AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1027730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1027730 MtrunA17_Chr7g0246961 95.612 547 14 2 1 537 1 547 0.0 1067
Msa1027730 MtrunA17_Chr4g0042701 28.302 318 162 12 2 308 49 311 4.83e-15 77.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1027730 AT1G01920.2 61.818 550 187 7 1 533 3 546 0.0 677
Msa1027730 AT1G01920.1 59.826 575 183 9 1 533 3 571 0.0 664
Msa1027730 AT1G01920.5 61.538 507 177 6 1 490 3 508 0.0 620
Msa1027730 AT1G01920.4 61.677 501 171 6 48 533 8 502 0.0 618
Msa1027730 AT1G01920.3 63.869 429 137 6 5 416 7 434 0.0 548
Msa1027730 AT1G14030.1 25.566 309 154 12 8 300 49 297 6.21e-11 65.1

Find 113 sgRNAs with CRISPR-Local

Find 363 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCACTGCATTTAAGGTTAA+TGG 0.142609 7_1:-60286227 Msa1027730:intron
CTAGGGCAAATTCAGTATTT+TGG 0.177551 7_1:-60289337 Msa1027730:intron
CTCATTGTCAATTCAGTTCT+TGG 0.200060 7_1:-60285747 Msa1027730:three_prime_UTR
GTCTCTATGTATCTTCTTTC+CGG 0.208032 7_1:-60288526 Msa1027730:intron
TCCATTATCTAGCAGAGTTT+TGG 0.240722 7_1:+60287236 None:intergenic
GATATGCTTCCAACCACTTT+TGG 0.251963 7_1:-60290752 Msa1027730:CDS
TGGGAGGTTTGCGGTGATTC+TGG 0.254285 7_1:-60286538 Msa1027730:CDS
TCCCTTGTTGCCATAACTAA+TGG 0.277594 7_1:+60288292 None:intergenic
CATACTGTTTGCTATCTTCC+TGG 0.278315 7_1:+60286134 None:intergenic
CCCAAAACTCTGCTAGATAA+TGG 0.281902 7_1:-60287237 Msa1027730:CDS
AAAGTTTCGAGCTTTGCTTC+TGG 0.300512 7_1:+60291868 None:intergenic
TCAACTTCCCATGTTGCTAT+TGG 0.310003 7_1:+60288577 None:intergenic
GATAATTGTCTCTCCCCTTC+AGG 0.314552 7_1:+60286586 None:intergenic
TATAATTCTTATACTCTATT+CGG 0.319903 7_1:-60285642 Msa1027730:three_prime_UTR
CGAGAAATTTCCATTAGTTA+TGG 0.330983 7_1:-60288302 Msa1027730:CDS
ATGGACCTTGAAGAGCATTC+TGG 0.342337 7_1:-60286208 Msa1027730:CDS
CTGTTCCAGAATGCTCTTCA+AGG 0.349550 7_1:+60286203 None:intergenic
AAGTTTCGAGCTTTGCTTCT+GGG 0.351126 7_1:+60291869 None:intergenic
CTGTATGGTTTCGTCATTGA+TGG 0.361585 7_1:-60287633 Msa1027730:CDS
TTCTGTCACATGAAGCTTGT+TGG 0.362729 7_1:-60286610 Msa1027730:intron
ATATCGTGCAACTGAATTAC+AGG 0.370351 7_1:-60290675 Msa1027730:intron
CAGTGCAAGGAGACACTGTT+TGG 0.372176 7_1:-60288994 Msa1027730:CDS
TAGATGTCCAGTCAGCAATA+TGG 0.372524 7_1:-60286558 Msa1027730:CDS
TGATTGCTTCTGAAGGATAA+TGG 0.373461 7_1:+60287474 None:intergenic
ACAAAGTTTGCAACTATAGT+TGG 0.373492 7_1:-60287167 Msa1027730:CDS
TGTGCTGTGTGTGGTTTCCT+TGG 0.380688 7_1:+60289015 None:intergenic
GGAGACACTGTTTGGGTTGA+GGG 0.388987 7_1:-60288986 Msa1027730:CDS
AACTTTCTTGCAGTGGCTAC+AGG 0.393679 7_1:-60291851 Msa1027730:intron
TGGGTTGAGGGTCTTGTCCC+TGG 0.398663 7_1:-60288974 Msa1027730:CDS
TGATGAACATCTTGCATCTC+AGG 0.399499 7_1:+60289272 None:intergenic
AAGTACTGTGATTCCAGAAA+AGG 0.405051 7_1:-60291660 Msa1027730:CDS
CTTCCTGGCTATCAATGATA+AGG 0.405078 7_1:+60286149 None:intergenic
GGATCTTGCAATACCCTCAT+TGG 0.414764 7_1:+60290978 None:intergenic
CCAAAGTGTATTTCCAAAAG+TGG 0.431664 7_1:+60290739 None:intergenic
CAGGAACTTCTATATCTGTA+TGG 0.433043 7_1:-60287648 Msa1027730:CDS
AGGAGACACTGTTTGGGTTG+AGG 0.441525 7_1:-60288987 Msa1027730:CDS
TAGTTTCATACAAATTCAAC+AGG 0.442700 7_1:+60289942 None:intergenic
AGATGTCCAGTCAGCAATAT+GGG 0.462315 7_1:-60286557 Msa1027730:CDS
GGCCCTTATCATTGATAGCC+AGG 0.463013 7_1:-60286152 Msa1027730:CDS
GTTTGCGCAAGGATTCTCTA+TGG 0.464632 7_1:-60290872 Msa1027730:CDS
ACAAGCTTGTCTACATAAGA+TGG 0.465464 7_1:+60287126 None:intergenic
GATGGAACTGGCTTAACAAC+AGG 0.466483 7_1:-60288556 Msa1027730:CDS
TTCCTGGCTATCAATGATAA+GGG 0.467148 7_1:+60286150 None:intergenic
ACATGGGAAGTTGATGGAAC+TGG 0.472230 7_1:-60288568 Msa1027730:CDS
CTCATCCTCTTGCATGGCTA+TGG 0.472389 7_1:+60287071 None:intergenic
ACAATGTGACATGGTTATCA+AGG 0.476735 7_1:+60285815 None:intergenic
TGTGATTCCAGAAAAGGGTT+TGG 0.479557 7_1:-60291654 Msa1027730:CDS
ATGAAGCTTGTTGGACCTGA+AGG 0.484251 7_1:-60286601 Msa1027730:intron
TCAAACAATGCTCTACATTC+CGG 0.484562 7_1:+60290945 None:intergenic
CTACATTCCGGTCCTAGAAA+AGG 0.484582 7_1:+60290957 None:intergenic
AGTACTGTGATTCCAGAAAA+GGG 0.485791 7_1:-60291659 Msa1027730:CDS
AGTGTATTTCCAAAAGTGGT+TGG 0.489103 7_1:+60290743 None:intergenic
AAGGTAGCCATAAATTTCTC+AGG 0.491005 7_1:+60287099 None:intergenic
ATAGCAACATGGGAAGTTGA+TGG 0.495904 7_1:-60288574 Msa1027730:CDS
TGACTTTGAATTGCTCAAGA+AGG 0.498742 7_1:-60286173 Msa1027730:CDS
AAGCCAGCTTCTTGAAGTGC+AGG 0.498998 7_1:-60287426 Msa1027730:intron
ACCACACACAGCACAGTGCA+AGG 0.499409 7_1:-60289007 Msa1027730:CDS
TACACTTTGGTTTAGTGAAG+AGG 0.503980 7_1:-60290726 Msa1027730:CDS
GAATGTAGAGCATTGTTTGA+AGG 0.509677 7_1:-60290942 Msa1027730:CDS
TCTAACTTGGACTAAAGATC+AGG 0.510257 7_1:+60285776 None:intergenic
AGTGCAAGGAGACACTGTTT+GGG 0.515525 7_1:-60288993 Msa1027730:CDS
TGATTGCAAAAGTCAATGCC+AGG 0.518483 7_1:+60288956 None:intergenic
GGAGTAATTGATAATTCTAG+TGG 0.523042 7_1:+60290999 None:intergenic
CATTGATGTCTAGAAACAAA+TGG 0.527412 7_1:-60285940 Msa1027730:CDS
TCCATTAGTTATGGCAACAA+GGG 0.530233 7_1:-60288293 Msa1027730:CDS
TTGCATGGCTATGGTTCTCA+AGG 0.534689 7_1:+60287080 None:intergenic
AGTTTACATGATTATTCGAA+GGG 0.537196 7_1:-60285723 Msa1027730:three_prime_UTR
AGCTCGAAACTTTCTTGCAG+TGG 0.538099 7_1:-60291858 Msa1027730:CDS
