Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1108640 | XP_013449145.1 | 100.000 | 242 | 0 | 0 | 1 | 242 | 1 | 242 | 4.30e-180 | 503 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1108640 | sp|Q8H383|ALFL2_ORYSJ | 75.000 | 240 | 53 | 2 | 1 | 236 | 1 | 237 | 1.84e-119 | 343 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1108640 | A0A072U0H4 | 100.000 | 242 | 0 | 0 | 1 | 242 | 1 | 242 | 2.06e-180 | 503 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1108640 | TF | Alfin-like |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1028020 | Msa1108640 | 0.819030 | 1.438520e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1108640 | MtrunA17_Chr7g0242511 | 100.000 | 242 | 0 | 0 | 1 | 242 | 1 | 242 | 0.0 | 503 |
| Msa1108640 | MtrunA17_Chr4g0006381 | 90.984 | 244 | 18 | 3 | 1 | 242 | 1 | 242 | 1.83e-144 | 403 |
| Msa1108640 | MtrunA17_Chr4g0076771 | 61.355 | 251 | 87 | 4 | 1 | 241 | 4 | 254 | 1.03e-91 | 270 |
| Msa1108640 | MtrunA17_Chr8g0343441 | 57.831 | 249 | 93 | 5 | 6 | 242 | 8 | 256 | 4.10e-88 | 261 |
| Msa1108640 | MtrunA17_Chr1g0150821 | 59.459 | 259 | 79 | 5 | 6 | 242 | 9 | 263 | 7.55e-85 | 253 |
| Msa1108640 | MtrunA17_Chr2g0300241 | 56.538 | 260 | 88 | 6 | 1 | 242 | 1 | 253 | 9.71e-85 | 253 |
| Msa1108640 | MtrunA17_Chr2g0329821 | 56.557 | 244 | 96 | 4 | 3 | 236 | 1 | 244 | 5.81e-82 | 245 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1108640 | AT5G05610.2 | 73.950 | 238 | 60 | 1 | 4 | 241 | 5 | 240 | 1.34e-116 | 333 |
| Msa1108640 | AT5G05610.1 | 73.950 | 238 | 60 | 1 | 4 | 241 | 5 | 240 | 1.34e-116 | 333 |
| Msa1108640 | AT3G11200.1 | 77.083 | 240 | 54 | 1 | 3 | 241 | 6 | 245 | 3.41e-115 | 330 |
| Msa1108640 | AT3G11200.2 | 75.481 | 208 | 50 | 1 | 35 | 241 | 25 | 232 | 1.83e-97 | 284 |
| Msa1108640 | AT3G42790.1 | 62.397 | 242 | 84 | 5 | 6 | 241 | 9 | 249 | 7.96e-93 | 273 |
| Msa1108640 | AT5G20510.1 | 59.127 | 252 | 88 | 4 | 6 | 242 | 9 | 260 | 7.77e-88 | 261 |
| Msa1108640 | AT2G02470.1 | 60.484 | 248 | 86 | 4 | 7 | 242 | 9 | 256 | 8.39e-88 | 261 |
| Msa1108640 | AT2G02470.2 | 59.336 | 241 | 91 | 3 | 7 | 242 | 9 | 247 | 2.22e-85 | 254 |
| Msa1108640 | AT1G14510.1 | 58.333 | 240 | 93 | 4 | 7 | 239 | 9 | 248 | 1.35e-82 | 247 |
| Msa1108640 | AT5G26210.1 | 57.430 | 249 | 95 | 4 | 4 | 241 | 6 | 254 | 3.03e-77 | 234 |
| Msa1108640 | AT5G20510.2 | 59.722 | 216 | 72 | 4 | 42 | 242 | 4 | 219 | 4.36e-69 | 212 |
| Msa1108640 | AT5G20510.3 | 61.875 | 160 | 56 | 3 | 6 | 160 | 9 | 168 | 1.73e-55 | 176 |
| Msa1108640 | AT2G02470.3 | 62.179 | 156 | 57 | 1 | 7 | 160 | 9 | 164 | 5.76e-55 | 177 |
Find 85 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTAGTTTCAAAGGCAATT+TGG | 0.202875 | 7_3:-51628570 | Msa1108640:exon |
| TCAATTGAGATCTGAGAAAA+AGG | 0.207937 | 7_3:+51631219 | None:intergenic |
| GCTGGCTTGTTGTCCTTAAT+TGG | 0.215056 | 7_3:+51628965 | None:intergenic |
| ATTACAATGCCGACGAGTTT+TGG | 0.256361 | 7_3:-51628710 | Msa1108640:CDS |
| CTTTCTGTGGCGTTCTATCT+TGG | 0.287893 | 7_3:-51630345 | Msa1108640:CDS |
| TTGCTGTGCACAGTGATTCA+TGG | 0.330962 | 7_3:-51630371 | Msa1108640:CDS |
| CTCAGATCTCAATTGAGTTA+TGG | 0.350578 | 7_3:-51631212 | Msa1108640:exon |
| AAGGATAATTTGTGTCTCTA+TGG | 0.357930 | 7_3:-51630519 | Msa1108640:CDS |
| CTTGTATTGCTTTATGCTCT+CGG | 0.362549 | 7_3:+51628623 | None:intergenic |
| TCCAAATTGCCTTTGAAACT+AGG | 0.374348 | 7_3:+51628569 | None:intergenic |
| GACCGACAGGAAACCAATTA+AGG | 0.374595 | 7_3:-51628978 | Msa1108640:CDS |
| TTGCTTCCACTGTCCGCTGC+TGG | 0.382118 | 7_3:+51628947 | None:intergenic |
| CCGTCATCCACAGGAAACTT+TGG | 0.383878 | 7_3:+51628792 | None:intergenic |
