AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1026870

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1026870 MtrunA17_Chr7g0245201 97.876 612 13 0 1 612 29 640 0.0 1243
Msa1026870 MtrunA17_Chr4g0010091 50.777 579 244 11 25 581 26 585 0.0 547
Msa1026870 MtrunA17_Chr1g0195911 44.868 604 295 10 31 612 34 621 1.62e-168 494
Msa1026870 MtrunA17_Chr7g0268781 44.649 598 286 12 31 597 34 617 1.60e-163 481
Msa1026870 MtrunA17_Chr5g0401451 41.857 614 309 16 29 612 35 630 7.85e-145 433
Msa1026870 MtrunA17_Chr4g0053841 41.259 572 302 13 32 581 12 571 3.74e-136 410
Msa1026870 MtrunA17_Chr2g0303541 38.798 549 299 10 36 555 29 569 9.78e-121 372
Msa1026870 MtrunA17_Chr3g0108331 35.750 593 322 11 32 612 23 568 5.30e-115 354
Msa1026870 MtrunA17_Chr2g0285511 37.868 544 292 12 33 549 26 550 8.49e-114 352
Msa1026870 MtrunA17_Chr8g0374011 33.675 683 346 17 7 609 1 656 4.48e-112 350
Msa1026870 MtrunA17_Chr2g0320691 34.032 620 354 14 30 600 18 631 2.71e-111 347
Msa1026870 MtrunA17_Chr4g0050021 34.662 577 313 12 29 549 40 608 6.62e-110 344
Msa1026870 MtrunA17_Chr5g0432861 33.833 600 341 13 29 612 20 579 3.71e-106 332
Msa1026870 MtrunA17_Chr2g0279481 33.828 606 328 15 7 549 19 614 1.92e-104 330
Msa1026870 MtrunA17_Chr1g0181181 37.975 474 269 9 33 495 26 485 3.39e-104 326
Msa1026870 MtrunA17_Chr8g0382231 35.824 522 279 10 2 494 22 516 2.95e-100 318
Msa1026870 MtrunA17_Chr1g0199631 35.560 554 308 15 51 576 8 540 5.57e-98 310
Msa1026870 MtrunA17_Chr5g0401341 37.344 482 260 14 29 489 23 483 3.45e-90 291
Msa1026870 MtrunA17_Chr5g0412591 37.725 501 239 10 29 489 22 489 4.13e-90 291
Msa1026870 MtrunA17_Chr1g0150191 33.729 590 336 15 25 587 19 580 1.66e-89 290
Msa1026870 MtrunA17_Chr8g0367891 35.271 516 281 12 36 525 29 517 6.32e-87 282
Msa1026870 MtrunA17_Chr1g0207461 33.211 545 321 12 23 540 18 546 1.34e-85 279
Msa1026870 MtrunA17_Chr1g0191711 32.974 464 270 10 31 490 56 482 2.65e-78 258
Msa1026870 MtrunA17_Chr4g0076521 32.632 475 297 10 21 487 14 473 1.44e-74 249
Msa1026870 MtrunA17_Chr2g0290741 32.025 484 289 12 16 487 8 463 1.06e-65 225
Msa1026870 MtrunA17_Chr4g0003891 33.741 409 231 9 203 601 44 422 1.66e-60 208
Msa1026870 MtrunA17_Chr2g0332281 36.842 380 214 9 208 580 24 384 5.94e-59 203
Msa1026870 MtrunA17_Chr4g0023801 29.545 572 333 21 36 573 7 542 1.19e-53 192
Msa1026870 MtrunA17_Chr1g0206621 47.059 136 69 3 43 176 77 211 7.48e-33 126
Msa1026870 MtrunA17_Chr1g0163311 27.933 358 201 10 206 554 208 517 8.53e-31 126
Msa1026870 MtrunA17_Chr1g0163311 34.783 115 69 2 42 155 13 122 5.69e-12 68.6
Msa1026870 MtrunA17_Chr4g0037661 28.409 352 209 9 206 551 208 522 1.07e-30 126
Msa1026870 MtrunA17_Chr4g0037661 31.746 126 82 3 36 157 6 131 8.89e-12 67.8
Msa1026870 MtrunA17_Chr2g0280541 28.212 397 223 10 101 475 2 358 5.11e-28 117
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1026870 AT3G08570.1 62.645 605 202 11 21 611 22 616 0.0 719
Msa1026870 AT3G08660.1 60.438 594 190 13 24 608 25 582 0.0 672
Msa1026870 AT3G08660.3 59.140 558 183 13 60 608 1 522 0.0 610
Msa1026870 AT5G48800.1 48.562 591 263 10 29 602 37 603 0.0 528
Msa1026870 AT1G03010.2 45.261 612 294 12 31 612 7 607 5.22e-165 484
Msa1026870 AT1G03010.3 45.203 615 296 12 28 612 30 633 6.25e-165 485
Msa1026870 AT1G03010.1 45.261 612 294 12 31 612 34 634 1.71e-164 484
Msa1026870 AT3G08660.2 56.977 430 147 9 24 446 25 423 9.88e-159 462
Msa1026870 AT2G47860.1 42.122 622 314 10 13 609 24 624 2.43e-153 456
Msa1026870 AT2G47860.3 40.989 627 308 10 31 609 35 647 7.76e-148 442
Msa1026870 AT5G67385.1 41.294 603 310 13 32 612 24 604 1.44e-138 417
Msa1026870 AT5G67385.4 41.075 577 296 13 58 612 5 559 1.37e-129 392
Msa1026870 AT5G67385.5 41.075 577 296 13 58 612 5 559 1.37e-129 392
Msa1026870 AT5G67385.2 41.075 577 296 13 58 612 5 559 1.37e-129 392
Msa1026870 AT5G67385.3 41.075 577 296 13 58 612 5 559 1.37e-129 392
Msa1026870 AT2G47860.5 41.085 516 269 8 119 609 1 506 6.07e-119 363
Msa1026870 AT2G47860.2 41.085 516 269 8 119 609 1 506 6.07e-119 363
Msa1026870 AT1G30440.1 38.210 581 312 14 36 576 29 602 2.99e-115 358
Msa1026870 AT5G13600.1 37.189 562 301 13 36 571 29 564 2.66e-110 343
Msa1026870 AT5G03250.1 37.838 555 287 14 33 555 26 554 1.22e-109 342
Msa1026870 AT2G30520.1 34.564 596 344 13 32 612 29 593 1.24e-107 337
Msa1026870 AT5G66560.1 34.992 643 306 14 9 560 2 623 9.57e-106 334
Msa1026870 AT3G49970.1 35.501 569 286 15 45 595 6 511 2.77e-105 328
Msa1026870 AT3G49970.2 35.501 569 286 15 45 595 6 511 2.77e-105 328
Msa1026870 AT3G50840.1 37.333 600 317 17 25 609 12 567 7.21e-105 328
Msa1026870 AT5G66560.3 35.585 607 286 13 45 560 2 594 7.04e-103 325
Msa1026870 AT3G44820.1 32.740 562 338 9 33 557 23 581 1.76e-102 325
Msa1026870 AT2G30520.2 34.435 575 331 13 53 612 2 545 7.89e-102 320
Msa1026870 AT2G30520.3 34.435 575 331 13 53 612 2 545 7.89e-102 320
Msa1026870 AT5G66560.4 38.015 534 269 12 75 560 65 584 1.41e-101 322
Msa1026870 AT2G47860.4 42.177 441 219 8 13 438 24 443 1.84e-101 315
Msa1026870 AT3G50840.2 36.796 568 304 16 57 609 4 531 1.33e-96 306
Msa1026870 AT3G50840.3 36.796 568 304 16 57 609 4 531 1.33e-96 306
Msa1026870 AT2G47860.6 40.583 446 213 8 31 438 35 466 2.52e-96 303
Msa1026870 AT2G14820.2 34.807 543 304 14 32 542 26 550 7.79e-91 294
Msa1026870 AT2G14820.1 34.807 543 304 14 32 542 26 550 7.79e-91 294
Msa1026870 AT1G67900.5 34.021 582 315 14 29 553 22 591 6.12e-86 281
Msa1026870 AT1G67900.1 34.021 582 315 14 29 553 22 591 6.12e-86 281
Msa1026870 AT1G67900.3 34.021 582 315 14 29 553 22 591 6.12e-86 281
Msa1026870 AT1G67900.6 34.021 582 315 14 29 553 22 591 6.12e-86 281
