTAATTTTCTTCTGGTAC+AGG | - | chr7_1:54914595-54914614 | Msa1024910:intron | 25.0% |
| ! | AAAGAAAGATAGAAAGGATA+TGG | + | chr7_1:54914842-54914861 | None:intergenic | 25.0% |
| ! | CTTTCAAAAGAAAGATAGAA+AGG | + | chr7_1:54914848-54914867 | None:intergenic | 25.0% |
| !! | CTTTCTATCTTTCTTTTGAA+AGG | - | chr7_1:54914846-54914865 | Msa1024910:intron | 25.0% |
| !! | TTGATGGCAGAAAATATATT+TGG | - | chr7_1:54914921-54914940 | Msa1024910:intron | 25.0% |
| ! | TTTAAAGCTCCAGTTAAATC+TGG | + | chr7_1:54913530-54913549 | None:intergenic | 30.0% |
| ACACATTTATCTTCATTTCG+TGG | - | chr7_1:54913578-54913597 | Msa1024910:CDS | 30.0% | |
| TAAGAGATGTCATTGTTTCA+AGG | + | chr7_1:54913670-54913689 | None:intergenic | 30.0% | |
| CTTATAACTTTGGATCTATG+TGG | - | chr7_1:54913686-54913705 | Msa1024910:CDS | 30.0% | |
| GTACTGTAGAAATATTGCAA+AGG | + | chr7_1:54913780-54913799 | None:intergenic | 30.0% | |
| ! | TGTTTTCGACTATCCTAATT+TGG | - | chr7_1:54914035-54914054 | Msa1024910:CDS | 30.0% |
| TTGAAGATATGGAGAGAATT+TGG | + | chr7_1:54914061-54914080 | None:intergenic | 30.0% | |
| CTCCATATCTTCAATATAGA+TGG | - | chr7_1:54914067-54914086 | Msa1024910:intron | 30.0% | |
| AGCCATCTATATTGAAGATA+TGG | + | chr7_1:54914072-54914091 | None:intergenic | 30.0% | |
| ! | ATGGCTACAAAGACATTTTA+AGG | - | chr7_1:54914086-54914105 | Msa1024910:intron | 30.0% |
| AAGTAGACAAACAAACTAAG+TGG | + | chr7_1:54914144-54914163 | None:intergenic | 30.0% | |
| TCCTATTATATGAGTTCCAT+TGG | - | chr7_1:54914167-54914186 | Msa1024910:intron | 30.0% | |
| ACCAATGGAACTCATATAAT+AGG | + | chr7_1:54914171-54914190 | None:intergenic | 30.0% | |
| AAGTTCAAGGAACATTATGT+GGG | + | chr7_1:54914277-54914296 | None:intergenic | 30.0% | |
| ATATATACCTTGTACTGTCA+AGG | - | chr7_1:54914301-54914320 | Msa1024910:intron | 30.0% | |
| TATATACCTTGTACTGTCAA+GGG | - | chr7_1:54914302-54914321 | Msa1024910:intron | 30.0% | |
| AAATCGTGACATGATTATCA+AGG | + | chr7_1:54914406-54914425 | None:intergenic | 30.0% | |
| TCTGAGGAATGATGATAAAA+AGG | + | chr7_1:54914659-54914678 | None:intergenic | 30.0% | |
| TTATTGAACCCCCTTTATAT+TGG | + | chr7_1:54914703-54914722 | None:intergenic | 30.0% | |
| ATAAAGGGGGTTCAATAATA+AGG | - | chr7_1:54914705-54914724 | Msa1024910:intron | 30.0% | |
| ACTTTGATATGCATGTTGAT+TGG | - | chr7_1:54914735-54914754 | Msa1024910:intron | 30.0% | |
| ! | CTTTGATATGCATGTTGATT+GGG | - | chr7_1:54914736-54914755 | Msa1024910:intron | 30.0% |
| ATATTCCGTTCCAAATTAAG+TGG | + | chr7_1:54914899-54914918 | None:intergenic | 30.0% | |
| ! | ACTTAATTTGGAACGGAATA+TGG | - | chr7_1:54914898-54914917 | Msa1024910:intron | 30.0% |