| CAGAAGTGATTGATGTTTCA+TGG | 0.385906 | 7_3:-51628531 | Msa1108640:three_prime_UTR |
| AGAGCTGGCTCAGGGAGTTC+CGG | 0.393745 | 7_3:+51630447 | None:intergenic |
| CACTAACCTTGGTGCTTCCT+CGG | 0.397306 | 7_3:+51628921 | None:intergenic |
| TTGCTTTATGCTCTCGGCCT+TGG | 0.413678 | 7_3:+51628629 | None:intergenic |
| AACCATGAGAATGGATCAAA+AGG | 0.429418 | 7_3:+51631290 | None:intergenic |
| CGTCATCCACAGGAAACTTT+GGG | 0.432337 | 7_3:+51628793 | None:intergenic |
| GAACTCCCTGAGCCAGCTCT+TGG | 0.435136 | 7_3:-51630444 | Msa1108640:CDS |
| TCCTGTGGATGACGGTTATG+AGG | 0.442634 | 7_3:-51628784 | Msa1108640:CDS |
| AGCACAGTGAAACACTTTGC+GGG | 0.443628 | 7_3:-51628746 | Msa1108640:CDS |
| CCAAATTGCCTTTGAAACTA+GGG | 0.444331 | 7_3:+51628570 | None:intergenic |
| TCCGCCTGATGCTGCATTGA+GGG | 0.446153 | 7_3:+51628598 | None:intergenic |
| TTTATGCTCTCGGCCTTGGC+AGG | 0.451134 | 7_3:+51628633 | None:intergenic |
| TCCGGTGGAACTTCCTCTGC+TGG | 0.464747 | 7_3:+51630465 | None:intergenic |
| AGTGCCCTCAATGCAGCATC+AGG | 0.465718 | 7_3:-51628602 | Msa1108640:CDS |
| GTAGTGTGTGTTTGTTACTA+AGG | 0.465827 | 7_3:+51631373 | None:intergenic |
| TCTCAATTGAGTTATGGAAA+TGG | 0.468246 | 7_3:-51631206 | Msa1108640:exon |
| ACTAACCTTGGTGCTTCCTC+GGG | 0.472237 | 7_3:+51628922 | None:intergenic |
| TTGATTCCAAGAGCTGGCTC+AGG | 0.473652 | 7_3:+51630438 | None:intergenic |
| ATGGTCATAATAATGAAAGC+TGG | 0.475692 | 7_3:-51630500 | Msa1108640:CDS |
| ACGGTATGAACCGTAGAGAT+TGG | 0.485613 | 7_3:-51630404 | Msa1108640:CDS |
| GTCGGTCACAATTTCGAAAA+CGG | 0.493814 | 7_3:+51628994 | None:intergenic |
| GTCCTTAATTGGTTTCCTGT+CGG | 0.494680 | 7_3:+51628976 | None:intergenic |
| GAGGGGTGAAACCATGAGAA+TGG | 0.506074 | 7_3:+51631281 | None:intergenic |
| TTCCGCCTGATGCTGCATTG+AGG | 0.510891 | 7_3:+51628597 | None:intergenic |
| TGACGGTTATGAGGAGGAGG+AGG | 0.514089 | 7_3:-51628775 | Msa1108640:CDS |
| AGATTGAATTGAAAGGATAG+AGG | 0.515142 | 7_3:+51631262 | None:intergenic |
| GCAAAATTGATTCCAAGAGC+TGG | 0.521530 | 7_3:+51630432 | None:intergenic |
| ACCATGAGAATGGATCAAAA+GGG | 0.527655 | 7_3:+51631291 | None:intergenic |
| AGAAACTAGATTGAATTGAA+AGG | 0.530075 | 7_3:+51631255 | None:intergenic |
| TCCTCATAACCGTCATCCAC+AGG | 0.530396 | 7_3:+51628783 | None:intergenic |
| GATTGAATTGAAAGGATAGA+GGG | 0.539600 | 7_3:+51631263 | None:intergenic |
| TGGTCATAATAATGAAAGCT+GGG | 0.544113 | 7_3:-51630499 | Msa1108640:CDS |
| GTTGTTCGTGCTCTCACTCA+AGG | 0.552840 | 7_3:-51631124 | Msa1108640:intron |
| CAAGAGAAAGCCAATCTCTA+CGG | 0.553772 | 7_3:+51630394 | None:intergenic |
| ATTCGCAGAGATCCAGTGAC+GGG | 0.560137 | 7_3:-51628830 | Msa1108640:intron |
| GCCAGCAGAGGAAGTTCCAC+CGG | 0.563034 | 7_3:-51630466 | Msa1108640:CDS |
| AAGATCTCTTCAACGGTACG+AGG | 0.564667 | 7_3:+51631175 | None:intergenic |
| TTGATGTTTCATGGCTGAAA+AGG | 0.565075 | 7_3:-51628522 | Msa1108640:three_prime_UTR |
| GAAACACTTTGCGGGAGCTG+TGG | 0.565640 | 7_3:-51628738 | Msa1108640:CDS |
| TGATTCATGGTTGCTTTCTG+TGG | 0.570084 | 7_3:-51630358 | Msa1108640:CDS |
| ACACTTTGCGGGAGCTGTGG+CGG | 0.573976 | 7_3:-51628735 | Msa1108640:CDS |
| ATCTTTGAAGATCTCTTCAA+CGG | 0.581501 | 7_3:+51631168 | None:intergenic |
| CCAAAGTTTCCTGTGGATGA+CGG | 0.582757 | 7_3:-51628792 | Msa1108640:CDS |
| GAGCACAGTGAAACACTTTG+CGG | 0.584136 | 7_3:-51628747 | Msa1108640:CDS |
| GGATGACGGTTATGAGGAGG+AGG | 0.591224 | 7_3:-51628778 | Msa1108640:CDS |
| CTCGTCTTAACCGCAATGAA+AGG | 0.595014 | 7_3:-51630320 | Msa1108640:intron |
| TATGTGAGAGGTGGTACCAT+GGG | 0.596316 | 7_3:-51628674 | Msa1108640:CDS |
| GGAACAGACCCTAGTTTCAA+AGG | 0.597479 | 7_3:-51628578 | Msa1108640:exon |
