Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1028020 | XP_013449145.1 | 100.000 | 242 | 0 | 0 | 1 | 242 | 1 | 242 | 4.30e-180 | 503 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1028020 | sp|Q8H383|ALFL2_ORYSJ | 75.000 | 240 | 53 | 2 | 1 | 236 | 1 | 237 | 1.84e-119 | 343 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1028020 | A0A072U0H4 | 100.000 | 242 | 0 | 0 | 1 | 242 | 1 | 242 | 2.06e-180 | 503 |
Gene ID | Type | Classification |
---|---|---|
Msa1028020 | TF | Alfin-like |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa1028020 | Msa1108640 | 0.819030 | 1.438520e-52 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1028020 | MtrunA17_Chr7g0242511 | 100.000 | 242 | 0 | 0 | 1 | 242 | 1 | 242 | 0.0 | 503 |
Msa1028020 | MtrunA17_Chr4g0006381 | 90.984 | 244 | 18 | 3 | 1 | 242 | 1 | 242 | 1.83e-144 | 403 |
Msa1028020 | MtrunA17_Chr4g0076771 | 61.355 | 251 | 87 | 4 | 1 | 241 | 4 | 254 | 1.03e-91 | 270 |
Msa1028020 | MtrunA17_Chr8g0343441 | 57.831 | 249 | 93 | 5 | 6 | 242 | 8 | 256 | 4.10e-88 | 261 |
Msa1028020 | MtrunA17_Chr1g0150821 | 59.459 | 259 | 79 | 5 | 6 | 242 | 9 | 263 | 7.55e-85 | 253 |
Msa1028020 | MtrunA17_Chr2g0300241 | 56.538 | 260 | 88 | 6 | 1 | 242 | 1 | 253 | 9.71e-85 | 253 |
Msa1028020 | MtrunA17_Chr2g0329821 | 56.557 | 244 | 96 | 4 | 3 | 236 | 1 | 244 | 5.81e-82 | 245 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1028020 | AT5G05610.2 | 73.950 | 238 | 60 | 1 | 4 | 241 | 5 | 240 | 1.34e-116 | 333 |
Msa1028020 | AT5G05610.1 | 73.950 | 238 | 60 | 1 | 4 | 241 | 5 | 240 | 1.34e-116 | 333 |
Msa1028020 | AT3G11200.1 | 77.083 | 240 | 54 | 1 | 3 | 241 | 6 | 245 | 3.41e-115 | 330 |
Msa1028020 | AT3G11200.2 | 75.481 | 208 | 50 | 1 | 35 | 241 | 25 | 232 | 1.83e-97 | 284 |
Msa1028020 | AT3G42790.1 | 62.397 | 242 | 84 | 5 | 6 | 241 | 9 | 249 | 7.96e-93 | 273 |
Msa1028020 | AT5G20510.1 | 59.127 | 252 | 88 | 4 | 6 | 242 | 9 | 260 | 7.77e-88 | 261 |
Msa1028020 | AT2G02470.1 | 60.484 | 248 | 86 | 4 | 7 | 242 | 9 | 256 | 8.39e-88 | 261 |
Msa1028020 | AT2G02470.2 | 59.336 | 241 | 91 | 3 | 7 | 242 | 9 | 247 | 2.22e-85 | 254 |
Msa1028020 | AT1G14510.1 | 58.333 | 240 | 93 | 4 | 7 | 239 | 9 | 248 | 1.35e-82 | 247 |
Msa1028020 | AT5G26210.1 | 57.430 | 249 | 95 | 4 | 4 | 241 | 6 | 254 | 3.03e-77 | 234 |
Msa1028020 | AT5G20510.2 | 59.722 | 216 | 72 | 4 | 42 | 242 | 4 | 219 | 4.36e-69 | 212 |
Msa1028020 | AT5G20510.3 | 61.875 | 160 | 56 | 3 | 6 | 160 | 9 | 168 | 1.73e-55 | 176 |
Msa1028020 | AT2G02470.3 | 62.179 | 156 | 57 | 1 | 7 | 160 | 9 | 164 | 5.76e-55 | 177 |
Find 93 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCAATTGAGATCTGAGAAAA+AGG | 0.208498 | 7_1:+60563023 | None:intergenic |
GCTGGCTTGTTGTCCTTAAT+TGG | 0.215056 | 7_1:+60560705 | None:intergenic |
GTTATGTTCAAATTCATTAA+TGG | 0.247598 | 7_1:+60560060 | None:intergenic |
ATTACAATGCCGACGAGTTT+TGG | 0.256361 | 7_1:-60560450 | Msa1028020:CDS |
ACCCTAGTTTCAAGGCAATT+TGG | 0.262098 | 7_1:-60560311 | Msa1028020:exon |
CTTTCTGTGGCGTTCTATCT+TGG | 0.287893 | 7_1:-60562096 | Msa1028020:CDS |
CTCAGATCTCAATTGGGTTA+TGG | 0.316236 | 7_1:-60563016 | Msa1028020:exon |
TTGCTGTGCACAGTGATTCA+TGG | 0.330962 | 7_1:-60562122 | Msa1028020:CDS |
AAGGATAATTTGTGTCTCTA+TGG | 0.357930 | 7_1:-60562270 | Msa1028020:CDS |
CTTGTATTGCTTTATGCTCT+CGG | 0.362549 | 7_1:+60560363 | None:intergenic |
GACCGACAGGAAACCAATTA+AGG | 0.374595 | 7_1:-60560718 | Msa1028020:CDS |
TTGCTTCCACTGTCCGCTGC+TGG | 0.382118 | 7_1:+60560687 | None:intergenic |
CCGTCATCCACAGGAAACTT+TGG | 0.383878 | 7_1:+60560532 | None:intergenic |
CAGAAGTGATTGATGTTTCA+TGG | 0.385906 | 7_1:-60560272 | Msa1028020:three_prime_UTR |
CTCCTCTTCCATGTTGGTTA+CGG | 0.386470 | 7_1:+60560095 | None:intergenic |
AGAGCTGGCTCAGGGAGTTC+CGG | 0.393745 | 7_1:+60562198 | None:intergenic |
