AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1028020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1028020 MtrunA17_Chr7g0242511 100.000 242 0 0 1 242 1 242 0.0 503
Msa1028020 MtrunA17_Chr4g0006381 90.984 244 18 3 1 242 1 242 1.83e-144 403
Msa1028020 MtrunA17_Chr4g0076771 61.355 251 87 4 1 241 4 254 1.03e-91 270
Msa1028020 MtrunA17_Chr8g0343441 57.831 249 93 5 6 242 8 256 4.10e-88 261
Msa1028020 MtrunA17_Chr1g0150821 59.459 259 79 5 6 242 9 263 7.55e-85 253
Msa1028020 MtrunA17_Chr2g0300241 56.538 260 88 6 1 242 1 253 9.71e-85 253
Msa1028020 MtrunA17_Chr2g0329821 56.557 244 96 4 3 236 1 244 5.81e-82 245
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1028020 AT5G05610.2 73.950 238 60 1 4 241 5 240 1.34e-116 333
Msa1028020 AT5G05610.1 73.950 238 60 1 4 241 5 240 1.34e-116 333
Msa1028020 AT3G11200.1 77.083 240 54 1 3 241 6 245 3.41e-115 330
Msa1028020 AT3G11200.2 75.481 208 50 1 35 241 25 232 1.83e-97 284
Msa1028020 AT3G42790.1 62.397 242 84 5 6 241 9 249 7.96e-93 273
Msa1028020 AT5G20510.1 59.127 252 88 4 6 242 9 260 7.77e-88 261
Msa1028020 AT2G02470.1 60.484 248 86 4 7 242 9 256 8.39e-88 261
Msa1028020 AT2G02470.2 59.336 241 91 3 7 242 9 247 2.22e-85 254
Msa1028020 AT1G14510.1 58.333 240 93 4 7 239 9 248 1.35e-82 247
Msa1028020 AT5G26210.1 57.430 249 95 4 4 241 6 254 3.03e-77 234
Msa1028020 AT5G20510.2 59.722 216 72 4 42 242 4 219 4.36e-69 212
Msa1028020 AT5G20510.3 61.875 160 56 3 6 160 9 168 1.73e-55 176
Msa1028020 AT2G02470.3 62.179 156 57 1 7 160 9 164 5.76e-55 177

Find 93 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAATTGAGATCTGAGAAAA+AGG 0.208498 7_1:+60563023 None:intergenic
GCTGGCTTGTTGTCCTTAAT+TGG 0.215056 7_1:+60560705 None:intergenic
GTTATGTTCAAATTCATTAA+TGG 0.247598 7_1:+60560060 None:intergenic
ATTACAATGCCGACGAGTTT+TGG 0.256361 7_1:-60560450 Msa1028020:CDS
ACCCTAGTTTCAAGGCAATT+TGG 0.262098 7_1:-60560311 Msa1028020:exon
CTTTCTGTGGCGTTCTATCT+TGG 0.287893 7_1:-60562096 Msa1028020:CDS
CTCAGATCTCAATTGGGTTA+TGG 0.316236 7_1:-60563016 Msa1028020:exon
TTGCTGTGCACAGTGATTCA+TGG 0.330962 7_1:-60562122 Msa1028020:CDS
AAGGATAATTTGTGTCTCTA+TGG 0.357930 7_1:-60562270 Msa1028020:CDS
CTTGTATTGCTTTATGCTCT+CGG 0.362549 7_1:+60560363 None:intergenic
GACCGACAGGAAACCAATTA+AGG 0.374595 7_1:-60560718 Msa1028020:CDS
TTGCTTCCACTGTCCGCTGC+TGG 0.382118 7_1:+60560687 None:intergenic
CCGTCATCCACAGGAAACTT+TGG 0.383878 7_1:+60560532 None:intergenic
CAGAAGTGATTGATGTTTCA+TGG 0.385906 7_1:-60560272 Msa1028020:three_prime_UTR
CTCCTCTTCCATGTTGGTTA+CGG 0.386470 7_1:+60560095 None:intergenic
AGAGCTGGCTCAGGGAGTTC+CGG 0.393745 7_1:+60562198 None:intergenic
TCTCAATTGGGTTATGGAAA+TGG 0.397199 7_1:-60563010 Msa1028020:exon
CACTAACCTTGGTGCTTCCT+CGG 0.397306 7_1:+60560661 None:intergenic
GAATGAAGAACGTAGAGAAA+AGG 0.397720 7_1:+60563130 None:intergenic
TTGCTTTATGCTCTCGGCCT+TGG 0.413678 7_1:+60560369 None:intergenic
TCCAAATTGCCTTGAAACTA+GGG 0.422250 7_1:+60560310 None:intergenic
AACCATGAGAATGGATCAAA+AGG 0.425090 7_1:+60563094 None:intergenic
CGTCATCCACAGGAAACTTT+GGG 0.432337 7_1:+60560533 None:intergenic
TTCCAAATTGCCTTGAAACT+AGG 0.434244 7_1:+60560309 None:intergenic
GAACTCCCTGAGCCAGCTCT+TGG 0.435136 7_1:-60562195 Msa1028020:CDS
TCCTGTGGATGACGGTTATG+AGG 0.442634 7_1:-60560524 Msa1028020:CDS
AGCACAGTGAAACACTTTGC+GGG 0.443628 7_1:-60560486 Msa1028020:CDS
