Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1026240 | XP_013449227.1 | 92.157 | 51 | 4 | 0 | 1 | 51 | 1 | 51 | 6.09e-22 | 100 |
| Msa1026240 | XP_013449227.1 | 93.443 | 61 | 4 | 0 | 47 | 107 | 238 | 298 | 2.19e-28 | 117 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1026240 | sp|Q9LWM4|CIPK5_ORYSJ | 76.471 | 51 | 12 | 0 | 1 | 51 | 1 | 51 | 3.87e-19 | 84.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1026240 | A0A072U0D5 | 92.157 | 51 | 4 | 0 | 1 | 51 | 1 | 51 | 2.91e-22 | 100 |
| Msa1026240 | A0A072U0D5 | 93.443 | 61 | 4 | 0 | 47 | 107 | 238 | 298 | 1.05e-28 | 117 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1026240 | Msa1065000 | 0.805447 | 1.329156e-49 | -8.615850e-47 |
| Msa1026240 | Msa1110100 | 0.841725 | 3.992236e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1026240 | MtrunA17_Chr7g0244521 | 93.443 | 61 | 4 | 0 | 47 | 107 | 238 | 298 | 2.01e-32 | 117 |
| Msa1026240 | MtrunA17_Chr7g0244521 | 92.157 | 51 | 4 | 0 | 1 | 51 | 1 | 51 | 5.60e-26 | 100 |
| Msa1026240 | MtrunA17_Chr4g0013131 | 73.333 | 60 | 16 | 0 | 48 | 107 | 239 | 298 | 5.44e-23 | 91.7 |
| Msa1026240 | MtrunA17_Chr4g0013131 | 76.471 | 51 | 12 | 0 | 1 | 51 | 1 | 51 | 1.30e-19 | 82.0 |
| Msa1026240 | MtrunA17_Chr2g0284011 | 66.667 | 51 | 17 | 0 | 1 | 51 | 1 | 51 | 1.00e-17 | 77.0 |
| Msa1026240 | MtrunA17_Chr1g0205421 | 70.833 | 48 | 14 | 0 | 1 | 48 | 1 | 48 | 5.02e-16 | 72.0 |
| Msa1026240 | MtrunA17_Chr5g0432471 | 68.750 | 48 | 15 | 0 | 1 | 48 | 1 | 48 | 1.81e-15 | 70.5 |
| Msa1026240 | MtrunA17_Chr3g0107011 | 68.085 | 47 | 15 | 0 | 4 | 50 | 6 | 52 | 2.68e-15 | 70.1 |
| Msa1026240 | MtrunA17_Chr3g0114511 | 66.000 | 50 | 17 | 0 | 1 | 50 | 21 | 70 | 7.54e-15 | 68.6 |
| Msa1026240 | MtrunA17_Chr3g0091281 | 65.306 | 49 | 17 | 0 | 1 | 49 | 1 | 49 | 1.75e-14 | 66.6 |
| Msa1026240 | MtrunA17_Chr4g0074111 | 65.116 | 43 | 15 | 0 | 6 | 48 | 12 | 54 | 2.37e-12 | 61.6 |
| Msa1026240 | MtrunA17_Chr2g0284031 | 62.791 | 43 | 16 | 0 | 6 | 48 | 25 | 67 | 3.35e-12 | 61.2 |
| Msa1026240 | MtrunA17_Chr4g0001331 | 55.769 | 52 | 21 | 1 | 6 | 55 | 14 | 65 | 5.11e-12 | 60.5 |
| Msa1026240 | MtrunA17_Chr3g0091421 | 59.184 | 49 | 20 | 0 | 1 | 49 | 1 | 49 | 1.37e-11 | 58.9 |
| Msa1026240 | MtrunA17_Chr3g0091311 | 60.000 | 50 | 20 | 0 | 1 | 50 | 1 | 50 | 1.56e-11 | 58.9 |
| Msa1026240 | MtrunA17_Chr8g0379091 | 60.465 | 43 | 17 | 0 | 6 | 48 | 20 | 62 | 3.46e-11 | 58.2 |
| Msa1026240 | MtrunA17_Chr5g0432491 | 63.415 | 41 | 15 | 0 | 8 | 48 | 19 | 59 | 3.49e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1026240 | AT5G01810.1 | 59.722 | 72 | 26 | 1 | 1 | 72 | 1 | 69 | 4.62e-19 | 80.9 |
| Msa1026240 | AT5G01810.2 | 59.722 | 72 | 26 | 1 | 1 | 72 | 1 | 69 | 4.62e-19 | 80.9 |
| Msa1026240 | AT5G01810.3 | 59.722 | 72 | 26 | 1 | 1 | 72 | 1 | 69 | 4.93e-19 | 80.5 |