GACAGTGGAGCGTTTGCGCA+AGG 0.539091 7_1:-60290883 Msa1027730:CDS
ATACCTGCACTTCAAGAAGC+TGG 0.540029 7_1:+60287423 None:intergenic
TTCCATTAGTTATGGCAACA+AGG 0.540060 7_1:-60288294 Msa1027730:CDS
TGAAGAGCATTCTGGAACAG+AGG 0.546626 7_1:-60286200 Msa1027730:CDS
TCCTTGCACTGTGCTGTGTG+TGG 0.554281 7_1:+60289006 None:intergenic
ACTCCAAAAGCTGATGAAAA+CGG 0.554851 7_1:-60289242 Msa1027730:intron
CAGTTTACATGATTATTCGA+AGG 0.559107 7_1:-60285724 Msa1027730:three_prime_UTR
GAGGAACTTCAAGAGCTAAG+AGG 0.559109 7_1:-60290707 Msa1027730:CDS
TTGAATTCAGGCAAATGGGG+TGG 0.561077 7_1:-60291703 Msa1027730:intron
CGCAAATCAAGAGGTAGCAA+TGG 0.561397 7_1:-60291896 Msa1027730:exon
AAGTGGTTGGAAGCATATCA+AGG 0.561594 7_1:+60290756 None:intergenic
TGAAGCTTGTTGGACCTGAA+GGG 0.564184 7_1:-60286600 Msa1027730:intron
TTATGGCAACAAGGGAAATG+AGG 0.564716 7_1:-60288285 Msa1027730:intron
ATAGTATTGATTGCTTCTGA+AGG 0.567549 7_1:+60287467 None:intergenic
TTGAAGGAGATGTAGATGAC+AGG 0.571307 7_1:-60290926 Msa1027730:CDS
TCAGCAATATGGGAGGTTTG+CGG 0.572266 7_1:-60286547 Msa1027730:CDS
ATTATCAATTACTCCAATGA+GGG 0.574443 7_1:-60290991 Msa1027730:CDS
TTTGTATGAAACTAAAGTGA+AGG 0.575323 7_1:-60289933 Msa1027730:CDS
ATCTGAAGCCAATAGCAACA+TGG 0.576295 7_1:-60288585 Msa1027730:CDS
GAAAGAAGATACATAGAGAC+GGG 0.578087 7_1:+60288529 None:intergenic
AATGATGTTGTTATTGACAG+TGG 0.579816 7_1:-60290898 Msa1027730:CDS
TCAGGAAATACATAAGAACT+AGG 0.580619 7_1:+60289290 None:intergenic
AATACATAAGAACTAGGCAA+TGG 0.581027 7_1:+60289296 None:intergenic
TGTGATAAAGATGTTTCTGA+TGG 0.581741 7_1:-60291624 Msa1027730:intron
GAAGCTTGTTGGACCTGAAG+GGG 0.592425 7_1:-60286599 Msa1027730:intron
GAAAAGCTCATCCTCTTGCA+TGG 0.596233 7_1:+60287065 None:intergenic
GTTTGCAACTATAGTTGGAG+TGG 0.596685 7_1:-60287162 Msa1027730:CDS
AAACCTCCCATATTGCTGAC+TGG 0.603393 7_1:+60286551 None:intergenic
TCTGAAGCCAATAGCAACAT+GGG 0.609278 7_1:-60288584 Msa1027730:CDS
AATTATCAATTACTCCAATG+AGG 0.609295 7_1:-60290992 Msa1027730:CDS
ATTTCTCGATCAATCTGCAA+GGG 0.618905 7_1:+60288317 None:intergenic
AATTTCTCGATCAATCTGCA+AGG 0.619449 7_1:+60288316 None:intergenic
CAAAGTAGGCGCAAATCAAG+AGG 0.619679 7_1:-60291905 Msa1027730:five_prime_UTR
GAGAACCATAGCCATGCAAG+AGG 0.619836 7_1:-60287076 Msa1027730:CDS
GGAAAGAAGATACATAGAGA+CGG 0.629227 7_1:+60288528 None:intergenic
GCAATGGAGTGTTCAAAGCA+CGG 0.636367 7_1:+60289312 None:intergenic
CAGAATGGTAAATGACTCAG+AGG 0.637679 7_1:-60285969 Msa1027730:CDS
GGTTTCGTCAATGCTAGAAG+AGG 0.649846 7_1:-60287040 Msa1027730:intron
GATTGCAAAAGTCAATGCCA+GGG 0.652587 7_1:+60288957 None:intergenic
TAACACAGATGACTACCTCA+TGG 0.656026 7_1:-60287610 Msa1027730:intron
AAGAACTTTACAATGTGACA+TGG 0.672070 7_1:+60285806 None:intergenic
AAAATCTGACGATCTAACCA+AGG 0.681796 7_1:-60289032 Msa1027730:CDS
GCAAATGGGGTGGAGCTACG+AGG 0.694142 7_1:-60291693 Msa1027730:CDS
TCTGCTATTGTATATAGACG+AGG 0.714826 7_1:-60285917 Msa1027730:CDS
TGTCCAGTCAGCAATATGGG+AGG 0.717026 7_1:-60286554 Msa1027730:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTATTTTATTTTACTTTA+TGG - chr7_1:60286761-60286780 Msa1027730:intron 10.0%
!!! AGAATGTTTTTTAAAATTTT+GGG + chr7_1:60287077-60287096 None:intergenic 10.0%
!!! AAGAATGTTTTTTAAAATTT+TGG + chr7_1:60287078-60287097 None:intergenic 10.0%
!! TTAAAATTGATATTAAAGTA+AGG - chr7_1:60288514-60288533 Msa1027730:intron 10.0%
!!! TCATATAAAAAGTATATAAA+GGG + chr7_1:60288762-60288781 None:intergenic 10.0%
!!! ATCATATAAAAAGTATATAA+AGG + chr7_1:60288763-60288782 None:intergenic 10.0%
!! TACTTTGACAATAAAAAAAA+TGG + chr7_1:60285678-60285697 None:intergenic 15.0%
!!! ATTTTTTTTATTGTCAAAGT+AGG - chr7_1:60285677-60285696 Msa1027730:three_prime_UTR 15.0%
!!! AAAATTGTTTTCAAAAAGTA+AGG + chr7_1:60286481-60286500 None:intergenic 15.0%
!!! TTTGTTTTTCTTTGAAAAAA+AGG - chr7_1:60286558-60286577 Msa1027730:CDS 15.0%
!!! TTGTTTTTCTTTGAAAAAAA+GGG - chr7_1:60286559-60286578 Msa1027730:CDS 15.0%
!! AATAAAATAAACCATACATA+CGG + chr7_1:60286753-60286772 None:intergenic 15.0%
!!! AAATTAACTATTTTTACTCA+AGG + chr7_1:60287150-60287169 None:intergenic 15.0%
!!! TTTTTAAGTTTATACATTCA+AGG - chr7_1:60287998-60288017 Msa1027730:intron 15.0%
!! AAAAATCAGTGAAATATAAA+CGG + chr7_1:60288490-60288509 None:intergenic 15.0%
!!! CATATAAAAAGTATATAAAG+GGG + chr7_1:60288761-60288780 None:intergenic 15.0%
!! ATTAATGACCAATATTTATA+AGG + chr7_1:60288812-60288831 None:intergenic 15.0%
!!! TTTCTTACTTAATTTCATTT+TGG - chr7_1:60289158-60289177 Msa1027730:intron 15.0%
!! AAGAAAAACAATGAATTAAA+GGG + chr7_1:60289238-60289257 None:intergenic 15.0%
!! AATATATATATTTGATGTAC+AGG + chr7_1:60289540-60289559 None:intergenic 15.0%
!!! TTAGACACTAAATATATTTT+AGG + chr7_1:60291188-60291207 None:intergenic 15.0%
!! TATAATTCTTATACTCTATT+CGG - chr7_1:60291954-60291973 Msa1027730:five_prime_UTR 15.0%
!!! CATAGTTTTGAATTTTGATT+TGG - chr7_1:60285868-60285887 Msa1027730:CDS 20.0%
!! TGTACTAATATCAATATGAA+TGG - chr7_1:60286001-60286020 Msa1027730:intron 20.0%
!!! TTTTCATAAGCTCAAAAATA+AGG - chr7_1:60286258-60286277 Msa1027730:intron 20.0%
!! TTAAATTAGCAATAAAACAC+AGG + chr7_1:60286999-60287018 None:intergenic 20.0%
!!! GAGTAAAAATAGTTAATTTG+AGG - chr7_1:60287151-60287170 Msa1027730:CDS 20.0%
!!! TAAAAATAGTTAATTTGAGG+CGG - chr7_1:60287154-60287173 Msa1027730:CDS 20.0%
!! AGATTTATATTAGAAAACCT+AGG + chr7_1:60287462-60287481 None:intergenic 20.0%