| GTCACAATTTCGAAAACGGT+GGG | 0.600381 | 7_3:+51628998 | None:intergenic |
| TGTGAAGATCACTCCTGCCA+AGG | 0.609845 | 7_3:-51628646 | Msa1108640:CDS |
| AACAAGCCAGCAGCGGACAG+TGG | 0.616447 | 7_3:-51628953 | Msa1108640:CDS |
| GCTGGCTCAGGGAGTTCCGG+TGG | 0.616538 | 7_3:+51630450 | None:intergenic |
| TGATCTTCACACATTTCCCA+TGG | 0.618512 | 7_3:+51628658 | None:intergenic |
| TGATTCCAAGAGCTGGCTCA+GGG | 0.623716 | 7_3:+51630439 | None:intergenic |
| ATTGAATTGAAAGGATAGAG+GGG | 0.632728 | 7_3:+51631264 | None:intergenic |
| CCATGAGAATGGATCAAAAG+GGG | 0.635427 | 7_3:+51631292 | None:intergenic |
| GGAAGTAACTCTGCCAGCAG+AGG | 0.636663 | 7_3:-51630478 | Msa1108640:CDS |
| GCCCTCAATGCAGCATCAGG+CGG | 0.644933 | 7_3:-51628599 | Msa1108640:CDS |
| TTGAGTGAGAGCACGAACAA+CGG | 0.655872 | 7_3:+51631126 | None:intergenic |
| GGTCACAATTTCGAAAACGG+TGG | 0.656142 | 7_3:+51628997 | None:intergenic |
| AAGCAACCCAAAGTTTCCTG+TGG | 0.656897 | 7_3:-51628799 | Msa1108640:CDS |
| TTGGTTGTGATATATGTGAG+AGG | 0.665767 | 7_3:-51628686 | Msa1108640:CDS |
| TGTGGATGACGGTTATGAGG+AGG | 0.666323 | 7_3:-51628781 | Msa1108640:CDS |
| ACAACCAATCCAAAACTCGT+CGG | 0.669542 | 7_3:+51628701 | None:intergenic |
| AGATCTCTTCAACGGTACGA+GGG | 0.670323 | 7_3:+51631176 | None:intergenic |
| TATTCGCAGAGATCCAGTGA+CGG | 0.673421 | 7_3:-51628831 | Msa1108640:intron |
| TAAGGACAACAAGCCAGCAG+CGG | 0.678184 | 7_3:-51628960 | Msa1108640:CDS |
| ATAGAATGTACCTTTCATTG+CGG | 0.683230 | 7_3:+51630310 | None:intergenic |
| GACAGTGGAAGCAAATCCCG+AGG | 0.687670 | 7_3:-51628938 | Msa1108640:CDS |
| ATATGTGAGAGGTGGTACCA+TGG | 0.697894 | 7_3:-51628675 | Msa1108640:CDS |
| CAAATCCCGAGGAAGCACCA+AGG | 0.723813 | 7_3:-51628927 | Msa1108640:intron |
| GTTGTGATATATGTGAGAGG+TGG | 0.732743 | 7_3:-51628683 | Msa1108640:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAAAAAAA+CGG | - | chr7_3:51630104-51630123 | Msa1108640:intron | 0.0% |
| !!! | TTTATACTTTTTGTTTTTAT+TGG | - | chr7_3:51628906-51628925 | Msa1108640:intron | 10.0% |
| !!! | TTTTTTTTTTTTGACTAAAA+GGG | + | chr7_3:51630096-51630115 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTTGACTAAA+AGG | + | chr7_3:51630097-51630116 | None:intergenic | 10.0% |
| !! | AACAAAAACAATTACAAAAA+AGG | + | chr7_3:51628750-51628769 | None:intergenic | 15.0% |
| !!! | TTTTAAAGAATTTGATTAGA+GGG | - | chr7_3:51629018-51629037 | Msa1108640:CDS | 15.0% |
| !!! | ACATTTAATTTTAGTTTATG+TGG | - | chr7_3:51629043-51629062 | Msa1108640:intron | 15.0% |
| !!! | AAATGTGAATTATTTTAGAT+TGG | - | chr7_3:51629759-51629778 | Msa1108640:intron | 15.0% |
| !!! | ATTTTTACTAGTATTATCAA+TGG | - | chr7_3:51629824-51629843 | Msa1108640:intron | 15.0% |
| !!! | ATATATCACTTTTCTTTAAT+CGG | - | chr7_3:51630560-51630579 | Msa1108640:intron | 15.0% |
| !!! | GTTTTAAAGAATTTGATTAG+AGG | - | chr7_3:51629017-51629036 | Msa1108640:CDS | 20.0% |
| !! | GTAATGTATTTATGATTGTT+AGG | - | chr7_3:51629183-51629202 | Msa1108640:intron | 20.0% |
| !!! | AATTATTTTAGATTGGTGAT+GGG | - | chr7_3:51629766-51629785 | Msa1108640:intron | 20.0% |
| !! | ATACTAGTAAAAATTGAAGT+AGG | + | chr7_3:51629818-51629837 | None:intergenic | 20.0% |
| !! | ATTAGTATTACACAATAGAT+TGG | + | chr7_3:51630219-51630238 | None:intergenic | 20.0% |
| !!! | TTATTATGTTTTTCCTCTTA+AGG | - | chr7_3:51630586-51630605 | Msa1108640:intron | 20.0% |
| ! | AGAAACTAGATTGAATTGAA+AGG | + | chr7_3:51628530-51628549 | None:intergenic | 25.0% |
| ! | TAACTATCAAAATTCTCATC+TGG | - | chr7_3:51628687-51628706 | Msa1108640:CDS | 25.0% |
| ! | AACTATCAAAATTCTCATCT+GGG | - | chr7_3:51628688-51628707 | Msa1108640:CDS | 25.0% |
| !!! | TCAGATGTTGATGAATTTTA+CGG | - | chr7_3:51628782-51628801 | Msa1108640:CDS | 25.0% |