TCTCAATTGGGTTATGGAAA+TGG | 0.397199 | 7_1:-60563010 | Msa1028020:exon |
CACTAACCTTGGTGCTTCCT+CGG | 0.397306 | 7_1:+60560661 | None:intergenic |
GAATGAAGAACGTAGAGAAA+AGG | 0.397720 | 7_1:+60563130 | None:intergenic |
TTGCTTTATGCTCTCGGCCT+TGG | 0.413678 | 7_1:+60560369 | None:intergenic |
TCCAAATTGCCTTGAAACTA+GGG | 0.422250 | 7_1:+60560310 | None:intergenic |
AACCATGAGAATGGATCAAA+AGG | 0.425090 | 7_1:+60563094 | None:intergenic |
CGTCATCCACAGGAAACTTT+GGG | 0.432337 | 7_1:+60560533 | None:intergenic |
TTCCAAATTGCCTTGAAACT+AGG | 0.434244 | 7_1:+60560309 | None:intergenic |
GAACTCCCTGAGCCAGCTCT+TGG | 0.435136 | 7_1:-60562195 | Msa1028020:CDS |
TCCTGTGGATGACGGTTATG+AGG | 0.442634 | 7_1:-60560524 | Msa1028020:CDS |
AGCACAGTGAAACACTTTGC+GGG | 0.443628 | 7_1:-60560486 | Msa1028020:CDS |
TCCGCCTGATGCTGCATTGA+GGG | 0.446153 | 7_1:+60560338 | None:intergenic |
AATGAAGAACGTAGAGAAAA+GGG | 0.451067 | 7_1:+60563131 | None:intergenic |
TTTATGCTCTCGGCCTTGGC+AGG | 0.451134 | 7_1:+60560373 | None:intergenic |
TCCGGTGGAACTTCCTCTGC+TGG | 0.464747 | 7_1:+60562216 | None:intergenic |
AGTGCCCTCAATGCAGCATC+AGG | 0.465718 | 7_1:-60560342 | Msa1028020:CDS |
GTAGTGTGTGTTTGTTACTA+AGG | 0.465827 | 7_1:+60563175 | None:intergenic |
ACTAACCTTGGTGCTTCCTC+GGG | 0.472237 | 7_1:+60560662 | None:intergenic |
TTGATTCCAAGAGCTGGCTC+AGG | 0.473652 | 7_1:+60562189 | None:intergenic |
ATGGTCATAATAATGAAAGC+TGG | 0.475692 | 7_1:-60562251 | Msa1028020:CDS |
ACGGTATGAACCGTAGAGAT+TGG | 0.485613 | 7_1:-60562155 | Msa1028020:CDS |
CGGAACAGACCCTAGTTTCA+AGG | 0.486474 | 7_1:-60560319 | Msa1028020:exon |
GTCGGTCACAATTTCGAAAA+CGG | 0.493814 | 7_1:+60560734 | None:intergenic |
GTCCTTAATTGGTTTCCTGT+CGG | 0.494680 | 7_1:+60560716 | None:intergenic |
TTCCGTAACCAACATGGAAG+AGG | 0.502923 | 7_1:-60560097 | Msa1028020:three_prime_UTR |
TTCCGCCTGATGCTGCATTG+AGG | 0.510891 | 7_1:+60560337 | None:intergenic |
TGACGGTTATGAGGAGGAGG+AGG | 0.514089 | 7_1:-60560515 | Msa1028020:CDS |
GAGGGGTGAAACCATGAGAA+TGG | 0.516703 | 7_1:+60563085 | None:intergenic |
CTATGCCTCCTCTTCCATGT+TGG | 0.517830 | 7_1:+60560089 | None:intergenic |
GCAAAATTGATTCCAAGAGC+TGG | 0.521530 | 7_1:+60562183 | None:intergenic |
TCCTCATAACCGTCATCCAC+AGG | 0.530396 | 7_1:+60560523 | None:intergenic |
TGGTCATAATAATGAAAGCT+GGG | 0.544113 | 7_1:-60562250 | Msa1028020:CDS |
GTTGTTCGTGCCCTCACTCA+AGG | 0.546614 | 7_1:-60562928 | Msa1028020:intron |
AGAAACTAGATTGAATTGAA+AGG | 0.548969 | 7_1:+60563059 | None:intergenic |
CAAGAGAAAGCCAATCTCTA+CGG | 0.553772 | 7_1:+60562145 | None:intergenic |
ATTCGCAGAGATCCAGTGAC+GGG | 0.560137 | 7_1:-60560570 | Msa1028020:intron |
GCCAGCAGAGGAAGTTCCAC+CGG | 0.563034 | 7_1:-60562217 | Msa1028020:CDS |
AAGATCTCTTCAACGGTACG+AGG | 0.564667 | 7_1:+60562979 | None:intergenic |
TTGATGTTTCATGGCTGAAA+AGG | 0.565075 | 7_1:-60560263 | Msa1028020:three_prime_UTR |
GAAACACTTTGCGGGAGCTG+TGG | 0.565640 | 7_1:-60560478 | Msa1028020:CDS |
TGATTCATGGTTGCTTTCTG+TGG | 0.570084 | 7_1:-60562109 | Msa1028020:CDS |
ACACTTTGCGGGAGCTGTGG+CGG | 0.573976 | 7_1:-60560475 | Msa1028020:CDS |
GATTGAATTGAAAGGACAGA+GGG | 0.581127 | 7_1:+60563067 | None:intergenic |
ATCTTTGAAGATCTCTTCAA+CGG | 0.581501 | 7_1:+60562972 | None:intergenic |
CCAAAGTTTCCTGTGGATGA+CGG | 0.582757 | 7_1:-60560532 | Msa1028020:CDS |
GAGCACAGTGAAACACTTTG+CGG | 0.584136 | 7_1:-60560487 | Msa1028020:CDS |
GATAAGAGTACCTTGAGTGA+GGG | 0.589329 | 7_1:+60562918 | None:intergenic |
GGATGACGGTTATGAGGAGG+AGG | 0.591224 | 7_1:-60560518 | Msa1028020:CDS |
CTCGTCTTAACCGCAATGAA+AGG | 0.595014 | 7_1:-60562071 | Msa1028020:intron |
TATGTGAGAGGTGGTACCAT+GGG | 0.596316 | 7_1:-60560414 | Msa1028020:CDS |
ACCATGAGAATGGATCAAAA+GGG | 0.597077 | 7_1:+60563095 | None:intergenic |
GTCACAATTTCGAAAACGGT+GGG | 0.600381 | 7_1:+60560738 | None:intergenic |