| Msa1026240 | AT5G45820.1 | 72.549 | 51 | 14 | 0 | 1 | 51 | 1 | 51 | 1.63e-18 | 79.3 |
| Msa1026240 | AT5G58380.1 | 64.706 | 51 | 18 | 0 | 1 | 51 | 1 | 51 | 2.25e-15 | 70.5 |
| Msa1026240 | AT2G34180.1 | 67.391 | 46 | 15 | 0 | 3 | 48 | 48 | 93 | 2.81e-15 | 70.5 |
| Msa1026240 | AT5G07070.1 | 55.556 | 72 | 29 | 1 | 1 | 72 | 1 | 69 | 5.04e-15 | 69.7 |
| Msa1026240 | AT5G45810.1 | 72.093 | 43 | 12 | 0 | 6 | 48 | 22 | 64 | 1.71e-13 | 65.1 |
| Msa1026240 | AT4G18700.1 | 72.093 | 43 | 12 | 0 | 6 | 48 | 20 | 62 | 1.97e-13 | 65.1 |
| Msa1026240 | AT1G29230.1 | 63.043 | 46 | 17 | 0 | 3 | 48 | 65 | 110 | 2.12e-13 | 65.1 |
| Msa1026240 | AT5G25110.1 | 61.364 | 44 | 17 | 0 | 7 | 50 | 38 | 81 | 1.27e-12 | 62.8 |
| Msa1026240 | AT5G10930.1 | 60.417 | 48 | 19 | 0 | 1 | 48 | 1 | 48 | 3.16e-12 | 61.6 |
| Msa1026240 | AT1G01140.3 | 44.286 | 70 | 36 | 2 | 3 | 72 | 10 | 76 | 6.73e-11 | 57.8 |
| Msa1026240 | AT1G01140.1 | 44.286 | 70 | 36 | 2 | 3 | 72 | 10 | 76 | 7.06e-11 | 57.8 |
| Msa1026240 | AT1G01140.2 | 44.286 | 70 | 36 | 2 | 3 | 72 | 10 | 76 | 7.34e-11 | 57.8 |
Find 30 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTTATCAATTACCTTAA+TGG | 0.107100 | 7_1:-57873759 | None:intergenic |
| TAAACTTGGATCCAATATTT+TGG | 0.184405 | 7_1:-57874374 | None:intergenic |
| CCAAGATCATGGAAAATTCT+TGG | 0.236000 | 7_1:+57874416 | Msa1026240:CDS |
| TATGAGATGGGAAGATTATT+AGG | 0.308318 | 7_1:+57873677 | Msa1026240:CDS |
| TCGGTTGTTGTCCAAAATAT+TGG | 0.315875 | 7_1:+57874363 | Msa1026240:CDS |
| TGGCATGAGTGTGGCCATTA+AGG | 0.329169 | 7_1:+57873745 | Msa1026240:CDS |
| CCACACTCATGCCAGTTATA+AGG | 0.348511 | 7_1:-57873736 | None:intergenic |
| ATTAGAATCACCACCGTTCT+CGG | 0.367650 | 7_1:-57874527 | None:intergenic |
| TGCATAAGCACACTTCCCTT+TGG | 0.374709 | 7_1:-57873650 | None:intergenic |
| CATGCTAGGAACCTTATAAC+TGG | 0.431239 | 7_1:+57873725 | Msa1026240:CDS |
| AGACCTTCGCAAACGTTCCT+TGG | 0.435253 | 7_1:-57873700 | None:intergenic |
| GATATCCGAGTCTTTAAACT+TGG | 0.448127 | 7_1:-57874388 | None:intergenic |
| TAAGGTAATTGATAAAGAAA+AGG | 0.459775 | 7_1:+57873763 | Msa1026240:CDS |
| GATATCAATGGCCAAGATCA+TGG | 0.473116 | 7_1:+57874405 | Msa1026240:CDS |
| AACGAACTAACTTCTCTGAA+TGG | 0.521721 | 7_1:+57874484 | Msa1026240:CDS |
| TTTAAAGACTCGGATATCAA+TGG | 0.527783 | 7_1:+57874393 | Msa1026240:CDS |
| TGGATCCAAGTTTAAAGACT+CGG | 0.549499 | 7_1:+57874383 | Msa1026240:CDS |
| CTAACTTCTCTGAATGGTGA+TGG | 0.555497 | 7_1:+57874490 | Msa1026240:CDS |
| TTGCGAAGGTCTACCATGCT+AGG | 0.556489 | 7_1:+57873711 | Msa1026240:CDS |
| CAGTTATAAGGTTCCTAGCA+TGG | 0.572608 | 7_1:-57873724 | None:intergenic |
| TGTTACCGAAATGGAACCAA+AGG | 0.575302 | 7_1:+57873634 | None:intergenic |
| ATGGGAAGATTATTAGGCCA+AGG | 0.576127 | 7_1:+57873683 | Msa1026240:CDS |