| !! | TATTATGTGTGAATTTTGCA+TGG | - | chr7_3:51628953-51628972 | Msa1108640:CDS | 25.0% |
| !! | ATTTATGAGTGAATTTTGCA+TGG | - | chr7_3:51629153-51629172 | Msa1108640:intron | 25.0% |
| !! | GTTTTGTGTTTGTTTAGATA+AGG | - | chr7_3:51629244-51629263 | Msa1108640:intron | 25.0% |
| ! | ATAGTTTCTAACACTAAACA+AGG | + | chr7_3:51629571-51629590 | None:intergenic | 25.0% |
| ! | TTGTTTAGTGTTAGAAACTA+TGG | - | chr7_3:51629570-51629589 | Msa1108640:intron | 25.0% |
| ! | TAGAAACTATGGCTTATAAT+TGG | - | chr7_3:51629581-51629600 | Msa1108640:intron | 25.0% |
| !!! | ATTTGTTAATTTTCCTGACT+TGG | + | chr7_3:51629737-51629756 | None:intergenic | 25.0% |
| !!! | GAATTATTTTAGATTGGTGA+TGG | - | chr7_3:51629765-51629784 | Msa1108640:intron | 25.0% |
| ! | GAAATACCAAAATTATATGG+CGG | + | chr7_3:51629880-51629899 | None:intergenic | 25.0% |
| !!! | GCCATATAATTTTGGTATTT+CGG | - | chr7_3:51629879-51629898 | Msa1108640:intron | 25.0% |
| ! | AACAATGCAACTCATTAAAT+TGG | - | chr7_3:51630276-51630295 | Msa1108640:intron | 25.0% |
| ! | AACTCATTAAATTGGTATAG+TGG | - | chr7_3:51630284-51630303 | Msa1108640:intron | 25.0% |
| !!! | TGTTATTTTAAGTCTTGCTT+AGG | + | chr7_3:51630472-51630491 | None:intergenic | 25.0% |
| ! | ACAAGTATATCACTAGAAAA+GGG | + | chr7_3:51630891-51630910 | None:intergenic | 25.0% |
| ! | AACAAGTATATCACTAGAAA+AGG | + | chr7_3:51630892-51630911 | None:intergenic | 25.0% |
| !! | TAGTGATATACTTGTTTCTT+TGG | - | chr7_3:51630896-51630915 | Msa1108640:intron | 25.0% |
| TGAAGAACGTAGAGAAAAAA+GGG | + | chr7_3:51628455-51628474 | None:intergenic | 30.0% | |
| ATGAAGAACGTAGAGAAAAA+AGG | + | chr7_3:51628456-51628475 | None:intergenic | 30.0% | |
| ATTGAATTGAAAGGATAGAG+GGG | + | chr7_3:51628521-51628540 | None:intergenic | 30.0% | |
| GATTGAATTGAAAGGATAGA+GGG | + | chr7_3:51628522-51628541 | None:intergenic | 30.0% | |
| AGATTGAATTGAAAGGATAG+AGG | + | chr7_3:51628523-51628542 | None:intergenic | 30.0% | |
| AATTGAGATCTGAGAAAAAG+GGG | + | chr7_3:51628564-51628583 | None:intergenic | 30.0% | |
| CAATTGAGATCTGAGAAAAA+GGG | + | chr7_3:51628565-51628584 | None:intergenic | 30.0% | |
| TCAATTGAGATCTGAGAAAA+AGG | + | chr7_3:51628566-51628585 | None:intergenic | 30.0% | |
| TCTCAATTGAGTTATGGAAA+TGG | - | chr7_3:51628576-51628595 | Msa1108640:exon | 30.0% | |
| ! | ATCTTTGAAGATCTCTTCAA+CGG | + | chr7_3:51628617-51628636 | None:intergenic | 30.0% |
| ! | TGTTGTTGTTGAATTTGACT+AGG | - | chr7_3:51628980-51628999 | Msa1108640:CDS | 30.0% |
| ! | GTTGTTGTTGAATTTGACTA+GGG | - | chr7_3:51628981-51629000 | Msa1108640:CDS | 30.0% |
| GTGTTGTGTTTGTTTAGATA+AGG | - | chr7_3:51629116-51629135 | Msa1108640:intron | 30.0% | |
| ! | AAGGATAATTTGTGTCTCTA+TGG | - | chr7_3:51629263-51629282 | Msa1108640:intron | 30.0% |
| ATGGTCATAATAATGAAAGC+TGG | - | chr7_3:51629282-51629301 | Msa1108640:intron | 30.0% | |
| TGGTCATAATAATGAAAGCT+GGG | - | chr7_3:51629283-51629302 | Msa1108640:intron | 30.0% | |
| ATAGAATGTACCTTTCATTG+CGG | + | chr7_3:51629475-51629494 | None:intergenic | 30.0% | |
| ! | TCAATGACAATGACAGATTT+TGG | - | chr7_3:51629847-51629866 | Msa1108640:intron | 30.0% |
| GCCGAAATACCAAAATTATA+TGG | + | chr7_3:51629883-51629902 | None:intergenic | 30.0% | |
| ! | CATTTTATGGTTGATTACAG+AGG | + | chr7_3:51629957-51629976 | None:intergenic | 30.0% |
| AACTTTCATGCTGCATAAAA+AGG | + | chr7_3:51630005-51630024 | None:intergenic | 30.0% | |
| CAAATACAAGAACAGTGAAA+AGG | + | chr7_3:51630142-51630161 | None:intergenic | 30.0% | |
| TTACACAATAGATTGGACAA+GGG | + | chr7_3:51630212-51630231 | None:intergenic | 30.0% | |
