AlfalfaGEDB | Msa0898500

M. sativa cultivar zhongmu-4 / Msa0898500

KEGG: K01535
GO: -
PFAM: PF00479.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0898500	RYQ87513.1	60.000	100	18	2	28	107	111	208	1.69e-27	114

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0898500	sp\|Q43839\|G6PDC_SOLTU	55.914	93	21	1	28	100	102	194	1.13e-23	100

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0898500	A0A444XDI8	60.000	100	18	2	28	107	111	208	8.07e-28	114

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0417270	Msa0898500	0.802541	5.343277e-49	-8.615850e-47
Msa0633060	Msa0898500	0.809130	2.203006e-50	-8.615850e-47
Msa0644620	Msa0898500	0.803750	3.003032e-49	-8.615850e-47
Msa0691380	Msa0898500	0.802825	4.667894e-49	-8.615850e-47
Msa0898500	Msa0898510	0.852107	5.734013e-61	-8.615850e-47
Msa0898500	Msa1027730	0.820421	6.920828e-53	-8.615850e-47
Msa0898500	Msa1044420	0.818086	2.355338e-52	-8.615850e-47
Msa0898500	Msa1048660	0.862258	5.754204e-64	-8.615850e-47
Msa0898500	Msa1186060	0.810870	9.297364e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0898500	MtrunA17_Chr8g0341321	67.033	91	10	1	28	98	107	197	1.75e-31	119
Msa0898500	MtrunA17_Chr2g0333721	61.628	86	21	1	69	154	497	570	7.25e-26	103
Msa0898500	MtrunA17_Chr2g0304941	67.143	70	20	1	88	154	504	573	3.42e-23	95.5
Msa0898500	MtrunA17_Chr1g0148031	54.651	86	27	1	69	154	499	572	1.24e-22	94.0
Msa0898500	MtrunA17_Chr4g0059961	54.651	86	27	1	69	154	503	576	1.24e-22	94.0
Msa0898500	MtrunA17_Chr3g0138931	53.488	86	28	1	69	154	499	572	1.84e-22	93.6
Msa0898500	MtrunA17_Chr4g0065481	65.714	70	21	1	88	154	504	573	3.07e-22	92.8
Msa0898500	MtrunA17_Chr2g0298031	52.326	86	29	1	69	154	505	578	1.88e-21	90.5
Msa0898500	MtrunA17_Chr1g0147981	70.175	57	17	0	98	154	533	589	2.96e-21	90.1
Msa0898500	MtrunA17_Chr4g0072131	70.175	57	17	0	98	154	519	575	3.86e-21	89.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0898500	AT4G30190.2	57.831	83	23	1	69	151	497	567	8.10e-24	97.8
Msa0898500	AT4G30190.1	55.814	86	26	1	69	154	497	570	2.15e-23	96.7
Msa0898500	AT1G80660.2	68.571	70	19	1	88	154	377	446	4.88e-23	95.5
Msa0898500	AT1G80660.1	68.571	70	19	1	88	154	506	575	5.55e-23	95.5
Msa0898500	AT1G80660.3	68.571	70	19	1	88	154	506	575	6.32e-23	95.1
Msa0898500	AT1G80660.4	68.571	70	19	1	88	154	506	575	6.38e-23	95.1
Msa0898500	AT5G62670.1	53.488	86	28	1	69	154	501	574	7.13e-23	95.1
Msa0898500	AT5G57350.3	65.714	70	21	1	88	154	240	309	2.27e-22	93.6
Msa0898500	AT3G47950.1	73.684	57	15	0	98	154	522	578	2.57e-22	93.6
Msa0898500	AT3G47950.2	73.684	57	15	0	98	154	522	578	2.57e-22	93.6