Msa1026870 AT1G67900.2 34.021 582 315 14 29 553 22 591 6.12e-86 281
Msa1026870 AT1G67900.4 34.021 582 315 14 29 553 22 591 6.12e-86 281
Msa1026870 AT4G31820.1 33.776 527 283 16 31 538 25 504 7.64e-83 271
Msa1026870 AT5G67440.3 34.917 484 286 13 29 499 23 490 1.03e-80 266
Msa1026870 AT5G67440.1 34.917 484 286 13 29 499 23 490 1.03e-80 266
Msa1026870 AT2G23050.1 32.972 461 260 10 46 498 40 459 9.29e-80 260
Msa1026870 AT5G03250.2 35.546 467 246 12 119 555 1 442 6.04e-79 258
Msa1026870 AT5G10250.2 31.216 551 314 12 31 549 48 565 3.22e-78 260
Msa1026870 AT4G37590.1 32.653 490 276 12 29 500 23 476 3.54e-76 254
Msa1026870 AT5G67440.2 35.054 465 273 13 48 499 5 453 4.69e-76 252
Msa1026870 AT5G10250.1 31.296 540 313 12 31 549 48 550 2.42e-74 249
Msa1026870 AT3G26490.1 32.604 503 280 10 29 489 22 507 4.64e-74 248
Msa1026870 AT3G26490.3 32.604 503 280 10 29 489 22 507 4.64e-74 248
Msa1026870 AT3G26490.4 32.604 503 280 10 29 489 22 507 4.64e-74 248
Msa1026870 AT5G66560.2 34.269 499 238 11 9 438 2 479 1.10e-73 244
Msa1026870 AT4G31820.2 34.573 457 246 15 60 497 1 423 2.66e-73 244
Msa1026870 AT5G47800.3 29.350 477 313 9 29 499 22 480 1.43e-64 222
Msa1026870 AT5G47800.1 29.350 477 313 9 29 499 22 480 1.43e-64 222
Msa1026870 AT5G47800.4 29.350 477 313 9 29 499 22 480 1.43e-64 222
Msa1026870 AT5G47800.2 29.350 477 313 9 29 499 135 593 1.09e-63 222
Msa1026870 AT1G52770.1 36.658 401 219 9 201 586 23 403 5.24e-63 215
Msa1026870 AT3G26490.2 30.684 453 255 10 29 439 22 457 7.00e-55 194
Msa1026870 AT2G23050.2 31.250 384 219 9 119 498 1 343 1.80e-54 189
Msa1026870 AT5G64330.1 34.857 350 187 8 272 584 371 716 2.01e-54 198
Msa1026870 AT5G64330.1 33.696 276 152 5 7 254 26 298 9.32e-39 152
Msa1026870 AT5G64330.3 41.700 247 121 4 272 498 312 555 7.00e-52 188
Msa1026870 AT5G64330.3 34.426 244 125 6 41 254 1 239 2.32e-34 138
Msa1026870 AT5G64330.2 41.700 247 121 4 272 498 371 614 1.77e-51 188
Msa1026870 AT5G64330.2 33.696 276 152 5 7 254 26 298 5.96e-39 152
Msa1026870 AT5G48130.1 29.039 489 275 13 33 498 39 478 2.24e-51 187
Msa1026870 AT3G15570.1 36.093 302 161 7 208 494 29 313 2.24e-51 184
Msa1026870 AT3G19850.1 28.513 491 281 13 36 488 6 464 3.22e-49 180
Msa1026870 AT3G22104.1 29.221 462 260 14 34 474 5 420 2.88e-44 165
Msa1026870 AT3G03510.1 27.184 412 244 9 88 495 8 367 4.45e-43 161
Msa1026870 AT1G50280.1 27.406 478 294 13 36 483 6 460 1.77e-40 155
Msa1026870 AT1G50280.2 27.523 436 268 11 73 483 15 427 1.51e-37 146
Msa1026870 AT5G17580.2 25.996 477 310 12 31 495 18 463 1.54e-33 135
Msa1026870 AT3G22104.4 29.897 388 207 12 106 474 4 345 2.54e-33 133
Msa1026870 AT3G22104.2 29.897 388 207 12 106 474 4 345 2.54e-33 133
Msa1026870 AT3G22104.3 29.897 388 207 12 106 474 4 345 2.54e-33 133
Msa1026870 AT5G17580.1 25.996 477 310 12 31 495 3 448 3.48e-33 134
Msa1026870 AT3G49900.1 28.512 242 136 10 389 599 198 433 1.05e-12 71.2
Msa1026870 AT3G49900.2 28.163 245 136 11 389 599 198 436 4.27e-11 66.2

Find 184 sgRNAs with CRISPR-Local

Find 261 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAATGTTTCTCTTCATCTT+TGG 0.209542 7_1:-59078089 Msa1026870:three_prime_UTR
GGTATTCTTCTGTCATTTCT+AGG 0.221446 7_1:+59079849 None:intergenic
CAATCATCCGTACACATTAT+TGG 0.231204 7_1:-59081312 Msa1026870:five_prime_UTR
TGCAAAGAGCAATTAGTTTC+TGG 0.240250 7_1:-59079659 Msa1026870:CDS
AAAAGTTGTGTTAGTGTATA+TGG 0.266044 7_1:-59081407 Msa1026870:five_prime_UTR
GTGTAAGAGTTGCAAAATTT+AGG 0.283416 7_1:+59081069 None:intergenic
CTGGTGTCCTCCTGGAAAAT+TGG 0.284753 7_1:+59079961 None:intergenic
CTTGTTCTGTTAATGCTGTA+TGG 0.294581 7_1:+59078701 None:intergenic
ATCTCCTCCACTATATTTAG+AGG 0.297450 7_1:+59079725 None:intergenic
ATGTTAAATGTTTCAGTAAC+AGG 0.318256 7_1:+59081246 None:intergenic
ATTTGTCAAACTTGCTCCTT+AGG 0.330918 7_1:-59077852 Msa1026870:three_prime_UTR
TTGAAAGAAGGATATCATTA+AGG 0.332998 7_1:-59079241 Msa1026870:CDS
ACACTGTGATGGTGAATCTA+AGG 0.338620 7_1:-59079624 Msa1026870:CDS
ATGATTGATAAAGCAGAAAA+TGG 0.344798 7_1:-59078349 Msa1026870:CDS
CTGGAATCGTCTTAGATTGC+AGG 0.350034 7_1:+59078020 None:intergenic
ATGCCCTTGACTTTCTTGTT+TGG 0.356108 7_1:-59079317 Msa1026870:CDS
AATGCCGTGTCGGGGAGTTC+AGG 0.363949 7_1:-59078544 Msa1026870:CDS
TATTGCTGTATGGGAAGTTA+AGG 0.371809 7_1:+59077761 None:intergenic
TGGCTTCAGCAACCATCTTC+CGG 0.381051 7_1:+59080017 None:intergenic
CTAGGATTTGTATTGCTGTA+TGG 0.382092 7_1:+59077751 None:intergenic
TCCGATGGGATTGGTTCTAA+TGG 0.384085 7_1:-59079074 Msa1026870:CDS
CAAACATCACTGAAGGGTAT+TGG 0.387098 7_1:-59079461 Msa1026870:CDS
GATATCATTAAGGTTGGAAA+TGG 0.388010 7_1:-59079231 Msa1026870:CDS
AAACATCACTGAAGGGTATT+GGG 0.388227 7_1:-59079460 Msa1026870:CDS
CAAGAAAGTCAAGGGCATAA+TGG 0.396795 7_1:+59079322 None:intergenic
GCAGTGTCTCTGTGTGCATC+TGG 0.397290 7_1:+59078001 None:intergenic
CTTGTTTGGCATGTTAAAGA+TGG 0.398461 7_1:-59079303 Msa1026870:CDS
GTATTGGGAAGTGTCAATTA+TGG 0.400883 7_1:-59079445 Msa1026870:CDS
AGCCGTCGACATTTATTTGA+AGG 0.403248 7_1:-59078904 Msa1026870:intron
TGAAACACTGGAACCCTTGT+TGG 0.405530 7_1:+59079997 None:intergenic
TTTGCAACTCTTACACTACT+AGG 0.408962 7_1:-59081062 Msa1026870:intron
CAAGTTCAATTGCGAAACTA+AGG 0.414838 7_1:+59078065 None:intergenic
TTAAAGATGGCTATCATGTT+AGG 0.417004 7_1:-59079290 Msa1026870:CDS
TGAAAATAAAACTAAGGAAA+AGG 0.419108 7_1:+59081183 None:intergenic
GTACGGATGATTGCAGGTTC+AGG 0.422116 7_1:+59081322 None:intergenic
TATATGTGCCATGGGAAGAA+TGG 0.424923 7_1:-59079528 Msa1026870:CDS
CTTCCGGATCTTCCCACTTA+GGG 0.425399 7_1:+59080033 None:intergenic
TCAAATGTCTGGTGTCCTCC+TGG 0.430176 7_1:+59079953 None:intergenic