| ATTACACAATAGATTGGACA+AGG | + | chr7_3:51630213-51630232 | None:intergenic | 30.0% | |
| !! | AGGTTTTATGATGTTGATTG+TGG | + | chr7_3:51630452-51630471 | None:intergenic | 30.0% |
| !! | TATCACTTTTCTTTAATCGG+TGG | - | chr7_3:51630563-51630582 | Msa1108640:intron | 30.0% |
| CAATGAATACACTCAATCTA+AGG | + | chr7_3:51630655-51630674 | None:intergenic | 30.0% | |
| TAGATTGAGTGTATTCATTG+TGG | - | chr7_3:51630655-51630674 | Msa1108640:intron | 30.0% | |
| !!! | ACTTGTTTCTTTGGTTCTTT+TGG | - | chr7_3:51630905-51630924 | Msa1108640:intron | 30.0% |
| !! | CTTTTACGTTTGACTTTAGT+AGG | - | chr7_3:51631332-51631351 | Msa1108640:five_prime_UTR | 30.0% |
| ! | GTAGTGTGTGTTTGTTACTA+AGG | + | chr7_3:51628412-51628431 | None:intergenic | 35.0% |
| ACCATGAGAATGGATCAAAA+GGG | + | chr7_3:51628494-51628513 | None:intergenic | 35.0% | |
| AACCATGAGAATGGATCAAA+AGG | + | chr7_3:51628495-51628514 | None:intergenic | 35.0% | |
| CTCAGATCTCAATTGAGTTA+TGG | - | chr7_3:51628570-51628589 | Msa1108640:exon | 35.0% | |
| ATCCAGGTAAAGTGTATTAG+CGG | - | chr7_3:51628813-51628832 | Msa1108640:CDS | 35.0% | |
| AGGTACATTCTATCTTGCTT+TGG | - | chr7_3:51629482-51629501 | Msa1108640:intron | 35.0% | |
| TACATTCTATCTTGCTTTGG+TGG | - | chr7_3:51629485-51629504 | Msa1108640:intron | 35.0% | |
| TTGGTGGAGATGTTTGTATA+TGG | - | chr7_3:51629501-51629520 | Msa1108640:intron | 35.0% | |
| GTCGTAATTGAAGTTCATTG+TGG | - | chr7_3:51629523-51629542 | Msa1108640:intron | 35.0% | |
| TGGCTTATAATTGGAGTATG+TGG | - | chr7_3:51629590-51629609 | Msa1108640:intron | 35.0% | |
| !! | GTTTTGTTGATATGTGATGC+TGG | - | chr7_3:51629630-51629649 | Msa1108640:intron | 35.0% |
| ! | GACAATCCGCCATATAATTT+TGG | - | chr7_3:51629871-51629890 | Msa1108640:intron | 35.0% |
| ! | ACCATAAAATGTGATGACGT+AGG | - | chr7_3:51629966-51629985 | Msa1108640:intron | 35.0% |
| ! | TCCTACGTCATCACATTTTA+TGG | + | chr7_3:51629970-51629989 | None:intergenic | 35.0% |
| ! | TAAAATGTGATGACGTAGGA+AGG | - | chr7_3:51629970-51629989 | Msa1108640:intron | 35.0% |
| ATGAAAGTTGTGACTTTGGT+TGG | - | chr7_3:51630016-51630035 | Msa1108640:intron | 35.0% | |
| TGAAAGTTGTGACTTTGGTT+GGG | - | chr7_3:51630017-51630036 | Msa1108640:intron | 35.0% | |
| CATAGAATGTGACAACTTCT+TGG | + | chr7_3:51630044-51630063 | None:intergenic | 35.0% | |
| GTATCCTCAATCTTAATCCA+TGG | - | chr7_3:51630184-51630203 | Msa1108640:intron | 35.0% | |
| TATGACAACGACTCTGTTAT+AGG | - | chr7_3:51630331-51630350 | Msa1108640:CDS | 35.0% | |
| CACATTTGAGTGTGAATGTT+TGG | + | chr7_3:51630370-51630389 | None:intergenic | 35.0% | |
| ATTTCACACTTTAGCAACTG+AGG | + | chr7_3:51630395-51630414 | None:intergenic | 35.0% | |
| ATTGAAGAGAAAGCCTTAAG+AGG | + | chr7_3:51630602-51630621 | None:intergenic | 35.0% | |
| CAGATGGTTCCTTATATTGA+TGG | - | chr7_3:51630708-51630727 | Msa1108640:intron | 35.0% | |
| TCAGGGAAACCATCAATATA+AGG | + | chr7_3:51630720-51630739 | None:intergenic | 35.0% | |
| ATGGTTTCCCTGATTCTTTA+TGG | - | chr7_3:51630727-51630746 | Msa1108640:intron | 35.0% | |
| TTTCCTGCCATAAAGAATCA+GGG | + | chr7_3:51630737-51630756 | None:intergenic | 35.0% | |
| AAAAGGGAAAACACTAACCT+TGG | + | chr7_3:51630875-51630894 | None:intergenic | 35.0% | |
| TTGGTTGTGATATATGTGAG+AGG | - | chr7_3:51631096-51631115 | Msa1108640:intron | 35.0% | |
| CTTGTATTGCTTTATGCTCT+CGG | + | chr7_3:51631162-51631181 | None:intergenic | 35.0% | |
| !! | CCAAATTGCCTTTGAAACTA+GGG | + | chr7_3:51631215-51631234 | None:intergenic | 35.0% |
| !! | TCCAAATTGCCTTTGAAACT+AGG | + | chr7_3:51631216-51631235 | None:intergenic | 35.0% |
| CAGAAGTGATTGATGTTTCA+TGG | - | chr7_3:51631251-51631270 | Msa1108640:five_prime_UTR | 35.0% | |