TCCGCCTGATGCTGCATTGA+GGG 0.446153 7_1:+60560338 None:intergenic
AATGAAGAACGTAGAGAAAA+GGG 0.451067 7_1:+60563131 None:intergenic
TTTATGCTCTCGGCCTTGGC+AGG 0.451134 7_1:+60560373 None:intergenic
TCCGGTGGAACTTCCTCTGC+TGG 0.464747 7_1:+60562216 None:intergenic
AGTGCCCTCAATGCAGCATC+AGG 0.465718 7_1:-60560342 Msa1028020:CDS
GTAGTGTGTGTTTGTTACTA+AGG 0.465827 7_1:+60563175 None:intergenic
ACTAACCTTGGTGCTTCCTC+GGG 0.472237 7_1:+60560662 None:intergenic
TTGATTCCAAGAGCTGGCTC+AGG 0.473652 7_1:+60562189 None:intergenic
ATGGTCATAATAATGAAAGC+TGG 0.475692 7_1:-60562251 Msa1028020:CDS
ACGGTATGAACCGTAGAGAT+TGG 0.485613 7_1:-60562155 Msa1028020:CDS
CGGAACAGACCCTAGTTTCA+AGG 0.486474 7_1:-60560319 Msa1028020:exon
GTCGGTCACAATTTCGAAAA+CGG 0.493814 7_1:+60560734 None:intergenic
GTCCTTAATTGGTTTCCTGT+CGG 0.494680 7_1:+60560716 None:intergenic
TTCCGTAACCAACATGGAAG+AGG 0.502923 7_1:-60560097 Msa1028020:three_prime_UTR
TTCCGCCTGATGCTGCATTG+AGG 0.510891 7_1:+60560337 None:intergenic
TGACGGTTATGAGGAGGAGG+AGG 0.514089 7_1:-60560515 Msa1028020:CDS
GAGGGGTGAAACCATGAGAA+TGG 0.516703 7_1:+60563085 None:intergenic
CTATGCCTCCTCTTCCATGT+TGG 0.517830 7_1:+60560089 None:intergenic
GCAAAATTGATTCCAAGAGC+TGG 0.521530 7_1:+60562183 None:intergenic
TCCTCATAACCGTCATCCAC+AGG 0.530396 7_1:+60560523 None:intergenic
TGGTCATAATAATGAAAGCT+GGG 0.544113 7_1:-60562250 Msa1028020:CDS
GTTGTTCGTGCCCTCACTCA+AGG 0.546614 7_1:-60562928 Msa1028020:intron
AGAAACTAGATTGAATTGAA+AGG 0.548969 7_1:+60563059 None:intergenic
CAAGAGAAAGCCAATCTCTA+CGG 0.553772 7_1:+60562145 None:intergenic
ATTCGCAGAGATCCAGTGAC+GGG 0.560137 7_1:-60560570 Msa1028020:intron
GCCAGCAGAGGAAGTTCCAC+CGG 0.563034 7_1:-60562217 Msa1028020:CDS
AAGATCTCTTCAACGGTACG+AGG 0.564667 7_1:+60562979 None:intergenic
TTGATGTTTCATGGCTGAAA+AGG 0.565075 7_1:-60560263 Msa1028020:three_prime_UTR
GAAACACTTTGCGGGAGCTG+TGG 0.565640 7_1:-60560478 Msa1028020:CDS
TGATTCATGGTTGCTTTCTG+TGG 0.570084 7_1:-60562109 Msa1028020:CDS
ACACTTTGCGGGAGCTGTGG+CGG 0.573976 7_1:-60560475 Msa1028020:CDS
GATTGAATTGAAAGGACAGA+GGG 0.581127 7_1:+60563067 None:intergenic
ATCTTTGAAGATCTCTTCAA+CGG 0.581501 7_1:+60562972 None:intergenic
CCAAAGTTTCCTGTGGATGA+CGG 0.582757 7_1:-60560532 Msa1028020:CDS
GAGCACAGTGAAACACTTTG+CGG 0.584136 7_1:-60560487 Msa1028020:CDS
GATAAGAGTACCTTGAGTGA+GGG 0.589329 7_1:+60562918 None:intergenic
GGATGACGGTTATGAGGAGG+AGG 0.591224 7_1:-60560518 Msa1028020:CDS
CTCGTCTTAACCGCAATGAA+AGG 0.595014 7_1:-60562071 Msa1028020:intron
TATGTGAGAGGTGGTACCAT+GGG 0.596316 7_1:-60560414 Msa1028020:CDS
ACCATGAGAATGGATCAAAA+GGG 0.597077 7_1:+60563095 None:intergenic
GTCACAATTTCGAAAACGGT+GGG 0.600381 7_1:+60560738 None:intergenic
TTGAGTGAGGGCACGAACAA+CGG 0.602596 7_1:+60562930 None:intergenic
TGTGAAGATCACTCCTGCCA+AGG 0.609845 7_1:-60560386 Msa1028020:CDS
AGATAAGAGTACCTTGAGTG+AGG 0.614546 7_1:+60562917 None:intergenic
AACAAGCCAGCAGCGGACAG+TGG 0.616447 7_1:-60560693 Msa1028020:CDS
GCTGGCTCAGGGAGTTCCGG+TGG 0.616538 7_1:+60562201 None:intergenic
TGATCTTCACACATTTCCCA+TGG 0.618512 7_1:+60560398 None:intergenic
TGATTCCAAGAGCTGGCTCA+GGG 0.623716 7_1:+60562190 None:intergenic
CGTAACCAACATGGAAGAGG+AGG 0.631846 7_1:-60560094 Msa1028020:three_prime_UTR
GGAAGTAACTCTGCCAGCAG+AGG 0.636663 7_1:-60562229 Msa1028020:CDS
GCCCTCAATGCAGCATCAGG+CGG 0.644933 7_1:-60560339 Msa1028020:CDS