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Find 51 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTGTTATGAATAGATGA+GGG	0.613750	6_1:-92627319	Msa0898500:exon
AAATGACTGATGAAGAGTTA+AGG	0.494086	6_1:-92628553	Msa0898500:CDS
AACAACAGTTATACTAAGGT+TGG	0.501460	6_1:+92628810	None:intergenic
AACTGGTCGCAGGCTCGGCA+TGG	0.489073	6_1:-92627789	Msa0898500:CDS
AAGGAAACTGGTCGCAGGCT+CGG	0.496256	6_1:-92627794	Msa0898500:CDS
AATTGTATGTATATATTACC+AGG	0.495220	6_1:+92627653	None:intergenic
ACCGGTGATCAGGTCTGTAT+TGG	0.470048	6_1:-92627818	Msa0898500:intron
ACTACAGAACTCATGTTTAA+AGG	0.221139	6_1:-92627230	Msa0898500:three_prime_UTR
ACTGGTCGCAGGCTCGGCAT+GGG	0.525330	6_1:-92627788	Msa0898500:CDS
ATAGTTCTTGATGCCTCATT+TGG	0.308689	6_1:+92627140	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAACAGTTATACTAAGGT+TGG	+	chr6_1:92627093-92627112	None:intergenic	30.0%
AACCTTAGTATAACTGTTGT+TGG	-	chr6_1:92627092-92627111	Msa0898500:three_prime_UTR	30.0%
AAATGACTGATGAAGAGTTA+AGG	-	chr6_1:92627347-92627366	Msa0898500:intron	30.0%
GAACTATTCATGATAGTAGA+GGG	-	chr6_1:92627483-92627502	Msa0898500:intron	30.0%
AAATGACAATTGGCAAATAG+GGG	+	chr6_1:92627605-92627624	None:intergenic	30.0%
GAAATGACAATTGGCAAATA+GGG	+	chr6_1:92627606-92627625	None:intergenic	30.0%
TGAAATGACAATTGGCAAAT+AGG	+	chr6_1:92627607-92627626	None:intergenic	30.0%
AAAAGAACTCATCAGTATAG+GGG	+	chr6_1:92627769-92627788	None:intergenic	30.0%
CAAAAGAACTCATCAGTATA+GGG	+	chr6_1:92627770-92627789	None:intergenic	30.0%
TCAAAAGAACTCATCAGTAT+AGG	+	chr6_1:92627771-92627790	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	92627030	92628892	92627030	ID=Msa0898500;Name=Msa0898500
chr6_1	mRNA	92627030	92628892	92627030	ID=Msa0898500-mRNA-1;Parent=Msa0898500;Name=Msa0898500-mRNA-1;_AED=0.41;_eAED=0.41;_QI=0\|0.33\|0.28\|1\|0.66\|0.85\|7\|292\|177
chr6_1	exon	92627030	92627346	92627030	ID=Msa0898500-mRNA-1:exon:15639;Parent=Msa0898500-mRNA-1
chr6_1	exon	92627614	92627828	92627614	ID=Msa0898500-mRNA-1:exon:15638;Parent=Msa0898500-mRNA-1
chr6_1	exon	92628010	92628058	92628010	ID=Msa0898500-mRNA-1:exon:15637;Parent=Msa0898500-mRNA-1
chr6_1	exon	92628180	92628185	92628180	ID=Msa0898500-mRNA-1:exon:15636;Parent=Msa0898500-mRNA-1
chr6_1	exon	92628512	92628606	92628512	ID=Msa0898500-mRNA-1:exon:15635;Parent=Msa0898500-mRNA-1
chr6_1	exon	92628731	92628805	92628731	ID=Msa0898500-mRNA-1:exon:15634;Parent=Msa0898500-mRNA-1
chr6_1	exon	92628824	92628892	92628824	ID=Msa0898500-mRNA-1:exon:15633;Parent=Msa0898500-mRNA-1
chr6_1	CDS	92628824	92628892	92628824	ID=Msa0898500-mRNA-1:cds;Parent=Msa0898500-mRNA-1
chr6_1	CDS	92628731	92628805	92628731	ID=Msa0898500-mRNA-1:cds;Parent=Msa0898500-mRNA-1
chr6_1	CDS	92628512	92628606	92628512	ID=Msa0898500-mRNA-1:cds;Parent=Msa0898500-mRNA-1
chr6_1	CDS	92628180	92628185	92628180	ID=Msa0898500-mRNA-1:cds;Parent=Msa0898500-mRNA-1
chr6_1	CDS	92628010	92628058	92628010	ID=Msa0898500-mRNA-1:cds;Parent=Msa0898500-mRNA-1
chr6_1	CDS	92627614	92627828	92627614	ID=Msa0898500-mRNA-1:cds;Parent=Msa0898500-mRNA-1
chr6_1	CDS	92627322	92627346	92627322	ID=Msa0898500-mRNA-1:cds;Parent=Msa0898500-mRNA-1
chr6_1	three_prime_UTR	92627030	92627321	92627030	ID=Msa0898500-mRNA-1:three_prime_utr;Parent=Msa0898500-mRNA-1

Gene Sequence

>Msa0898500

ATGGCTGCAATGGTGGCTGCAATGGATTGTTTTCGTTGTCAGACTCTGAATCCACAGGATCCAACCTTACATCTGGAGACCTTGCCAAAAAGAAGATTTTTTCCAGCACTCTTTGCTCTTTTCTATGAAGATTGGTTACCCGAGAATTTTATTGTGTTTGGATATGCTCAGACCAAAATGACTGATGAAGAGTTAAGGAACATGATTAGCCAGACTTTAACATGCAGAATCAACAAGAGCATGATCTCTGAGGAAGACTTTCTAGATTTGGATTCCAAGCTAAAAGAGAAAGAGGTCTGTATTGGAAAGGAAACTGGTCGCAGGCTCGGCATGGGAAGTAACATGTATCCATCATCCTCCCTCCTTGGCAAGCACAAGGATGCATCGATTGCTTCACCTCCGGTCGATGAACTTATTGAGAAGGCTGATGGATTTGTTGGTGTCTTCCCTGGTAATATATACATACAATTTGTATTATCAATTTACTCTGGACTCAGAAAAGAAGAAATAGTGGAAACTGTTATGAATAGATGA

Protein sequence

>Msa0898500

MAAMVAAMDCFRCQTLNPQDPTLHLETLPKRRFFPALFALFYEDWLPENFIVFGYAQTKMTDEELRNMISQTLTCRINKSMISEEDFLDLDSKLKEKEVCIGKETGRRLGMGSNMYPSSSLLGKHKDASIASPPVDELIEKADGFVGVFPGNIYIQFVLSIYSGLRKEEIVETVMNR*