!!! TTTTCTAATATAAATCTCCA+TGG - chr7_1:60287465-60287484 Msa1027730:CDS 20.0%
!!! TTCTAGTTTATGTTTTTAAG+TGG - chr7_1:60287765-60287784 Msa1027730:intron 20.0%
!!! CGTTTGATTTAAATATTGTT+AGG - chr7_1:60287834-60287853 Msa1027730:intron 20.0%
!! TTATGTCAATCATGTTAATT+TGG - chr7_1:60287858-60287877 Msa1027730:intron 20.0%
!! TAGTATATTTAGTGCAATAA+TGG + chr7_1:60287958-60287977 None:intergenic 20.0%
!! ACTAAACACCTTATAAATAT+TGG - chr7_1:60288801-60288820 Msa1027730:intron 20.0%
!!! ATTTTATGAAACTACCTAAA+TGG + chr7_1:60289195-60289214 None:intergenic 20.0%
!! AGAAAAACAATGAATTAAAG+GGG + chr7_1:60289237-60289256 None:intergenic 20.0%
!! CAAGAAAAACAATGAATTAA+AGG + chr7_1:60289239-60289258 None:intergenic 20.0%
!!! CTTTAATTCATTGTTTTTCT+TGG - chr7_1:60289237-60289256 Msa1027730:intron 20.0%
!! TCATATCATATCATGTAAAT+AGG + chr7_1:60289508-60289527 None:intergenic 20.0%
!!! TTAGGTATAAATTTTAGTCT+TGG + chr7_1:60290039-60290058 None:intergenic 20.0%
!! TAAAGCTGAAGATAAATTAT+TGG + chr7_1:60290200-60290219 None:intergenic 20.0%
!!! AAATTCACTTTCTGTTATTT+TGG - chr7_1:60290300-60290319 Msa1027730:intron 20.0%
!!! CTATGCAACATTTTTTTTAA+TGG - chr7_1:60290587-60290606 Msa1027730:intron 20.0%
!!! GATGTATTTTTTATGCTATT+TGG - chr7_1:60290710-60290729 Msa1027730:CDS 20.0%
!! TATTTCTTCAATAAGTGAAA+TGG + chr7_1:60291287-60291306 None:intergenic 20.0%
!! TTTCACTTATTGAAGAAATA+AGG - chr7_1:60291287-60291306 Msa1027730:intron 20.0%
!! AAAAGAGTTTTACATCATCA+CGG - chr7_1:60285584-60285603 Msa1027730:three_prime_UTR 25.0%
!!! AAAAAAATGGTGATGGTTTA+AGG + chr7_1:60285665-60285684 None:intergenic 25.0%
! GACAATAAAAAAAATGGTGA+TGG + chr7_1:60285672-60285691 None:intergenic 25.0%
!! TAACTCTGGTTTGTAATTTA+AGG - chr7_1:60285773-60285792 Msa1027730:three_prime_UTR 25.0%
!!! TTAGCTTTTATACCATTCTT+TGG - chr7_1:60285814-60285833 Msa1027730:exon 25.0%
!!! TTTGATTTGGTTTTGAATTC+AGG - chr7_1:60285881-60285900 Msa1027730:CDS 25.0%
!!! TGAATGGATTTTATTGTAGT+TGG - chr7_1:60286017-60286036 Msa1027730:intron 25.0%
! TAAGTTATCACTAACGAAAA+TGG + chr7_1:60286200-60286219 None:intergenic 25.0%
!!! TGACTTTTTTTTTGCTTCAT+TGG + chr7_1:60286414-60286433 None:intergenic 25.0%
! ATAGCAATAAACACTATTCA+GGG + chr7_1:60286506-60286525 None:intergenic 25.0%
!! TTCTCTGTTTTCAAAAAGTA+AGG + chr7_1:60286532-60286551 None:intergenic 25.0%
! AATTATCAATTACTCCAATG+AGG - chr7_1:60286604-60286623 Msa1027730:intron 25.0%
! ATTATCAATTACTCCAATGA+GGG - chr7_1:60286605-60286624 Msa1027730:intron 25.0%
! TATTGCTAATTTAAAGATGC+TGG - chr7_1:60287005-60287024 Msa1027730:intron 25.0%
! TTGTTATATAGAGTCAATTG+CGG - chr7_1:60287310-60287329 Msa1027730:intron 25.0%
! ATTACATAAAAGCTAAACCT+AGG - chr7_1:60287442-60287461 Msa1027730:CDS 25.0%
!!! AACAAATTTAGGCTGTTTTA+CGG - chr7_1:60287538-60287557 Msa1027730:intron 25.0%
! TCAAATACTGCTAAATACAA+TGG + chr7_1:60287607-60287626 None:intergenic 25.0%
! TAGTTTCATACAAATTCAAC+AGG + chr7_1:60287657-60287676 None:intergenic 25.0%
! TTTGTATGAAACTAAAGTGA+AGG - chr7_1:60287663-60287682 Msa1027730:intron 25.0%
! AACGATGTCAAAATTTCAAT+AGG + chr7_1:60287818-60287837 None:intergenic 25.0%
!!! CAATCATGTTAATTTGGTTT+TGG - chr7_1:60287864-60287883 Msa1027730:intron 25.0%
! GTTTCAATTTATAATCCTGA+AGG + chr7_1:60288043-60288062 None:intergenic 25.0%
! TTTCAAACATACATTTACGA+TGG - chr7_1:60288102-60288121 Msa1027730:intron 25.0%
! TCACAATCAATGAAAAAACA+AGG + chr7_1:60288726-60288745 None:intergenic 25.0%
!! ATTTATAAGGTGTTTAGTGA+AGG + chr7_1:60288799-60288818 None:intergenic 25.0%
!! CAGTGAATTCGATTTTATAT+AGG - chr7_1:60289441-60289460 Msa1027730:intron 25.0%
!! TTGATAGCATCATAACATAT+TGG + chr7_1:60289584-60289603 None:intergenic 25.0%
! ATTCAAATTGACTGAACAAA+AGG - chr7_1:60289686-60289705 Msa1027730:intron 25.0%
! AACAAAAGGTTTAATAGAAC+TGG - chr7_1:60289700-60289719 Msa1027730:intron 25.0%
! ACAGAAAGTGAATTTACAAA+AGG + chr7_1:60290295-60290314 None:intergenic 25.0%
!!! ATTTTGGTTTTGTTTACAGA+AGG - chr7_1:60290316-60290335 Msa1027730:intron 25.0%
!! TGTTTTTCCTGAGAAATTTA+TGG - chr7_1:60290490-60290509 Msa1027730:intron 25.0%
! TATAGTTGTTAAGTAATTCC+TGG + chr7_1:60291127-60291146 None:intergenic 25.0%
! GTGAAAATATGAAAGCAATT+AGG + chr7_1:60291354-60291373 None:intergenic 25.0%
!! TCATATTTTCACTGCATTTA+AGG - chr7_1:60291362-60291381 Msa1027730:intron 25.0%
!! AGAAATGCAAGTTTTACTTA+AGG + chr7_1:60291546-60291565 None:intergenic 25.0%
! CAAAGACATCAATATATTGT+AGG + chr7_1:60291579-60291598 None:intergenic 25.0%
! CTCAAAGGAAATTAAGAAAA+AGG + chr7_1:60291607-60291626 None:intergenic 25.0%
! CAATGAGTAAAAATCTAACT+TGG + chr7_1:60291836-60291855 None:intergenic 25.0%
! AGTTTACATGATTATTCGAA+GGG - chr7_1:60291873-60291892 Msa1027730:CDS 25.0%
! AACTTTCCACACTAAAAAAT+TGG + chr7_1:60291909-60291928 None:intergenic 25.0%
!! ATTTTCACCCCAATTTTTAA+GGG + chr7_1:60291984-60292003 None:intergenic 25.0%
! GTTTGTAATTTAAGGCCTAA+TGG - chr7_1:60285781-60285800 Msa1027730:three_prime_UTR 30.0%
TTTGAAAACTCACCAAAGAA+TGG + chr7_1:60285829-60285848 None:intergenic 30.0%
! TCTTTGGTGAGTTTTCAAAA+TGG - chr7_1:60285830-60285849 Msa1027730:exon 30.0%
! TGTGATAAAGATGTTTCTGA+TGG - chr7_1:60285972-60285991 Msa1027730:intron 30.0%
CATAGCAATAAACACTATTC+AGG + chr7_1:60286507-60286526 None:intergenic 30.0%