GGTCACAATTTCGAAAACGG+TGG 0.656142 7_1:+60560737 None:intergenic
AAGCAACCCAAAGTTTCCTG+TGG 0.656897 7_1:-60560539 Msa1028020:CDS
TTGGTTGTGATATATGTGAG+AGG 0.665767 7_1:-60560426 Msa1028020:CDS
TGTGGATGACGGTTATGAGG+AGG 0.666323 7_1:-60560521 Msa1028020:CDS
ACAACCAATCCAAAACTCGT+CGG 0.669542 7_1:+60560441 None:intergenic
AGATCTCTTCAACGGTACGA+GGG 0.670323 7_1:+60562980 None:intergenic
TATTCGCAGAGATCCAGTGA+CGG 0.673421 7_1:-60560571 Msa1028020:intron
TAAGGACAACAAGCCAGCAG+CGG 0.678184 7_1:-60560700 Msa1028020:CDS
ATAGAATGTACCTTTCATTG+CGG 0.683230 7_1:+60562061 None:intergenic
GACAGTGGAAGCAAATCCCG+AGG 0.687670 7_1:-60560678 Msa1028020:CDS
ATATGTGAGAGGTGGTACCA+TGG 0.697894 7_1:-60560415 Msa1028020:CDS
AGATTGAATTGAAAGGACAG+AGG 0.707782 7_1:+60563066 None:intergenic
CAAATCCCGAGGAAGCACCA+AGG 0.723813 7_1:-60560667 Msa1028020:intron
GTTGTGATATATGTGAGAGG+TGG 0.732743 7_1:-60560423 Msa1028020:CDS
ATTGAATTGAAAGGACAGAG+GGG 0.734212 7_1:+60563068 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAAAAAAA+CGG - chr7_1:60561780-60561799 Msa1028020:intron 0.0%
!!! TTTATACTTTTTGTTTTTAT+TGG - chr7_1:60560530-60560549 Msa1028020:CDS 10.0%
!!! TTTTAAAGAATTTAATTAGA+GGG - chr7_1:60560642-60560661 Msa1028020:intron 10.0%
!!! TTTTTTTTTTTTGACTAAAA+GGG + chr7_1:60561772-60561791 None:intergenic 10.0%
!!! TTTTTTTTTTTTTGACTAAA+AGG + chr7_1:60561773-60561792 None:intergenic 10.0%
!! AACAAAAACAATTACAAAAA+AGG + chr7_1:60560374-60560393 None:intergenic 15.0%
!!! GTTTTAAAGAATTTAATTAG+AGG - chr7_1:60560641-60560660 Msa1028020:intron 15.0%
!!! ACATTTAATTTTAGTTTATG+TGG - chr7_1:60560667-60560686 Msa1028020:intron 15.0%
!!! AATGTAATGTATTTGTTTTA+AGG - chr7_1:60560804-60560823 Msa1028020:intron 15.0%
!!! ACATTAAATTTTAGTTTATC+TGG - chr7_1:60560844-60560863 Msa1028020:intron 15.0%
!!! AAATGTGAATTATTTTAGAT+TGG - chr7_1:60561436-60561455 Msa1028020:intron 15.0%
!!! ATTTTTACTAGTATTATCAA+TGG - chr7_1:60561501-60561520 Msa1028020:intron 15.0%
!!! ATATATCACTTTTCTTTAAT+CGG - chr7_1:60562248-60562267 Msa1028020:CDS 15.0%
!!! AATTATTTTAGATTGGTGAT+GGG - chr7_1:60561443-60561462 Msa1028020:intron 20.0%
!! ATACTAGTAAAAATTGAAGT+AGG + chr7_1:60561495-60561514 None:intergenic 20.0%
!! ATTAGTATTACACAATAGAT+TGG + chr7_1:60561895-60561914 None:intergenic 20.0%
!!! TTATTATGTTTTTCCTCTTA+AGG - chr7_1:60562274-60562293 Msa1028020:CDS 20.0%
!! GTTATGTTCAAATTCATTAA+TGG + chr7_1:60563153-60563172 None:intergenic 20.0%
! AGAAACTAGATTGAATTGAA+AGG + chr7_1:60560154-60560173 None:intergenic 25.0%
! TATCTATCAAAATTCTCATC+TGG - chr7_1:60560311-60560330 Msa1028020:exon 25.0%
! ATCTATCAAAATTCTCATCT+GGG - chr7_1:60560312-60560331 Msa1028020:exon 25.0%
!!! TCAGATGTTGATGAATTTTA+CGG - chr7_1:60560406-60560425 Msa1028020:CDS 25.0%
!! TATTATGTGTGAATTTTGCA+TGG - chr7_1:60560577-60560596 Msa1028020:intron 25.0%
!! ATTTATGAGTGAATTTTGCA+TGG - chr7_1:60560777-60560796 Msa1028020:intron 25.0%
!!! TATCTGGTTTTATGATTGTT+AGG - chr7_1:60560860-60560879 Msa1028020:intron 25.0%
!! GTTTTGTGTTTGTTTAGATA+AGG - chr7_1:60560921-60560940 Msa1028020:intron 25.0%
! ATAGTTTCTAACACTAAACA+AGG + chr7_1:60561248-60561267 None:intergenic 25.0%
! TTGTTTAGTGTTAGAAACTA+TGG - chr7_1:60561247-60561266 Msa1028020:intron 25.0%
! TAGAAACTATGGCTTATAAT+TGG - chr7_1:60561258-60561277 Msa1028020:intron 25.0%
!!! ATTTGTTAATTTTCCTGACT+TGG + chr7_1:60561414-60561433 None:intergenic 25.0%