| TCTTATAATCAAACCTTGGT+AGG | + | chr7_1:54915011-54915030 | None:intergenic | 30.0% | |
| ACTCTCTTATAATCAAACCT+TGG | + | chr7_1:54915015-54915034 | None:intergenic | 30.0% | |
| AAGGTTTGATTATAAGAGAG+TGG | - | chr7_1:54915014-54915033 | Msa1024910:intron | 30.0% | |
| AGGTTTGATTATAAGAGAGT+GGG | - | chr7_1:54915015-54915034 | Msa1024910:intron | 30.0% | |
| ! | TTTAAAGCTCCAGTTAAATC+TGG | + | chr7_1:54913530-54913549 | None:intergenic | 30.0% |
| ACACATTTATCTTCATTTCG+TGG | - | chr7_1:54913578-54913597 | Msa1024910:CDS | 30.0% | |
| TAAGAGATGTCATTGTTTCA+AGG | + | chr7_1:54913670-54913689 | None:intergenic | 30.0% | |
| CTTATAACTTTGGATCTATG+TGG | - | chr7_1:54913686-54913705 | Msa1024910:CDS | 30.0% | |
| GTACTGTAGAAATATTGCAA+AGG | + | chr7_1:54913780-54913799 | None:intergenic | 30.0% | |
| ! | TGTTTTCGACTATCCTAATT+TGG | - | chr7_1:54914035-54914054 | Msa1024910:CDS | 30.0% |
| TTGAAGATATGGAGAGAATT+TGG | + | chr7_1:54914061-54914080 | None:intergenic | 30.0% | |
| CTCCATATCTTCAATATAGA+TGG | - | chr7_1:54914067-54914086 | Msa1024910:intron | 30.0% | |
| AGCCATCTATATTGAAGATA+TGG | + | chr7_1:54914072-54914091 | None:intergenic | 30.0% | |
| ! | ATGGCTACAAAGACATTTTA+AGG | - | chr7_1:54914086-54914105 | Msa1024910:intron | 30.0% |
| AAGTAGACAAACAAACTAAG+TGG | + | chr7_1:54914144-54914163 | None:intergenic | 30.0% | |
| TCCTATTATATGAGTTCCAT+TGG | - | chr7_1:54914167-54914186 | Msa1024910:intron | 30.0% | |
| ACCAATGGAACTCATATAAT+AGG | + | chr7_1:54914171-54914190 | None:intergenic | 30.0% | |
| AAGTTCAAGGAACATTATGT+GGG | + | chr7_1:54914277-54914296 | None:intergenic | 30.0% | |
| ATATATACCTTGTACTGTCA+AGG | - | chr7_1:54914301-54914320 | Msa1024910:intron | 30.0% | |
| TATATACCTTGTACTGTCAA+GGG | - | chr7_1:54914302-54914321 | Msa1024910:intron | 30.0% | |
| AAATCGTGACATGATTATCA+AGG | + | chr7_1:54914406-54914425 | None:intergenic | 30.0% | |
| TCTGAGGAATGATGATAAAA+AGG | + | chr7_1:54914659-54914678 | None:intergenic | 30.0% | |
| TTATTGAACCCCCTTTATAT+TGG | + | chr7_1:54914703-54914722 | None:intergenic | 30.0% | |
| ATAAAGGGGGTTCAATAATA+AGG | - | chr7_1:54914705-54914724 | Msa1024910:intron | 30.0% | |
| ACTTTGATATGCATGTTGAT+TGG | - | chr7_1:54914735-54914754 | Msa1024910:intron | 30.0% | |
| ! | CTTTGATATGCATGTTGATT+GGG | - | chr7_1:54914736-54914755 | Msa1024910:intron | 30.0% |
| ATATTCCGTTCCAAATTAAG+TGG | + | chr7_1:54914899-54914918 | None:intergenic | 30.0% | |
| ! | ACTTAATTTGGAACGGAATA+TGG | - | chr7_1:54914898-54914917 | Msa1024910:intron | 30.0% |
| TCTTATAATCAAACCTTGGT+AGG | + | chr7_1:54915011-54915030 | None:intergenic | 30.0% | |