TTGAGTGAGGGCACGAACAA+CGG | 0.602596 | 7_1:+60562930 | None:intergenic |
TGTGAAGATCACTCCTGCCA+AGG | 0.609845 | 7_1:-60560386 | Msa1028020:CDS |
AGATAAGAGTACCTTGAGTG+AGG | 0.614546 | 7_1:+60562917 | None:intergenic |
AACAAGCCAGCAGCGGACAG+TGG | 0.616447 | 7_1:-60560693 | Msa1028020:CDS |
GCTGGCTCAGGGAGTTCCGG+TGG | 0.616538 | 7_1:+60562201 | None:intergenic |
TGATCTTCACACATTTCCCA+TGG | 0.618512 | 7_1:+60560398 | None:intergenic |
TGATTCCAAGAGCTGGCTCA+GGG | 0.623716 | 7_1:+60562190 | None:intergenic |
CGTAACCAACATGGAAGAGG+AGG | 0.631846 | 7_1:-60560094 | Msa1028020:three_prime_UTR |
GGAAGTAACTCTGCCAGCAG+AGG | 0.636663 | 7_1:-60562229 | Msa1028020:CDS |
GCCCTCAATGCAGCATCAGG+CGG | 0.644933 | 7_1:-60560339 | Msa1028020:CDS |
GGTCACAATTTCGAAAACGG+TGG | 0.656142 | 7_1:+60560737 | None:intergenic |
AAGCAACCCAAAGTTTCCTG+TGG | 0.656897 | 7_1:-60560539 | Msa1028020:CDS |
TTGGTTGTGATATATGTGAG+AGG | 0.665767 | 7_1:-60560426 | Msa1028020:CDS |
TGTGGATGACGGTTATGAGG+AGG | 0.666323 | 7_1:-60560521 | Msa1028020:CDS |
ACAACCAATCCAAAACTCGT+CGG | 0.669542 | 7_1:+60560441 | None:intergenic |
AGATCTCTTCAACGGTACGA+GGG | 0.670323 | 7_1:+60562980 | None:intergenic |
TATTCGCAGAGATCCAGTGA+CGG | 0.673421 | 7_1:-60560571 | Msa1028020:intron |
TAAGGACAACAAGCCAGCAG+CGG | 0.678184 | 7_1:-60560700 | Msa1028020:CDS |
ATAGAATGTACCTTTCATTG+CGG | 0.683230 | 7_1:+60562061 | None:intergenic |
GACAGTGGAAGCAAATCCCG+AGG | 0.687670 | 7_1:-60560678 | Msa1028020:CDS |
ATATGTGAGAGGTGGTACCA+TGG | 0.697894 | 7_1:-60560415 | Msa1028020:CDS |
AGATTGAATTGAAAGGACAG+AGG | 0.707782 | 7_1:+60563066 | None:intergenic |
CAAATCCCGAGGAAGCACCA+AGG | 0.723813 | 7_1:-60560667 | Msa1028020:intron |
GTTGTGATATATGTGAGAGG+TGG | 0.732743 | 7_1:-60560423 | Msa1028020:CDS |
ATTGAATTGAAAGGACAGAG+GGG | 0.734212 | 7_1:+60563068 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAAAAAAAAAAAAAAAA+CGG | - | chr7_1:60561780-60561799 | Msa1028020:intron | 0.0% |
!!! | TTTATACTTTTTGTTTTTAT+TGG | - | chr7_1:60560530-60560549 | Msa1028020:CDS | 10.0% |
!!! | TTTTAAAGAATTTAATTAGA+GGG | - | chr7_1:60560642-60560661 | Msa1028020:intron | 10.0% |
!!! | TTTTTTTTTTTTGACTAAAA+GGG | + | chr7_1:60561772-60561791 | None:intergenic | 10.0% |
!!! | TTTTTTTTTTTTTGACTAAA+AGG | + | chr7_1:60561773-60561792 | None:intergenic | 10.0% |
!! | AACAAAAACAATTACAAAAA+AGG | + | chr7_1:60560374-60560393 | None:intergenic | 15.0% |
!!! | GTTTTAAAGAATTTAATTAG+AGG | - | chr7_1:60560641-60560660 | Msa1028020:intron | 15.0% |
!!! | ACATTTAATTTTAGTTTATG+TGG | - | chr7_1:60560667-60560686 | Msa1028020:intron | 15.0% |
!!! | AATGTAATGTATTTGTTTTA+AGG | - | chr7_1:60560804-60560823 | Msa1028020:intron | 15.0% |
!!! | ACATTAAATTTTAGTTTATC+TGG | - | chr7_1:60560844-60560863 | Msa1028020:intron | 15.0% |
!!! | AAATGTGAATTATTTTAGAT+TGG | - | chr7_1:60561436-60561455 | Msa1028020:intron | 15.0% |
!!! | ATTTTTACTAGTATTATCAA+TGG | - | chr7_1:60561501-60561520 | Msa1028020:intron | 15.0% |
!!! | ATATATCACTTTTCTTTAAT+CGG | - | chr7_1:60562248-60562267 | Msa1028020:CDS | 15.0% |
!!! | AATTATTTTAGATTGGTGAT+GGG | - | chr7_1:60561443-60561462 | Msa1028020:intron | 20.0% |
!! | ATACTAGTAAAAATTGAAGT+AGG | + | chr7_1:60561495-60561514 | None:intergenic | 20.0% |
!! | ATTAGTATTACACAATAGAT+TGG | + | chr7_1:60561895-60561914 | None:intergenic | 20.0% |
!!! | TTATTATGTTTTTCCTCTTA+AGG | - | chr7_1:60562274-60562293 | Msa1028020:CDS | 20.0% |
!! | GTTATGTTCAAATTCATTAA+TGG | + | chr7_1:60563153-60563172 | None:intergenic | 20.0% |
! | AGAAACTAGATTGAATTGAA+AGG | + | chr7_1:60560154-60560173 | None:intergenic | 25.0% |
! | TATCTATCAAAATTCTCATC+TGG | - | chr7_1:60560311-60560330 | Msa1028020:exon | 25.0% |
! | ATCTATCAAAATTCTCATCT+GGG | - | chr7_1:60560312-60560331 | Msa1028020:exon | 25.0% |