| TTGATGTTTCATGGCTGAAA+AGG | - | chr7_3:51631260-51631279 | Msa1108640:five_prime_UTR | 35.0% | |
| CCATGAGAATGGATCAAAAG+GGG | + | chr7_3:51628493-51628512 | None:intergenic | 40.0% | |
| GAGAAAAAGGGGTTTGGATT+TGG | + | chr7_3:51628553-51628572 | None:intergenic | 40.0% | |
| AGATCTGAGAAAAAGGGGTT+TGG | + | chr7_3:51628559-51628578 | None:intergenic | 40.0% | |
| ATCCGCTAATACACTTTACC+TGG | + | chr7_3:51628818-51628837 | None:intergenic | 40.0% | |
| ! | GCAAAATTGATTCCAAGAGC+TGG | + | chr7_3:51629353-51629372 | None:intergenic | 40.0% |
| ! | GGAATCAATTTTGCTCGAGA+CGG | - | chr7_3:51629359-51629378 | Msa1108640:intron | 40.0% |
| CAAGAGAAAGCCAATCTCTA+CGG | + | chr7_3:51629391-51629410 | None:intergenic | 40.0% | |
| ! | TGATTCATGGTTGCTTTCTG+TGG | - | chr7_3:51629424-51629443 | Msa1108640:intron | 40.0% |
| GTTGATATGTGATGCTGGAT+TGG | - | chr7_3:51629635-51629654 | Msa1108640:intron | 40.0% | |
| ! | GGATTGGTACATACATGCAT+TGG | - | chr7_3:51629651-51629670 | Msa1108640:intron | 40.0% |
| GCTAATGTTGCTCGTAACAT+AGG | + | chr7_3:51629708-51629727 | None:intergenic | 40.0% | |
| !! | AATTTTGGTATTTCGGCCGA+TGG | - | chr7_3:51629886-51629905 | Msa1108640:intron | 40.0% |
| AGGCAGATAAAGTAAGCCAT+CGG | + | chr7_3:51629905-51629924 | None:intergenic | 40.0% | |
| ATGGCTTACTTTATCTGCCT+TGG | - | chr7_3:51629905-51629924 | Msa1108640:intron | 40.0% | |
| CAGCATGAAAGTTGTGACTT+TGG | - | chr7_3:51630012-51630031 | Msa1108640:intron | 40.0% | |
| GAAAGTTGTGACTTTGGTTG+GGG | - | chr7_3:51630018-51630037 | Msa1108640:intron | 40.0% | |
| GGATACTTGAGACTAAGAGA+AGG | + | chr7_3:51630170-51630189 | None:intergenic | 40.0% | |
| ATTCTCAGAGTCGATGGATA+AGG | + | chr7_3:51630251-51630270 | None:intergenic | 40.0% | |
| !! | TTATCCATCGACTCTGAGAA+TGG | - | chr7_3:51630250-51630269 | Msa1108640:intron | 40.0% |
| TTTCCCTGATTCTTTATGGC+AGG | - | chr7_3:51630731-51630750 | Msa1108640:intron | 40.0% | |
| GTTTCCTGCCATAAAGAATC+AGG | + | chr7_3:51630738-51630757 | None:intergenic | 40.0% | |
| GTCACAATTTCGAAAACGGT+GGG | + | chr7_3:51630787-51630806 | None:intergenic | 40.0% | |
| GTCGGTCACAATTTCGAAAA+CGG | + | chr7_3:51630791-51630810 | None:intergenic | 40.0% | |
| ! | TTTTCGAAATTGTGACCGAC+AGG | - | chr7_3:51630791-51630810 | Msa1108640:intron | 40.0% |
| ! | GTCCTTAATTGGTTTCCTGT+CGG | + | chr7_3:51630809-51630828 | None:intergenic | 40.0% |
| !!! | TTTGGTTCTTTTGGCTCGTT+AGG | - | chr7_3:51630914-51630933 | Msa1108640:intron | 40.0% |
| ! | ATTACAATGCCGACGAGTTT+TGG | - | chr7_3:51631072-51631091 | Msa1108640:intron | 40.0% |
| ACAACCAATCCAAAACTCGT+CGG | + | chr7_3:51631084-51631103 | None:intergenic | 40.0% | |
| GTTGTGATATATGTGAGAGG+TGG | - | chr7_3:51631099-51631118 | Msa1108640:intron | 40.0% | |
| TGATCTTCACACATTTCCCA+TGG | + | chr7_3:51631127-51631146 | None:intergenic | 40.0% | |
| CCCTAGTTTCAAAGGCAATT+TGG | - | chr7_3:51631212-51631231 | Msa1108640:exon | 40.0% | |
| ! | CCCCTTTTGATCCATTCTCA+TGG | - | chr7_3:51628490-51628509 | Msa1108640:three_prime_UTR | 45.0% |
| AGATCTCTTCAACGGTACGA+GGG | + | chr7_3:51628609-51628628 | None:intergenic | 45.0% | |
| AAGATCTCTTCAACGGTACG+AGG | + | chr7_3:51628610-51628629 | None:intergenic | 45.0% | |
| ! | TTGAGTGAGAGCACGAACAA+CGG | + | chr7_3:51628659-51628678 | None:intergenic | 45.0% |
| ! | TTTTACGGTCTCTGTGATCC+AGG | - | chr7_3:51628797-51628816 | Msa1108640:CDS | 45.0% |
| ACGGTATGAACCGTAGAGAT+TGG | - | chr7_3:51629378-51629397 | Msa1108640:intron | 45.0% | |
| TTGCTGTGCACAGTGATTCA+TGG | - | chr7_3:51629411-51629430 | Msa1108640:intron | 45.0% | |
| CTTTCTGTGGCGTTCTATCT+TGG | - | chr7_3:51629437-51629456 | Msa1108640:intron | 45.0% | |