TTGTTCTGTTAATGCTGTAT+GGG 0.435254 7_1:+59078702 None:intergenic
TGTAAACTTAAGCAAGGATC+AGG 0.435983 7_1:+59078993 None:intergenic
TCGCTTCCGCAACTCAAACT+AGG 0.437173 7_1:+59077733 None:intergenic
TGGTGTCCTCCTGGAAAATT+GGG 0.437510 7_1:+59079962 None:intergenic
TTGACGTGGATACAGTTCAT+AGG 0.437830 7_1:-59079157 Msa1026870:CDS
AAGAAGGATATCATTAAGGT+TGG 0.441280 7_1:-59079237 Msa1026870:CDS
TAATGTGTACGGATGATTGC+AGG 0.442042 7_1:+59081316 None:intergenic
ATATGTGCCATGGGAAGAAT+GGG 0.445842 7_1:-59079527 Msa1026870:CDS
GGGTTCCAGTGTTTCAAACT+TGG 0.447494 7_1:-59079990 Msa1026870:CDS
TGCAATTCTTCCTATCCCCT+TGG 0.448238 7_1:+59078303 None:intergenic
GACATTACAATTGTTGTTGA+TGG 0.448885 7_1:-59080432 Msa1026870:CDS
GTTGCAAAATTTAGGAGTAG+TGG 0.451556 7_1:+59081077 None:intergenic
TGGTGAATCTAAGGAAATAA+AGG 0.452867 7_1:-59079615 Msa1026870:CDS
AGCTGGAGATTTCAAGATTG+AGG 0.454447 7_1:-59078420 Msa1026870:CDS
TCATCGCAAGTTCAAATGTC+TGG 0.454966 7_1:+59079942 None:intergenic
CGAGTGCAGCCATGTCTCCT+AGG 0.456610 7_1:-59078483 Msa1026870:CDS
CTTTCAAGCTCAAGTCTACA+TGG 0.460194 7_1:+59079257 None:intergenic
GTCAATTATGGAATCAATCA+AGG 0.462880 7_1:-59079433 Msa1026870:CDS
CTCAGCTGCACAACGTAGTC+GGG 0.466601 7_1:+59079874 None:intergenic
CTTGCGATGAAGTTCTGTTA+TGG 0.470748 7_1:-59079929 Msa1026870:CDS
ATTGTGATGGTCACCTGAAA+AGG 0.478641 7_1:+59078128 None:intergenic
TCTTCCGGATCTTCCCACTT+AGG 0.479881 7_1:+59080032 None:intergenic
TAGGATTTGTATTGCTGTAT+GGG 0.482312 7_1:+59077752 None:intergenic
TCAATGACACGAGTATAATC+AGG 0.484634 7_1:+59078942 None:intergenic
TTTCCCTTGGTTACCCTAAG+TGG 0.486130 7_1:-59080046 Msa1026870:CDS
CCATGGCACATATAACTCTC+TGG 0.487049 7_1:+59079537 None:intergenic
AAGTCCAACTACTATAGAAA+AGG 0.489212 7_1:-59079402 Msa1026870:CDS
TTACCCTAAGTGGGAAGATC+CGG 0.489913 7_1:-59080036 Msa1026870:CDS
TTGTTGCAGTGGCTACCAAC+AGG 0.491935 7_1:-59077978 Msa1026870:three_prime_UTR
GCTGGAGATTTCAAGATTGA+GGG 0.494686 7_1:-59078419 Msa1026870:CDS
TTTCCTTTCCTAGCAACCTA+AGG 0.495523 7_1:+59077836 None:intergenic
TAGAAATGACAGAAGAATAC+CGG 0.497733 7_1:-59079847 Msa1026870:CDS
ACACCTCCATTCCTTTCTGT+TGG 0.498389 7_1:-59077897 Msa1026870:three_prime_UTR
GCTCTTCCTCCTTGTGTCTG+AGG 0.498730 7_1:+59081208 None:intergenic
GGATATGAATCCGATGGGAT+TGG 0.499189 7_1:-59079083 Msa1026870:CDS
AGCGCAACTGCTCAAAATAC+AGG 0.499703 7_1:+59078572 None:intergenic
AGAGAATCGAGAACTGAAGC+TGG 0.499912 7_1:-59078437 Msa1026870:CDS
AGGAAGTCTAGGGGAACAGA+GGG 0.501713 7_1:-59078238 Msa1026870:CDS
TTCTTTACCTCTCTTTCCAA+GGG 0.502762 7_1:-59078319 Msa1026870:CDS
GTGTCGGGGAGTTCAGGAGA+TGG 0.504014 7_1:-59078538 Msa1026870:CDS
GTTCATCATGTAGTTTCCCT+TGG 0.504486 7_1:-59080059 Msa1026870:intron
ACATTACAATTGTTGTTGAT+GGG 0.505506 7_1:-59080431 Msa1026870:CDS
ACCATGCTGCACAGAATGAC+AGG 0.507865 7_1:-59078621 Msa1026870:CDS
AAATTTAGGAGTAGTGGTAG+TGG 0.508904 7_1:+59081083 None:intergenic
TAGTTTCTACAATTGTCCTC+TGG 0.511419 7_1:+59079378 None:intergenic
TTTCTTTACCTCTCTTTCCA+AGG 0.515094 7_1:-59078320 Msa1026870:CDS
AGATTTCAAGATTGAGGGTG+AGG 0.515783 7_1:-59078414 Msa1026870:CDS
AAAGAGTGAAAATAAAACTA+AGG 0.516545 7_1:+59081177 None:intergenic
TGTCGGGGAGTTCAGGAGAT+GGG 0.520284 7_1:-59078537 Msa1026870:CDS
AAAAGCAAGTAGGAAGTCTA+GGG 0.521721 7_1:-59078248 Msa1026870:CDS
CATAGTTCTCTGCTAAAAGT+AGG 0.521946 7_1:-59079050 Msa1026870:CDS
CTCTTTGTAACGGGATAGGA+AGG 0.523039 7_1:-59081160 Msa1026870:five_prime_UTR
GAGGAGATAGAAATCACAAA+AGG 0.526489 7_1:-59079710 Msa1026870:CDS
GCTCCTTAGGTTGCTAGGAA+AGG 0.526916 7_1:-59077839 Msa1026870:three_prime_UTR
GAGGAAGAAGCGGAAGACTA+CGG 0.527391 7_1:-59079104 Msa1026870:CDS
TCCTATCCCCTTGGAAAGAG+AGG 0.527410 7_1:+59078312 None:intergenic
GGAGTCATTTCTGCTACATA+AGG 0.529774 7_1:-59080409 Msa1026870:intron
GAGGGTGAGGCTGAGTGAGT+TGG 0.529782 7_1:-59078401 Msa1026870:CDS
AATTGATTGCTATGTGTTGA+GGG 0.530471 7_1:-59081373 Msa1026870:five_prime_UTR
ACCTCTCTTTCCAAGGGGAT+AGG 0.535768 7_1:-59078313 Msa1026870:CDS
AACTTGCTCCTTAGGTTGCT+AGG 0.536109 7_1:-59077844 Msa1026870:three_prime_UTR
ACTCAGCTGCACAACGTAGT+CGG 0.537711 7_1:+59079873 None:intergenic
GAGTCTCCACTCTGCAGAGA+TGG 0.538497 7_1:+59079185 None:intergenic
CCAGAGAGTTATATGTGCCA+TGG 0.541278 7_1:-59079537 Msa1026870:CDS
TAGGAGATATTCTCTCTCAT+AGG 0.541681 7_1:-59078200 Msa1026870:exon
GGTGTTATGCCTCTGCGACT+AGG 0.541721 7_1:+59077915 None:intergenic
CAAACTGTAGCTTATAGCTA+TGG 0.550167 7_1:+59081273 None:intergenic
TTCACTCTTTGTAACGGGAT+AGG 0.551855 7_1:-59081164 Msa1026870:five_prime_UTR
TAGGAAGTCTAGGGGAACAG+AGG 0.551922 7_1:-59078239 Msa1026870:CDS
GAGGCTGAGTGAGTTGGAGA+AGG 0.553823 7_1:-59078395 Msa1026870:CDS
ACATTACAAGATGTGGAGAA+TGG 0.554501 7_1:-59077938 Msa1026870:three_prime_UTR
TTCCCTTGGTTACCCTAAGT+GGG 0.556169 7_1:-59080045 Msa1026870:CDS
AGAGACACTGCTTGTTGCAG+TGG 0.557772 7_1:-59077989 Msa1026870:three_prime_UTR
TATACTCGTGTCATTGATGA+TGG 0.558019 7_1:-59078936 Msa1026870:CDS
AAGTGGGAAGATCCGGAAGA+TGG 0.559265 7_1:-59080029 Msa1026870:CDS
AAGCTCAAGTCTACATGGAA+TGG 0.562877 7_1:+59079262 None:intergenic
TTATGCTCAAACATCACTGA+AGG 0.563509 7_1:-59079468 Msa1026870:CDS
AAGCTCCAAGTTTGAAACAC+TGG 0.565146 7_1:+59079985 None:intergenic
CTATCATCCAATAATGTGTA+CGG 0.566905 7_1:+59081305 None:intergenic
CAGAGAGTTATATGTGCCAT+GGG 0.567364 7_1:-59079536 Msa1026870:CDS
AACTGTATCCACGTCAAACA+AGG 0.568381 7_1:+59079163 None:intergenic
CTAGGAGACATGGCTGCACT+CGG 0.571055 7_1:+59078484 None:intergenic
AAACACTACATTACAAGATG+TGG 0.571710 7_1:-59077945 Msa1026870:three_prime_UTR
TGACAGGCTTCCACTGCAGA+TGG 0.573993 7_1:-59078605 Msa1026870:CDS
ATCACAATGTGTAAATGAGT+TGG 0.575755 7_1:-59078113 Msa1026870:three_prime_UTR