| GGTTTGCACCAGAGGTTCGT+CGG | 0.583378 | 7_1:+57874344 | Msa1026240:intron |
| GCTTATGCAAAGATATGAGA+TGG | 0.616117 | 7_1:+57873664 | Msa1026240:CDS |
| CCTTATAACTGGCATGAGTG+TGG | 0.620897 | 7_1:+57873736 | Msa1026240:CDS |
| GTTACCGAAATGGAACCAAA+GGG | 0.622590 | 7_1:+57873635 | None:intergenic |
| AGGCCAAGGAACGTTTGCGA+AGG | 0.643449 | 7_1:+57873697 | Msa1026240:CDS |
| GTGTTTGAAGTATCCGAGAA+CGG | 0.646750 | 7_1:+57874514 | Msa1026240:CDS |
| CTTATGCAAAGATATGAGAT+GGG | 0.662118 | 7_1:+57873665 | Msa1026240:CDS |
| TTTGAAGTATCCGAGAACGG+TGG | 0.741794 | 7_1:+57874517 | Msa1026240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCTTTATCAATTACCTTAA+TGG | - | chr7_1:57873762-57873781 | None:intergenic | 20.0% |
| !! | TAAGGTAATTGATAAAGAAA+AGG | + | chr7_1:57873763-57873782 | Msa1026240:CDS | 20.0% |
| !! | AAAGAAAAGGTTTATAAAGT+TGG | + | chr7_1:57873776-57873795 | Msa1026240:intron | 20.0% |
| !! | AAATGAAAATTTGAAGGTTT+CGG | + | chr7_1:57874075-57874094 | Msa1026240:intron | 20.0% |
| !! | GAAAATTCTTGGTTTAAAAA+AGG | + | chr7_1:57874427-57874446 | Msa1026240:CDS | 20.0% |
| !! | TTCTTTATCAATTACCTTAA+TGG | - | chr7_1:57873762-57873781 | None:intergenic | 20.0% |
| !! | TAAGGTAATTGATAAAGAAA+AGG | + | chr7_1:57873763-57873782 | Msa1026240:CDS | 20.0% |
| !! | AAAGAAAAGGTTTATAAAGT+TGG | + | chr7_1:57873776-57873795 | Msa1026240:intron | 20.0% |
| !! | AAATGAAAATTTGAAGGTTT+CGG | + | chr7_1:57874075-57874094 | Msa1026240:intron | 20.0% |
| !! | GAAAATTCTTGGTTTAAAAA+AGG | + | chr7_1:57874427-57874446 | Msa1026240:CDS | 20.0% |
| !!! | AAAGGTTTATAAAGTTGGTA+TGG | + | chr7_1:57873781-57873800 | Msa1026240:intron | 25.0% |
| !! | AACCAAAATTTTCATTGTGA+TGG | + | chr7_1:57873889-57873908 | Msa1026240:intron | 25.0% |
| !! | TTCATCCAATAGTAGATTTT+CGG | - | chr7_1:57874056-57874075 | None:intergenic | 25.0% |
| ! | GGATGAAAATGAAAATTTGA+AGG | + | chr7_1:57874069-57874088 | Msa1026240:intron | 25.0% |
| ! | AGTAATCTTGTATGTTCTAT+TGG | + | chr7_1:57874240-57874259 | Msa1026240:intron | 25.0% |
| !! | TAAACTTGGATCCAATATTT+TGG | - | chr7_1:57874377-57874396 | None:intergenic | 25.0% |
| !!! | AAAGGTTTATAAAGTTGGTA+TGG | + | chr7_1:57873781-57873800 | Msa1026240:intron | 25.0% |
| !! | AACCAAAATTTTCATTGTGA+TGG | + | chr7_1:57873889-57873908 | Msa1026240:intron | 25.0% |
| !! | TTCATCCAATAGTAGATTTT+CGG | - | chr7_1:57874056-57874075 | None:intergenic | 25.0% |
| ! | GGATGAAAATGAAAATTTGA+AGG | + | chr7_1:57874069-57874088 | Msa1026240:intron | 25.0% |
| ! | AGTAATCTTGTATGTTCTAT+TGG | + | chr7_1:57874240-57874259 | Msa1026240:intron | 25.0% |
| !! | TAAACTTGGATCCAATATTT+TGG | - | chr7_1:57874377-57874396 | None:intergenic | 25.0% |
| CTTATGCAAAGATATGAGAT+GGG | + | chr7_1:57873665-57873684 | Msa1026240:CDS | 30.0% | |