| ACTCTCTTATAATCAAACCT+TGG | + | chr7_1:54915015-54915034 | None:intergenic | 30.0% | |
| AAGGTTTGATTATAAGAGAG+TGG | - | chr7_1:54915014-54915033 | Msa1024910:intron | 30.0% | |
| AGGTTTGATTATAAGAGAGT+GGG | - | chr7_1:54915015-54915034 | Msa1024910:intron | 30.0% | |
| CTTAAGACTCTAAGCTTTAC+AGG | + | chr7_1:54913608-54913627 | None:intergenic | 35.0% | |
| TCTGCATATCAATTCAGCTA+TGG | - | chr7_1:54913729-54913748 | Msa1024910:CDS | 35.0% | |
| ATTCTCCAATAGCTAGCATT+AGG | + | chr7_1:54913802-54913821 | None:intergenic | 35.0% | |
| TGCTAGCTATTGGAGAATTA+AGG | - | chr7_1:54913804-54913823 | Msa1024910:CDS | 35.0% | |
| GCTAGCTATTGGAGAATTAA+GGG | - | chr7_1:54913805-54913824 | Msa1024910:CDS | 35.0% | |
| CTAGCTATTGGAGAATTAAG+GGG | - | chr7_1:54913806-54913825 | Msa1024910:CDS | 35.0% | |
| TAGATTGTGAAGATGACTCA+CGG | + | chr7_1:54913881-54913900 | None:intergenic | 35.0% | |
| AAACTAAGTGGAGAGAAAGA+GGG | + | chr7_1:54914132-54914151 | None:intergenic | 35.0% | |
| ! | TGAGTTCCATTGGTTAGTAA+AGG | - | chr7_1:54914177-54914196 | Msa1024910:intron | 35.0% |
| GAAGTTCAAGGAACATTATG+TGG | + | chr7_1:54914278-54914297 | None:intergenic | 35.0% | |
| ACCCCCTTTATATTGGTATT+CGG | + | chr7_1:54914696-54914715 | None:intergenic | 35.0% | |
| ! | TGTCTTTTCGGTACAATTTG+AGG | - | chr7_1:54914766-54914785 | Msa1024910:intron | 35.0% |
| AACTTGCAGAATTTGGCATT+GGG | + | chr7_1:54914799-54914818 | None:intergenic | 35.0% | |
| TGTTGAGAACTTGCAGAATT+TGG | + | chr7_1:54914806-54914825 | None:intergenic | 35.0% | |
| ATTTGATGCGCCACTTAATT+TGG | - | chr7_1:54914886-54914905 | Msa1024910:intron | 35.0% | |
| ! | GTGCTTCTGTTTTCACAAAA+TGG | + | chr7_1:54914973-54914992 | None:intergenic | 35.0% |
| GGTTTGATTATAAGAGAGTG+GGG | - | chr7_1:54915016-54915035 | Msa1024910:intron | 35.0% | |
| GTTTGATTATAAGAGAGTGG+GGG | - | chr7_1:54915017-54915036 | Msa1024910:intron | 35.0% | |
| AAGCTATTGCTAAAGAGGAA+AGG | - | chr7_1:54915085-54915104 | Msa1024910:CDS | 35.0% | |
| AGGAACAGGATTACAAATTG+AGG | - | chr7_1:54915120-54915139 | Msa1024910:CDS | 35.0% | |
| CTTAAGACTCTAAGCTTTAC+AGG | + | chr7_1:54913608-54913627 | None:intergenic | 35.0% | |
| TCTGCATATCAATTCAGCTA+TGG | - | chr7_1:54913729-54913748 | Msa1024910:CDS | 35.0% | |
| ATTCTCCAATAGCTAGCATT+AGG | + | chr7_1:54913802-54913821 | None:intergenic | 35.0% | |
| TGCTAGCTATTGGAGAATTA+AGG | - | chr7_1:54913804-54913823 | Msa1024910:CDS | 35.0% | |
| GCTAGCTATTGGAGAATTAA+GGG | - | chr7_1:54913805-54913824 | Msa1024910:CDS | 35.0% | |
| CTAGCTATTGGAGAATTAAG+GGG | - | chr7_1:54913806-54913825 | Msa1024910:CDS | 35.0% | |