TGAAAAGGTAGAAATAATAG+CGG 0.575889 7_1:+59078143 None:intergenic
TACTAGAGAATTTCTTGCTG+CGG 0.576816 7_1:-59079133 Msa1026870:CDS
ATTTAGAGGTAACATCTCAC+AGG 0.576926 7_1:+59079739 None:intergenic
GATGGTTGCTGAAGCCAACA+AGG 0.578445 7_1:-59080011 Msa1026870:CDS
TAATTGATTGCTATGTGTTG+AGG 0.582794 7_1:-59081374 Msa1026870:five_prime_UTR
TTGTCTTTCAAAATCTTCAG+AGG 0.582903 7_1:-59079781 Msa1026870:CDS
AGTGATGCGTAGTTGTCCCT+AGG 0.583178 7_1:+59078466 None:intergenic
TGTTTAATGATGCTTCCTGT+TGG 0.585892 7_1:+59077963 None:intergenic
CATTACAATTGTTGTTGATG+GGG 0.586267 7_1:-59080430 Msa1026870:CDS
GCCTGTCATTCTGTGCAGCA+TGG 0.587678 7_1:+59078620 None:intergenic
AGAAATCACAAAAGGATCTG+TGG 0.587984 7_1:-59079702 Msa1026870:CDS
GACTACGGATATGAATCCGA+TGG 0.588057 7_1:-59079089 Msa1026870:CDS
TTTCTTGCTGCGGATTGAAG+AGG 0.588755 7_1:-59079123 Msa1026870:CDS
GTAGACTTGAGCTTGAAAGA+AGG 0.589390 7_1:-59079253 Msa1026870:CDS
ACAAATCCTAGTTTGAGTTG+CGG 0.591389 7_1:-59077739 None:intergenic
ATGCCAAACAAGAAAGTCAA+GGG 0.592092 7_1:+59079314 None:intergenic
TACCTTCAAATAAATGTCGA+CGG 0.594449 7_1:+59078902 None:intergenic
AACTCATTTACACATTGTGA+TGG 0.597218 7_1:+59078115 None:intergenic
TGGAATCGTCTTAGATTGCA+GGG 0.600775 7_1:+59078021 None:intergenic
GCGGATTGAAGAGGAAGAAG+CGG 0.602675 7_1:-59079114 Msa1026870:CDS
GAAAAGGTAGAAATAATAGC+GGG 0.603402 7_1:+59078144 None:intergenic
GAGTGCAGCCATGTCTCCTA+GGG 0.603694 7_1:-59078482 Msa1026870:CDS
AGGACGCCAACAGAAAGGAA+TGG 0.603917 7_1:+59077891 None:intergenic
TTATCTAAATTACACTGTGA+TGG 0.607505 7_1:-59079635 Msa1026870:CDS
GATGTTACCTCTAAATATAG+TGG 0.608574 7_1:-59079732 Msa1026870:CDS
GTAGTTGTCCCTAGGAGACA+TGG 0.609118 7_1:+59078474 None:intergenic
AATTTCTGTAAACTTAAGCA+AGG 0.609664 7_1:+59078987 None:intergenic
GGAAATAAAGGATGAGTGCG+TGG 0.609921 7_1:-59079603 Msa1026870:CDS
TCCATTAGAACCAATCCCAT+CGG 0.611977 7_1:+59079073 None:intergenic
TCAAAATCTTCAGAGGTCAG+TGG 0.615237 7_1:-59079774 Msa1026870:CDS
CTCAAGTCTACATGGAATGG+TGG 0.615599 7_1:+59079265 None:intergenic
TGGAGACTCCTTGTTTGACG+TGG 0.616985 7_1:-59079171 Msa1026870:CDS
ACTACGGATATGAATCCGAT+GGG 0.617539 7_1:-59079088 Msa1026870:CDS
AAATATCTGTTCTTGAGACG+AGG 0.617565 7_1:+59079816 None:intergenic
CTTCCCACTTAGGGTAACCA+AGG 0.621549 7_1:+59080042 None:intergenic
CATGCCAAACAAGAAAGTCA+AGG 0.626670 7_1:+59079313 None:intergenic
ATCTCCTGAACTCCCCGACA+CGG 0.634657 7_1:+59078540 None:intergenic
ACTTGTACCACCATCTGCAG+TGG 0.636178 7_1:+59078595 None:intergenic
GAGCAAATGTTCATGAAACA+AGG 0.641551 7_1:-59078373 Msa1026870:CDS
GTTACCTCTAAATATAGTGG+AGG 0.652145 7_1:-59079729 Msa1026870:CDS
AGAAATGACAGAAGAATACC+GGG 0.655554 7_1:-59079846 Msa1026870:CDS
TCTTTACCTCTCTTTCCAAG+GGG 0.657565 7_1:-59078318 Msa1026870:CDS
CAGGCTTCCACTGCAGATGG+TGG 0.658123 7_1:-59078602 Msa1026870:CDS
AGGATGAGTGCGTGGCATGG+TGG 0.659308 7_1:-59079595 Msa1026870:CDS
CTTATACCATCTCTGCAGAG+TGG 0.662626 7_1:-59079191 Msa1026870:CDS
GCAGACACACCTCAGACACA+AGG 0.663549 7_1:-59081217 Msa1026870:five_prime_UTR
TAAAGGATGAGTGCGTGGCA+TGG 0.669308 7_1:-59079598 Msa1026870:CDS
TATGCTCAAACATCACTGAA+GGG 0.669855 7_1:-59079467 Msa1026870:CDS
GGAGAATGGCCTAGTCGCAG+AGG 0.671003 7_1:-59077924 Msa1026870:three_prime_UTR
TTCCCACTTAGGGTAACCAA+GGG 0.672159 7_1:+59080043 None:intergenic
CTACTATAGAAAAGGACCAG+AGG 0.676803 7_1:-59079394 Msa1026870:CDS
ATTGCAGGGACTATGAAGAG+TGG 0.686741 7_1:+59078035 None:intergenic
ATGTGCCATGGGAAGAATGG+GGG 0.687594 7_1:-59079525 Msa1026870:CDS
GACACACCTCAGACACAAGG+AGG 0.691013 7_1:-59081214 Msa1026870:five_prime_UTR
ACGCCAACAGAAAGGAATGG+AGG 0.698256 7_1:+59077894 None:intergenic
ATGGTTGCTGAAGCCAACAA+GGG 0.702263 7_1:-59080010 Msa1026870:CDS
AAAGCAAGTAGGAAGTCTAG+GGG 0.706742 7_1:-59078247 Msa1026870:CDS
GGAAGTCTAGGGGAACAGAG+GGG 0.710110 7_1:-59078237 Msa1026870:CDS
TATGTGCCATGGGAAGAATG+GGG 0.721508 7_1:-59079526 Msa1026870:CDS
CTATCACAGAGAATAAGTAG+CGG 0.734925 7_1:-59078511 Msa1026870:CDS
GGGACAACTACGCATCACTG+CGG 0.795492 7_1:-59078462 Msa1026870:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAGTTTTATATGATAAATT+TGG - chr7_1:59078827-59078846 Msa1026870:intron 10.0%
!!! TTCTTTTCATTTTTATAACA+TGG + chr7_1:59077747-59077766 None:intergenic 15.0%
!!! AATCATATTTTTCTTCTTTA+TGG - chr7_1:59078693-59078712 Msa1026870:CDS 15.0%
!! ATATTTATGGATTCTAATTA+AGG + chr7_1:59078897-59078916 None:intergenic 15.0%
!! AATTCATGTTAACATATTTA+TGG + chr7_1:59078910-59078929 None:intergenic 15.0%
!!! AAATACATTGTATCATTTTA+AGG + chr7_1:59081305-59081324 None:intergenic 15.0%
!! TGAAAATAAAACTAAGGAAA+AGG + chr7_1:59077993-59078012 None:intergenic 20.0%
!! AAAGAGTGAAAATAAAACTA+AGG + chr7_1:59077999-59078018 None:intergenic 20.0%
!!! TTTATTTTCACTCTTTGTAA+CGG - chr7_1:59078003-59078022 Msa1026870:three_prime_UTR 20.0%
!! AAGAAGCAAAAGATAAATAA+GGG + chr7_1:59078162-59078181 None:intergenic 20.0%
!! TAAGAAGCAAAAGATAAATA+AGG + chr7_1:59078163-59078182 None:intergenic 20.0%
!! AAATTTGGTTATTATGACTT+TGG - chr7_1:59078842-59078861 Msa1026870:intron 20.0%
!! TAATATGAGTATTCAAAAGA+TGG + chr7_1:59078985-59079004 None:intergenic 20.0%
!!! TAAAAGCTAATTTGTTGTAA+TGG - chr7_1:59079092-59079111 Msa1026870:CDS 20.0%
! AAAAGTTGTGTTAGTGTATA+TGG - chr7_1:59077766-59077785 Msa1026870:three_prime_UTR 25.0%
! ATGTTAAATGTTTCAGTAAC+AGG + chr7_1:59077930-59077949 None:intergenic 25.0%
!! TTATTTTCACTCTTTGTAAC+GGG - chr7_1:59078004-59078023 Msa1026870:three_prime_UTR 25.0%
! GAAGGAAGAAAAAACAAATA+TGG - chr7_1:59078031-59078050 Msa1026870:three_prime_UTR 25.0%
! AGAAGCAAAAGATAAATAAG+GGG + chr7_1:59078161-59078180 None:intergenic 25.0%