!!! GAATTATTTTAGATTGGTGA+TGG - chr7_1:60561442-60561461 Msa1028020:intron 25.0%
! GAAATACCAAAATTATATGG+CGG + chr7_1:60561557-60561576 None:intergenic 25.0%
!!! GCCATATAATTTTGGTATTT+CGG - chr7_1:60561556-60561575 Msa1028020:intron 25.0%
! AACAATGCAACTCATTAAAT+TGG - chr7_1:60561952-60561971 Msa1028020:intron 25.0%
! AACTCATTAAATTGGTATAG+TGG - chr7_1:60561960-60561979 Msa1028020:intron 25.0%
!!! TGTTATTTTAAGTCTTGCTT+AGG + chr7_1:60562148-60562167 None:intergenic 25.0%
! ACAAGTATATCACTAGAAAA+GGG + chr7_1:60562579-60562598 None:intergenic 25.0%
! AACAAGTATATCACTAGAAA+AGG + chr7_1:60562580-60562599 None:intergenic 25.0%
!! TAGTGATATACTTGTTTCTT+TGG - chr7_1:60562584-60562603 Msa1028020:intron 25.0%
AATGAAGAACGTAGAGAAAA+GGG + chr7_1:60560082-60560101 None:intergenic 30.0%
AATTGAGATCTGAGAAAAAG+GGG + chr7_1:60560188-60560207 None:intergenic 30.0%
CAATTGAGATCTGAGAAAAA+GGG + chr7_1:60560189-60560208 None:intergenic 30.0%
! CTTTTTCTCAGATCTCAATT+GGG - chr7_1:60560188-60560207 Msa1028020:three_prime_UTR 30.0%
! ATCTTTGAAGATCTCTTCAA+CGG + chr7_1:60560241-60560260 None:intergenic 30.0%
!!! TCATCTGGGTCTTTTTTTTT+CGG - chr7_1:60560326-60560345 Msa1028020:exon 30.0%
! TGTTGTTGTTGAATTTGACT+AGG - chr7_1:60560604-60560623 Msa1028020:intron 30.0%
! GTTGTTGTTGAATTTGACTA+GGG - chr7_1:60560605-60560624 Msa1028020:intron 30.0%
GTGTTGTGTTTGTTTAGATA+AGG - chr7_1:60560740-60560759 Msa1028020:CDS 30.0%
!!! GTTTTAAGGAGTTTGATTAG+AGG - chr7_1:60560818-60560837 Msa1028020:intron 30.0%
! AAGGATAATTTGTGTCTCTA+TGG - chr7_1:60560940-60560959 Msa1028020:intron 30.0%
ATGGTCATAATAATGAAAGC+TGG - chr7_1:60560959-60560978 Msa1028020:intron 30.0%
TGGTCATAATAATGAAAGCT+GGG - chr7_1:60560960-60560979 Msa1028020:intron 30.0%
ATAGAATGTACCTTTCATTG+CGG + chr7_1:60561152-60561171 None:intergenic 30.0%
!! TCAATGACAATGACTGATTT+TGG - chr7_1:60561524-60561543 Msa1028020:intron 30.0%
GCCGAAATACCAAAATTATA+TGG + chr7_1:60561560-60561579 None:intergenic 30.0%
! CATTTTATGGTTGATTACAG+AGG + chr7_1:60561634-60561653 None:intergenic 30.0%
AACTTTCATGCTGCATAAAA+AGG + chr7_1:60561682-60561701 None:intergenic 30.0%
CAAATACAAGAACAGTGAAA+AGG + chr7_1:60561818-60561837 None:intergenic 30.0%
TTACACAATAGATTGGACAA+GGG + chr7_1:60561888-60561907 None:intergenic 30.0%
ATTACACAATAGATTGGACA+AGG + chr7_1:60561889-60561908 None:intergenic 30.0%
!! AGGTTTTATGATGTTGATTG+TGG + chr7_1:60562128-60562147 None:intergenic 30.0%
!! TATCACTTTTCTTTAATCGG+TGG - chr7_1:60562251-60562270 Msa1028020:CDS 30.0%
CAATGAATACACTCAATCTA+AGG + chr7_1:60562343-60562362 None:intergenic 30.0%
TAGATTGAGTGTATTCATTG+TGG - chr7_1:60562343-60562362 Msa1028020:intron 30.0%
!! CTTTTACGTTTGACTTTAGT+AGG - chr7_1:60563018-60563037 Msa1028020:exon 30.0%
! CATTGTTGTCATCAAGTTTT+TGG + chr7_1:60563175-60563194 None:intergenic 30.0%
! GTAGTGTGTGTTTGTTACTA+AGG + chr7_1:60560038-60560057 None:intergenic 35.0%
!! AAAGGGTGTGTTTTTGTACT+AGG + chr7_1:60560065-60560084 None:intergenic 35.0%
GAATGAAGAACGTAGAGAAA+AGG + chr7_1:60560083-60560102 None:intergenic 35.0%
ACCATGAGAATGGATCAAAA+GGG + chr7_1:60560118-60560137 None:intergenic 35.0%
AACCATGAGAATGGATCAAA+AGG + chr7_1:60560119-60560138 None:intergenic 35.0%
ATTGAATTGAAAGGACAGAG+GGG + chr7_1:60560145-60560164 None:intergenic 35.0%
GATTGAATTGAAAGGACAGA+GGG + chr7_1:60560146-60560165 None:intergenic 35.0%
