AlfalfaGEDB | Msa1110100

M. sativa cultivar zhongmu-4 / Msa1110100

KEGG: K07198
GO: GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010646 GO:0010648 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023051 GO:0023052 GO:0023057 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1901701 GO:1905957 GO:1905958
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1110100	XP_013449227.1	97.289	332	9	0	1	332	1	332	0.0	674

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1110100	sp\|Q9LWM4\|CIPK5_ORYSJ	62.105	380	135	6	1	378	1	373	3.21e-169	484

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1110100	A0A072U0D5	97.289	332	9	0	1	332	1	332	0.0	674

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1026240	Msa1110100	0.841725	3.992236e-58	-8.615850e-47
Msa1065000	Msa1110100	0.849257	3.631954e-60	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1110100	MtrunA17_Chr7g0244521	97.289	332	9	0	1	332	1	332	0.0	674
Msa1110100	MtrunA17_Chr4g0013131	79.217	332	63	1	1	332	1	326	0.0	549
Msa1110100	MtrunA17_Chr2g0284011	65.000	340	103	4	1	332	1	332	9.74e-161	459
Msa1110100	MtrunA17_Chr5g0432471	62.857	350	112	2	1	332	1	350	3.96e-156	449
Msa1110100	MtrunA17_Chr2g0284031	61.383	347	110	5	6	332	25	367	7.86e-152	439
Msa1110100	MtrunA17_Chr3g0107011	63.855	332	111	4	4	331	6	332	4.28e-149	431
Msa1110100	MtrunA17_Chr8g0379091	60.684	351	114	7	6	332	20	370	3.53e-146	425
Msa1110100	MtrunA17_Chr4g0001331	59.327	327	131	2	6	330	14	340	1.20e-137	401
Msa1110100	MtrunA17_Chr1g0150321	62.048	332	107	4	2	332	3	316	1.37e-134	392
Msa1110100	MtrunA17_Chr5g0441011	57.576	330	132	4	2	330	3	325	6.31e-132	386

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1110100	AT5G58380.1	58.413	416	142	7	1	393	1	408	2.72e-166	475
Msa1110100	AT5G45820.1	68.437	339	80	6	1	332	1	319	3.56e-164	468
Msa1110100	AT5G01810.1	67.169	332	97	1	1	332	1	320	3.84e-164	468
Msa1110100	AT5G01810.2	67.169	332	97	1	1	332	1	320	3.84e-164	468
Msa1110100	AT5G01810.3	74.908	271	68	0	1	271	1	271	2.27e-154	441
Msa1110100	AT5G07070.1	65.964	332	111	1	1	332	1	330	6.04e-151	435
Msa1110100	AT4G18700.1	61.176	340	117	3	6	332	20	357	1.09e-149	433
Msa1110100	AT5G45810.1	59.412	340	125	2	6	332	22	361	2.26e-145	422
Msa1110100	AT5G10930.1	56.349	378	152	5	1	376	1	367	7.66e-141	409
Msa1110100	AT4G30960.1	63.526	329	99	3	7	331	19	330	4.22e-140	407

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Find 103 sgRNAs with CRISPR-Local

Find 370 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAAAGGTTTATAAAGT+TGG	0.361192	7_3:+54699358	Msa1110100:CDS
AAAGCTGATATATGGTCGTG+CGG	0.674204	7_3:+54699799	Msa1110100:CDS
AAAGGTTTATAAAGTTGGTA+TGG	0.461419	7_3:+54699363	Msa1110100:CDS
AACCAGAGCAAAGCTTTGTA+TGG	0.439943	7_3:+54701086	Msa1110100:CDS
AACGAACTAACTTCTCTGAA+TGG	0.521721	7_3:+54700066	Msa1110100:CDS
AAGGCGTTTAAGTTGTTGCA+AGG	0.566615	7_3:-54700159	None:intergenic
AAGTGCTGAATCTTGAAAGA+GGG	0.628277	7_3:-54701574	None:intergenic
AATTTGAAGGTTTCAGATTT+TGG	0.147013	7_3:+54699664	Msa1110100:CDS
ACAATGTGTTATGATCCAGG+AGG	0.803772	7_3:+54701142	Msa1110100:CDS
ACCTCTGGTGCAAACCATTT+AGG	0.298161	7_3:-54699919	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTTATGCAAAGATATGAGAT+GGG	+	chr7_3:54699247-54699266	Msa1110100:CDS	30.0%
TATGAGATGGGAAGATTATT+AGG	+	chr7_3:54699259-54699278	Msa1110100:CDS	30.0%
ATTCCATGATCAAAATCTGA+TGG	+	chr7_3:54699858-54699877	Msa1110100:CDS	30.0%
ATGGAGATGTACAAGAAAAT+CGG	+	chr7_3:54699877-54699896	Msa1110100:CDS	30.0%
ATGTACAAGAAAATCGGTAA+AGG	+	chr7_3:54699883-54699902	Msa1110100:CDS	30.0%
TGTACAAGAAAATCGGTAAA+GGG	+	chr7_3:54699884-54699903	Msa1110100:CDS	30.0%
GGGAATTCAAATTTCCTAAA+TGG	+	chr7_3:54699905-54699924	Msa1110100:CDS	30.0%
TTTAAAGACTCGGATATCTA+TGG	+	chr7_3:54699975-54699994	Msa1110100:CDS	30.0%
CAATTCAAAAGAAAGAGATG+CGG	+	chr7_3:54700235-54700254	Msa1110100:intron	30.0%
TGTGTAACTGACTAATTGTA+AGG	+	chr7_3:54700733-54700752	Msa1110100:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	54699226	54701626	54699226	ID=Msa1110100;Name=Msa1110100
chr7_3	mRNA	54699226	54701626	54699226	ID=Msa1110100-mRNA-1;Parent=Msa1110100;Name=Msa1110100-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0\|0\|0\|0.33\|1\|1\|3\|0\|406
chr7_3	exon	54699226	54700219	54699226	ID=Msa1110100-mRNA-1:exon:11535;Parent=Msa1110100-mRNA-1
chr7_3	exon	54701075	54701163	54701075	ID=Msa1110100-mRNA-1:exon:11536;Parent=Msa1110100-mRNA-1
chr7_3	exon	54701489	54701626	54701489	ID=Msa1110100-mRNA-1:exon:11537;Parent=Msa1110100-mRNA-1
chr7_3	CDS	54699226	54700219	54699226	ID=Msa1110100-mRNA-1:cds;Parent=Msa1110100-mRNA-1
chr7_3	CDS	54701075	54701163	54701075	ID=Msa1110100-mRNA-1:cds;Parent=Msa1110100-mRNA-1
chr7_3	CDS	54701489	54701626	54701489	ID=Msa1110100-mRNA-1:cds;Parent=Msa1110100-mRNA-1