!!! | TCAGATGTTGATGAATTTTA+CGG | - | chr7_1:60560406-60560425 | Msa1028020:CDS | 25.0% |
!! | TATTATGTGTGAATTTTGCA+TGG | - | chr7_1:60560577-60560596 | Msa1028020:intron | 25.0% |
!! | ATTTATGAGTGAATTTTGCA+TGG | - | chr7_1:60560777-60560796 | Msa1028020:intron | 25.0% |
!!! | TATCTGGTTTTATGATTGTT+AGG | - | chr7_1:60560860-60560879 | Msa1028020:intron | 25.0% |
!! | GTTTTGTGTTTGTTTAGATA+AGG | - | chr7_1:60560921-60560940 | Msa1028020:intron | 25.0% |
! | ATAGTTTCTAACACTAAACA+AGG | + | chr7_1:60561248-60561267 | None:intergenic | 25.0% |
! | TTGTTTAGTGTTAGAAACTA+TGG | - | chr7_1:60561247-60561266 | Msa1028020:intron | 25.0% |
! | TAGAAACTATGGCTTATAAT+TGG | - | chr7_1:60561258-60561277 | Msa1028020:intron | 25.0% |
!!! | ATTTGTTAATTTTCCTGACT+TGG | + | chr7_1:60561414-60561433 | None:intergenic | 25.0% |
!!! | GAATTATTTTAGATTGGTGA+TGG | - | chr7_1:60561442-60561461 | Msa1028020:intron | 25.0% |
! | GAAATACCAAAATTATATGG+CGG | + | chr7_1:60561557-60561576 | None:intergenic | 25.0% |
!!! | GCCATATAATTTTGGTATTT+CGG | - | chr7_1:60561556-60561575 | Msa1028020:intron | 25.0% |
! | AACAATGCAACTCATTAAAT+TGG | - | chr7_1:60561952-60561971 | Msa1028020:intron | 25.0% |
! | AACTCATTAAATTGGTATAG+TGG | - | chr7_1:60561960-60561979 | Msa1028020:intron | 25.0% |
!!! | TGTTATTTTAAGTCTTGCTT+AGG | + | chr7_1:60562148-60562167 | None:intergenic | 25.0% |
! | ACAAGTATATCACTAGAAAA+GGG | + | chr7_1:60562579-60562598 | None:intergenic | 25.0% |
! | AACAAGTATATCACTAGAAA+AGG | + | chr7_1:60562580-60562599 | None:intergenic | 25.0% |
!! | TAGTGATATACTTGTTTCTT+TGG | - | chr7_1:60562584-60562603 | Msa1028020:intron | 25.0% |
AATGAAGAACGTAGAGAAAA+GGG | + | chr7_1:60560082-60560101 | None:intergenic | 30.0% | |
AATTGAGATCTGAGAAAAAG+GGG | + | chr7_1:60560188-60560207 | None:intergenic | 30.0% | |
CAATTGAGATCTGAGAAAAA+GGG | + | chr7_1:60560189-60560208 | None:intergenic | 30.0% | |
! | CTTTTTCTCAGATCTCAATT+GGG | - | chr7_1:60560188-60560207 | Msa1028020:three_prime_UTR | 30.0% |
! | ATCTTTGAAGATCTCTTCAA+CGG | + | chr7_1:60560241-60560260 | None:intergenic | 30.0% |
!!! | TCATCTGGGTCTTTTTTTTT+CGG | - | chr7_1:60560326-60560345 | Msa1028020:exon | 30.0% |
! | TGTTGTTGTTGAATTTGACT+AGG | - | chr7_1:60560604-60560623 | Msa1028020:intron | 30.0% |
! | GTTGTTGTTGAATTTGACTA+GGG | - | chr7_1:60560605-60560624 | Msa1028020:intron | 30.0% |
GTGTTGTGTTTGTTTAGATA+AGG | - | chr7_1:60560740-60560759 | Msa1028020:CDS | 30.0% | |
!!! | GTTTTAAGGAGTTTGATTAG+AGG | - | chr7_1:60560818-60560837 | Msa1028020:intron | 30.0% |
! | AAGGATAATTTGTGTCTCTA+TGG | - | chr7_1:60560940-60560959 | Msa1028020:intron | 30.0% |
ATGGTCATAATAATGAAAGC+TGG | - | chr7_1:60560959-60560978 | Msa1028020:intron | 30.0% | |
TGGTCATAATAATGAAAGCT+GGG | - | chr7_1:60560960-60560979 | Msa1028020:intron | 30.0% | |
ATAGAATGTACCTTTCATTG+CGG | + | chr7_1:60561152-60561171 | None:intergenic | 30.0% | |
!! | TCAATGACAATGACTGATTT+TGG | - | chr7_1:60561524-60561543 | Msa1028020:intron | 30.0% |
GCCGAAATACCAAAATTATA+TGG | + | chr7_1:60561560-60561579 | None:intergenic | 30.0% | |
! | CATTTTATGGTTGATTACAG+AGG | + | chr7_1:60561634-60561653 | None:intergenic | 30.0% |
AACTTTCATGCTGCATAAAA+AGG | + | chr7_1:60561682-60561701 | None:intergenic | 30.0% | |
CAAATACAAGAACAGTGAAA+AGG | + | chr7_1:60561818-60561837 | None:intergenic | 30.0% | |
TTACACAATAGATTGGACAA+GGG | + | chr7_1:60561888-60561907 | None:intergenic | 30.0% | |
ATTACACAATAGATTGGACA+AGG | + | chr7_1:60561889-60561908 | None:intergenic | 30.0% | |
!! | AGGTTTTATGATGTTGATTG+TGG | + | chr7_1:60562128-60562147 | None:intergenic | 30.0% |
!! | TATCACTTTTCTTTAATCGG+TGG | - | chr7_1:60562251-60562270 | Msa1028020:CDS | 30.0% |
CAATGAATACACTCAATCTA+AGG | + | chr7_1:60562343-60562362 | None:intergenic | 30.0% | |