TTGAAAAAAAGGGATTCTGT+TGG - chr7_1:60286569-60286588 Msa1027730:CDS 30.0%
! GGAGTAATTGATAATTCTAG+TGG + chr7_1:60286600-60286619 None:intergenic 30.0%
! AATGATGTTGTTATTGACAG+TGG - chr7_1:60286698-60286717 Msa1027730:intron 30.0%
TTGTAGTAAATAACGTATCG+TGG + chr7_1:60287286-60287305 None:intergenic 30.0%
! GTTGACTCTATATAACATTC+TGG + chr7_1:60287422-60287441 None:intergenic 30.0%
TATAAATCTCCATGGTGTAA+TGG - chr7_1:60287473-60287492 Msa1027730:CDS 30.0%
ATAAATCTCCATGGTGTAAT+GGG - chr7_1:60287474-60287493 Msa1027730:CDS 30.0%
!!! ATGACTTTTTTGAACCTTTC+AGG - chr7_1:60287513-60287532 Msa1027730:intron 30.0%
!! ACAAATTTAGGCTGTTTTAC+GGG - chr7_1:60287539-60287558 Msa1027730:intron 30.0%
! GATAGAAAGAATGTCATTTC+TGG - chr7_1:60287568-60287587 Msa1027730:intron 30.0%
!! AAGAAACTTTTGACTCTTGA+CGG - chr7_1:60287694-60287713 Msa1027730:intron 30.0%
!! AGATTCTAAGATGTATGTGT+TGG - chr7_1:60287717-60287736 Msa1027730:intron 30.0%
!! GATTCTAAGATGTATGTGTT+GGG - chr7_1:60287718-60287737 Msa1027730:intron 30.0%
AATACATAAGAACTAGGCAA+TGG + chr7_1:60288303-60288322 None:intergenic 30.0%
TCAGGAAATACATAAGAACT+AGG + chr7_1:60288309-60288328 None:intergenic 30.0%
AAGTAAGGAAGTTATATTGC+AGG - chr7_1:60288529-60288548 Msa1027730:CDS 30.0%
ATATCAGCTGTTTGATCATA+GGG + chr7_1:60288855-60288874 None:intergenic 30.0%
AATATCAGCTGTTTGATCAT+AGG + chr7_1:60288856-60288875 None:intergenic 30.0%
CATACATATACATGAATGTC+TGG - chr7_1:60288882-60288901 Msa1027730:intron 30.0%
ATTACCTTTCTTGCCATATA+CGG - chr7_1:60288921-60288940 Msa1027730:intron 30.0%
GTAAATCACATATTCTCATG+AGG + chr7_1:60288970-60288989 None:intergenic 30.0%
TGTGATTTACCTTGATTACA+TGG - chr7_1:60288980-60288999 Msa1027730:CDS 30.0%
! ACATTCTTTTTGTGCGTTTT+TGG - chr7_1:60289095-60289114 Msa1027730:intron 30.0%
CGAGAAATTTCCATTAGTTA+TGG - chr7_1:60289294-60289313 Msa1027730:CDS 30.0%
! ATGAGGTACTTTATATTCTG+TGG - chr7_1:60289328-60289347 Msa1027730:CDS 30.0%
ATGTTATGATGCTATCAAAG+AGG - chr7_1:60289586-60289605 Msa1027730:intron 30.0%
AGAACTGGATCCATAATTTA+CGG - chr7_1:60289715-60289734 Msa1027730:intron 30.0%
! TTTTATTGGCCCGTAAATTA+TGG + chr7_1:60289728-60289747 None:intergenic 30.0%
! ATGCCTTGATGGAATTTTAT+TGG + chr7_1:60289742-60289761 None:intergenic 30.0%
! GCTTATTTCAAGTGTTAACA+TGG - chr7_1:60289902-60289921 Msa1027730:CDS 30.0%
AGGAATGGAAGTAATATGTT+AGG + chr7_1:60290057-60290076 None:intergenic 30.0%
!! ATAGTATTGATTGCTTCTGA+AGG + chr7_1:60290132-60290151 None:intergenic 30.0%
GAAAGTGAATTTACAAAAGG+AGG + chr7_1:60290292-60290311 None:intergenic 30.0%
!!! GATAATGGATTTTTTCCATC+AGG - chr7_1:60290374-60290393 Msa1027730:intron 30.0%
!! GTTATTTTCTCCACTGTTTT+TGG + chr7_1:60290402-60290421 None:intergenic 30.0%
ACAAAGTTTGCAACTATAGT+TGG - chr7_1:60290429-60290448 Msa1027730:intron 30.0%
AGTAGACAAGTGATGAAAAA+GGG + chr7_1:60290684-60290703 None:intergenic 30.0%
TATTTGATTATGCCAGTAGA+TGG - chr7_1:60290777-60290796 Msa1027730:intron 30.0%
TTTCAAAGACAAAATAGACC+TGG - chr7_1:60290896-60290915 Msa1027730:CDS 30.0%
CAAATGAAAACATAATTGCC+AGG + chr7_1:60290917-60290936 None:intergenic 30.0%
! CTGGCAATTATGTTTTCATT+TGG - chr7_1:60290915-60290934 Msa1027730:CDS 30.0%
! TTCACTGCATTTAAGGTTAA+TGG - chr7_1:60291369-60291388 Msa1027730:intron 30.0%
TTAATTTCCTTTGAGCAGAA+TGG - chr7_1:60291612-60291631 Msa1027730:intron 30.0%
CATTGATGTCTAGAAACAAA+TGG - chr7_1:60291656-60291675 Msa1027730:CDS 30.0%
AAGAACTTTACAATGTGACA+TGG + chr7_1:60291793-60291812 None:intergenic 30.0%
CAGTTTACATGATTATTCGA+AGG - chr7_1:60291872-60291891 Msa1027730:CDS 30.0%
!!! TTAGCTCCAATTTTTTAGTG+TGG - chr7_1:60291900-60291919 Msa1027730:five_prime_UTR 30.0%
! CATTTTCACCCCAATTTTTA+AGG + chr7_1:60291985-60292004 None:intergenic 30.0%
! GCTAAACACGTTTTACCATT+AGG + chr7_1:60285799-60285818 None:intergenic 35.0%
!!! TGGTTTTGAATTCAGGCAAA+TGG - chr7_1:60285888-60285907 Msa1027730:CDS 35.0%
!!! GGTTTTGAATTCAGGCAAAT+GGG - chr7_1:60285889-60285908 Msa1027730:CDS 35.0%
!! GTTTTGAATTCAGGCAAATG+GGG - chr7_1:60285890-60285909 Msa1027730:CDS 35.0%
! AAGTACTGTGATTCCAGAAA+AGG - chr7_1:60285936-60285955 Msa1027730:CDS 35.0%
AGTACTGTGATTCCAGAAAA+GGG - chr7_1:60285937-60285956 Msa1027730:CDS 35.0%
! AAATATGCCAAACCCTTTTC+TGG + chr7_1:60285952-60285971 None:intergenic 35.0%
CAAAAATAAGGCAATCCGAA+CGG - chr7_1:60286270-60286289 Msa1027730:intron 35.0%
! GTATTGCAAGATCCTTTTCT+AGG - chr7_1:60286627-60286646 Msa1027730:intron 35.0%
TCAAACAATGCTCTACATTC+CGG + chr7_1:60286654-60286673 None:intergenic 35.0%
!! GAATGTAGAGCATTGTTTGA+AGG - chr7_1:60286654-60286673 Msa1027730:intron 35.0%
TTCAGAACTTCAGATTGTGT+TGG - chr7_1:60286784-60286803 Msa1027730:intron 35.0%
TCAGAACTTCAGATTGTGTT+GGG - chr7_1:60286785-60286804 Msa1027730:intron 35.0%
!! CTCACTTGTGGAATTTTAAC+AGG - chr7_1:60286815-60286834 Msa1027730:intron 35.0%
AGTGTATTTCCAAAAGTGGT+TGG + chr7_1:60286856-60286875 None:intergenic 35.0%
CCAAAGTGTATTTCCAAAAG+TGG + chr7_1:60286860-60286879 None:intergenic 35.0%
!! CCACTTTTGGAAATACACTT+TGG - chr7_1:60286857-60286876 Msa1027730:intron 35.0%
! TACACTTTGGTTTAGTGAAG+AGG - chr7_1:60286870-60286889 Msa1027730:intron 35.0%
ATATCGTGCAACTGAATTAC+AGG - chr7_1:60286921-60286940 Msa1027730:intron 35.0%
! GGTTTACTCAGATTGGTTAA+TGG + chr7_1:60286978-60286997 None:intergenic 35.0%