AGATTGAATTGAAAGGACAG+AGG + chr7_1:60560147-60560166 None:intergenic 35.0%
CCAATTGAGATCTGAGAAAA+AGG + chr7_1:60560190-60560209 None:intergenic 35.0%
! CCTTTTTCTCAGATCTCAAT+TGG - chr7_1:60560187-60560206 Msa1028020:three_prime_UTR 35.0%
TCTCAATTGGGTTATGGAAA+TGG - chr7_1:60560200-60560219 Msa1028020:three_prime_UTR 35.0%
ATCCAGGTAAAGTGTATTAG+CGG - chr7_1:60560437-60560456 Msa1028020:CDS 35.0%
AGGTACATTCTATCTTGCTT+TGG - chr7_1:60561159-60561178 Msa1028020:intron 35.0%
TACATTCTATCTTGCTTTGG+TGG - chr7_1:60561162-60561181 Msa1028020:intron 35.0%
TTGGTGGAGATGTTTGTATA+TGG - chr7_1:60561178-60561197 Msa1028020:intron 35.0%
GTCGTAATTGAAGTTCTTTG+TGG - chr7_1:60561200-60561219 Msa1028020:intron 35.0%
TGGCTTATAATTGGAGTATG+TGG - chr7_1:60561267-60561286 Msa1028020:intron 35.0%
!! GTTTTGTTGATATGTGATGC+TGG - chr7_1:60561307-60561326 Msa1028020:intron 35.0%
! GACAATCCGCCATATAATTT+TGG - chr7_1:60561548-60561567 Msa1028020:intron 35.0%
! ACCATAAAATGTGATGACGT+AGG - chr7_1:60561643-60561662 Msa1028020:intron 35.0%
! TCCTACGTCATCACATTTTA+TGG + chr7_1:60561647-60561666 None:intergenic 35.0%
! TAAAATGTGATGACGTAGGA+AGG - chr7_1:60561647-60561666 Msa1028020:intron 35.0%
ATGAAAGTTGTGACTTTGGT+TGG - chr7_1:60561693-60561712 Msa1028020:intron 35.0%
TGAAAGTTGTGACTTTGGTT+GGG - chr7_1:60561694-60561713 Msa1028020:intron 35.0%
CATAGAATGTGACAACTTCT+TGG + chr7_1:60561721-60561740 None:intergenic 35.0%
GTATCCTCAATCTTAATCCA+TGG - chr7_1:60561860-60561879 Msa1028020:intron 35.0%
TATGACAACGACTCTGTTAT+AGG - chr7_1:60562007-60562026 Msa1028020:intron 35.0%
CACATTTGAGTGTGAATGTT+TGG + chr7_1:60562046-60562065 None:intergenic 35.0%
ATTTCACACTTTAGCAACTG+AGG + chr7_1:60562071-60562090 None:intergenic 35.0%
ATTGAAGAGAAAGCCTTAAG+AGG + chr7_1:60562290-60562309 None:intergenic 35.0%
CAGATGGTTCCTTATATTGA+TGG - chr7_1:60562396-60562415 Msa1028020:intron 35.0%
TCAGGGAAACCATCAATATA+AGG + chr7_1:60562408-60562427 None:intergenic 35.0%
ATGGTTTCCCTGATTCTTTA+TGG - chr7_1:60562415-60562434 Msa1028020:intron 35.0%
TTTCCTGCCATAAAGAATCA+GGG + chr7_1:60562425-60562444 None:intergenic 35.0%
AAAAGGGAAAACACTAACCT+TGG + chr7_1:60562563-60562582 None:intergenic 35.0%
!!! TTTGGTTCTTTTGACTCGTT+AGG - chr7_1:60562602-60562621 Msa1028020:intron 35.0%
TTGGTTGTGATATATGTGAG+AGG - chr7_1:60562784-60562803 Msa1028020:intron 35.0%
CTTGTATTGCTTTATGCTCT+CGG + chr7_1:60562850-60562869 None:intergenic 35.0%
TCCAAATTGCCTTGAAACTA+GGG + chr7_1:60562903-60562922 None:intergenic 35.0%
TTCCAAATTGCCTTGAAACT+AGG + chr7_1:60562904-60562923 None:intergenic 35.0%
CAGAAGTGATTGATGTTTCA+TGG - chr7_1:60562938-60562957 Msa1028020:CDS 35.0%
TTGATGTTTCATGGCTGAAA+AGG - chr7_1:60562947-60562966 Msa1028020:CDS 35.0%
! ACCCTTTTGATCCATTCTCA+TGG - chr7_1:60560114-60560133 Msa1028020:three_prime_UTR 40.0%
GAGAAAAAGGGGTTTGGATT+TGG + chr7_1:60560177-60560196 None:intergenic 40.0%
AGATCTGAGAAAAAGGGGTT+TGG + chr7_1:60560183-60560202 None:intergenic 40.0%
CTCAGATCTCAATTGGGTTA+TGG - chr7_1:60560194-60560213 Msa1028020:three_prime_UTR 40.0%
!! GATAAGAGTACCTTGAGTGA+GGG + chr7_1:60560295-60560314 None:intergenic 40.0%
!! AGATAAGAGTACCTTGAGTG+AGG + chr7_1:60560296-60560315 None:intergenic 40.0%
ATCCGCTAATACACTTTACC+TGG + chr7_1:60560442-60560461 None:intergenic 40.0%
! GCAAAATTGATTCCAAGAGC+TGG + chr7_1:60561030-60561049 None:intergenic 40.0%