TAGATTGAGTGTATTCATTG+TGG | - | chr7_1:60562343-60562362 | Msa1028020:intron | 30.0% | |
!! | CTTTTACGTTTGACTTTAGT+AGG | - | chr7_1:60563018-60563037 | Msa1028020:exon | 30.0% |
! | CATTGTTGTCATCAAGTTTT+TGG | + | chr7_1:60563175-60563194 | None:intergenic | 30.0% |
! | GTAGTGTGTGTTTGTTACTA+AGG | + | chr7_1:60560038-60560057 | None:intergenic | 35.0% |
!! | AAAGGGTGTGTTTTTGTACT+AGG | + | chr7_1:60560065-60560084 | None:intergenic | 35.0% |
GAATGAAGAACGTAGAGAAA+AGG | + | chr7_1:60560083-60560102 | None:intergenic | 35.0% | |
ACCATGAGAATGGATCAAAA+GGG | + | chr7_1:60560118-60560137 | None:intergenic | 35.0% | |
AACCATGAGAATGGATCAAA+AGG | + | chr7_1:60560119-60560138 | None:intergenic | 35.0% | |
ATTGAATTGAAAGGACAGAG+GGG | + | chr7_1:60560145-60560164 | None:intergenic | 35.0% | |
GATTGAATTGAAAGGACAGA+GGG | + | chr7_1:60560146-60560165 | None:intergenic | 35.0% | |
AGATTGAATTGAAAGGACAG+AGG | + | chr7_1:60560147-60560166 | None:intergenic | 35.0% | |
CCAATTGAGATCTGAGAAAA+AGG | + | chr7_1:60560190-60560209 | None:intergenic | 35.0% | |
! | CCTTTTTCTCAGATCTCAAT+TGG | - | chr7_1:60560187-60560206 | Msa1028020:three_prime_UTR | 35.0% |
TCTCAATTGGGTTATGGAAA+TGG | - | chr7_1:60560200-60560219 | Msa1028020:three_prime_UTR | 35.0% | |
ATCCAGGTAAAGTGTATTAG+CGG | - | chr7_1:60560437-60560456 | Msa1028020:CDS | 35.0% | |
AGGTACATTCTATCTTGCTT+TGG | - | chr7_1:60561159-60561178 | Msa1028020:intron | 35.0% | |
TACATTCTATCTTGCTTTGG+TGG | - | chr7_1:60561162-60561181 | Msa1028020:intron | 35.0% | |
TTGGTGGAGATGTTTGTATA+TGG | - | chr7_1:60561178-60561197 | Msa1028020:intron | 35.0% | |
GTCGTAATTGAAGTTCTTTG+TGG | - | chr7_1:60561200-60561219 | Msa1028020:intron | 35.0% | |
TGGCTTATAATTGGAGTATG+TGG | - | chr7_1:60561267-60561286 | Msa1028020:intron | 35.0% | |
!! | GTTTTGTTGATATGTGATGC+TGG | - | chr7_1:60561307-60561326 | Msa1028020:intron | 35.0% |
! | GACAATCCGCCATATAATTT+TGG | - | chr7_1:60561548-60561567 | Msa1028020:intron | 35.0% |
! | ACCATAAAATGTGATGACGT+AGG | - | chr7_1:60561643-60561662 | Msa1028020:intron | 35.0% |
! | TCCTACGTCATCACATTTTA+TGG | + | chr7_1:60561647-60561666 | None:intergenic | 35.0% |
! | TAAAATGTGATGACGTAGGA+AGG | - | chr7_1:60561647-60561666 | Msa1028020:intron | 35.0% |
ATGAAAGTTGTGACTTTGGT+TGG | - | chr7_1:60561693-60561712 | Msa1028020:intron | 35.0% | |
TGAAAGTTGTGACTTTGGTT+GGG | - | chr7_1:60561694-60561713 | Msa1028020:intron | 35.0% | |
CATAGAATGTGACAACTTCT+TGG | + | chr7_1:60561721-60561740 | None:intergenic | 35.0% | |
GTATCCTCAATCTTAATCCA+TGG | - | chr7_1:60561860-60561879 | Msa1028020:intron | 35.0% | |
TATGACAACGACTCTGTTAT+AGG | - | chr7_1:60562007-60562026 | Msa1028020:intron | 35.0% | |
CACATTTGAGTGTGAATGTT+TGG | + | chr7_1:60562046-60562065 | None:intergenic | 35.0% | |
ATTTCACACTTTAGCAACTG+AGG | + | chr7_1:60562071-60562090 | None:intergenic | 35.0% | |
ATTGAAGAGAAAGCCTTAAG+AGG | + | chr7_1:60562290-60562309 | None:intergenic | 35.0% | |
CAGATGGTTCCTTATATTGA+TGG | - | chr7_1:60562396-60562415 | Msa1028020:intron | 35.0% | |
TCAGGGAAACCATCAATATA+AGG | + | chr7_1:60562408-60562427 | None:intergenic | 35.0% | |
ATGGTTTCCCTGATTCTTTA+TGG | - | chr7_1:60562415-60562434 | Msa1028020:intron | 35.0% | |
TTTCCTGCCATAAAGAATCA+GGG | + | chr7_1:60562425-60562444 | None:intergenic | 35.0% | |
AAAAGGGAAAACACTAACCT+TGG | + | chr7_1:60562563-60562582 | None:intergenic | 35.0% | |
!!! | TTTGGTTCTTTTGACTCGTT+AGG | - | chr7_1:60562602-60562621 | Msa1028020:intron | 35.0% |
TTGGTTGTGATATATGTGAG+AGG | - | chr7_1:60562784-60562803 | Msa1028020:intron | 35.0% | |
CTTGTATTGCTTTATGCTCT+CGG | + | chr7_1:60562850-60562869 | None:intergenic | 35.0% | |
TCCAAATTGCCTTGAAACTA+GGG | + | chr7_1:60562903-60562922 | None:intergenic | 35.0% | |
TTCCAAATTGCCTTGAAACT+AGG | + | chr7_1:60562904-60562923 | None:intergenic | 35.0% | |