AAACACAGGTTTACTCAGAT+TGG + chr7_1:60286985-60287004 None:intergenic 35.0%
GCTAATTTAAAGATGCTGGT+TGG - chr7_1:60287009-60287028 Msa1027730:intron 35.0%
CCTCATATAACATTCTAGTG+TGG + chr7_1:60287391-60287410 None:intergenic 35.0%
CCACACTAGAATGTTATATG+AGG - chr7_1:60287388-60287407 Msa1027730:intron 35.0%
!!! GGTTTTGGAATTGAGAACTA+CGG - chr7_1:60287879-60287898 Msa1027730:intron 35.0%
!! TGTGCTTTGAAGATTTCCTT+TGG - chr7_1:60288158-60288177 Msa1027730:intron 35.0%
! TCACTAGAAGTACATACCAA+AGG + chr7_1:60288177-60288196 None:intergenic 35.0%
TATGACTTCAACTAACTCCT+TGG - chr7_1:60288210-60288229 Msa1027730:intron 35.0%
! CTAGGGCAAATTCAGTATTT+TGG - chr7_1:60288259-60288278 Msa1027730:intron 35.0%
ACTCCAAAAGCTGATGAAAA+CGG - chr7_1:60288354-60288373 Msa1027730:intron 35.0%
! TAACCGTTTTCATCAGCTTT+TGG + chr7_1:60288360-60288379 None:intergenic 35.0%
AAAATCTGACGATCTAACCA+AGG - chr7_1:60288564-60288583 Msa1027730:CDS 35.0%
TACATGAATGTCTGGATTTG+TGG - chr7_1:60288890-60288909 Msa1027730:intron 35.0%
ATCTACCATACTACCGTATA+TGG + chr7_1:60288937-60288956 None:intergenic 35.0%
GAAAGAAGATACATAGAGAC+GGG + chr7_1:60289070-60289089 None:intergenic 35.0%
GGAAAGAAGATACATAGAGA+CGG + chr7_1:60289071-60289090 None:intergenic 35.0%
GTCTCTATGTATCTTCTTTC+CGG - chr7_1:60289070-60289089 Msa1027730:intron 35.0%
ACGCACAAAAAGAATGTTAC+CGG + chr7_1:60289092-60289111 None:intergenic 35.0%
TGGTTTCTCTCTTTCCATTT+AGG - chr7_1:60289178-60289197 Msa1027730:intron 35.0%
ATTTCTCGATCAATCTGCAA+GGG + chr7_1:60289282-60289301 None:intergenic 35.0%
AATTTCTCGATCAATCTGCA+AGG + chr7_1:60289283-60289302 None:intergenic 35.0%
TTCCATTAGTTATGGCAACA+AGG - chr7_1:60289302-60289321 Msa1027730:CDS 35.0%
TCCATTAGTTATGGCAACAA+GGG - chr7_1:60289303-60289322 Msa1027730:CDS 35.0%
GAACTGGATCCATAATTTAC+GGG - chr7_1:60289716-60289735 Msa1027730:intron 35.0%
CTGCATCAAGTGGAAAAATA+TGG + chr7_1:60289931-60289950 None:intergenic 35.0%
! CATATTTTTCCACTTGATGC+AGG - chr7_1:60289929-60289948 Msa1027730:CDS 35.0%
CAGGAACTTCTATATCTGTA+TGG - chr7_1:60289948-60289967 Msa1027730:CDS 35.0%
!!! AAATTTTAGTCTTGGTGCAC+AGG + chr7_1:60290031-60290050 None:intergenic 35.0%
CAACAGAAACAACTAAGGAA+TGG + chr7_1:60290072-60290091 None:intergenic 35.0%
!! CATTCCTTAGTTGTTTCTGT+TGG - chr7_1:60290070-60290089 Msa1027730:intron 35.0%
CATACCAACAGAAACAACTA+AGG + chr7_1:60290077-60290096 None:intergenic 35.0%
! TGATTGCTTCTGAAGGATAA+TGG + chr7_1:60290125-60290144 None:intergenic 35.0%
! CCATTATCTAGCAGAGTTTT+GGG + chr7_1:60290362-60290381 None:intergenic 35.0%
! TCCATTATCTAGCAGAGTTT+TGG + chr7_1:60290363-60290382 None:intergenic 35.0%
ACAAGCTTGTCTACATAAGA+TGG + chr7_1:60290473-60290492 None:intergenic 35.0%
AAGGTAGCCATAAATTTCTC+AGG + chr7_1:60290500-60290519 None:intergenic 35.0%
!! GAAAAAGGGTATCATGTTTG+TGG + chr7_1:60290670-60290689 None:intergenic 35.0%
CAGTAGACAAGTGATGAAAA+AGG + chr7_1:60290685-60290704 None:intergenic 35.0%
!!! CATTTTAGCTTTCCATCTAC+TGG + chr7_1:60290792-60290811 None:intergenic 35.0%
TACATATCAATGGTCTGCTT+GGG + chr7_1:60290821-60290840 None:intergenic 35.0%
TTACATATCAATGGTCTGCT+TGG + chr7_1:60290822-60290841 None:intergenic 35.0%
! AGCAGAGTGTTACATATCAA+TGG + chr7_1:60290831-60290850 None:intergenic 35.0%
! CAATTAGAAGCATGTAGTGT+AGG + chr7_1:60291213-60291232 None:intergenic 35.0%
TGACTTTGAATTGCTCAAGA+AGG - chr7_1:60291423-60291442 Msa1027730:intron 35.0%
TTCCTGGCTATCAATGATAA+GGG + chr7_1:60291449-60291468 None:intergenic 35.0%
TCATTTACCATTCTGCTCAA+AGG + chr7_1:60291622-60291641 None:intergenic 35.0%
TCTGCTATTGTATATAGACG+AGG - chr7_1:60291679-60291698 Msa1027730:CDS 35.0%
ACAATGTGACATGGTTATCA+AGG + chr7_1:60291784-60291803 None:intergenic 35.0%
TCTAACTTGGACTAAAGATC+AGG + chr7_1:60291823-60291842 None:intergenic 35.0%
CTCATTGTCAATTCAGTTCT+TGG - chr7_1:60291849-60291868 Msa1027730:intron 35.0%
AAGTTTCGAGCTTTGCTTCT+GGG + chr7_1:60285730-60285749 None:intergenic 40.0%
AAAGTTTCGAGCTTTGCTTC+TGG + chr7_1:60285731-60285750 None:intergenic 40.0%
TGTGATTCCAGAAAAGGGTT+TGG - chr7_1:60285942-60285961 Msa1027730:CDS 40.0%
!!! TCCATCAGTTGCTGTTTTCA+GGG + chr7_1:60286296-60286315 None:intergenic 40.0%
TTGAAGGAGATGTAGATGAC+AGG - chr7_1:60286670-60286689 Msa1027730:intron 40.0%
CTCTATGGAAACCGTATGTA+TGG - chr7_1:60286739-60286758 Msa1027730:intron 40.0%
! AAGTGGTTGGAAGCATATCA+AGG + chr7_1:60286843-60286862 None:intergenic 40.0%
! GATATGCTTCCAACCACTTT+TGG - chr7_1:60286844-60286863 Msa1027730:intron 40.0%
AAAGCACAGAAACCAACACA+TGG + chr7_1:60287046-60287065 None:intergenic 40.0%
TGGTCAATCACGGAAAATAG+CGG + chr7_1:60287371-60287390 None:intergenic 40.0%
CATTCTAGTGTGGTCAATCA+CGG + chr7_1:60287381-60287400 None:intergenic 40.0%
! CCTAAATTTGTTCGCCTGAA+AGG + chr7_1:60287530-60287549 None:intergenic 40.0%
CCTTTCAGGCGAACAAATTT+AGG - chr7_1:60287527-60287546 Msa1027730:intron 40.0%
!! TTAGGCTGTTTTACGGGAAT+TGG - chr7_1:60287545-60287564 Msa1027730:intron 40.0%
!! TAGGCTGTTTTACGGGAATT+GGG - chr7_1:60287546-60287565 Msa1027730:intron 40.0%
ATACCTTCTCAACTACCTTC+AGG - chr7_1:60288025-60288044 Msa1027730:intron 40.0%
AATCCTGAAGGTAGTTGAGA+AGG + chr7_1:60288031-60288050 None:intergenic 40.0%
!! TATGACCTGTTTTTCCAGAG+AGG - chr7_1:60288135-60288154 Msa1027730:intron 40.0%