! GGAATCAATTTTGCTCGAGA+CGG - chr7_1:60561036-60561055 Msa1028020:intron 40.0%
CAAGAGAAAGCCAATCTCTA+CGG + chr7_1:60561068-60561087 None:intergenic 40.0%
! TGATTCATGGTTGCTTTCTG+TGG - chr7_1:60561101-60561120 Msa1028020:intron 40.0%
GTTGATATGTGATGCTGGAT+TGG - chr7_1:60561312-60561331 Msa1028020:intron 40.0%
! GGATTGGTACATACATGCAT+TGG - chr7_1:60561328-60561347 Msa1028020:intron 40.0%
GCTAATGTTGCTCGTAACAT+AGG + chr7_1:60561385-60561404 None:intergenic 40.0%
!! AATTTTGGTATTTCGGCCGA+TGG - chr7_1:60561563-60561582 Msa1028020:intron 40.0%
AGGCAGATAAAGTAAGCCAT+CGG + chr7_1:60561582-60561601 None:intergenic 40.0%
ATGGCTTACTTTATCTGCCT+TGG - chr7_1:60561582-60561601 Msa1028020:intron 40.0%
CAGCATGAAAGTTGTGACTT+TGG - chr7_1:60561689-60561708 Msa1028020:intron 40.0%
GAAAGTTGTGACTTTGGTTG+GGG - chr7_1:60561695-60561714 Msa1028020:intron 40.0%
GGATACTTGAGACTAAGAGA+AGG + chr7_1:60561846-60561865 None:intergenic 40.0%
ATTCTCAGAGTCGATGGATA+AGG + chr7_1:60561927-60561946 None:intergenic 40.0%
!! TTATCCATCGACTCTGAGAA+TGG - chr7_1:60561926-60561945 Msa1028020:intron 40.0%
TTTCCCTGATTCTTTATGGC+AGG - chr7_1:60562419-60562438 Msa1028020:intron 40.0%
GTTTCCTGCCATAAAGAATC+AGG + chr7_1:60562426-60562445 None:intergenic 40.0%
GTCACAATTTCGAAAACGGT+GGG + chr7_1:60562475-60562494 None:intergenic 40.0%
GTCGGTCACAATTTCGAAAA+CGG + chr7_1:60562479-60562498 None:intergenic 40.0%
! TTTTCGAAATTGTGACCGAC+AGG - chr7_1:60562479-60562498 Msa1028020:intron 40.0%
! GTCCTTAATTGGTTTCCTGT+CGG + chr7_1:60562497-60562516 None:intergenic 40.0%
! ATTACAATGCCGACGAGTTT+TGG - chr7_1:60562760-60562779 Msa1028020:intron 40.0%
ACAACCAATCCAAAACTCGT+CGG + chr7_1:60562772-60562791 None:intergenic 40.0%
GTTGTGATATATGTGAGAGG+TGG - chr7_1:60562787-60562806 Msa1028020:intron 40.0%
TGATCTTCACACATTTCCCA+TGG + chr7_1:60562815-60562834 None:intergenic 40.0%
ACCCTAGTTTCAAGGCAATT+TGG - chr7_1:60562899-60562918 Msa1028020:intron 40.0%
! CCATGTTGGTTACGGAAAAA+TGG + chr7_1:60563110-60563129 None:intergenic 40.0%
!! CCATTTTTCCGTAACCAACA+TGG - chr7_1:60563107-60563126 Msa1028020:five_prime_UTR 40.0%
AGATCTCTTCAACGGTACGA+GGG + chr7_1:60560233-60560252 None:intergenic 45.0%
AAGATCTCTTCAACGGTACG+AGG + chr7_1:60560234-60560253 None:intergenic 45.0%
! TTTTACGGTCTCTGTGATCC+AGG - chr7_1:60560421-60560440 Msa1028020:CDS 45.0%
ACGGTATGAACCGTAGAGAT+TGG - chr7_1:60561055-60561074 Msa1028020:intron 45.0%
TTGCTGTGCACAGTGATTCA+TGG - chr7_1:60561088-60561107 Msa1028020:intron 45.0%
CTTTCTGTGGCGTTCTATCT+TGG - chr7_1:60561114-60561133 Msa1028020:intron 45.0%
CTCGTCTTAACCGCAATGAA+AGG - chr7_1:60561139-60561158 Msa1028020:intron 45.0%
GTTACGAGCAACATTAGCTG+AGG - chr7_1:60561387-60561406 Msa1028020:intron 45.0%
GTGTTGTCAAATTGCTGCCA+AGG + chr7_1:60561602-60561621 None:intergenic 45.0%
! GGAGCCATGGATTAAGATTG+AGG + chr7_1:60561867-60561886 None:intergenic 45.0%
ATCTGCTGCAACTTCACAGA+TGG - chr7_1:60562380-60562399 Msa1028020:intron 45.0%
GGTCACAATTTCGAAAACGG+TGG + chr7_1:60562476-60562495 None:intergenic 45.0%
GACCGACAGGAAACCAATTA+AGG - chr7_1:60562492-60562511 Msa1028020:intron 45.0%
!! GCTGGCTTGTTGTCCTTAAT+TGG + chr7_1:60562508-60562527 None:intergenic 45.0%
CACTGGATCTCTGCGAATAA+AGG + chr7_1:60562638-60562657 None:intergenic 45.0%
TATTCGCAGAGATCCAGTGA+CGG - chr7_1:60562639-60562658 Msa1028020:intron 45.0%
AAGCAACCCAAAGTTTCCTG+TGG - chr7_1:60562671-60562690 Msa1028020:intron 45.0%