| CTCGTCTTAACCGCAATGAA+AGG | - | chr7_3:51629462-51629481 | Msa1108640:intron | 45.0% | |
| GTTACGAGCAACATTAGCTG+AGG | - | chr7_3:51629710-51629729 | Msa1108640:intron | 45.0% | |
| GTGTTGTCAAATTGCTGCCA+AGG | + | chr7_3:51629925-51629944 | None:intergenic | 45.0% | |
| ! | GGAGCCATGGATTAAGATTG+AGG | + | chr7_3:51630191-51630210 | None:intergenic | 45.0% |
| ATCTGCTGCAACTTCACAGA+TGG | - | chr7_3:51630692-51630711 | Msa1108640:intron | 45.0% | |
| GGTCACAATTTCGAAAACGG+TGG | + | chr7_3:51630788-51630807 | None:intergenic | 45.0% | |
| GACCGACAGGAAACCAATTA+AGG | - | chr7_3:51630804-51630823 | Msa1108640:intron | 45.0% | |
| !! | GCTGGCTTGTTGTCCTTAAT+TGG | + | chr7_3:51630820-51630839 | None:intergenic | 45.0% |
| CACTGGATCTCTGCGAATAA+AGG | + | chr7_3:51630950-51630969 | None:intergenic | 45.0% | |
| TATTCGCAGAGATCCAGTGA+CGG | - | chr7_3:51630951-51630970 | Msa1108640:intron | 45.0% | |
| AAGCAACCCAAAGTTTCCTG+TGG | - | chr7_3:51630983-51631002 | Msa1108640:intron | 45.0% | |
| CGTCATCCACAGGAAACTTT+GGG | + | chr7_3:51630992-51631011 | None:intergenic | 45.0% | |
| CCAAAGTTTCCTGTGGATGA+CGG | - | chr7_3:51630990-51631009 | Msa1108640:CDS | 45.0% | |
| GAGCACAGTGAAACACTTTG+CGG | - | chr7_3:51631035-51631054 | Msa1108640:intron | 45.0% | |
| AGCACAGTGAAACACTTTGC+GGG | - | chr7_3:51631036-51631055 | Msa1108640:intron | 45.0% | |
| !!! | AATGCCGACGAGTTTTGGAT+TGG | - | chr7_3:51631077-51631096 | Msa1108640:intron | 45.0% |
| ATATGTGAGAGGTGGTACCA+TGG | - | chr7_3:51631107-51631126 | Msa1108640:intron | 45.0% | |
| TATGTGAGAGGTGGTACCAT+GGG | - | chr7_3:51631108-51631127 | Msa1108640:intron | 45.0% | |
| GGAACAGACCCTAGTTTCAA+AGG | - | chr7_3:51631204-51631223 | Msa1108640:exon | 45.0% | |
| !! | AAAAAAAAAAAAAAAAAAAC+GGG | - | chr7_3:51630112-51630131 | Msa1108640:intron | 5.0% |
| GAGGGGTGAAACCATGAGAA+TGG | + | chr7_3:51628504-51628523 | None:intergenic | 50.0% | |
| GTTGTTCGTGCTCTCACTCA+AGG | - | chr7_3:51628658-51628677 | Msa1108640:CDS | 50.0% | |
| ! | TGATTCCAAGAGCTGGCTCA+GGG | + | chr7_3:51629346-51629365 | None:intergenic | 50.0% |
| ! | TTGATTCCAAGAGCTGGCTC+AGG | + | chr7_3:51629347-51629366 | None:intergenic | 50.0% |
| CATTAGCTGAGGTCCAAGTC+AGG | - | chr7_3:51629721-51629740 | Msa1108640:intron | 50.0% | |
| TAGATTGGACAAGGGAGCCA+TGG | + | chr7_3:51630204-51630223 | None:intergenic | 50.0% | |
| GAGTCGATGGATAAGGTCAG+TGG | + | chr7_3:51630244-51630263 | None:intergenic | 50.0% | |
| TGCTCCATTCTCAGAGTCGA+TGG | + | chr7_3:51630257-51630276 | None:intergenic | 50.0% | |
| GTCGTTGTCATACCAGCAGA+CGG | + | chr7_3:51630323-51630342 | None:intergenic | 50.0% | |
| GTGTGAATGTTTGGCAGTGC+AGG | + | chr7_3:51630361-51630380 | None:intergenic | 50.0% | |
| TAAGGACAACAAGCCAGCAG+CGG | - | chr7_3:51630822-51630841 | Msa1108640:intron | 50.0% | |
| !! | ACTAACCTTGGTGCTTCCTC+GGG | + | chr7_3:51630863-51630882 | None:intergenic | 50.0% |
| !! | CACTAACCTTGGTGCTTCCT+CGG | + | chr7_3:51630864-51630883 | None:intergenic | 50.0% |
| ATTCGCAGAGATCCAGTGAC+GGG | - | chr7_3:51630952-51630971 | Msa1108640:intron | 50.0% | |
| CCGTCATCCACAGGAAACTT+TGG | + | chr7_3:51630993-51631012 | None:intergenic | 50.0% | |
| ! | TCCTGTGGATGACGGTTATG+AGG | - | chr7_3:51630998-51631017 | Msa1108640:CDS | 50.0% |
| TCCTCATAACCGTCATCCAC+AGG | + | chr7_3:51631002-51631021 | None:intergenic | 50.0% | |
| ! | TGTGGATGACGGTTATGAGG+AGG | - | chr7_3:51631001-51631020 | Msa1108640:intron | 50.0% |
| TGTGAAGATCACTCCTGCCA+AGG | - | chr7_3:51631136-51631155 | Msa1108640:CDS | 50.0% | |
| TTGCTTTATGCTCTCGGCCT+TGG | + | chr7_3:51631156-51631175 | None:intergenic | 50.0% | |