AAGTCAGATATCAACCTCCA+AGG + chr7_1:60288230-60288249 None:intergenic 40.0%
! ATCTGACTTGCATTCATGCT+AGG - chr7_1:60288241-60288260 Msa1027730:intron 40.0%
! TCTGACTTGCATTCATGCTA+GGG - chr7_1:60288242-60288261 Msa1027730:intron 40.0%
TGATGAACATCTTGCATCTC+AGG + chr7_1:60288327-60288346 None:intergenic 40.0%
TGTCAGGAGACAATCTTTAC+AGG + chr7_1:60288447-60288466 None:intergenic 40.0%
! GATCGTCAGATTTTGTGACT+TGG + chr7_1:60288558-60288577 None:intergenic 40.0%
GATTGCAAAAGTCAATGCCA+GGG + chr7_1:60288642-60288661 None:intergenic 40.0%
TGATTGCAAAAGTCAATGCC+AGG + chr7_1:60288643-60288662 None:intergenic 40.0%
!!! GGCATTGACTTTTGCAATCA+TGG - chr7_1:60288643-60288662 Msa1027730:intron 40.0%
ACTACCGTATATGGCAAGAA+AGG + chr7_1:60288928-60288947 None:intergenic 40.0%
TCTTGCCATATACGGTAGTA+TGG - chr7_1:60288929-60288948 Msa1027730:intron 40.0%
! TCTGATTGGCCATGTAATCA+AGG + chr7_1:60288992-60289011 None:intergenic 40.0%
!! CTATTGGCTTCAGATCTGAT+TGG + chr7_1:60289006-60289025 None:intergenic 40.0%
! ATCTGAAGCCAATAGCAACA+TGG - chr7_1:60289011-60289030 Msa1027730:CDS 40.0%
! TCTGAAGCCAATAGCAACAT+GGG - chr7_1:60289012-60289031 Msa1027730:CDS 40.0%
TCAACTTCCCATGTTGCTAT+TGG + chr7_1:60289022-60289041 None:intergenic 40.0%
ATAGCAACATGGGAAGTTGA+TGG - chr7_1:60289022-60289041 Msa1027730:CDS 40.0%
TCCCTTGTTGCCATAACTAA+TGG + chr7_1:60289307-60289326 None:intergenic 40.0%
TTATGGCAACAAGGGAAATG+AGG - chr7_1:60289311-60289330 Msa1027730:CDS 40.0%
! TGTTGAATGAGTGAGAGCAT+AGG - chr7_1:60289390-60289409 Msa1027730:intron 40.0%
! TGCTATCAAAGAGGTATGCA+AGG - chr7_1:60289595-60289614 Msa1027730:intron 40.0%
! GCTATCAAAGAGGTATGCAA+GGG - chr7_1:60289596-60289615 Msa1027730:intron 40.0%
!! GTTCTGGTTCAATGCTTTGT+TGG - chr7_1:60289657-60289676 Msa1027730:intron 40.0%
GGGCCAATAAAATTCCATCA+AGG - chr7_1:60289736-60289755 Msa1027730:intron 40.0%
TAAGCTAAAAGGCCTAGTGT+AGG + chr7_1:60289770-60289789 None:intergenic 40.0%
CAACAACAGAAGTTCCACTT+GGG + chr7_1:60289856-60289875 None:intergenic 40.0%
TCAACAACAGAAGTTCCACT+TGG + chr7_1:60289857-60289876 None:intergenic 40.0%
AGTGGAACTTCTGTTGTTGA+AGG - chr7_1:60289857-60289876 Msa1027730:intron 40.0%
ATAGAAGTTCCTGCATCAAG+TGG + chr7_1:60289941-60289960 None:intergenic 40.0%
CTGTATGGTTTCGTCATTGA+TGG - chr7_1:60289963-60289982 Msa1027730:intron 40.0%
TAACACAGATGACTACCTCA+TGG - chr7_1:60289986-60290005 Msa1027730:intron 40.0%
AGATGACTACCTCATGGTAA+TGG - chr7_1:60289992-60290011 Msa1027730:intron 40.0%
AAGTGTAAGCCATTACCATG+AGG + chr7_1:60290004-60290023 None:intergenic 40.0%
CCCAAAACTCTGCTAGATAA+TGG - chr7_1:60290359-60290378 Msa1027730:intron 40.0%
GTTTGCAACTATAGTTGGAG+TGG - chr7_1:60290434-60290453 Msa1027730:intron 40.0%
CTAAGACTGGAGCTAAGTAA+GGG + chr7_1:60290615-60290634 None:intergenic 40.0%
ACTAAGACTGGAGCTAAGTA+AGG + chr7_1:60290616-60290635 None:intergenic 40.0%
! ATTTTCAGATGCTGTCCTGA+TGG + chr7_1:60290859-60290878 None:intergenic 40.0%
TTCTGTCACATGAAGCTTGT+TGG - chr7_1:60290986-60291005 Msa1027730:CDS 40.0%
TAGATGTCCAGTCAGCAATA+TGG - chr7_1:60291038-60291057 Msa1027730:intron 40.0%
AGATGTCCAGTCAGCAATAT+GGG - chr7_1:60291039-60291058 Msa1027730:intron 40.0%
ATGGCGCATCGGATATAAAA+AGG + chr7_1:60291268-60291287 None:intergenic 40.0%
CAATAAGTGAAATGGCGCAT+CGG + chr7_1:60291279-60291298 None:intergenic 40.0%
CTTCCTGGCTATCAATGATA+AGG + chr7_1:60291450-60291469 None:intergenic 40.0%
!! CATACTGTTTGCTATCTTCC+TGG + chr7_1:60291465-60291484 None:intergenic 40.0%
CAGAATGGTAAATGACTCAG+AGG - chr7_1:60291627-60291646 Msa1027730:CDS 40.0%
CAAAGTAGGCGCAAATCAAG+AGG - chr7_1:60285691-60285710 Msa1027730:three_prime_UTR 45.0%
CGCAAATCAAGAGGTAGCAA+TGG - chr7_1:60285700-60285719 Msa1027730:three_prime_UTR 45.0%
AGCTCGAAACTTTCTTGCAG+TGG - chr7_1:60285738-60285757 Msa1027730:three_prime_UTR 45.0%
AACTTTCTTGCAGTGGCTAC+AGG - chr7_1:60285745-60285764 Msa1027730:three_prime_UTR 45.0%
!! GGCTACAGGTTTGTTAACTC+TGG - chr7_1:60285759-60285778 Msa1027730:three_prime_UTR 45.0%
TTGAATTCAGGCAAATGGGG+TGG - chr7_1:60285893-60285912 Msa1027730:CDS 45.0%
!!! GTCCATCAGTTGCTGTTTTC+AGG + chr7_1:60286297-60286316 None:intergenic 45.0%
GGATCTTGCAATACCCTCAT+TGG + chr7_1:60286621-60286640 None:intergenic 45.0%
!!! GCAAGATCCTTTTCTAGGAC+CGG - chr7_1:60286632-60286651 Msa1027730:intron 45.0%
CTACATTCCGGTCCTAGAAA+AGG + chr7_1:60286642-60286661 None:intergenic 45.0%
GTTTGCGCAAGGATTCTCTA+TGG - chr7_1:60286724-60286743 Msa1027730:intron 45.0%
TTGGGAGTTTCACTCACTTG+TGG - chr7_1:60286803-60286822 Msa1027730:intron 45.0%
GAGGAACTTCAAGAGCTAAG+AGG - chr7_1:60286889-60286908 Msa1027730:intron 45.0%
GCTACATACCCATTACACCA+TGG + chr7_1:60287485-60287504 None:intergenic 45.0%
ATCTTCAAAGCACACCTCTC+TGG + chr7_1:60288152-60288171 None:intergenic 45.0%
GACTTCAACTAACTCCTTGG+AGG - chr7_1:60288213-60288232 Msa1027730:intron 45.0%
! GCAATGGAGTGTTCAAAGCA+CGG + chr7_1:60288287-60288306 None:intergenic 45.0%
CTGACATGTGTCCAATGGAT+GGG - chr7_1:60288461-60288480 Msa1027730:intron 45.0%
ATAAACGGAGACCCATCCAT+TGG + chr7_1:60288475-60288494 None:intergenic 45.0%
AGTGCAAGGAGACACTGTTT+GGG - chr7_1:60288603-60288622 Msa1027730:intron 45.0%
TGAATGTCTGGATTTGTGGC+TGG - chr7_1:60288894-60288913 Msa1027730:intron 45.0%
!! ACATGGGAAGTTGATGGAAC+TGG - chr7_1:60289028-60289047 Msa1027730:CDS 45.0%