| TATGAGATGGGAAGATTATT+AGG | + | chr7_1:57873677-57873696 | Msa1026240:CDS | 30.0% | |
| ! | CTCCATCACAATGAAAATTT+TGG | - | chr7_1:57873894-57873913 | None:intergenic | 30.0% |
| ! | TTTTCCACAAGATAGCAAAA+GGG | + | chr7_1:57873933-57873952 | Msa1026240:intron | 30.0% |
| ! | TCATCCAATAGTAGATTTTC+GGG | - | chr7_1:57874055-57874074 | None:intergenic | 30.0% |
| ! | AATTTGAAGGTTTCGGATTT+TGG | + | chr7_1:57874082-57874101 | Msa1026240:intron | 30.0% |
| !! | ATCAGATTTTGATCATGGAA+TGG | - | chr7_1:57874277-57874296 | None:intergenic | 30.0% |
| ATTCCATGATCAAAATCTGA+TGG | + | chr7_1:57874276-57874295 | Msa1026240:intron | 30.0% | |
| ATGGAGATGTACAAGAAAAT+CGG | + | chr7_1:57874295-57874314 | Msa1026240:intron | 30.0% | |
| ATGTACAAGAAAATCGGTAA+AGG | + | chr7_1:57874301-57874320 | Msa1026240:intron | 30.0% | |
| TGTACAAGAAAATCGGTAAA+GGG | + | chr7_1:57874302-57874321 | Msa1026240:intron | 30.0% | |
| GGGAATTCAAATTTCCTAAA+TGG | + | chr7_1:57874323-57874342 | Msa1026240:intron | 30.0% | |
| TTTAAAGACTCGGATATCAA+TGG | + | chr7_1:57874393-57874412 | Msa1026240:CDS | 30.0% | |
| !! | AGAAGTTAGTTCGTTGTTTT+CGG | - | chr7_1:57874479-57874498 | None:intergenic | 30.0% |
| CTTATGCAAAGATATGAGAT+GGG | + | chr7_1:57873665-57873684 | Msa1026240:CDS | 30.0% | |
| TATGAGATGGGAAGATTATT+AGG | + | chr7_1:57873677-57873696 | Msa1026240:CDS | 30.0% | |
| ! | CTCCATCACAATGAAAATTT+TGG | - | chr7_1:57873894-57873913 | None:intergenic | 30.0% |
| ! | TTTTCCACAAGATAGCAAAA+GGG | + | chr7_1:57873933-57873952 | Msa1026240:intron | 30.0% |
| ! | TCATCCAATAGTAGATTTTC+GGG | - | chr7_1:57874055-57874074 | None:intergenic | 30.0% |
| ! | AATTTGAAGGTTTCGGATTT+TGG | + | chr7_1:57874082-57874101 | Msa1026240:intron | 30.0% |
| !! | ATCAGATTTTGATCATGGAA+TGG | - | chr7_1:57874277-57874296 | None:intergenic | 30.0% |
| ATTCCATGATCAAAATCTGA+TGG | + | chr7_1:57874276-57874295 | Msa1026240:intron | 30.0% | |
| ATGGAGATGTACAAGAAAAT+CGG | + | chr7_1:57874295-57874314 | Msa1026240:intron | 30.0% | |
| ATGTACAAGAAAATCGGTAA+AGG | + | chr7_1:57874301-57874320 | Msa1026240:intron | 30.0% | |
| TGTACAAGAAAATCGGTAAA+GGG | + | chr7_1:57874302-57874321 | Msa1026240:intron | 30.0% | |
| GGGAATTCAAATTTCCTAAA+TGG | + | chr7_1:57874323-57874342 | Msa1026240:intron | 30.0% | |
| TTTAAAGACTCGGATATCAA+TGG | + | chr7_1:57874393-57874412 | Msa1026240:CDS | 30.0% | |
| !! | AGAAGTTAGTTCGTTGTTTT+CGG | - | chr7_1:57874479-57874498 | None:intergenic | 30.0% |
| GCTTATGCAAAGATATGAGA+TGG | + | chr7_1:57873664-57873683 | Msa1026240:CDS | 35.0% | |
| TCGTAAAGTTCAACCACATT+CGG | - | chr7_1:57873854-57873873 | None:intergenic | 35.0% | |
| ! | CTTTTCCACAAGATAGCAAA+AGG | + | chr7_1:57873932-57873951 | Msa1026240:intron | 35.0% |
| GAAACCCGAAAATCTACTAT+TGG | + | chr7_1:57874048-57874067 | Msa1026240:intron | 35.0% | |