! GTGTATTGTACTGTATTATA+TGG - chr7_1:59078203-59078222 Msa1026870:CDS 25.0%
! GAATTAAGATTAAGATGCTT+TGG - chr7_1:59078592-59078611 Msa1026870:CDS 25.0%
!! ATATTTTTCTTCTTTATGGC+AGG - chr7_1:59078697-59078716 Msa1026870:CDS 25.0%
!! ACATTACAATTGTTGTTGAT+GGG - chr7_1:59078742-59078761 Msa1026870:intron 25.0%
! TTTCTTTGGTATTTCAAAGT+AGG + chr7_1:59078948-59078967 None:intergenic 25.0%
! TTATCTAAATTACACTGTGA+TGG - chr7_1:59079538-59079557 Msa1026870:CDS 25.0%
! TTGAAAGAAGGATATCATTA+AGG - chr7_1:59079932-59079951 Msa1026870:CDS 25.0%
! AATTTCTGTAAACTTAAGCA+AGG + chr7_1:59080189-59080208 None:intergenic 25.0%
! ACAATTAAGTGCCTAAATAT+TGG + chr7_1:59080335-59080354 None:intergenic 25.0%
! ATGATTGATAAAGCAGAAAA+TGG - chr7_1:59080824-59080843 Msa1026870:intron 25.0%
! TGAAAAGGTAGAAATAATAG+CGG + chr7_1:59081033-59081052 None:intergenic 25.0%
TAATTGATTGCTATGTGTTG+AGG - chr7_1:59077799-59077818 Msa1026870:three_prime_UTR 30.0%
AATTGATTGCTATGTGTTGA+GGG - chr7_1:59077800-59077819 Msa1026870:three_prime_UTR 30.0%
CTATCATCCAATAATGTGTA+CGG + chr7_1:59077871-59077890 None:intergenic 30.0%
GTGTAAGAGTTGCAAAATTT+AGG + chr7_1:59078107-59078126 None:intergenic 30.0%
TACTAGGTACTTCAGTAATA+AGG - chr7_1:59078127-59078146 Msa1026870:three_prime_UTR 30.0%
! GACATTACAATTGTTGTTGA+TGG - chr7_1:59078741-59078760 Msa1026870:intron 30.0%
! CATTACAATTGTTGTTGATG+GGG - chr7_1:59078743-59078762 Msa1026870:intron 30.0%
AATTGAATATGTACGAGGTT+AGG + chr7_1:59078806-59078825 None:intergenic 30.0%
CTTACAATTGAATATGTACG+AGG + chr7_1:59078811-59078830 None:intergenic 30.0%
GACTTTGGATTTCTATGAAT+TGG - chr7_1:59078857-59078876 Msa1026870:intron 30.0%
ATTTCAAAGTAGGCACTTAT+GGG + chr7_1:59078938-59078957 None:intergenic 30.0%
TATTTCAAAGTAGGCACTTA+TGG + chr7_1:59078939-59078958 None:intergenic 30.0%
!!! AAGGCATCAACTTTTTTCTT+TGG + chr7_1:59078962-59078981 None:intergenic 30.0%
ATGAGTATTCAAAAGATGGA+AGG + chr7_1:59078981-59079000 None:intergenic 30.0%
TAGAAATGACAGAAGAATAC+CGG - chr7_1:59079326-59079345 Msa1026870:CDS 30.0%
TTGTCTTTCAAAATCTTCAG+AGG - chr7_1:59079392-59079411 Msa1026870:CDS 30.0%
GATGTTACCTCTAAATATAG+TGG - chr7_1:59079441-59079460 Msa1026870:CDS 30.0%
TGGTGAATCTAAGGAAATAA+AGG - chr7_1:59079558-59079577 Msa1026870:CDS 30.0%
GTCAATTATGGAATCAATCA+AGG - chr7_1:59079740-59079759 Msa1026870:CDS 30.0%
AAGTCCAACTACTATAGAAA+AGG - chr7_1:59079771-59079790 Msa1026870:CDS 30.0%
TTAAAGATGGCTATCATGTT+AGG - chr7_1:59079883-59079902 Msa1026870:CDS 30.0%
AAGAAGGATATCATTAAGGT+TGG - chr7_1:59079936-59079955 Msa1026870:CDS 30.0%
GATATCATTAAGGTTGGAAA+TGG - chr7_1:59079942-59079961 Msa1026870:CDS 30.0%
TACCTTCAAATAAATGTCGA+CGG + chr7_1:59080274-59080293 None:intergenic 30.0%
TTTCCCTGATTCCAATATTT+AGG - chr7_1:59080321-59080340 Msa1026870:intron 30.0%
! CTTTTGCAAGATTGAGAATA+TGG + chr7_1:59080362-59080381 None:intergenic 30.0%
TTGTTCTGTTAATGCTGTAT+GGG + chr7_1:59080474-59080493 None:intergenic 30.0%
!! ATTGCAAATTTTAGCAGTCA+AGG - chr7_1:59080887-59080906 Msa1026870:intron 30.0%
GAAAAGGTAGAAATAATAGC+GGG + chr7_1:59081032-59081051 None:intergenic 30.0%
!!! GCTATTATTTCTACCTTTTC+AGG - chr7_1:59081032-59081051 Msa1026870:intron 30.0%
AACTCATTTACACATTGTGA+TGG + chr7_1:59081061-59081080 None:intergenic 30.0%
ATCACAATGTGTAAATGAGT+TGG - chr7_1:59081060-59081079 Msa1026870:intron 30.0%
CAAATGTTTCTCTTCATCTT+TGG - chr7_1:59081084-59081103 Msa1026870:CDS 30.0%
AAACACTACATTACAAGATG+TGG - chr7_1:59081228-59081247 Msa1026870:five_prime_UTR 30.0%
TAGGATTTGTATTGCTGTAT+GGG + chr7_1:59081424-59081443 None:intergenic 30.0%
! TATGTGTTGAGGGTCTTTTA+GGG - chr7_1:59077810-59077829 Msa1026870:three_prime_UTR 35.0%
CAATCATCCGTACACATTAT+TGG - chr7_1:59077861-59077880 Msa1026870:three_prime_UTR 35.0%
CAAACTGTAGCTTATAGCTA+TGG + chr7_1:59077903-59077922 None:intergenic 35.0%
! AGAAGAAGAGAGTGAGTTTT+CGG + chr7_1:59078060-59078079 None:intergenic 35.0%
AAATTTAGGAGTAGTGGTAG+TGG + chr7_1:59078093-59078112 None:intergenic 35.0%
GTTGCAAAATTTAGGAGTAG+TGG + chr7_1:59078099-59078118 None:intergenic 35.0%
TTTGCAACTCTTACACTACT+AGG - chr7_1:59078111-59078130 Msa1026870:three_prime_UTR 35.0%
ACTAAATTTCCATCCAACAC+AGG - chr7_1:59078419-59078438 Msa1026870:CDS 35.0%
! GGTAGAATTACATGCTTTTG+AGG - chr7_1:59078471-59078490 Msa1026870:CDS 35.0%
!!! TGCTTTTGAGGTAGCTTTTA+TGG - chr7_1:59078483-59078502 Msa1026870:CDS 35.0%
!!! GCTTTTGAGGTAGCTTTTAT+GGG - chr7_1:59078484-59078503 Msa1026870:CDS 35.0%
AGATTAAGATGCTTTGGTTG+TGG - chr7_1:59078598-59078617 Msa1026870:CDS 35.0%
CTGATCAACTCAAGACTATT+CGG - chr7_1:59079011-59079030 Msa1026870:CDS 35.0%
! GGTATTCTTCTGTCATTTCT+AGG + chr7_1:59079327-59079346 None:intergenic 35.0%
AGAAATGACAGAAGAATACC+GGG - chr7_1:59079327-59079346 Msa1026870:CDS 35.0%
AAATATCTGTTCTTGAGACG+AGG + chr7_1:59079360-59079379 None:intergenic 35.0%
ATTTAGAGGTAACATCTCAC+AGG + chr7_1:59079437-59079456 None:intergenic 35.0%
GTTACCTCTAAATATAGTGG+AGG - chr7_1:59079444-59079463 Msa1026870:CDS 35.0%
ATCTCCTCCACTATATTTAG+AGG + chr7_1:59079451-59079470 None:intergenic 35.0%
GAGGAGATAGAAATCACAAA+AGG - chr7_1:59079463-59079482 Msa1026870:CDS 35.0%
AGAAATCACAAAAGGATCTG+TGG - chr7_1:59079471-59079490 Msa1026870:CDS 35.0%
! TGCAAAGAGCAATTAGTTTC+TGG - chr7_1:59079514-59079533 Msa1026870:CDS 35.0%
TTATGCTCAAACATCACTGA+AGG - chr7_1:59079705-59079724 Msa1026870:CDS 35.0%
TATGCTCAAACATCACTGAA+GGG - chr7_1:59079706-59079725 Msa1026870:CDS 35.0%
!! AAACATCACTGAAGGGTATT+GGG - chr7_1:59079713-59079732 Msa1026870:CDS 35.0%
!! GTATTGGGAAGTGTCAATTA+TGG - chr7_1:59079728-59079747 Msa1026870:CDS 35.0%
! TGGTCCTTTTCTATAGTAGT+TGG + chr7_1:59079778-59079797 None:intergenic 35.0%