| TAGATTGTGAAGATGACTCA+CGG | + | chr7_1:54913881-54913900 | None:intergenic | 35.0% | |
| AAACTAAGTGGAGAGAAAGA+GGG | + | chr7_1:54914132-54914151 | None:intergenic | 35.0% | |
| ! | TGAGTTCCATTGGTTAGTAA+AGG | - | chr7_1:54914177-54914196 | Msa1024910:intron | 35.0% |
| GAAGTTCAAGGAACATTATG+TGG | + | chr7_1:54914278-54914297 | None:intergenic | 35.0% | |
| ACCCCCTTTATATTGGTATT+CGG | + | chr7_1:54914696-54914715 | None:intergenic | 35.0% | |
| ! | TGTCTTTTCGGTACAATTTG+AGG | - | chr7_1:54914766-54914785 | Msa1024910:intron | 35.0% |
| AACTTGCAGAATTTGGCATT+GGG | + | chr7_1:54914799-54914818 | None:intergenic | 35.0% | |
| TGTTGAGAACTTGCAGAATT+TGG | + | chr7_1:54914806-54914825 | None:intergenic | 35.0% | |
| ATTTGATGCGCCACTTAATT+TGG | - | chr7_1:54914886-54914905 | Msa1024910:intron | 35.0% | |
| ! | GTGCTTCTGTTTTCACAAAA+TGG | + | chr7_1:54914973-54914992 | None:intergenic | 35.0% |
| GGTTTGATTATAAGAGAGTG+GGG | - | chr7_1:54915016-54915035 | Msa1024910:intron | 35.0% | |
| GTTTGATTATAAGAGAGTGG+GGG | - | chr7_1:54915017-54915036 | Msa1024910:intron | 35.0% | |
| AAGCTATTGCTAAAGAGGAA+AGG | - | chr7_1:54915085-54915104 | Msa1024910:CDS | 35.0% | |
| AGGAACAGGATTACAAATTG+AGG | - | chr7_1:54915120-54915139 | Msa1024910:CDS | 35.0% | |
| GTCATTGTTTCAAGGCTATC+AGG | + | chr7_1:54913662-54913681 | None:intergenic | 40.0% | |
| CAGTACCTAATGCTAGCTAT+TGG | - | chr7_1:54913794-54913813 | Msa1024910:CDS | 40.0% | |
| TCTTCGATCCCAATACAAAG+TGG | - | chr7_1:54913943-54913962 | Msa1024910:CDS | 40.0% | |
| ! | CTGATGGACCACTTTGTATT+GGG | + | chr7_1:54913954-54913973 | None:intergenic | 40.0% |
| ! | TCTGATGGACCACTTTGTAT+TGG | + | chr7_1:54913955-54913974 | None:intergenic | 40.0% |
| GGAGAGAATTTGGCCAAATT+AGG | + | chr7_1:54914051-54914070 | None:intergenic | 40.0% | |
| GGAGAGAAAGAGGGAAATAT+AGG | + | chr7_1:54914123-54914142 | None:intergenic | 40.0% | |
| CAAACTAAGTGGAGAGAAAG+AGG | + | chr7_1:54914133-54914152 | None:intergenic | 40.0% | |
| ! | GTTCCATTGGTTAGTAAAGG+CGG | - | chr7_1:54914180-54914199 | Msa1024910:intron | 40.0% |
| ATGTGAGAGATTCACACTTG+AGG | - | chr7_1:54914216-54914235 | Msa1024910:intron | 40.0% | |
| TGTGAGAGATTCACACTTGA+GGG | - | chr7_1:54914217-54914236 | Msa1024910:intron | 40.0% | |
| ACACTTGAGGGGATGATTAA+TGG | - | chr7_1:54914229-54914248 | Msa1024910:intron | 40.0% | |
| ! | AATGAAGCACTCTCATGCAT+CGG | + | chr7_1:54914354-54914373 | None:intergenic | 40.0% |
| !! | TACAGGAACCTCGTCATTTT+CGG | - | chr7_1:54914612-54914631 | Msa1024910:intron | 40.0% |
| TGGCCCGAATACCAATATAA+AGG | - | chr7_1:54914689-54914708 | Msa1024910:intron | 40.0% | |