| ATGGAAGCAAAGCTGATATA+TGG | + | chr7_1:57874209-57874228 | Msa1026240:intron | 35.0% | |
| ! | AAAGCTGATATATGGTCTTG+CGG | + | chr7_1:57874217-57874236 | Msa1026240:intron | 35.0% |
| ATCTTGTATGTTCTATTGGC+CGG | + | chr7_1:57874244-57874263 | Msa1026240:intron | 35.0% | |
| ATCATGGAATGGAAGATAAC+CGG | - | chr7_1:57874266-57874285 | None:intergenic | 35.0% | |
| !! | TCTCCATCAGATTTTGATCA+TGG | - | chr7_1:57874282-57874301 | None:intergenic | 35.0% |
| GTACAAGAAAATCGGTAAAG+GGG | + | chr7_1:57874303-57874322 | Msa1026240:intron | 35.0% | |
| TCGGTTGTTGTCCAAAATAT+TGG | + | chr7_1:57874363-57874382 | Msa1026240:CDS | 35.0% | |
| TGGATCCAAGTTTAAAGACT+CGG | + | chr7_1:57874383-57874402 | Msa1026240:CDS | 35.0% | |
| GATATCCGAGTCTTTAAACT+TGG | - | chr7_1:57874391-57874410 | None:intergenic | 35.0% | |
| ! | CCAAGAATTTTCCATGATCT+TGG | - | chr7_1:57874419-57874438 | None:intergenic | 35.0% |
| CCAAGATCATGGAAAATTCT+TGG | + | chr7_1:57874416-57874435 | Msa1026240:CDS | 35.0% | |
| AACGAACTAACTTCTCTGAA+TGG | + | chr7_1:57874484-57874503 | Msa1026240:CDS | 35.0% | |
| GCTTATGCAAAGATATGAGA+TGG | + | chr7_1:57873664-57873683 | Msa1026240:CDS | 35.0% | |
| TCGTAAAGTTCAACCACATT+CGG | - | chr7_1:57873854-57873873 | None:intergenic | 35.0% | |
| ! | CTTTTCCACAAGATAGCAAA+AGG | + | chr7_1:57873932-57873951 | Msa1026240:intron | 35.0% |
| GAAACCCGAAAATCTACTAT+TGG | + | chr7_1:57874048-57874067 | Msa1026240:intron | 35.0% | |
| ATGGAAGCAAAGCTGATATA+TGG | + | chr7_1:57874209-57874228 | Msa1026240:intron | 35.0% | |
| ! | AAAGCTGATATATGGTCTTG+CGG | + | chr7_1:57874217-57874236 | Msa1026240:intron | 35.0% |
| ATCTTGTATGTTCTATTGGC+CGG | + | chr7_1:57874244-57874263 | Msa1026240:intron | 35.0% | |
| ATCATGGAATGGAAGATAAC+CGG | - | chr7_1:57874266-57874285 | None:intergenic | 35.0% | |
| !! | TCTCCATCAGATTTTGATCA+TGG | - | chr7_1:57874282-57874301 | None:intergenic | 35.0% |
| GTACAAGAAAATCGGTAAAG+GGG | + | chr7_1:57874303-57874322 | Msa1026240:intron | 35.0% | |
| TCGGTTGTTGTCCAAAATAT+TGG | + | chr7_1:57874363-57874382 | Msa1026240:CDS | 35.0% | |
| TGGATCCAAGTTTAAAGACT+CGG | + | chr7_1:57874383-57874402 | Msa1026240:CDS | 35.0% | |
| GATATCCGAGTCTTTAAACT+TGG | - | chr7_1:57874391-57874410 | None:intergenic | 35.0% | |
| ! | CCAAGAATTTTCCATGATCT+TGG | - | chr7_1:57874419-57874438 | None:intergenic | 35.0% |
| CCAAGATCATGGAAAATTCT+TGG | + | chr7_1:57874416-57874435 | Msa1026240:CDS | 35.0% | |
| AACGAACTAACTTCTCTGAA+TGG | + | chr7_1:57874484-57874503 | Msa1026240:CDS | 35.0% | |
| ATGGGAAGATTATTAGGCCA+AGG | + | chr7_1:57873683-57873702 | Msa1026240:CDS | 40.0% | |
| CAGTTATAAGGTTCCTAGCA+TGG | - | chr7_1:57873727-57873746 | None:intergenic | 40.0% | |
| CATGCTAGGAACCTTATAAC+TGG | + | chr7_1:57873725-57873744 | Msa1026240:CDS | 40.0% | |