TAGTTTCTACAATTGTCCTC+TGG + chr7_1:59079798-59079817 None:intergenic 35.0%
ATGCCAAACAAGAAAGTCAA+GGG + chr7_1:59079862-59079881 None:intergenic 35.0%
CTTGTTTGGCATGTTAAAGA+TGG - chr7_1:59079870-59079889 Msa1026870:CDS 35.0%
TACTAGAGAATTTCTTGCTG+CGG - chr7_1:59080040-59080059 Msa1026870:CDS 35.0%
CATAGTTCTCTGCTAAAAGT+AGG - chr7_1:59080123-59080142 Msa1026870:intron 35.0%
TGTAAACTTAAGCAAGGATC+AGG + chr7_1:59080183-59080202 None:intergenic 35.0%
TCAATGACACGAGTATAATC+AGG + chr7_1:59080234-59080253 None:intergenic 35.0%
! TATACTCGTGTCATTGATGA+TGG - chr7_1:59080237-59080256 Msa1026870:intron 35.0%
GTGCCTAAATATTGGAATCA+GGG + chr7_1:59080327-59080346 None:intergenic 35.0%
AGTGCCTAAATATTGGAATC+AGG + chr7_1:59080328-59080347 None:intergenic 35.0%
CTTGTTCTGTTAATGCTGTA+TGG + chr7_1:59080475-59080494 None:intergenic 35.0%
CTATCACAGAGAATAAGTAG+CGG - chr7_1:59080662-59080681 Msa1026870:intron 35.0%
GAGCAAATGTTCATGAAACA+AGG - chr7_1:59080800-59080819 Msa1026870:intron 35.0%
TTTCTTTACCTCTCTTTCCA+AGG - chr7_1:59080853-59080872 Msa1026870:intron 35.0%
TTCTTTACCTCTCTTTCCAA+GGG - chr7_1:59080854-59080873 Msa1026870:intron 35.0%
!! TAGACTTCCTACTTGCTTTT+TGG + chr7_1:59080925-59080944 None:intergenic 35.0%
AAAAAGCAAGTAGGAAGTCT+AGG - chr7_1:59080924-59080943 Msa1026870:intron 35.0%
AAAAGCAAGTAGGAAGTCTA+GGG - chr7_1:59080925-59080944 Msa1026870:intron 35.0%
TAGGAGATATTCTCTCTCAT+AGG - chr7_1:59080973-59080992 Msa1026870:intron 35.0%
CAAGTTCAATTGCGAAACTA+AGG + chr7_1:59081111-59081130 None:intergenic 35.0%
TGTTTAATGATGCTTCCTGT+TGG + chr7_1:59081213-59081232 None:intergenic 35.0%
ACATTACAAGATGTGGAGAA+TGG - chr7_1:59081235-59081254 Msa1026870:five_prime_UTR 35.0%
! ATTTGTCAAACTTGCTCCTT+AGG - chr7_1:59081321-59081340 Msa1026870:five_prime_UTR 35.0%
TATTGCTGTATGGGAAGTTA+AGG + chr7_1:59081415-59081434 None:intergenic 35.0%
CTAGGATTTGTATTGCTGTA+TGG + chr7_1:59081425-59081444 None:intergenic 35.0%
! CTATGTGTTGAGGGTCTTTT+AGG - chr7_1:59077809-59077828 Msa1026870:three_prime_UTR 40.0%
TAATGTGTACGGATGATTGC+AGG + chr7_1:59077860-59077879 None:intergenic 40.0%
! TTCACTCTTTGTAACGGGAT+AGG - chr7_1:59078009-59078028 Msa1026870:three_prime_UTR 40.0%
! CTTGATTAGCTAGCTTCAAG+AGG - chr7_1:59078350-59078369 Msa1026870:CDS 40.0%
CAAAAGCTACAAAGACCTCA+GGG + chr7_1:59078450-59078469 None:intergenic 40.0%
TCAAAAGCTACAAAGACCTC+AGG + chr7_1:59078451-59078470 None:intergenic 40.0%
! TGAGGTCTTTGTAGCTTTTG+AGG - chr7_1:59078450-59078469 Msa1026870:CDS 40.0%
GTTGTGGTAGAAGGAATAAG+AGG - chr7_1:59078614-59078633 Msa1026870:CDS 40.0%
GGAGTCATTTCTGCTACATA+AGG - chr7_1:59078764-59078783 Msa1026870:intron 40.0%
GTTCATCATGTAGTTTCCCT+TGG - chr7_1:59079114-59079133 Msa1026870:CDS 40.0%
! AAGCTCCAAGTTTGAAACAC+TGG + chr7_1:59079191-59079210 None:intergenic 40.0%
TCATCGCAAGTTCAAATGTC+TGG + chr7_1:59079234-59079253 None:intergenic 40.0%
CTTGCGATGAAGTTCTGTTA+TGG - chr7_1:59079244-59079263 Msa1026870:CDS 40.0%
TCAAAATCTTCAGAGGTCAG+TGG - chr7_1:59079399-59079418 Msa1026870:CDS 40.0%
! ACACTGTGATGGTGAATCTA+AGG - chr7_1:59079549-59079568 Msa1026870:CDS 40.0%
CAGAGAGTTATATGTGCCAT+GGG - chr7_1:59079637-59079656 Msa1026870:CDS 40.0%
TATATGTGCCATGGGAAGAA+TGG - chr7_1:59079645-59079664 Msa1026870:CDS 40.0%
ATATGTGCCATGGGAAGAAT+GGG - chr7_1:59079646-59079665 Msa1026870:CDS 40.0%
! CAAACATCACTGAAGGGTAT+TGG - chr7_1:59079712-59079731 Msa1026870:CDS 40.0%
CTACTATAGAAAAGGACCAG+AGG - chr7_1:59079779-59079798 Msa1026870:CDS 40.0%
! ATGGAAGAGCTTTTGTCTGT+TGG + chr7_1:59079835-59079854 None:intergenic 40.0%
! CAAGAAAGTCAAGGGCATAA+TGG + chr7_1:59079854-59079873 None:intergenic 40.0%
ATGCCCTTGACTTTCTTGTT+TGG - chr7_1:59079856-59079875 Msa1026870:CDS 40.0%
CATGCCAAACAAGAAAGTCA+AGG + chr7_1:59079863-59079882 None:intergenic 40.0%
AAGCTCAAGTCTACATGGAA+TGG + chr7_1:59079914-59079933 None:intergenic 40.0%
CTTTCAAGCTCAAGTCTACA+TGG + chr7_1:59079919-59079938 None:intergenic 40.0%
GTAGACTTGAGCTTGAAAGA+AGG - chr7_1:59079920-59079939 Msa1026870:CDS 40.0%
AACTGTATCCACGTCAAACA+AGG + chr7_1:59080013-59080032 None:intergenic 40.0%
TTGACGTGGATACAGTTCAT+AGG - chr7_1:59080016-59080035 Msa1026870:CDS 40.0%
ACTACGGATATGAATCCGAT+GGG - chr7_1:59080085-59080104 Msa1026870:intron 40.0%
TCCATTAGAACCAATCCCAT+CGG + chr7_1:59080103-59080122 None:intergenic 40.0%
AGCCGTCGACATTTATTTGA+AGG - chr7_1:59080269-59080288 Msa1026870:intron 40.0%
GTGCATTGTCAACATGAAGT+AGG + chr7_1:59080432-59080451 None:intergenic 40.0%
AGCTGGAGATTTCAAGATTG+AGG - chr7_1:59080753-59080772 Msa1026870:intron 40.0%
GCTGGAGATTTCAAGATTGA+GGG - chr7_1:59080754-59080773 Msa1026870:intron 40.0%
AGATTTCAAGATTGAGGGTG+AGG - chr7_1:59080759-59080778 Msa1026870:intron 40.0%
TCTTTACCTCTCTTTCCAAG+GGG - chr7_1:59080855-59080874 Msa1026870:intron 40.0%
!! GCAAATTTTAGCAGTCAAGG+TGG - chr7_1:59080890-59080909 Msa1026870:intron 40.0%
!! AATTTTAGCAGTCAAGGTGG+AGG - chr7_1:59080893-59080912 Msa1026870:intron 40.0%
GAAATCGCCAAAAAGCAAGT+AGG - chr7_1:59080915-59080934 Msa1026870:intron 40.0%
AAAGCAAGTAGGAAGTCTAG+GGG - chr7_1:59080926-59080945 Msa1026870:intron 40.0%
ATTGTGATGGTCACCTGAAA+AGG + chr7_1:59081048-59081067 None:intergenic 40.0%
TGGAATCGTCTTAGATTGCA+GGG + chr7_1:59081155-59081174 None:intergenic 40.0%
!! TTTTAAGGACGCCAACAGAA+AGG + chr7_1:59081290-59081309 None:intergenic 40.0%
TTTCCTTTCCTAGCAACCTA+AGG + chr7_1:59081340-59081359 None:intergenic 40.0%
! CTCTTTGTAACGGGATAGGA+AGG - chr7_1:59078013-59078032 Msa1026870:three_prime_UTR 45.0%
AGGGAAAAACCTGTGTTGGA+TGG + chr7_1:59078431-59078450 None:intergenic 45.0%
GATGCTTTGGTTGTGGTAGA+AGG - chr7_1:59078605-59078624 Msa1026870:CDS 45.0%
