AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1028530

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1028530 MtrunA17_Chr7g0248691 96.037 328 13 0 1 328 1 328 0.0 647
Msa1028530 MtrunA17_Chr8g0348311 53.687 339 124 6 1 312 1 333 2.57e-90 273
Msa1028530 MtrunA17_Chr2g0293481 49.000 200 72 6 135 306 238 435 9.03e-49 170
Msa1028530 MtrunA17_Chr1g0202461 66.667 111 35 2 132 240 238 348 1.88e-44 156
Msa1028530 MtrunA17_Chr8g0387501 40.517 232 96 7 4 229 9 204 2.24e-40 142
Msa1028530 MtrunA17_Chr2g0284321 60.440 91 30 1 134 218 9 99 1.03e-33 123
Msa1028530 MtrunA17_Chr7g0270051 49.635 137 53 3 134 261 24 153 2.29e-33 124
Msa1028530 MtrunA17_Chr8g0379461 49.587 121 40 2 135 243 45 156 4.13e-32 120
Msa1028530 MtrunA17_Chr2g0319961 58.947 95 28 1 135 218 50 144 1.55e-31 119
Msa1028530 MtrunA17_Chr1g0147881 62.195 82 26 2 135 211 238 319 5.22e-29 114
Msa1028530 MtrunA17_Chr4g0071521 48.780 123 42 3 102 211 188 302 4.27e-28 111
Msa1028530 MtrunA17_Chr5g0401821 60.241 83 28 1 134 211 174 256 1.79e-27 108
Msa1028530 MtrunA17_Chr4g0053281 60.976 82 27 2 135 211 242 323 1.56e-26 107
Msa1028530 MtrunA17_Chr2g0289181 51.136 88 42 1 141 227 1 88 5.63e-25 100
Msa1028530 MtrunA17_Chr1g0184691 57.500 80 29 1 137 211 271 350 2.77e-24 101
Msa1028530 MtrunA17_Chr3g0139021 43.478 115 53 4 117 219 266 380 1.67e-23 99.8
Msa1028530 MtrunA17_Chr7g0228941 49.367 79 35 1 138 211 31 109 2.10e-22 90.9
Msa1028530 MtrunA17_Chr4g0051881 56.522 69 26 2 155 223 179 243 6.37e-19 86.3
Msa1028530 MtrunA17_Chr7g0270831 52.055 73 35 0 152 224 214 286 2.81e-18 85.1
Msa1028530 MtrunA17_Chr7g0218081 43.564 101 55 2 132 231 387 486 3.50e-18 85.1
Msa1028530 MtrunA17_Chr7g0218081 30.496 141 80 5 85 214 153 286 2.31e-11 64.7
Msa1028530 MtrunA17_Chr7g0270191 48.148 81 39 2 155 235 146 223 3.67e-18 83.2
Msa1028530 MtrunA17_Chr1g0194481 41.176 102 49 4 130 222 127 226 4.61e-18 83.6
Msa1028530 MtrunA17_Chr5g0418191 42.342 111 60 3 110 217 273 382 5.74e-18 84.3
Msa1028530 MtrunA17_Chr5g0418191 32.653 147 71 5 87 214 72 209 7.84e-11 62.8
Msa1028530 MtrunA17_Chr7g0263531 45.918 98 36 3 133 214 324 420 1.38e-17 83.2
Msa1028530 MtrunA17_Chr7g0263531 45.833 72 37 2 153 224 188 257 7.91e-13 68.9
Msa1028530 MtrunA17_Chr2g0288871 54.688 64 29 0 151 214 302 365 2.21e-17 82.8
Msa1028530 MtrunA17_Chr5g0443131 55.000 60 26 1 155 214 158 216 2.24e-17 81.3
Msa1028530 MtrunA17_Chr3g0126391 31.720 186 108 5 155 328 134 312 3.68e-17 81.3
Msa1028530 MtrunA17_Chr4g0042831 46.154 91 46 3 129 217 251 340 7.94e-17 80.5
Msa1028530 MtrunA17_Chr4g0042831 41.333 75 43 1 140 214 131 204 5.40e-12 66.2
Msa1028530 MtrunA17_Chr3g0101131 42.157 102 45 3 131 219 379 479 1.05e-16 80.9
Msa1028530 MtrunA17_Chr4g0025051 48.000 75 39 0 150 224 331 405 1.66e-16 80.5