| GGCCCGAATACCAATATAAA+GGG | - | chr7_1:54914690-54914709 | Msa1024910:intron | 40.0% | |
| GCCCGAATACCAATATAAAG+GGG | - | chr7_1:54914691-54914710 | Msa1024910:intron | 40.0% | |
| CCCCCTTTATATTGGTATTC+GGG | + | chr7_1:54914695-54914714 | None:intergenic | 40.0% | |
| CCCGAATACCAATATAAAGG+GGG | - | chr7_1:54914692-54914711 | Msa1024910:intron | 40.0% | |
| ! | GATATGCATGTTGATTGGGT+CGG | - | chr7_1:54914740-54914759 | Msa1024910:intron | 40.0% |
| !! | TTGGGTCGGTTTTGTCTTTT+CGG | - | chr7_1:54914754-54914773 | Msa1024910:intron | 40.0% |
| GAACTTGCAGAATTTGGCAT+TGG | + | chr7_1:54914800-54914819 | None:intergenic | 40.0% | |
| AAAGGATATGGCAGTGGAAA+AGG | + | chr7_1:54914830-54914849 | None:intergenic | 40.0% | |
| AGATAGAAAGGATATGGCAG+TGG | + | chr7_1:54914836-54914855 | None:intergenic | 40.0% | |
| ! | ATGCGCCACTTAATTTGGAA+CGG | - | chr7_1:54914891-54914910 | Msa1024910:intron | 40.0% |
| TTGGAACGGAATATGGTTGA+TGG | - | chr7_1:54914905-54914924 | Msa1024910:intron | 40.0% | |
| ! | ATCGCATTTAAAGCCTACCA+AGG | - | chr7_1:54914995-54915014 | Msa1024910:intron | 40.0% |
| TGACGCATCAATGTCTTTCT+TGG | + | chr7_1:54915056-54915075 | None:intergenic | 40.0% | |
| GGAGTAAGCTATTGCTAAAG+AGG | - | chr7_1:54915080-54915099 | Msa1024910:CDS | 40.0% | |
| ! | AGGAAAGGTACAGTTACAAG+AGG | - | chr7_1:54915100-54915119 | Msa1024910:CDS | 40.0% |
| GTCATTGTTTCAAGGCTATC+AGG | + | chr7_1:54913662-54913681 | None:intergenic | 40.0% | |
| CAGTACCTAATGCTAGCTAT+TGG | - | chr7_1:54913794-54913813 | Msa1024910:CDS | 40.0% | |
| TCTTCGATCCCAATACAAAG+TGG | - | chr7_1:54913943-54913962 | Msa1024910:CDS | 40.0% | |
| ! | CTGATGGACCACTTTGTATT+GGG | + | chr7_1:54913954-54913973 | None:intergenic | 40.0% |
| ! | TCTGATGGACCACTTTGTAT+TGG | + | chr7_1:54913955-54913974 | None:intergenic | 40.0% |
| GGAGAGAATTTGGCCAAATT+AGG | + | chr7_1:54914051-54914070 | None:intergenic | 40.0% | |
| GGAGAGAAAGAGGGAAATAT+AGG | + | chr7_1:54914123-54914142 | None:intergenic | 40.0% | |
| CAAACTAAGTGGAGAGAAAG+AGG | + | chr7_1:54914133-54914152 | None:intergenic | 40.0% | |
| ! | GTTCCATTGGTTAGTAAAGG+CGG | - | chr7_1:54914180-54914199 | Msa1024910:intron | 40.0% |
| ATGTGAGAGATTCACACTTG+AGG | - | chr7_1:54914216-54914235 | Msa1024910:intron | 40.0% | |
| TGTGAGAGATTCACACTTGA+GGG | - | chr7_1:54914217-54914236 | Msa1024910:intron | 40.0% | |
| ACACTTGAGGGGATGATTAA+TGG | - | chr7_1:54914229-54914248 | Msa1024910:intron | 40.0% | |
| ! | AATGAAGCACTCTCATGCAT+CGG | + | chr7_1:54914354-54914373 | None:intergenic | 40.0% |
| !! | TACAGGAACCTCGTCATTTT+CGG | - | chr7_1:54914612-54914631 | Msa1024910:intron | 40.0% |