CAGAAGTGATTGATGTTTCA+TGG | - | chr7_1:60562938-60562957 | Msa1028020:CDS | 35.0% | |
TTGATGTTTCATGGCTGAAA+AGG | - | chr7_1:60562947-60562966 | Msa1028020:CDS | 35.0% | |
! | ACCCTTTTGATCCATTCTCA+TGG | - | chr7_1:60560114-60560133 | Msa1028020:three_prime_UTR | 40.0% |
GAGAAAAAGGGGTTTGGATT+TGG | + | chr7_1:60560177-60560196 | None:intergenic | 40.0% | |
AGATCTGAGAAAAAGGGGTT+TGG | + | chr7_1:60560183-60560202 | None:intergenic | 40.0% | |
CTCAGATCTCAATTGGGTTA+TGG | - | chr7_1:60560194-60560213 | Msa1028020:three_prime_UTR | 40.0% | |
!! | GATAAGAGTACCTTGAGTGA+GGG | + | chr7_1:60560295-60560314 | None:intergenic | 40.0% |
!! | AGATAAGAGTACCTTGAGTG+AGG | + | chr7_1:60560296-60560315 | None:intergenic | 40.0% |
ATCCGCTAATACACTTTACC+TGG | + | chr7_1:60560442-60560461 | None:intergenic | 40.0% | |
! | GCAAAATTGATTCCAAGAGC+TGG | + | chr7_1:60561030-60561049 | None:intergenic | 40.0% |
! | GGAATCAATTTTGCTCGAGA+CGG | - | chr7_1:60561036-60561055 | Msa1028020:intron | 40.0% |
CAAGAGAAAGCCAATCTCTA+CGG | + | chr7_1:60561068-60561087 | None:intergenic | 40.0% | |
! | TGATTCATGGTTGCTTTCTG+TGG | - | chr7_1:60561101-60561120 | Msa1028020:intron | 40.0% |
GTTGATATGTGATGCTGGAT+TGG | - | chr7_1:60561312-60561331 | Msa1028020:intron | 40.0% | |
! | GGATTGGTACATACATGCAT+TGG | - | chr7_1:60561328-60561347 | Msa1028020:intron | 40.0% |
GCTAATGTTGCTCGTAACAT+AGG | + | chr7_1:60561385-60561404 | None:intergenic | 40.0% | |
!! | AATTTTGGTATTTCGGCCGA+TGG | - | chr7_1:60561563-60561582 | Msa1028020:intron | 40.0% |
AGGCAGATAAAGTAAGCCAT+CGG | + | chr7_1:60561582-60561601 | None:intergenic | 40.0% | |
ATGGCTTACTTTATCTGCCT+TGG | - | chr7_1:60561582-60561601 | Msa1028020:intron | 40.0% | |
CAGCATGAAAGTTGTGACTT+TGG | - | chr7_1:60561689-60561708 | Msa1028020:intron | 40.0% | |
GAAAGTTGTGACTTTGGTTG+GGG | - | chr7_1:60561695-60561714 | Msa1028020:intron | 40.0% | |
GGATACTTGAGACTAAGAGA+AGG | + | chr7_1:60561846-60561865 | None:intergenic | 40.0% | |
ATTCTCAGAGTCGATGGATA+AGG | + | chr7_1:60561927-60561946 | None:intergenic | 40.0% | |
!! | TTATCCATCGACTCTGAGAA+TGG | - | chr7_1:60561926-60561945 | Msa1028020:intron | 40.0% |
TTTCCCTGATTCTTTATGGC+AGG | - | chr7_1:60562419-60562438 | Msa1028020:intron | 40.0% | |
GTTTCCTGCCATAAAGAATC+AGG | + | chr7_1:60562426-60562445 | None:intergenic | 40.0% | |
GTCACAATTTCGAAAACGGT+GGG | + | chr7_1:60562475-60562494 | None:intergenic | 40.0% | |
GTCGGTCACAATTTCGAAAA+CGG | + | chr7_1:60562479-60562498 | None:intergenic | 40.0% | |
! | TTTTCGAAATTGTGACCGAC+AGG | - | chr7_1:60562479-60562498 | Msa1028020:intron | 40.0% |
! | GTCCTTAATTGGTTTCCTGT+CGG | + | chr7_1:60562497-60562516 | None:intergenic | 40.0% |
! | ATTACAATGCCGACGAGTTT+TGG | - | chr7_1:60562760-60562779 | Msa1028020:intron | 40.0% |
ACAACCAATCCAAAACTCGT+CGG | + | chr7_1:60562772-60562791 | None:intergenic | 40.0% | |
GTTGTGATATATGTGAGAGG+TGG | - | chr7_1:60562787-60562806 | Msa1028020:intron | 40.0% | |
TGATCTTCACACATTTCCCA+TGG | + | chr7_1:60562815-60562834 | None:intergenic | 40.0% | |
ACCCTAGTTTCAAGGCAATT+TGG | - | chr7_1:60562899-60562918 | Msa1028020:intron | 40.0% | |
! | CCATGTTGGTTACGGAAAAA+TGG | + | chr7_1:60563110-60563129 | None:intergenic | 40.0% |
!! | CCATTTTTCCGTAACCAACA+TGG | - | chr7_1:60563107-60563126 | Msa1028020:five_prime_UTR | 40.0% |
AGATCTCTTCAACGGTACGA+GGG | + | chr7_1:60560233-60560252 | None:intergenic | 45.0% | |
AAGATCTCTTCAACGGTACG+AGG | + | chr7_1:60560234-60560253 | None:intergenic | 45.0% | |
! | TTTTACGGTCTCTGTGATCC+AGG | - | chr7_1:60560421-60560440 | Msa1028020:CDS | 45.0% |
ACGGTATGAACCGTAGAGAT+TGG | - | chr7_1:60561055-60561074 | Msa1028020:intron | 45.0% | |
TTGCTGTGCACAGTGATTCA+TGG | - | chr7_1:60561088-60561107 | Msa1028020:intron | 45.0% | |