| CGTAAAGTTCAACCACATTC+GGG | - | chr7_1:57873853-57873872 | None:intergenic | 40.0% | |
| GAATGTGGTTGAACTTTACG+AGG | + | chr7_1:57873853-57873872 | Msa1026240:intron | 40.0% | |
| ! | ATTGTGATGGAGTATGCAAG+AGG | + | chr7_1:57873902-57873921 | Msa1026240:intron | 40.0% |
| TCTGAATCTAAGAGCCAAGA+TGG | + | chr7_1:57874118-57874137 | Msa1026240:intron | 40.0% | |
| TAGTGTGGAGTAATCCATCT+TGG | - | chr7_1:57874135-57874154 | None:intergenic | 40.0% | |
| ATAAACCGAAAGGGTTACGA+TGG | + | chr7_1:57874190-57874209 | Msa1026240:intron | 40.0% | |
| GATATCAATGGCCAAGATCA+TGG | + | chr7_1:57874405-57874424 | Msa1026240:CDS | 40.0% | |
| CTAACTTCTCTGAATGGTGA+TGG | + | chr7_1:57874490-57874509 | Msa1026240:CDS | 40.0% | |
| ! | GTGTTTGAAGTATCCGAGAA+CGG | + | chr7_1:57874514-57874533 | Msa1026240:CDS | 40.0% |
| ATGGGAAGATTATTAGGCCA+AGG | + | chr7_1:57873683-57873702 | Msa1026240:CDS | 40.0% | |
| CAGTTATAAGGTTCCTAGCA+TGG | - | chr7_1:57873727-57873746 | None:intergenic | 40.0% | |
| CATGCTAGGAACCTTATAAC+TGG | + | chr7_1:57873725-57873744 | Msa1026240:CDS | 40.0% | |
| CGTAAAGTTCAACCACATTC+GGG | - | chr7_1:57873853-57873872 | None:intergenic | 40.0% | |
| GAATGTGGTTGAACTTTACG+AGG | + | chr7_1:57873853-57873872 | Msa1026240:intron | 40.0% | |
| ! | ATTGTGATGGAGTATGCAAG+AGG | + | chr7_1:57873902-57873921 | Msa1026240:intron | 40.0% |
| TCTGAATCTAAGAGCCAAGA+TGG | + | chr7_1:57874118-57874137 | Msa1026240:intron | 40.0% | |
| TAGTGTGGAGTAATCCATCT+TGG | - | chr7_1:57874135-57874154 | None:intergenic | 40.0% | |
| ATAAACCGAAAGGGTTACGA+TGG | + | chr7_1:57874190-57874209 | Msa1026240:intron | 40.0% | |
| GATATCAATGGCCAAGATCA+TGG | + | chr7_1:57874405-57874424 | Msa1026240:CDS | 40.0% | |
| CTAACTTCTCTGAATGGTGA+TGG | + | chr7_1:57874490-57874509 | Msa1026240:CDS | 40.0% | |
| ! | GTGTTTGAAGTATCCGAGAA+CGG | + | chr7_1:57874514-57874533 | Msa1026240:CDS | 40.0% |
| TGCATAAGCACACTTCCCTT+TGG | - | chr7_1:57873653-57873672 | None:intergenic | 45.0% | |
| CCACACTCATGCCAGTTATA+AGG | - | chr7_1:57873739-57873758 | None:intergenic | 45.0% | |
| CCTTATAACTGGCATGAGTG+TGG | + | chr7_1:57873736-57873755 | Msa1026240:CDS | 45.0% | |
| ATTAGTCAGACACCCGAATG+TGG | + | chr7_1:57873838-57873857 | Msa1026240:intron | 45.0% | |
| GGTTGAACTTTACGAGGTGA+TGG | + | chr7_1:57873859-57873878 | Msa1026240:intron | 45.0% | |
| !! | GCTTCCCTTTTGCTATCTTG+TGG | - | chr7_1:57873940-57873959 | None:intergenic | 45.0% |
| AGCAAAAGGGAAGCTCAAGA+CGG | + | chr7_1:57873946-57873965 | Msa1026240:intron | 45.0% | |
| TAGGAGATATTTCCAGCAGC+TGG | + | chr7_1:57873976-57873995 | Msa1026240:intron | 45.0% | |
| GGATTACTCCACACTACATG+TGG | + | chr7_1:57874139-57874158 | Msa1026240:intron | 45.0% | |
| TCCGGAAGTGATAAACCGAA+AGG | + | chr7_1:57874180-57874199 | Msa1026240:intron | 45.0% | |