| TGGCCCGAATACCAATATAA+AGG | - | chr7_1:54914689-54914708 | Msa1024910:intron | 40.0% | |
| GGCCCGAATACCAATATAAA+GGG | - | chr7_1:54914690-54914709 | Msa1024910:intron | 40.0% | |
| GCCCGAATACCAATATAAAG+GGG | - | chr7_1:54914691-54914710 | Msa1024910:intron | 40.0% | |
| CCCCCTTTATATTGGTATTC+GGG | + | chr7_1:54914695-54914714 | None:intergenic | 40.0% | |
| CCCGAATACCAATATAAAGG+GGG | - | chr7_1:54914692-54914711 | Msa1024910:intron | 40.0% | |
| ! | GATATGCATGTTGATTGGGT+CGG | - | chr7_1:54914740-54914759 | Msa1024910:intron | 40.0% |
| !! | TTGGGTCGGTTTTGTCTTTT+CGG | - | chr7_1:54914754-54914773 | Msa1024910:intron | 40.0% |
| GAACTTGCAGAATTTGGCAT+TGG | + | chr7_1:54914800-54914819 | None:intergenic | 40.0% | |
| AAAGGATATGGCAGTGGAAA+AGG | + | chr7_1:54914830-54914849 | None:intergenic | 40.0% | |
| AGATAGAAAGGATATGGCAG+TGG | + | chr7_1:54914836-54914855 | None:intergenic | 40.0% | |
| ! | ATGCGCCACTTAATTTGGAA+CGG | - | chr7_1:54914891-54914910 | Msa1024910:intron | 40.0% |
| TTGGAACGGAATATGGTTGA+TGG | - | chr7_1:54914905-54914924 | Msa1024910:intron | 40.0% | |
| ! | ATCGCATTTAAAGCCTACCA+AGG | - | chr7_1:54914995-54915014 | Msa1024910:intron | 40.0% |
| TGACGCATCAATGTCTTTCT+TGG | + | chr7_1:54915056-54915075 | None:intergenic | 40.0% | |
| GGAGTAAGCTATTGCTAAAG+AGG | - | chr7_1:54915080-54915099 | Msa1024910:CDS | 40.0% | |
| ! | AGGAAAGGTACAGTTACAAG+AGG | - | chr7_1:54915100-54915119 | Msa1024910:CDS | 40.0% |
| ATTGTGAAGATGACTCACGG+TGG | + | chr7_1:54913878-54913897 | None:intergenic | 45.0% | |
| TCACATTGTCGTAAGCTTGC+AGG | - | chr7_1:54913916-54913935 | Msa1024910:CDS | 45.0% | |
| AAGTGGTCCATCAGATTCAG+CGG | - | chr7_1:54913960-54913979 | Msa1024910:CDS | 45.0% | |
| TATCTTCCCGCTGAATCTGA+TGG | + | chr7_1:54913970-54913989 | None:intergenic | 45.0% | |
| GGATCTCATGATCACAGATC+AGG | - | chr7_1:54914006-54914025 | Msa1024910:CDS | 45.0% | |
| GTGAGAGATTCACACTTGAG+GGG | - | chr7_1:54914218-54914237 | Msa1024910:intron | 45.0% | |
| TTCAGTCCCTTGACAGTACA+AGG | + | chr7_1:54914311-54914330 | None:intergenic | 45.0% | |
| ATTCCTCAGACATTCCAACG+TGG | - | chr7_1:54914669-54914688 | Msa1024910:intron | 45.0% | |
| AAGACATTGATGCGTCAGAC+TGG | - | chr7_1:54915059-54915078 | Msa1024910:CDS | 45.0% | |
| GGTACAGTTACAAGAGGAAC+AGG | - | chr7_1:54915106-54915125 | Msa1024910:CDS | 45.0% | |
| ATTGTGAAGATGACTCACGG+TGG | + | chr7_1:54913878-54913897 | None:intergenic | 45.0% | |
| TCACATTGTCGTAAGCTTGC+AGG | - | chr7_1:54913916-54913935 | Msa1024910:CDS | 45.0% | |
| AAGTGGTCCATCAGATTCAG+CGG | - | chr7_1:54913960-54913979 | Msa1024910:CDS | 45.0% | |