CTTTCTGTGGCGTTCTATCT+TGG | - | chr7_1:60561114-60561133 | Msa1028020:intron | 45.0% | |
CTCGTCTTAACCGCAATGAA+AGG | - | chr7_1:60561139-60561158 | Msa1028020:intron | 45.0% | |
GTTACGAGCAACATTAGCTG+AGG | - | chr7_1:60561387-60561406 | Msa1028020:intron | 45.0% | |
GTGTTGTCAAATTGCTGCCA+AGG | + | chr7_1:60561602-60561621 | None:intergenic | 45.0% | |
! | GGAGCCATGGATTAAGATTG+AGG | + | chr7_1:60561867-60561886 | None:intergenic | 45.0% |
ATCTGCTGCAACTTCACAGA+TGG | - | chr7_1:60562380-60562399 | Msa1028020:intron | 45.0% | |
GGTCACAATTTCGAAAACGG+TGG | + | chr7_1:60562476-60562495 | None:intergenic | 45.0% | |
GACCGACAGGAAACCAATTA+AGG | - | chr7_1:60562492-60562511 | Msa1028020:intron | 45.0% | |
!! | GCTGGCTTGTTGTCCTTAAT+TGG | + | chr7_1:60562508-60562527 | None:intergenic | 45.0% |
CACTGGATCTCTGCGAATAA+AGG | + | chr7_1:60562638-60562657 | None:intergenic | 45.0% | |
TATTCGCAGAGATCCAGTGA+CGG | - | chr7_1:60562639-60562658 | Msa1028020:intron | 45.0% | |
AAGCAACCCAAAGTTTCCTG+TGG | - | chr7_1:60562671-60562690 | Msa1028020:intron | 45.0% | |
CGTCATCCACAGGAAACTTT+GGG | + | chr7_1:60562680-60562699 | None:intergenic | 45.0% | |
CCAAAGTTTCCTGTGGATGA+CGG | - | chr7_1:60562678-60562697 | Msa1028020:intron | 45.0% | |
GAGCACAGTGAAACACTTTG+CGG | - | chr7_1:60562723-60562742 | Msa1028020:intron | 45.0% | |
AGCACAGTGAAACACTTTGC+GGG | - | chr7_1:60562724-60562743 | Msa1028020:intron | 45.0% | |
!!! | AATGCCGACGAGTTTTGGAT+TGG | - | chr7_1:60562765-60562784 | Msa1028020:intron | 45.0% |
ATATGTGAGAGGTGGTACCA+TGG | - | chr7_1:60562795-60562814 | Msa1028020:CDS | 45.0% | |
TATGTGAGAGGTGGTACCAT+GGG | - | chr7_1:60562796-60562815 | Msa1028020:CDS | 45.0% | |
TTCCGTAACCAACATGGAAG+AGG | - | chr7_1:60563113-60563132 | Msa1028020:five_prime_UTR | 45.0% | |
! | CTCCTCTTCCATGTTGGTTA+CGG | + | chr7_1:60563118-60563137 | None:intergenic | 45.0% |
!! | AAAAAAAAAAAAAAAAAAAC+GGG | - | chr7_1:60561788-60561807 | Msa1028020:intron | 5.0% |
GAGGGGTGAAACCATGAGAA+TGG | + | chr7_1:60560128-60560147 | None:intergenic | 50.0% | |
! | TTGAGTGAGGGCACGAACAA+CGG | + | chr7_1:60560283-60560302 | None:intergenic | 50.0% |
! | TGATTCCAAGAGCTGGCTCA+GGG | + | chr7_1:60561023-60561042 | None:intergenic | 50.0% |
! | TTGATTCCAAGAGCTGGCTC+AGG | + | chr7_1:60561024-60561043 | None:intergenic | 50.0% |
CATTAGCTGAGGTCCAAGTC+AGG | - | chr7_1:60561398-60561417 | Msa1028020:intron | 50.0% | |
TAGATTGGACAAGGGAGCCA+TGG | + | chr7_1:60561880-60561899 | None:intergenic | 50.0% | |
GAGTCGATGGATAAGGTCAG+TGG | + | chr7_1:60561920-60561939 | None:intergenic | 50.0% | |
TGCTCCATTCTCAGAGTCGA+TGG | + | chr7_1:60561933-60561952 | None:intergenic | 50.0% | |
GTTGTCATACCAGCAGACAG+CGG | + | chr7_1:60561996-60562015 | None:intergenic | 50.0% | |
GTGTGAATGTTTGGCAGTGC+AGG | + | chr7_1:60562037-60562056 | None:intergenic | 50.0% | |
TAAGGACAACAAGCCAGCAG+CGG | - | chr7_1:60562510-60562529 | Msa1028020:intron | 50.0% | |
!! | ACTAACCTTGGTGCTTCCTC+GGG | + | chr7_1:60562551-60562570 | None:intergenic | 50.0% |
!! | CACTAACCTTGGTGCTTCCT+CGG | + | chr7_1:60562552-60562571 | None:intergenic | 50.0% |
ATTCGCAGAGATCCAGTGAC+GGG | - | chr7_1:60562640-60562659 | Msa1028020:intron | 50.0% | |
CCGTCATCCACAGGAAACTT+TGG | + | chr7_1:60562681-60562700 | None:intergenic | 50.0% | |
! | TCCTGTGGATGACGGTTATG+AGG | - | chr7_1:60562686-60562705 | Msa1028020:intron | 50.0% |
TCCTCATAACCGTCATCCAC+AGG | + | chr7_1:60562690-60562709 | None:intergenic | 50.0% | |
! | TGTGGATGACGGTTATGAGG+AGG | - | chr7_1:60562689-60562708 | Msa1028020:intron | 50.0% |
TGTGAAGATCACTCCTGCCA+AGG | - | chr7_1:60562824-60562843 | Msa1028020:intron | 50.0% | |
TTGCTTTATGCTCTCGGCCT+TGG | + | chr7_1:60562844-60562863 | None:intergenic | 50.0% | |
CGGAACAGACCCTAGTTTCA+AGG | - | chr7_1:60562891-60562910 | Msa1028020:intron | 50.0% | |