CGTCATCCACAGGAAACTTT+GGG + chr7_1:60562680-60562699 None:intergenic 45.0%
CCAAAGTTTCCTGTGGATGA+CGG - chr7_1:60562678-60562697 Msa1028020:intron 45.0%
GAGCACAGTGAAACACTTTG+CGG - chr7_1:60562723-60562742 Msa1028020:intron 45.0%
AGCACAGTGAAACACTTTGC+GGG - chr7_1:60562724-60562743 Msa1028020:intron 45.0%
!!! AATGCCGACGAGTTTTGGAT+TGG - chr7_1:60562765-60562784 Msa1028020:intron 45.0%
ATATGTGAGAGGTGGTACCA+TGG - chr7_1:60562795-60562814 Msa1028020:CDS 45.0%
TATGTGAGAGGTGGTACCAT+GGG - chr7_1:60562796-60562815 Msa1028020:CDS 45.0%
TTCCGTAACCAACATGGAAG+AGG - chr7_1:60563113-60563132 Msa1028020:five_prime_UTR 45.0%
! CTCCTCTTCCATGTTGGTTA+CGG + chr7_1:60563118-60563137 None:intergenic 45.0%
!! AAAAAAAAAAAAAAAAAAAC+GGG - chr7_1:60561788-60561807 Msa1028020:intron 5.0%
GAGGGGTGAAACCATGAGAA+TGG + chr7_1:60560128-60560147 None:intergenic 50.0%
! TTGAGTGAGGGCACGAACAA+CGG + chr7_1:60560283-60560302 None:intergenic 50.0%
! TGATTCCAAGAGCTGGCTCA+GGG + chr7_1:60561023-60561042 None:intergenic 50.0%
! TTGATTCCAAGAGCTGGCTC+AGG + chr7_1:60561024-60561043 None:intergenic 50.0%
CATTAGCTGAGGTCCAAGTC+AGG - chr7_1:60561398-60561417 Msa1028020:intron 50.0%
TAGATTGGACAAGGGAGCCA+TGG + chr7_1:60561880-60561899 None:intergenic 50.0%
GAGTCGATGGATAAGGTCAG+TGG + chr7_1:60561920-60561939 None:intergenic 50.0%
TGCTCCATTCTCAGAGTCGA+TGG + chr7_1:60561933-60561952 None:intergenic 50.0%
GTTGTCATACCAGCAGACAG+CGG + chr7_1:60561996-60562015 None:intergenic 50.0%
GTGTGAATGTTTGGCAGTGC+AGG + chr7_1:60562037-60562056 None:intergenic 50.0%
TAAGGACAACAAGCCAGCAG+CGG - chr7_1:60562510-60562529 Msa1028020:intron 50.0%
!! ACTAACCTTGGTGCTTCCTC+GGG + chr7_1:60562551-60562570 None:intergenic 50.0%
!! CACTAACCTTGGTGCTTCCT+CGG + chr7_1:60562552-60562571 None:intergenic 50.0%
ATTCGCAGAGATCCAGTGAC+GGG - chr7_1:60562640-60562659 Msa1028020:intron 50.0%
CCGTCATCCACAGGAAACTT+TGG + chr7_1:60562681-60562700 None:intergenic 50.0%
! TCCTGTGGATGACGGTTATG+AGG - chr7_1:60562686-60562705 Msa1028020:intron 50.0%
TCCTCATAACCGTCATCCAC+AGG + chr7_1:60562690-60562709 None:intergenic 50.0%
! TGTGGATGACGGTTATGAGG+AGG - chr7_1:60562689-60562708 Msa1028020:intron 50.0%
TGTGAAGATCACTCCTGCCA+AGG - chr7_1:60562824-60562843 Msa1028020:intron 50.0%
TTGCTTTATGCTCTCGGCCT+TGG + chr7_1:60562844-60562863 None:intergenic 50.0%
CGGAACAGACCCTAGTTTCA+AGG - chr7_1:60562891-60562910 Msa1028020:intron 50.0%
CGTAACCAACATGGAAGAGG+AGG - chr7_1:60563116-60563135 Msa1028020:five_prime_UTR 50.0%
CTATGCCTCCTCTTCCATGT+TGG + chr7_1:60563124-60563143 None:intergenic 50.0%
GTTGTTCGTGCCCTCACTCA+AGG - chr7_1:60560282-60560301 Msa1028020:three_prime_UTR 55.0%
GGAAGTAACTCTGCCAGCAG+AGG - chr7_1:60560981-60561000 Msa1028020:intron 55.0%
TTGTAGTCACCGCTGTCTGC+TGG - chr7_1:60561984-60562003 Msa1028020:intron 55.0%
GACAGTGGAAGCAAATCCCG+AGG - chr7_1:60562532-60562551 Msa1028020:intron 55.0%
!! CAAATCCCGAGGAAGCACCA+AGG - chr7_1:60562543-60562562 Msa1028020:intron 55.0%
!!! GCTTTTGACTTGCCCGTCAC+TGG + chr7_1:60562655-60562674 None:intergenic 55.0%
! GGATGACGGTTATGAGGAGG+AGG - chr7_1:60562692-60562711 Msa1028020:intron 55.0%
TGACGGTTATGAGGAGGAGG+AGG - chr7_1:60562695-60562714 Msa1028020:intron 55.0%
GAAACACTTTGCGGGAGCTG+TGG - chr7_1:60562732-60562751 Msa1028020:intron 55.0%
TTTATGCTCTCGGCCTTGGC+AGG + chr7_1:60562840-60562859 None:intergenic 55.0%