| TATCTTCCCGCTGAATCTGA+TGG | + | chr7_1:54913970-54913989 | None:intergenic | 45.0% | |
| GGATCTCATGATCACAGATC+AGG | - | chr7_1:54914006-54914025 | Msa1024910:CDS | 45.0% | |
| GTGAGAGATTCACACTTGAG+GGG | - | chr7_1:54914218-54914237 | Msa1024910:intron | 45.0% | |
| TTCAGTCCCTTGACAGTACA+AGG | + | chr7_1:54914311-54914330 | None:intergenic | 45.0% | |
| ATTCCTCAGACATTCCAACG+TGG | - | chr7_1:54914669-54914688 | Msa1024910:intron | 45.0% | |
| AAGACATTGATGCGTCAGAC+TGG | - | chr7_1:54915059-54915078 | Msa1024910:CDS | 45.0% | |
| GGTACAGTTACAAGAGGAAC+AGG | - | chr7_1:54915106-54915125 | Msa1024910:CDS | 45.0% | |
| AGTGGTCCATCAGATTCAGC+GGG | - | chr7_1:54913961-54913980 | Msa1024910:CDS | 50.0% | |
| GCACCGCCTTTACTAACCAA+TGG | + | chr7_1:54914186-54914205 | None:intergenic | 50.0% | |
| !! | GAACCTCGTCATTTTCGGTG+CGG | - | chr7_1:54914617-54914636 | Msa1024910:intron | 50.0% |
| TATTGGTATTCGGGCCACGT+TGG | + | chr7_1:54914686-54914705 | None:intergenic | 50.0% | |
| AGTGGTCCATCAGATTCAGC+GGG | - | chr7_1:54913961-54913980 | Msa1024910:CDS | 50.0% | |
| GCACCGCCTTTACTAACCAA+TGG | + | chr7_1:54914186-54914205 | None:intergenic | 50.0% | |
| !! | GAACCTCGTCATTTTCGGTG+CGG | - | chr7_1:54914617-54914636 | Msa1024910:intron | 50.0% |
| TATTGGTATTCGGGCCACGT+TGG | + | chr7_1:54914686-54914705 | None:intergenic | 50.0% | |
| GTGAAGATGACTCACGGTGG+AGG | + | chr7_1:54913875-54913894 | None:intergenic | 55.0% | |
| AAGCCGCACCGAAAATGACG+AGG | + | chr7_1:54914623-54914642 | None:intergenic | 55.0% | |
| GTGAAGATGACTCACGGTGG+AGG | + | chr7_1:54913875-54913894 | None:intergenic | 55.0% | |
| AAGCCGCACCGAAAATGACG+AGG | + | chr7_1:54914623-54914642 | None:intergenic | 55.0% | |
| GGGCCACGTTGGAATGTCTG+AGG | + | chr7_1:54914675-54914694 | None:intergenic | 60.0% | |
| GGGCCACGTTGGAATGTCTG+AGG | + | chr7_1:54914675-54914694 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 54913524 | 54915150 | 54913524 | ID=Msa1024910;Name=Msa1024910 |
| chr7_1 | mRNA | 54913524 | 54915150 | 54913524 | ID=Msa1024910-mRNA-1;Parent=Msa1024910;Name=Msa1024910-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|0|0|1|0|0|2|0|220 |
| chr7_1 | exon | 54915025 | 54915150 | 54915025 | ID=Msa1024910-mRNA-1:exon:10977;Parent=Msa1024910-mRNA-1 |
| chr7_1 | exon | 54913524 | 54914057 | 54913524 | ID=Msa1024910-mRNA-1:exon:10976;Parent=Msa1024910-mRNA-1 |
| chr7_1 | CDS | 54915025 | 54915150 | 54915025 | ID=Msa1024910-mRNA-1:cds;Parent=Msa1024910-mRNA-1 |
| chr7_1 | CDS | 54913524 | 54914057 | 54913524 | ID=Msa1024910-mRNA-1:cds;Parent=Msa1024910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