| CCCTTTCGGTTTATCACTTC+CGG | - | chr7_1:57874184-57874203 | None:intergenic | 45.0% | |
| CCGGAAGTGATAAACCGAAA+GGG | + | chr7_1:57874181-57874200 | Msa1026240:intron | 45.0% | |
| TGCTTCCATCGTAACCCTTT+CGG | - | chr7_1:57874198-57874217 | None:intergenic | 45.0% | |
| ! | TCCTAAATGGTTTGCACCAG+AGG | + | chr7_1:57874336-57874355 | Msa1026240:intron | 45.0% |
| ACCTCTGGTGCAAACCATTT+AGG | - | chr7_1:57874340-57874359 | None:intergenic | 45.0% | |
| ! | TTTTCGGTCTCGATGACAAC+AGG | - | chr7_1:57874463-57874482 | None:intergenic | 45.0% |
| TGCATAAGCACACTTCCCTT+TGG | - | chr7_1:57873653-57873672 | None:intergenic | 45.0% | |
| CCACACTCATGCCAGTTATA+AGG | - | chr7_1:57873739-57873758 | None:intergenic | 45.0% | |
| CCTTATAACTGGCATGAGTG+TGG | + | chr7_1:57873736-57873755 | Msa1026240:CDS | 45.0% | |
| ATTAGTCAGACACCCGAATG+TGG | + | chr7_1:57873838-57873857 | Msa1026240:intron | 45.0% | |
| GGTTGAACTTTACGAGGTGA+TGG | + | chr7_1:57873859-57873878 | Msa1026240:intron | 45.0% | |
| !! | GCTTCCCTTTTGCTATCTTG+TGG | - | chr7_1:57873940-57873959 | None:intergenic | 45.0% |
| AGCAAAAGGGAAGCTCAAGA+CGG | + | chr7_1:57873946-57873965 | Msa1026240:intron | 45.0% | |
| TAGGAGATATTTCCAGCAGC+TGG | + | chr7_1:57873976-57873995 | Msa1026240:intron | 45.0% | |
| GGATTACTCCACACTACATG+TGG | + | chr7_1:57874139-57874158 | Msa1026240:intron | 45.0% | |
| TCCGGAAGTGATAAACCGAA+AGG | + | chr7_1:57874180-57874199 | Msa1026240:intron | 45.0% | |
| CCCTTTCGGTTTATCACTTC+CGG | - | chr7_1:57874184-57874203 | None:intergenic | 45.0% | |
| CCGGAAGTGATAAACCGAAA+GGG | + | chr7_1:57874181-57874200 | Msa1026240:intron | 45.0% | |
| TGCTTCCATCGTAACCCTTT+CGG | - | chr7_1:57874198-57874217 | None:intergenic | 45.0% | |
| ! | TCCTAAATGGTTTGCACCAG+AGG | + | chr7_1:57874336-57874355 | Msa1026240:intron | 45.0% |
| ACCTCTGGTGCAAACCATTT+AGG | - | chr7_1:57874340-57874359 | None:intergenic | 45.0% | |
| ! | TTTTCGGTCTCGATGACAAC+AGG | - | chr7_1:57874463-57874482 | None:intergenic | 45.0% |
| AGACCTTCGCAAACGTTCCT+TGG | - | chr7_1:57873703-57873722 | None:intergenic | 50.0% | |
| TTGCGAAGGTCTACCATGCT+AGG | + | chr7_1:57873711-57873730 | Msa1026240:CDS | 50.0% | |
| TGGCATGAGTGTGGCCATTA+AGG | + | chr7_1:57873745-57873764 | Msa1026240:CDS | 50.0% | |
| ! | GTGATGGAGTATGCAAGAGG+TGG | + | chr7_1:57873905-57873924 | Msa1026240:intron | 50.0% |
| AGCTCAAGACGGATGTTGCT+AGG | + | chr7_1:57873957-57873976 | Msa1026240:intron | 50.0% | |
| AGTTGACTACTGCCACAGCA+GGG | + | chr7_1:57874006-57874025 | Msa1026240:intron | 50.0% | |
| AGACCTTCGCAAACGTTCCT+TGG | - | chr7_1:57873703-57873722 | None:intergenic | 50.0% | |
| TTGCGAAGGTCTACCATGCT+AGG | + | chr7_1:57873711-57873730 | Msa1026240:CDS | 50.0% | |
| TGGCATGAGTGTGGCCATTA+AGG | + | chr7_1:57873745-57873764 | Msa1026240:CDS | 50.0% | |