! GATGGAACTGGCTTAACAAC+AGG - chr7_1:60289040-60289059 Msa1027730:CDS 45.0%
! AGGTATGCAAGGGAAGCATA+CGG - chr7_1:60289606-60289625 Msa1027730:intron 45.0%
TGTAGGATGCAATGCCTTGA+TGG + chr7_1:60289753-60289772 None:intergenic 45.0%
!! AAGGCATTGCATCCTACACT+AGG - chr7_1:60289755-60289774 Msa1027730:intron 45.0%
!!! CACTAGGCCTTTTAGCTTAC+TGG - chr7_1:60289771-60289790 Msa1027730:intron 45.0%
AGCGAGTCCAGTAAGCTAAA+AGG + chr7_1:60289781-60289800 None:intergenic 45.0%
ACTAAATGCATGAGCCCAAG+TGG - chr7_1:60289839-60289858 Msa1027730:intron 45.0%
TTCAGTTTCTGTTGTCCCTC+AGG - chr7_1:60290098-60290117 Msa1027730:intron 45.0%
!! CTGAAGGATAATGGACCTGA+GGG + chr7_1:60290116-60290135 None:intergenic 45.0%
!! TCTGAAGGATAATGGACCTG+AGG + chr7_1:60290117-60290136 None:intergenic 45.0%
ATACCTGCACTTCAAGAAGC+TGG + chr7_1:60290176-60290195 None:intergenic 45.0%
TTGCATGGCTATGGTTCTCA+AGG + chr7_1:60290519-60290538 None:intergenic 45.0%
GAAAAGCTCATCCTCTTGCA+TGG + chr7_1:60290534-60290553 None:intergenic 45.0%
! GCAAGAGGATGAGCTTTTCA+AGG - chr7_1:60290535-60290554 Msa1027730:intron 45.0%
GGTTTCGTCAATGCTAGAAG+AGG - chr7_1:60290556-60290575 Msa1027730:intron 45.0%
GCAGTTTCAGTGACTAAGAC+TGG + chr7_1:60290628-60290647 None:intergenic 45.0%
!!! ACACTCTGCTTTTTGCCATC+AGG - chr7_1:60290841-60290860 Msa1027730:intron 45.0%
!! ATGAAGCTTGTTGGACCTGA+AGG - chr7_1:60290995-60291014 Msa1027730:CDS 45.0%
!! TGAAGCTTGTTGGACCTGAA+GGG - chr7_1:60290996-60291015 Msa1027730:CDS 45.0%
GATAATTGTCTCTCCCCTTC+AGG + chr7_1:60291013-60291032 None:intergenic 45.0%
AAACCTCCCATATTGCTGAC+TGG + chr7_1:60291048-60291067 None:intergenic 45.0%
TCAGCAATATGGGAGGTTTG+CGG - chr7_1:60291049-60291068 Msa1027730:intron 45.0%
!! ATGGACCTTGAAGAGCATTC+TGG - chr7_1:60291388-60291407 Msa1027730:intron 45.0%
CTGTTCCAGAATGCTCTTCA+AGG + chr7_1:60291396-60291415 None:intergenic 45.0%
!! TGAAGAGCATTCTGGAACAG+AGG - chr7_1:60291396-60291415 Msa1027730:intron 45.0%
TTCGGCACGCCCTTAAAAAT+TGG - chr7_1:60291972-60291991 Msa1027730:five_prime_UTR 45.0%
TCGGCACGCCCTTAAAAATT+GGG - chr7_1:60291973-60291992 Msa1027730:five_prime_UTR 45.0%
!!! TTGCTGTTTTCAGGGCCGTT+CGG + chr7_1:60286288-60286307 None:intergenic 50.0%
GCCCTGAAAACAGCAACTGA+TGG - chr7_1:60286292-60286311 Msa1027730:intron 50.0%
AAGCACCTGTGACGCTGTTT+GGG + chr7_1:60286347-60286366 None:intergenic 50.0%
TAAGCACCTGTGACGCTGTT+TGG + chr7_1:60286348-60286367 None:intergenic 50.0%
! TAAAGATGCTGGTTGGCCAG+TGG - chr7_1:60287016-60287035 Msa1027730:intron 50.0%
ACCAACACATGGATGACCAC+TGG + chr7_1:60287035-60287054 None:intergenic 50.0%
ATTGCGGCTCTATATCGCTG+TGG - chr7_1:60287326-60287345 Msa1027730:intron 50.0%
! GCACACCTCTCTGGAAAAAC+AGG + chr7_1:60288143-60288162 None:intergenic 50.0%
GAGAGAGAGAGAGAGAGAGA+CGG + chr7_1:60288385-60288404 None:intergenic 50.0%
GTCTCCTGACATGTGTCCAA+TGG - chr7_1:60288456-60288475 Msa1027730:intron 50.0%
CCATCCATTGGACACATGTC+AGG + chr7_1:60288463-60288482 None:intergenic 50.0%
CCTGACATGTGTCCAATGGA+TGG - chr7_1:60288460-60288479 Msa1027730:intron 50.0%
TGTGCTGTGTGTGGTTTCCT+TGG + chr7_1:60288584-60288603 None:intergenic 50.0%
CAGTGCAAGGAGACACTGTT+TGG - chr7_1:60288602-60288621 Msa1027730:intron 50.0%
!! AGGAGACACTGTTTGGGTTG+AGG - chr7_1:60288609-60288628 Msa1027730:intron 50.0%
!! GGAGACACTGTTTGGGTTGA+GGG - chr7_1:60288610-60288629 Msa1027730:intron 50.0%
GAGCACGTGGAAAGCTCATA+TGG + chr7_1:60289636-60289655 None:intergenic 50.0%
TTGAACCAGAACTGAGCACG+TGG + chr7_1:60289649-60289668 None:intergenic 50.0%
AAGCCAGCTTCTTGAAGTGC+AGG - chr7_1:60290170-60290189 Msa1027730:intron 50.0%
!!! CCACTGTTTTTGGTGCCTGA+TGG + chr7_1:60290392-60290411 None:intergenic 50.0%
CCATCAGGCACCAAAAACAG+TGG - chr7_1:60290389-60290408 Msa1027730:intron 50.0%
GAGAACCATAGCCATGCAAG+AGG - chr7_1:60290520-60290539 Msa1027730:intron 50.0%
CTCATCCTCTTGCATGGCTA+TGG + chr7_1:60290528-60290547 None:intergenic 50.0%
!! GAAGCTTGTTGGACCTGAAG+GGG - chr7_1:60290997-60291016 Msa1027730:CDS 50.0%
TGTCCAGTCAGCAATATGGG+AGG - chr7_1:60291042-60291061 Msa1027730:intron 50.0%
CTTCATGTCAAGTGAGTGCC+AGG - chr7_1:60291106-60291125 Msa1027730:intron 50.0%
! GGCCCTTATCATTGATAGCC+AGG - chr7_1:60291444-60291463 Msa1027730:intron 50.0%
CGGCACGCCCTTAAAAATTG+GGG - chr7_1:60291974-60291993 Msa1027730:five_prime_UTR 50.0%
GCCAGTGGTCATCCATGTGT+TGG - chr7_1:60287031-60287050 Msa1027730:intron 55.0%
ACCACACACAGCACAGTGCA+AGG - chr7_1:60288589-60288608 Msa1027730:intron 55.0%
TCCTTGCACTGTGCTGTGTG+TGG + chr7_1:60288593-60288612 None:intergenic 55.0%
GCTTTCCACGTGCTCAGTTC+TGG - chr7_1:60289641-60289660 Msa1027730:intron 55.0%
TGGGAGGTTTGCGGTGATTC+TGG - chr7_1:60291058-60291077 Msa1027730:intron 55.0%
GCAAATGGGGTGGAGCTACG+AGG - chr7_1:60285903-60285922 Msa1027730:CDS 60.0%
GCTCTCCCAAACAGCGTCAC+AGG - chr7_1:60286339-60286358 Msa1027730:intron 60.0%
! GACAGTGGAGCGTTTGCGCA+AGG - chr7_1:60286713-60286732 Msa1027730:intron 60.0%
! TGGGTTGAGGGTCTTGTCCC+TGG - chr7_1:60288622-60288641 Msa1027730:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 60285565 60292053 60285565 ID=Msa1027730;Name=Msa1027730
chr7_1 mRNA 60285565 60292053 60285565 ID=Msa1027730-mRNA-1;Parent=Msa1027730;Name=Msa1027730-mRNA-1;_AED=0.10;_eAED=0.10;_QI=154|0.92|1|1|0.92|0.93|15|267|537