AGAAGGAATAAGAGGACGCA+TGG - chr7_1:59078622-59078641 Msa1026870:CDS 45.0%
GAAGGAATAAGAGGACGCAT+GGG - chr7_1:59078623-59078642 Msa1026870:CDS 45.0%
! AGGATTTTCGCTGATGTTGC+TGG - chr7_1:59078717-59078736 Msa1026870:intron 45.0%
TTTCCCTTGGTTACCCTAAG+TGG - chr7_1:59079127-59079146 Msa1026870:CDS 45.0%
TTCCCTTGGTTACCCTAAGT+GGG - chr7_1:59079128-59079147 Msa1026870:CDS 45.0%
TTCCCACTTAGGGTAACCAA+GGG + chr7_1:59079133-59079152 None:intergenic 45.0%
TTACCCTAAGTGGGAAGATC+CGG - chr7_1:59079137-59079156 Msa1026870:CDS 45.0%
ATGGTTGCTGAAGCCAACAA+GGG - chr7_1:59079163-59079182 Msa1026870:CDS 45.0%
TGAAACACTGGAACCCTTGT+TGG + chr7_1:59079179-59079198 None:intergenic 45.0%
GGGTTCCAGTGTTTCAAACT+TGG - chr7_1:59079183-59079202 Msa1026870:CDS 45.0%
! TTGGAGCTTCCCAATTTTCC+AGG - chr7_1:59079202-59079221 Msa1026870:CDS 45.0%
TGGTGTCCTCCTGGAAAATT+GGG + chr7_1:59079214-59079233 None:intergenic 45.0%
!! TTGAGACGAGGTTTTGATCC+CGG + chr7_1:59079348-59079367 None:intergenic 45.0%
GGAAATAAAGGATGAGTGCG+TGG - chr7_1:59079570-59079589 Msa1026870:CDS 45.0%
CCATGGCACATATAACTCTC+TGG + chr7_1:59079639-59079658 None:intergenic 45.0%
CCAGAGAGTTATATGTGCCA+TGG - chr7_1:59079636-59079655 Msa1026870:CDS 45.0%
TATGTGCCATGGGAAGAATG+GGG - chr7_1:59079647-59079666 Msa1026870:CDS 45.0%
! AGCTTTTGTCTGTTGGCATG+AGG + chr7_1:59079828-59079847 None:intergenic 45.0%
CTCAAGTCTACATGGAATGG+TGG + chr7_1:59079911-59079930 None:intergenic 45.0%
CTTATACCATCTCTGCAGAG+TGG - chr7_1:59079982-59080001 Msa1026870:CDS 45.0%
! TTTCTTGCTGCGGATTGAAG+AGG - chr7_1:59080050-59080069 Msa1026870:intron 45.0%
GACTACGGATATGAATCCGA+TGG - chr7_1:59080084-59080103 Msa1026870:intron 45.0%
GGATATGAATCCGATGGGAT+TGG - chr7_1:59080090-59080109 Msa1026870:intron 45.0%
!! TCCGATGGGATTGGTTCTAA+TGG - chr7_1:59080099-59080118 Msa1026870:intron 45.0%
AGCGCAACTGCTCAAAATAC+AGG + chr7_1:59080604-59080623 None:intergenic 45.0%
AGAGAATCGAGAACTGAAGC+TGG - chr7_1:59080736-59080755 Msa1026870:intron 45.0%
TGCAATTCTTCCTATCCCCT+TGG + chr7_1:59080873-59080892 None:intergenic 45.0%
ATTGCAGGGACTATGAAGAG+TGG + chr7_1:59081141-59081160 None:intergenic 45.0%
CTGGAATCGTCTTAGATTGC+AGG + chr7_1:59081156-59081175 None:intergenic 45.0%
ACACCTCCATTCCTTTCTGT+TGG - chr7_1:59081276-59081295 Msa1026870:five_prime_UTR 45.0%
! AACTTGCTCCTTAGGTTGCT+AGG - chr7_1:59081329-59081348 Msa1026870:five_prime_UTR 45.0%
GTACGGATGATTGCAGGTTC+AGG + chr7_1:59077854-59077873 None:intergenic 50.0%
CCTCAGGGAAAAACCTGTGT+TGG + chr7_1:59078435-59078454 None:intergenic 50.0%
! CCAACACAGGTTTTTCCCTG+AGG - chr7_1:59078432-59078451 Msa1026870:CDS 50.0%
CTTCCCACTTAGGGTAACCA+AGG + chr7_1:59079134-59079153 None:intergenic 50.0%
CTTCCGGATCTTCCCACTTA+GGG + chr7_1:59079143-59079162 None:intergenic 50.0%
TCTTCCGGATCTTCCCACTT+AGG + chr7_1:59079144-59079163 None:intergenic 50.0%
AAGTGGGAAGATCCGGAAGA+TGG - chr7_1:59079144-59079163 Msa1026870:CDS 50.0%
TGGCTTCAGCAACCATCTTC+CGG + chr7_1:59079159-59079178 None:intergenic 50.0%
GATGGTTGCTGAAGCCAACA+AGG - chr7_1:59079162-59079181 Msa1026870:CDS 50.0%
! GAGCTTCCCAATTTTCCAGG+AGG - chr7_1:59079205-59079224 Msa1026870:CDS 50.0%
CTGGTGTCCTCCTGGAAAAT+TGG + chr7_1:59079215-59079234 None:intergenic 50.0%
TCAAATGTCTGGTGTCCTCC+TGG + chr7_1:59079223-59079242 None:intergenic 50.0%
ACTCAGCTGCACAACGTAGT+CGG + chr7_1:59079303-59079322 None:intergenic 50.0%
TAAAGGATGAGTGCGTGGCA+TGG - chr7_1:59079575-59079594 Msa1026870:CDS 50.0%
ATGTGCCATGGGAAGAATGG+GGG - chr7_1:59079648-59079667 Msa1026870:CDS 50.0%
TCTAACCCCCATTCTTCCCA+TGG + chr7_1:59079656-59079675 None:intergenic 50.0%
! TGGAGACTCCTTGTTTGACG+TGG - chr7_1:59080002-59080021 Msa1026870:CDS 50.0%
! GCGGATTGAAGAGGAAGAAG+CGG - chr7_1:59080059-59080078 Msa1026870:intron 50.0%
GAGGAAGAAGCGGAAGACTA+CGG - chr7_1:59080069-59080088 Msa1026870:intron 50.0%
ACCATGCTGCACAGAATGAC+AGG - chr7_1:59080552-59080571 Msa1026870:intron 50.0%
ACTTGTACCACCATCTGCAG+TGG + chr7_1:59080581-59080600 None:intergenic 50.0%
GCGCTTGAAAAATGCCGTGT+CGG - chr7_1:59080619-59080638 Msa1026870:intron 50.0%
CGCTTGAAAAATGCCGTGTC+GGG - chr7_1:59080620-59080639 Msa1026870:intron 50.0%
GCTTGAAAAATGCCGTGTCG+GGG - chr7_1:59080621-59080640 Msa1026870:intron 50.0%
GTAGTTGTCCCTAGGAGACA+TGG + chr7_1:59080702-59080721 None:intergenic 50.0%
AGTGATGCGTAGTTGTCCCT+AGG + chr7_1:59080710-59080729 None:intergenic 50.0%
ACCTCTCTTTCCAAGGGGAT+AGG - chr7_1:59080860-59080879 Msa1026870:intron 50.0%
TCCTATCCCCTTGGAAAGAG+AGG + chr7_1:59080864-59080883 None:intergenic 50.0%
TAGGAAGTCTAGGGGAACAG+AGG - chr7_1:59080934-59080953 Msa1026870:intron 50.0%
AGGAAGTCTAGGGGAACAGA+GGG - chr7_1:59080935-59080954 Msa1026870:intron 50.0%
AGGGGAACAGAGGGGAAAAA+TGG - chr7_1:59080944-59080963 Msa1026870:intron 50.0%
GAACAGAGGGGAAAAATGGC+AGG - chr7_1:59080948-59080967 Msa1026870:intron 50.0%
AGGGGAAAAATGGCAGGAGT+AGG - chr7_1:59080954-59080973 Msa1026870:intron 50.0%
! AGAGACACTGCTTGTTGCAG+TGG - chr7_1:59081184-59081203 Msa1026870:five_prime_UTR 50.0%
TTGTTGCAGTGGCTACCAAC+AGG - chr7_1:59081195-59081214 Msa1026870:five_prime_UTR 50.0%
ACGCCAACAGAAAGGAATGG+AGG + chr7_1:59081282-59081301 None:intergenic 50.0%
AGGACGCCAACAGAAAGGAA+TGG + chr7_1:59081285-59081304 None:intergenic 50.0%
! GCTCCTTAGGTTGCTAGGAA+AGG - chr7_1:59081334-59081353 Msa1026870:five_prime_UTR 50.0%
GCAGACACACCTCAGACACA+AGG - chr7_1:59077956-59077975 Msa1026870:three_prime_UTR 55.0%
GACACACCTCAGACACAAGG+AGG - chr7_1:59077959-59077978 Msa1026870:three_prime_UTR 55.0%
GCTCTTCCTCCTTGTGTCTG+AGG + chr7_1:59077968-59077987 None:intergenic 55.0%