| ! | GTGATGGAGTATGCAAGAGG+TGG | + | chr7_1:57873905-57873924 | Msa1026240:intron | 50.0% |
| AGCTCAAGACGGATGTTGCT+AGG | + | chr7_1:57873957-57873976 | Msa1026240:intron | 50.0% | |
| AGTTGACTACTGCCACAGCA+GGG | + | chr7_1:57874006-57874025 | Msa1026240:intron | 50.0% | |
| AGGCCAAGGAACGTTTGCGA+AGG | + | chr7_1:57873697-57873716 | Msa1026240:CDS | 55.0% | |
| CAGTTGACTACTGCCACAGC+AGG | + | chr7_1:57874005-57874024 | Msa1026240:intron | 55.0% | |
| GTTGACTACTGCCACAGCAG+GGG | + | chr7_1:57874007-57874026 | Msa1026240:intron | 55.0% | |
| GATGATACACACCCCTGCTG+TGG | - | chr7_1:57874021-57874040 | None:intergenic | 55.0% | |
| CAGGCGTACCACATGTAGTG+TGG | - | chr7_1:57874150-57874169 | None:intergenic | 55.0% | |
| TACGCCTGCGTATGTTGCTC+CGG | + | chr7_1:57874162-57874181 | Msa1026240:intron | 55.0% | |
| ACTTCCGGAGCAACATACGC+AGG | - | chr7_1:57874169-57874188 | None:intergenic | 55.0% | |
| GGTTTGCACCAGAGGTTCGT+CGG | + | chr7_1:57874344-57874363 | Msa1026240:intron | 55.0% | |
| GACAACAACCGACGAACCTC+TGG | - | chr7_1:57874355-57874374 | None:intergenic | 55.0% | |
| AGGCCAAGGAACGTTTGCGA+AGG | + | chr7_1:57873697-57873716 | Msa1026240:CDS | 55.0% | |
| CAGTTGACTACTGCCACAGC+AGG | + | chr7_1:57874005-57874024 | Msa1026240:intron | 55.0% | |
| GTTGACTACTGCCACAGCAG+GGG | + | chr7_1:57874007-57874026 | Msa1026240:intron | 55.0% | |
| GATGATACACACCCCTGCTG+TGG | - | chr7_1:57874021-57874040 | None:intergenic | 55.0% | |
| CAGGCGTACCACATGTAGTG+TGG | - | chr7_1:57874150-57874169 | None:intergenic | 55.0% | |
| TACGCCTGCGTATGTTGCTC+CGG | + | chr7_1:57874162-57874181 | Msa1026240:intron | 55.0% | |
| ACTTCCGGAGCAACATACGC+AGG | - | chr7_1:57874169-57874188 | None:intergenic | 55.0% | |
| GGTTTGCACCAGAGGTTCGT+CGG | + | chr7_1:57874344-57874363 | Msa1026240:intron | 55.0% | |
| GACAACAACCGACGAACCTC+TGG | - | chr7_1:57874355-57874374 | None:intergenic | 55.0% | |
| CAACTGCGCTAACCAGCTGC+TGG | - | chr7_1:57873991-57874010 | None:intergenic | 60.0% | |
| CAACTGCGCTAACCAGCTGC+TGG | - | chr7_1:57873991-57874010 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 57873644 | 57874537 | 57873644 | ID=Msa1026240;Name=Msa1026240 |
| chr7_1 | mRNA | 57873644 | 57874537 | 57873644 | ID=Msa1026240-mRNA-1;Parent=Msa1026240;Name=Msa1026240-mRNA-1;_AED=0.41;_eAED=0.41;_QI=0|0|0|1|0|0|2|0|107 |
| chr7_1 | exon | 57873644 | 57873784 | 57873644 | ID=Msa1026240-mRNA-1:exon:11584;Parent=Msa1026240-mRNA-1 |
| chr7_1 | exon | 57874358 | 57874537 | 57874358 | ID=Msa1026240-mRNA-1:exon:11585;Parent=Msa1026240-mRNA-1 |
| chr7_1 | CDS | 57873644 | 57873784 | 57873644 | ID=Msa1026240-mRNA-1:cds;Parent=Msa1026240-mRNA-1 |
| chr7_1 | CDS | 57874358 | 57874537 | 57874358 | ID=Msa1026240-mRNA-1:cds;Parent=Msa1026240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