AGTGCCCTCAATGCAGCATC+AGG - chr7_1:60562868-60562887 Msa1028020:intron 55.0%
TCCGCCTGATGCTGCATTGA+GGG + chr7_1:60562875-60562894 None:intergenic 55.0%
TTCCGCCTGATGCTGCATTG+AGG + chr7_1:60562876-60562895 None:intergenic 55.0%
GCCAGCAGAGGAAGTTCCAC+CGG - chr7_1:60560993-60561012 Msa1028020:intron 60.0%
TCCGGTGGAACTTCCTCTGC+TGG + chr7_1:60560997-60561016 None:intergenic 60.0%
! AGAGCTGGCTCAGGGAGTTC+CGG + chr7_1:60561015-60561034 None:intergenic 60.0%
GAACTCCCTGAGCCAGCTCT+TGG - chr7_1:60561015-60561034 Msa1028020:intron 60.0%
AACAAGCCAGCAGCGGACAG+TGG - chr7_1:60562517-60562536 Msa1028020:intron 60.0%
TTGCTTCCACTGTCCGCTGC+TGG + chr7_1:60562526-60562545 None:intergenic 60.0%
ACACTTTGCGGGAGCTGTGG+CGG - chr7_1:60562735-60562754 Msa1028020:intron 60.0%
GCCCTCAATGCAGCATCAGG+CGG - chr7_1:60562871-60562890 Msa1028020:intron 60.0%
! GCTGGCTCAGGGAGTTCCGG+TGG + chr7_1:60561012-60561031 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 60560024 60563208 60560024 ID=Msa1028020;Name=Msa1028020
chr7_1 mRNA 60560024 60563208 60560024 ID=Msa1028020-mRNA-1;Parent=Msa1028020;Name=Msa1028020-mRNA-1;_AED=0.05;_eAED=0.05;_QI=189|1|1|1|1|1|5|303|242
chr7_1 exon 60560024 60560584 60560024 ID=Msa1028020-mRNA-1:exon:12602;Parent=Msa1028020-mRNA-1
chr7_1 exon 60560668 60560791 60560668 ID=Msa1028020-mRNA-1:exon:12601;Parent=Msa1028020-mRNA-1
chr7_1 exon 60562072 60562294 60562072 ID=Msa1028020-mRNA-1:exon:12600;Parent=Msa1028020-mRNA-1
chr7_1 exon 60562790 60562822 60562790 ID=Msa1028020-mRNA-1:exon:12599;Parent=Msa1028020-mRNA-1
chr7_1 exon 60562929 60563208 60562929 ID=Msa1028020-mRNA-1:exon:12598;Parent=Msa1028020-mRNA-1
chr7_1 five_prime_UTR 60563020 60563208 60563020 ID=Msa1028020-mRNA-1:five_prime_utr;Parent=Msa1028020-mRNA-1
chr7_1 CDS 60562929 60563019 60562929 ID=Msa1028020-mRNA-1:cds;Parent=Msa1028020-mRNA-1
chr7_1 CDS 60562790 60562822 60562790 ID=Msa1028020-mRNA-1:cds;Parent=Msa1028020-mRNA-1
chr7_1 CDS 60562072 60562294 60562072 ID=Msa1028020-mRNA-1:cds;Parent=Msa1028020-mRNA-1
chr7_1 CDS 60560668 60560791 60560668 ID=Msa1028020-mRNA-1:cds;Parent=Msa1028020-mRNA-1
chr7_1 CDS 60560327 60560584 60560327 ID=Msa1028020-mRNA-1:cds;Parent=Msa1028020-mRNA-1
chr7_1 three_prime_UTR 60560024 60560326 60560024 ID=Msa1028020-mRNA-1:three_prime_utr;Parent=Msa1028020-mRNA-1
Gene Sequence

>Msa1028020

ATGGAAATGGCTTCTAGCCCTCGTACCGTTGAAGAGATCTTCAAAGATTACAGCGCTCGTAGAATCGCCGTTGTTCGTGCCCTCACTCAAGATGTTGATGAATTTTACGGTCTCTGTGATCCAGATAAGGATAATTTGTGTCTCTATGGTCATAATAATGAAAGCTGGGAAGTAACTCTGCCAGCAGAGGAAGTTCCACCGGAACTCCCTGAGCCAGCTCTTGGAATCAATTTTGCTCGAGACGGTATGAACCGTAGAGATTGGCTTTCTCTTGTTGCTGTGCACAGTGATTCATGGTTGCTTTCTGTGGCGTTCTATCTTGGAGCTCGTCTTAACCGCAATGAAAGGAAACGTTTGTTTAGTTTGATCAACGAACTTCCCACCGTTTTCGAAATTGTGACCGACAGGAAACCAATTAAGGACAACAAGCCAGCAGCGGACAGTGGAAGCAAATCCCGAGGAAGCACCAAGAGATCCAGTGACGGGCAAGTCAAAAGCAACCCAAAGTTTCCTGTGGATGACGGTTATGAGGAGGAGGAGGAAGACGAGCACAGTGAAACACTTTGCGGGAGCTGTGGCGGTAATTACAATGCCGACGAGTTTTGGATTGGTTGTGATATATGTGAGAGGTGGTACCATGGGAAATGTGTGAAGATCACTCCTGCCAAGGCCGAGAGCATAAAGCAATACAAGTGCCCTCAATGCAGCATCAGGCGGAACAGACCCTAG

Protein sequence

>Msa1028020

MEMASSPRTVEEIFKDYSARRIAVVRALTQDVDEFYGLCDPDKDNLCLYGHNNESWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINELPTVFEIVTDRKPIKDNKPAADSGSKSRGSTKRSSDGQVKSNPKFPVDDGYEEEEEDEHSETLCGSCGGNYNADEFWIGCDICERWYHGKCVKITPAKAESIKQYKCPQCSIRRNRP*