CTCAGCTGCACAACGTAGTC+GGG + chr7_1:59079302-59079321 None:intergenic 55.0%
GAGTCTCCACTCTGCAGAGA+TGG + chr7_1:59079991-59080010 None:intergenic 55.0%
GCACCTCTTTCCCTCTGTTC+AGG - chr7_1:59080448-59080467 Msa1026870:CDS 55.0%
GCTGTATGGGCCTGAACAGA+GGG + chr7_1:59080461-59080480 None:intergenic 55.0%
TGCTGTATGGGCCTGAACAG+AGG + chr7_1:59080462-59080481 None:intergenic 55.0%
GCCTGTCATTCTGTGCAGCA+TGG + chr7_1:59080556-59080575 None:intergenic 55.0%
TGACAGGCTTCCACTGCAGA+TGG - chr7_1:59080568-59080587 Msa1026870:intron 55.0%
ATCTCCTGAACTCCCCGACA+CGG + chr7_1:59080636-59080655 None:intergenic 55.0%
TGTCGGGGAGTTCAGGAGAT+GGG - chr7_1:59080636-59080655 Msa1026870:intron 55.0%
CTAGGAGACATGGCTGCACT+CGG + chr7_1:59080692-59080711 None:intergenic 55.0%
GAGTGCAGCCATGTCTCCTA+GGG - chr7_1:59080691-59080710 Msa1026870:intron 55.0%
GGGACAACTACGCATCACTG+CGG - chr7_1:59080711-59080730 Msa1026870:intron 55.0%
! GAGGCTGAGTGAGTTGGAGA+AGG - chr7_1:59080778-59080797 Msa1026870:intron 55.0%
GGAAGTCTAGGGGAACAGAG+GGG - chr7_1:59080936-59080955 Msa1026870:intron 55.0%
GCAGTGTCTCTGTGTGCATC+TGG + chr7_1:59081175-59081194 None:intergenic 55.0%
! GGTGTTATGCCTCTGCGACT+AGG + chr7_1:59081261-59081280 None:intergenic 55.0%
AGGATGAGTGCGTGGCATGG+TGG - chr7_1:59079578-59079597 Msa1026870:CDS 60.0%
GGGCCTGAACAGAGGGAAAG+AGG + chr7_1:59080454-59080473 None:intergenic 60.0%
CAGGCTTCCACTGCAGATGG+TGG - chr7_1:59080571-59080590 Msa1026870:intron 60.0%
AATGCCGTGTCGGGGAGTTC+AGG - chr7_1:59080629-59080648 Msa1026870:intron 60.0%
GTGTCGGGGAGTTCAGGAGA+TGG - chr7_1:59080635-59080654 Msa1026870:intron 60.0%
CGAGTGCAGCCATGTCTCCT+AGG - chr7_1:59080690-59080709 Msa1026870:intron 60.0%
GAGGGTGAGGCTGAGTGAGT+TGG - chr7_1:59080772-59080791 Msa1026870:intron 60.0%
GGAGAATGGCCTAGTCGCAG+AGG - chr7_1:59081249-59081268 Msa1026870:five_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 59077740 59081455 59077740 ID=Msa1026870;Name=Msa1026870
chr7_1 mRNA 59077740 59081455 59077740 ID=Msa1026870-mRNA-1;Parent=Msa1026870;Name=Msa1026870-mRNA-1;_AED=0.02;_eAED=0.02;_QI=310|1|1|1|1|1|4|461|612
chr7_1 exon 59077740 59078725 59077740 ID=Msa1026870-mRNA-1:exon:11906;Parent=Msa1026870-mRNA-1
chr7_1 exon 59078905 59080068 59078905 ID=Msa1026870-mRNA-1:exon:11905;Parent=Msa1026870-mRNA-1
chr7_1 exon 59080410 59080476 59080410 ID=Msa1026870-mRNA-1:exon:11904;Parent=Msa1026870-mRNA-1
chr7_1 exon 59081063 59081455 59081063 ID=Msa1026870-mRNA-1:exon:11903;Parent=Msa1026870-mRNA-1
chr7_1 five_prime_UTR 59081146 59081455 59081146 ID=Msa1026870-mRNA-1:five_prime_utr;Parent=Msa1026870-mRNA-1
chr7_1 CDS 59081063 59081145 59081063 ID=Msa1026870-mRNA-1:cds;Parent=Msa1026870-mRNA-1
chr7_1 CDS 59080410 59080476 59080410 ID=Msa1026870-mRNA-1:cds;Parent=Msa1026870-mRNA-1
chr7_1 CDS 59078905 59080068 59078905 ID=Msa1026870-mRNA-1:cds;Parent=Msa1026870-mRNA-1
chr7_1 CDS 59078201 59078725 59078201 ID=Msa1026870-mRNA-1:cds;Parent=Msa1026870-mRNA-1
chr7_1 three_prime_UTR 59077740 59078200 59077740 ID=Msa1026870-mRNA-1:three_prime_utr;Parent=Msa1026870-mRNA-1
Gene Sequence

>Msa1026870

ATGGTTTCCGAAAACTCACTCTCTTCTTCTAAGCACTCTTCCACTACCACTACTCCTAAATTTTGCAACTCTTACACTACTAGGATTTTCGCTGATGTTGCTGGTGACATTACAATTGTTGTTGATGGGGAGTCATTTCTGCTACATAAGTTTCCCTTGGTTACCCTAAGTGGGAAGATCCGGAAGATGGTTGCTGAAGCCAACAAGGGTTCCAGTGTTTCAAACTTGGAGCTTCCCAATTTTCCAGGAGGACACCAGACATTTGAACTTGCGATGAAGTTCTGTTATGGTATGAATTTTGAGATAACAACATTTAATGTTGCCCGACTACGTTGTGCAGCTGAGTACCTAGAAATGACAGAAGAATACCGGGATCAAAACCTCGTCTCAAGAACAGATATTTATCTGAATGAGATTGTCTTTCAAAATCTTCAGAGGTCAGTGGAAGTTCTATCAACCTGTGAGATGTTACCTCTAAATATAGTGGAGGAGATAGAAATCACAAAAGGATCTGTGGAAGCTATTGCAATGAATGCTTGCAAAGAGCAATTAGTTTCTGGTTTATCTAAATTACACTGTGATGGTGAATCTAAGGAAATAAAGGATGAGTGCGTGGCATGGTGGATTGAAGATCTCTCGATACTGCGTATTGATTTCTACCAGAGAGTTATATGTGCCATGGGAAGAATGGGGGTTAGATCAGACAATATTATTGCTTCACTGATGCATTATGCTCAAACATCACTGAAGGGTATTGGGAAGTGTCAATTATGGAATCAATCAAGGACAAATTCAAGTCCAACTACTATAGAAAAGGACCAGAGGACAATTGTAGAAACTATTGTCAACCTCATGCCAACAGACAAAAGCTCTTCCATTATGCCCTTGACTTTCTTGTTTGGCATGTTAAAGATGGCTATCATGTTAGGTGCCACCATTCCATGTAGACTTGAGCTTGAAAGAAGGATATCATTAAGGTTGGAAATGGTTTCACTTGATGATCTTCTTATACCATCTCTGCAGAGTGGAGACTCCTTGTTTGACGTGGATACAGTTCATAGGCTACTAGAGAATTTCTTGCTGCGGATTGAAGAGGAAGAAGCGGAAGACTACGGATATGAATCCGATGGGATTGGTTCTAATGGACATAGTTCTCTGCTAAAAGTAGGTCAGCTTATTGATGCTTTTTTAGCAGAAATTGCTCCTGATCCTTGCTTAAGTTTACAGAAATTCATCGCTTTGATTGAGATACTTCCTGATTATACTCGTGTCATTGATGATGGTCTTTATAGAGCCGTCGACATTTATTTGAAGGCCCATACAGCATTAACAGAACAAGAATGCAAGAAACTTTGCAAGTTTATAGACTGTCAGAAGCTGTCACAAGAAGCATGCAACCATGCTGCACAGAATGACAGGCTTCCACTGCAGATGGTGGTACAAGTCCTGTATTTTGAGCAGTTGCGCTTGAAAAATGCCGTGTCGGGGAGTTCAGGAGATGGGCTGCTATCACAGAGAATAAGTAGCGGTGTTCCGAGTGCAGCCATGTCTCCTAGGGACAACTACGCATCACTGCGGAGAGAGAATCGAGAACTGAAGCTGGAGATTTCAAGATTGAGGGTGAGGCTGAGTGAGTTGGAGAAGGAGCAAATGTTCATGAAACAAGGCATGATTGATAAAGCAGAAAATGGAAAAACTTTCTTTACCTCTCTTTCCAAGGGGATAGGAAGAATTGCAAATTTTAGCAGTCAAGGTGGAGGAAATCGCCAAAAAGCAAGTAGGAAGTCTAGGGGAACAGAGGGGAAAAATGGCAGGAGTAGGAGATATTCTCTCTCATAG
Protein sequence

>Msa1026870

MVSENSLSSSKHSSTTTTPKFCNSYTTRIFADVAGDITIVVDGESFLLHKFPLVTLSGKIRKMVAEANKGSSVSNLELPNFPGGHQTFELAMKFCYGMNFEITTFNVARLRCAAEYLEMTEEYRDQNLVSRTDIYLNEIVFQNLQRSVEVLSTCEMLPLNIVEEIEITKGSVEAIAMNACKEQLVSGLSKLHCDGESKEIKDECVAWWIEDLSILRIDFYQRVICAMGRMGVRSDNIIASLMHYAQTSLKGIGKCQLWNQSRTNSSPTTIEKDQRTIVETIVNLMPTDKSSSIMPLTFLFGMLKMAIMLGATIPCRLELERRISLRLEMVSLDDLLIPSLQSGDSLFDVDTVHRLLENFLLRIEEEEAEDYGYESDGIGSNGHSSLLKVGQLIDAFLAEIAPDPCLSLQKFIALIEILPDYTRVIDDGLYRAVDIYLKAHTALTEQECKKLCKFIDCQKLSQEACNHAAQNDRLPLQMVVQVLYFEQLRLKNAVSGSSGDGLLSQRISSGVPSAAMSPRDNYASLRRENRELKLEISRLRVRLSELEKEQMFMKQGMIDKAENGKTFFTSLSKGIGRIANFSSQGGGNRQKASRKSRGTEGKNGRSRRYSLS*