CGTAACCAACATGGAAGAGG+AGG | - | chr7_1:60563116-60563135 | Msa1028020:five_prime_UTR | 50.0% | |
CTATGCCTCCTCTTCCATGT+TGG | + | chr7_1:60563124-60563143 | None:intergenic | 50.0% | |
GTTGTTCGTGCCCTCACTCA+AGG | - | chr7_1:60560282-60560301 | Msa1028020:three_prime_UTR | 55.0% | |
GGAAGTAACTCTGCCAGCAG+AGG | - | chr7_1:60560981-60561000 | Msa1028020:intron | 55.0% | |
TTGTAGTCACCGCTGTCTGC+TGG | - | chr7_1:60561984-60562003 | Msa1028020:intron | 55.0% | |
GACAGTGGAAGCAAATCCCG+AGG | - | chr7_1:60562532-60562551 | Msa1028020:intron | 55.0% | |
!! | CAAATCCCGAGGAAGCACCA+AGG | - | chr7_1:60562543-60562562 | Msa1028020:intron | 55.0% |
!!! | GCTTTTGACTTGCCCGTCAC+TGG | + | chr7_1:60562655-60562674 | None:intergenic | 55.0% |
! | GGATGACGGTTATGAGGAGG+AGG | - | chr7_1:60562692-60562711 | Msa1028020:intron | 55.0% |
TGACGGTTATGAGGAGGAGG+AGG | - | chr7_1:60562695-60562714 | Msa1028020:intron | 55.0% | |
GAAACACTTTGCGGGAGCTG+TGG | - | chr7_1:60562732-60562751 | Msa1028020:intron | 55.0% | |
TTTATGCTCTCGGCCTTGGC+AGG | + | chr7_1:60562840-60562859 | None:intergenic | 55.0% | |
AGTGCCCTCAATGCAGCATC+AGG | - | chr7_1:60562868-60562887 | Msa1028020:intron | 55.0% | |
TCCGCCTGATGCTGCATTGA+GGG | + | chr7_1:60562875-60562894 | None:intergenic | 55.0% | |
TTCCGCCTGATGCTGCATTG+AGG | + | chr7_1:60562876-60562895 | None:intergenic | 55.0% | |
GCCAGCAGAGGAAGTTCCAC+CGG | - | chr7_1:60560993-60561012 | Msa1028020:intron | 60.0% | |
TCCGGTGGAACTTCCTCTGC+TGG | + | chr7_1:60560997-60561016 | None:intergenic | 60.0% | |
! | AGAGCTGGCTCAGGGAGTTC+CGG | + | chr7_1:60561015-60561034 | None:intergenic | 60.0% |
GAACTCCCTGAGCCAGCTCT+TGG | - | chr7_1:60561015-60561034 | Msa1028020:intron | 60.0% | |
AACAAGCCAGCAGCGGACAG+TGG | - | chr7_1:60562517-60562536 | Msa1028020:intron | 60.0% | |
TTGCTTCCACTGTCCGCTGC+TGG | + | chr7_1:60562526-60562545 | None:intergenic | 60.0% | |
ACACTTTGCGGGAGCTGTGG+CGG | - | chr7_1:60562735-60562754 | Msa1028020:intron | 60.0% | |
GCCCTCAATGCAGCATCAGG+CGG | - | chr7_1:60562871-60562890 | Msa1028020:intron | 60.0% | |
! | GCTGGCTCAGGGAGTTCCGG+TGG | + | chr7_1:60561012-60561031 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_1 | gene | 60560024 | 60563208 | 60560024 | ID=Msa1028020;Name=Msa1028020 |
chr7_1 | mRNA | 60560024 | 60563208 | 60560024 | ID=Msa1028020-mRNA-1;Parent=Msa1028020;Name=Msa1028020-mRNA-1;_AED=0.05;_eAED=0.05;_QI=189|1|1|1|1|1|5|303|242 |
chr7_1 | exon | 60560024 | 60560584 | 60560024 | ID=Msa1028020-mRNA-1:exon:12602;Parent=Msa1028020-mRNA-1 |
chr7_1 | exon | 60560668 | 60560791 | 60560668 | ID=Msa1028020-mRNA-1:exon:12601;Parent=Msa1028020-mRNA-1 |
chr7_1 | exon | 60562072 | 60562294 | 60562072 | ID=Msa1028020-mRNA-1:exon:12600;Parent=Msa1028020-mRNA-1 |
chr7_1 | exon | 60562790 | 60562822 | 60562790 | ID=Msa1028020-mRNA-1:exon:12599;Parent=Msa1028020-mRNA-1 |
chr7_1 | exon | 60562929 | 60563208 | 60562929 | ID=Msa1028020-mRNA-1:exon:12598;Parent=Msa1028020-mRNA-1 |
chr7_1 | five_prime_UTR | 60563020 | 60563208 | 60563020 | ID=Msa1028020-mRNA-1:five_prime_utr;Parent=Msa1028020-mRNA-1 |
chr7_1 | CDS | 60562929 | 60563019 | 60562929 | ID=Msa1028020-mRNA-1:cds;Parent=Msa1028020-mRNA-1 |
chr7_1 | CDS | 60562790 | 60562822 | 60562790 | ID=Msa1028020-mRNA-1:cds;Parent=Msa1028020-mRNA-1 |
chr7_1 | CDS | 60562072 | 60562294 | 60562072 | ID=Msa1028020-mRNA-1:cds;Parent=Msa1028020-mRNA-1 |
chr7_1 | CDS | 60560668 | 60560791 | 60560668 | ID=Msa1028020-mRNA-1:cds;Parent=Msa1028020-mRNA-1 |
chr7_1 | CDS | 60560327 | 60560584 | 60560327 | ID=Msa1028020-mRNA-1:cds;Parent=Msa1028020-mRNA-1 |
chr7_1 | three_prime_UTR | 60560024 | 60560326 | 60560024 | ID=Msa1028020-mRNA-1:three_prime_utr;Parent=Msa1028020-mRNA-1 |
Gene Sequence |
Protein sequence |