| GGAAGTAACTCTGCCAGCAG+AGG | - | chr7_3:51629304-51629323 | Msa1108640:intron | 55.0% | |
| GTTGTCATACCAGCAGACGG+CGG | + | chr7_3:51630320-51630339 | None:intergenic | 55.0% | |
| GACAGTGGAAGCAAATCCCG+AGG | - | chr7_3:51630844-51630863 | Msa1108640:intron | 55.0% | |
| !! | CAAATCCCGAGGAAGCACCA+AGG | - | chr7_3:51630855-51630874 | Msa1108640:intron | 55.0% |
| !!! | GCTTTTGACTTGCCCGTCAC+TGG | + | chr7_3:51630967-51630986 | None:intergenic | 55.0% |
| ! | GGATGACGGTTATGAGGAGG+AGG | - | chr7_3:51631004-51631023 | Msa1108640:intron | 55.0% |
| TGACGGTTATGAGGAGGAGG+AGG | - | chr7_3:51631007-51631026 | Msa1108640:intron | 55.0% | |
| GAAACACTTTGCGGGAGCTG+TGG | - | chr7_3:51631044-51631063 | Msa1108640:intron | 55.0% | |
| TTTATGCTCTCGGCCTTGGC+AGG | + | chr7_3:51631152-51631171 | None:intergenic | 55.0% | |
| AGTGCCCTCAATGCAGCATC+AGG | - | chr7_3:51631180-51631199 | Msa1108640:CDS | 55.0% | |
| TCCGCCTGATGCTGCATTGA+GGG | + | chr7_3:51631187-51631206 | None:intergenic | 55.0% | |
| TTCCGCCTGATGCTGCATTG+AGG | + | chr7_3:51631188-51631207 | None:intergenic | 55.0% | |
| GCCAGCAGAGGAAGTTCCAC+CGG | - | chr7_3:51629316-51629335 | Msa1108640:intron | 60.0% | |
| TCCGGTGGAACTTCCTCTGC+TGG | + | chr7_3:51629320-51629339 | None:intergenic | 60.0% | |
| ! | AGAGCTGGCTCAGGGAGTTC+CGG | + | chr7_3:51629338-51629357 | None:intergenic | 60.0% |
| GAACTCCCTGAGCCAGCTCT+TGG | - | chr7_3:51629338-51629357 | Msa1108640:intron | 60.0% | |
| TTGTAGTCACCGCCGTCTGC+TGG | - | chr7_3:51630308-51630327 | Msa1108640:intron | 60.0% | |
| AACAAGCCAGCAGCGGACAG+TGG | - | chr7_3:51630829-51630848 | Msa1108640:intron | 60.0% | |
| TTGCTTCCACTGTCCGCTGC+TGG | + | chr7_3:51630838-51630857 | None:intergenic | 60.0% | |
| ACACTTTGCGGGAGCTGTGG+CGG | - | chr7_3:51631047-51631066 | Msa1108640:intron | 60.0% | |
| GCCCTCAATGCAGCATCAGG+CGG | - | chr7_3:51631183-51631202 | Msa1108640:CDS | 60.0% | |
| ! | GCTGGCTCAGGGAGTTCCGG+TGG | + | chr7_3:51629335-51629354 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 51628399 | 51631405 | 51628399 | ID=Msa1108640;Name=Msa1108640 |
| chr7_3 | mRNA | 51628399 | 51631405 | 51628399 | ID=Msa1108640-mRNA-1;Parent=Msa1108640;Name=Msa1108640-mRNA-1;_AED=0.05;_eAED=0.05;_QI=190|1|1|1|1|1|5|188|242 |
| chr7_3 | exon | 51628399 | 51628844 | 51628399 | ID=Msa1108640-mRNA-1:exon:10684;Parent=Msa1108640-mRNA-1 |
| chr7_3 | exon | 51628928 | 51629051 | 51628928 | ID=Msa1108640-mRNA-1:exon:10683;Parent=Msa1108640-mRNA-1 |
| chr7_3 | exon | 51630321 | 51630543 | 51630321 | ID=Msa1108640-mRNA-1:exon:10682;Parent=Msa1108640-mRNA-1 |
| chr7_3 | exon | 51630986 | 51631018 | 51630986 | ID=Msa1108640-mRNA-1:exon:10681;Parent=Msa1108640-mRNA-1 |
| chr7_3 | exon | 51631125 | 51631405 | 51631125 | ID=Msa1108640-mRNA-1:exon:10680;Parent=Msa1108640-mRNA-1 |
| chr7_3 | five_prime_UTR | 51631216 | 51631405 | 51631216 | ID=Msa1108640-mRNA-1:five_prime_utr;Parent=Msa1108640-mRNA-1 |
| chr7_3 | CDS | 51631125 | 51631215 | 51631125 | ID=Msa1108640-mRNA-1:cds;Parent=Msa1108640-mRNA-1 |
| chr7_3 | CDS | 51630986 | 51631018 | 51630986 | ID=Msa1108640-mRNA-1:cds;Parent=Msa1108640-mRNA-1 |
| chr7_3 | CDS | 51630321 | 51630543 | 51630321 | ID=Msa1108640-mRNA-1:cds;Parent=Msa1108640-mRNA-1 |
| chr7_3 | CDS | 51628928 | 51629051 | 51628928 | ID=Msa1108640-mRNA-1:cds;Parent=Msa1108640-mRNA-1 |
| chr7_3 | CDS | 51628587 | 51628844 | 51628587 | ID=Msa1108640-mRNA-1:cds;Parent=Msa1108640-mRNA-1 |
| chr7_3 | three_prime_UTR | 51628399 | 51628586 | 51628399 | ID=Msa1108640-mRNA-1:three_prime_utr;Parent=Msa1108640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