Gene Sequence

>Msa1110100

ATGGAACCAAAGGGAAGTGTGCTTATGCAAAGATATGAGATGGGAAGATTATTAGGCCAAGGAACGTTTGCGAAGGTCTACCATGCTAGGAACCTTGTAACTGGCATGAGTGTGGCCATTAAGGTAATTGATAAAGAAAAGGTTTATAAAGTTGGTATGGTTGATCAAATTAAGCGTGAAATTTCAGTTATGAGATTAGTCAGACACCCGAATGTGGTTGAGCTTTACGAGGTAATGGCTAGTAAAACCAAAATTTTCATTGTCATGGAGTATGCAAGAGGCGGTGAGCTTTTCCACAAGATAGCAAAAGGGAAGCTCAAGACGGATGTTGCTAGGAGATATTTCCAGCAGCTGGTTAGCGCAGTTGACTACTGCCACAGCAGGGGTGTGTATCATCGAGATTTGAAACCCGAAAATCTACTACTGGATGAAAATGAAAATTTGAAGGTTTCAGATTTTGGTTTGAGTACTCTTTCTGAATCTAAGAGCCAAGATGGATTACTCCACACTACATGTGGTACGCCTGCATATGTTGCTCCTGAAGTGATAAACAGAAAGGGTTACGATGGGAGCAAAGCTGATATATGGTCGTGCGGAGTAATCTTGTATGTTCTATTGGCCGGTTATCTTCCATTCCATGATCAAAATCTGATGGAGATGTACAAGAAAATCGGTAAAGGGGAATTCAAATTTCCTAAATGGTTTGCACCAGAGGTTCGCCGGTTGTTGTCCAAAATATTGGATCCAAGTTTAAAGACTCGGATATCTATGGCCAAGATCATGGAAAATTCTTGGTTTAAAAAAGGATTAGAGAAGCCTGTTGTCATCGAGACCGAAAACAACGAACTAACTTCTCTGAATGGTGATGGAGTGTTTGAAGTATCCGAGAACGGTGGTGATTCTAATACGGAGACAAAACAACAACAGGCGAAGCCTTGCAACAACTTAAACGCCTTTGATATCATCTCCTTCTCATCTGGTTTTGATCTATCCGGTCCCATTCTAAACCAGAGCAAAGCTTTGTATGGACTTGCCCACCGAAGTTGGCACCAGGAGCCTACACAATGTGTTATGATCCAGGAGGCAATTGCTTCTCTGAACTCTGGACTATCATTCTACGTTATGCGCCCAGACACACAACACAAGTGCATTTTCCGGAGTCAGATTTCCCTCTTTCAAGATTCAGCACTTGCATCATTGTGGTGCAAGGAGCTATGGTGA

Protein sequence

>Msa1110100

MEPKGSVLMQRYEMGRLLGQGTFAKVYHARNLVTGMSVAIKVIDKEKVYKVGMVDQIKREISVMRLVRHPNVVELYEVMASKTKIFIVMEYARGGELFHKIAKGKLKTDVARRYFQQLVSAVDYCHSRGVYHRDLKPENLLLDENENLKVSDFGLSTLSESKSQDGLLHTTCGTPAYVAPEVINRKGYDGSKADIWSCGVILYVLLAGYLPFHDQNLMEMYKKIGKGEFKFPKWFAPEVRRLLSKILDPSLKTRISMAKIMENSWFKKGLEKPVVIETENNELTSLNGDGVFEVSENGGDSNTETKQQQAKPCNNLNAFDIISFSSGFDLSGPILNQSKALYGLAHRSWHQEPTQCVMIQEAIASLNSGLSFYVMRPDTQHKCIFRSQISLFQDSALASLWCKELW*