chr7_1 exon 60285565 60285988 60285565 ID=Msa1027730-mRNA-1:exon:12485;Parent=Msa1027730-mRNA-1
chr7_1 exon 60286139 60286234 60286139 ID=Msa1027730-mRNA-1:exon:12484;Parent=Msa1027730-mRNA-1
chr7_1 exon 60286502 60286617 60286502 ID=Msa1027730-mRNA-1:exon:12483;Parent=Msa1027730-mRNA-1
chr7_1 exon 60287041 60287283 60287041 ID=Msa1027730-mRNA-1:exon:12482;Parent=Msa1027730-mRNA-1
chr7_1 exon 60287427 60287498 60287427 ID=Msa1027730-mRNA-1:exon:12481;Parent=Msa1027730-mRNA-1
chr7_1 exon 60287611 60287667 60287611 ID=Msa1027730-mRNA-1:exon:12480;Parent=Msa1027730-mRNA-1
chr7_1 exon 60288286 60288350 60288286 ID=Msa1027730-mRNA-1:exon:12479;Parent=Msa1027730-mRNA-1
chr7_1 exon 60288527 60288607 60288527 ID=Msa1027730-mRNA-1:exon:12478;Parent=Msa1027730-mRNA-1
chr7_1 exon 60288954 60289067 60288954 ID=Msa1027730-mRNA-1:exon:12477;Parent=Msa1027730-mRNA-1
chr7_1 exon 60289243 60289355 60289243 ID=Msa1027730-mRNA-1:exon:12476;Parent=Msa1027730-mRNA-1
chr7_1 exon 60289890 60289972 60289890 ID=Msa1027730-mRNA-1:exon:12475;Parent=Msa1027730-mRNA-1
chr7_1 exon 60290676 60290781 60290676 ID=Msa1027730-mRNA-1:exon:12474;Parent=Msa1027730-mRNA-1
chr7_1 exon 60290867 60291038 60290867 ID=Msa1027730-mRNA-1:exon:12473;Parent=Msa1027730-mRNA-1
chr7_1 exon 60291625 60291715 60291625 ID=Msa1027730-mRNA-1:exon:12472;Parent=Msa1027730-mRNA-1
chr7_1 exon 60291852 60292053 60291852 ID=Msa1027730-mRNA-1:exon:12471;Parent=Msa1027730-mRNA-1
chr7_1 five_prime_UTR 60291900 60292053 60291900 ID=Msa1027730-mRNA-1:five_prime_utr;Parent=Msa1027730-mRNA-1
chr7_1 CDS 60291852 60291899 60291852 ID=Msa1027730-mRNA-1:cds;Parent=Msa1027730-mRNA-1
chr7_1 CDS 60291625 60291715 60291625 ID=Msa1027730-mRNA-1:cds;Parent=Msa1027730-mRNA-1
chr7_1 CDS 60290867 60291038 60290867 ID=Msa1027730-mRNA-1:cds;Parent=Msa1027730-mRNA-1
chr7_1 CDS 60290676 60290781 60290676 ID=Msa1027730-mRNA-1:cds;Parent=Msa1027730-mRNA-1
chr7_1 CDS 60289890 60289972 60289890 ID=Msa1027730-mRNA-1:cds;Parent=Msa1027730-mRNA-1
chr7_1 CDS 60289243 60289355 60289243 ID=Msa1027730-mRNA-1:cds;Parent=Msa1027730-mRNA-1
chr7_1 CDS 60288954 60289067 60288954 ID=Msa1027730-mRNA-1:cds;Parent=Msa1027730-mRNA-1
chr7_1 CDS 60288527 60288607 60288527 ID=Msa1027730-mRNA-1:cds;Parent=Msa1027730-mRNA-1
chr7_1 CDS 60288286 60288350 60288286 ID=Msa1027730-mRNA-1:cds;Parent=Msa1027730-mRNA-1
chr7_1 CDS 60287611 60287667 60287611 ID=Msa1027730-mRNA-1:cds;Parent=Msa1027730-mRNA-1
chr7_1 CDS 60287427 60287498 60287427 ID=Msa1027730-mRNA-1:cds;Parent=Msa1027730-mRNA-1
chr7_1 CDS 60287041 60287283 60287041 ID=Msa1027730-mRNA-1:cds;Parent=Msa1027730-mRNA-1
chr7_1 CDS 60286502 60286617 60286502 ID=Msa1027730-mRNA-1:cds;Parent=Msa1027730-mRNA-1
chr7_1 CDS 60286139 60286234 60286139 ID=Msa1027730-mRNA-1:cds;Parent=Msa1027730-mRNA-1
chr7_1 CDS 60285832 60285988 60285832 ID=Msa1027730-mRNA-1:cds;Parent=Msa1027730-mRNA-1
chr7_1 three_prime_UTR 60285565 60285831 60285565 ID=Msa1027730-mRNA-1:three_prime_utr;Parent=Msa1027730-mRNA-1
Gene Sequence

>Msa1027730

ATGGCGAACCCAGAAGCAAAGCTCGAAACTTTCTTGCAGTGGCTACAGGCAAATGGGGTGGAGCTACGAGGCTGCAATATCAAGTACTGTGATTCCAGAAAAGGGTTTGGCATATTTTGTGATAAAGATGTTTCTGATGGGATTCTGTTGGTTGTTCCACTAGAATTATCAATTACTCCAATGAGGGTATTGCAAGATCCTTTTCTAGGACCGGAATGTAGAGCATTGTTTGAAGGAGATGTAGATGACAGGCTCTTAATGATGTTGTTATTGACAGTGGAGCGTTTGCGCAAGGATTCTCTATGGAAACCGTACCTTGATATGCTTCCAACCACTTTTGGAAATACACTTTGGTTTAGTGAAGAGGAACTTCAAGAGCTAAGAGGAACAACATTATATCGTGCAACTGAATTACAGAAGAAAAGCCTGTTGAATTTGTATGAAACTAAAGTGAAGGATATAGTGAAGAAACTTTTGACTCTTGACGGAGATTCTAAGATGGCAAATTCAGTATTTTGGAGCCGTGCTTTGAACACTCCATTGCCTAGTTCTTATGTATTTCCTGAGATGCAAGATGTTCATCAGAGTTGCACTCCAAAAGCTGATGAAAACGGAAGCCAAGTCACAAAATCTGACGATCTAACCAAGGAAACCACACACAGCACAGTGCAAGGAGACACTGTTTGGGTTGAGGGTCTTGTCCCTGGCATTGACTTTTGCAATCATGATCTGAAGCCAATAGCAACATGGGAAGTTGATGGAACTGGCTTAACAACAGGAGTTCCCGTCTCTATGTATCTTCTTTCCGCTGCTCAAATTCCCTTGCAGATTGATCGAGAAATTTCCATTAGTTATGGCAACAAGGGAAATGAGGAACTTCTATATCTGTATGGTTTCGTCATTGATGGTAACACAGATGACTACCTCATGGTCCATTATCCTTCAGAAGCAATCAATACTATTTCTTTTTCAGAGTCTAAAAGCCAGCTTCTTGAAGTGCAGAAGGCTGAAATGAGATGTCTTTTACCCAAAACTCTGCTAGATAATGGATTTTTTCCATCAGGCACCAAAAACAGTGGAGAAAATAACAAGAGCAACAAAGTTTGCAACTATAGTTGGAGTGGTCAGCGCAAGACTCCATCTTATGTAGACAAGCTTGTTTTTCCTGAGAAATTTATGGCTACCTTGAGAACCATAGCCATGCAAGAGGATGAGCTTTTCAAGGTTTCGTCAATGCTAGAAGAGCTTGTTGGACCTGAAGGGGAGAGACAATTATCAGATATAGATGTCCAGTCAGCAATATGGGAGGTTTGCGGTGATTCTGGAGCTTTACAAGTGCTAGTTGATCTTCTTCATGTCAAGTTAATGGACCTTGAAGAGCATTCTGGAACAGAGGATAATGACTTTGAATTGCTCAAGAAGGCCCTTATCATTGATAGCCAGGAAGATAGCAAACAAATGGTAAATGACTCAGAGGAAACAACATTGATGTCTAGAAACAAATGGTCTGCTATTGTATATAGACGAGGTCAAAAGCAGCTAACTCGATTATTCTTGAAAGAAGCAGAACATGCTCTGCAGTTATCGATGAGCGAAGAGACGAGTGTTCCTTGA

Protein sequence

>Msa1027730

MANPEAKLETFLQWLQANGVELRGCNIKYCDSRKGFGIFCDKDVSDGILLVVPLELSITPMRVLQDPFLGPECRALFEGDVDDRLLMMLLLTVERLRKDSLWKPYLDMLPTTFGNTLWFSEEELQELRGTTLYRATELQKKSLLNLYETKVKDIVKKLLTLDGDSKMANSVFWSRALNTPLPSSYVFPEMQDVHQSCTPKADENGSQVTKSDDLTKETTHSTVQGDTVWVEGLVPGIDFCNHDLKPIATWEVDGTGLTTGVPVSMYLLSAAQIPLQIDREISISYGNKGNEELLYLYGFVIDGNTDDYLMVHYPSEAINTISFSESKSQLLEVQKAEMRCLLPKTLLDNGFFPSGTKNSGENNKSNKVCNYSWSGQRKTPSYVDKLVFPEKFMATLRTIAMQEDELFKVSSMLEELVGPEGERQLSDIDVQSAIWEVCGDSGALQVLVDLLHVKLMDLEEHSGTEDNDFELLKKALIIDSQEDSKQMVNDSEETTLMSRNKWSAIVYRRGQKQLTRLFLKEAEHALQLSMSEETSVP*