Msa1028530 MtrunA17_Chr4g0051181 56.140 57 25 0 159 215 248 304 7.59e-16 78.2
Msa1028530 MtrunA17_Chr4g0025061 45.333 75 41 0 150 224 356 430 7.62e-16 78.2
Msa1028530 MtrunA17_Chr5g0445311 38.095 105 48 2 131 219 325 428 8.74e-16 78.2
Msa1028530 MtrunA17_Chr3g0099641 44.595 74 41 0 151 224 248 321 8.91e-16 77.8
Msa1028530 MtrunA17_Chr7g0216891 40.659 91 51 1 134 224 202 289 1.20e-15 77.8
Msa1028530 MtrunA17_Chr5g0418781 56.140 57 24 1 155 211 125 180 1.80e-15 75.5
Msa1028530 MtrunA17_Chr4g0075201 50.794 63 31 0 152 214 265 327 2.14e-15 76.6
Msa1028530 MtrunA17_Chr7g0238921 36.000 150 82 5 152 300 122 258 2.33e-15 75.5
Msa1028530 MtrunA17_Chr4g0001361 43.243 74 42 0 152 225 160 233 2.44e-15 75.5
Msa1028530 MtrunA17_Chr7g0275531 42.000 100 45 3 131 217 88 187 3.04e-15 75.5
Msa1028530 MtrunA17_Chr8g0387981 42.353 85 41 2 133 209 105 189 3.92e-15 75.5
Msa1028530 MtrunA17_Chr7g0249311 36.207 116 66 4 105 219 348 456 4.93e-15 75.9
Msa1028530 MtrunA17_Chr7g0249311 48.387 62 30 2 153 214 178 237 3.34e-11 64.3
Msa1028530 MtrunA17_Chr2g0302391 50.000 70 35 0 155 224 212 281 4.99e-15 75.5
Msa1028530 MtrunA17_Chr2g0322391 42.683 82 35 1 133 214 340 409 5.38e-15 75.9
Msa1028530 MtrunA17_Chr2g0333851 43.077 65 37 0 152 216 167 231 8.75e-15 73.9
Msa1028530 MtrunA17_Chr2g0294231 48.333 60 30 1 155 214 204 262 1.28e-14 73.9
Msa1028530 MtrunA17_Chr3g0079691 49.231 65 32 1 155 219 496 559 3.22e-14 73.6
Msa1028530 MtrunA17_Chr3g0079691 50.000 62 29 2 153 214 279 338 6.17e-12 66.6
Msa1028530 MtrunA17_Chr6g0485431 48.148 81 37 4 142 218 141 220 4.08e-14 72.4
Msa1028530 MtrunA17_Chr3g0129321 46.032 63 33 1 152 214 116 177 5.14e-14 70.1
Msa1028530 MtrunA17_Chr4g0060271 41.975 81 44 1 134 214 238 315 5.92e-14 72.8
Msa1028530 MtrunA17_Chr8g0347251 28.358 201 122 5 114 303 96 285 6.27e-14 71.6
Msa1028530 MtrunA17_Chr4g0074001 48.485 66 33 1 152 217 357 421 6.32e-14 72.4
Msa1028530 MtrunA17_Chr5g0447701 43.373 83 44 2 152 234 250 329 7.54e-14 71.6
Msa1028530 MtrunA17_Chr8g0383251 47.619 63 32 1 152 214 106 167 7.85e-14 68.9
Msa1028530 MtrunA17_Chr4g0004911 51.667 60 28 1 155 214 337 395 9.90e-14 71.6
Msa1028530 MtrunA17_Chr4g0004911 45.000 60 32 1 155 214 185 243 7.23e-11 63.2
Msa1028530 MtrunA17_Chr1g0150801 49.180 61 30 1 152 212 100 159 1.03e-13 68.2
Msa1028530 MtrunA17_Chr1g0150281 47.368 57 30 0 155 211 141 197 1.11e-13 70.5
Msa1028530 MtrunA17_Chr7g0249301 49.180 61 30 1 155 215 293 352 1.71e-13 70.5
Msa1028530 MtrunA17_Chr7g0249301 49.180 61 29 2 155 215 63 121 4.33e-12 66.2
Msa1028530 MtrunA17_Chr7g0243891 41.860 86 40 2 155 231 375 459 1.87e-13 70.9
Msa1028530 MtrunA17_Chr4g0068541 44.262 61 33 1 155 215 209 268 1.96e-13 70.5
Msa1028530 MtrunA17_Chr3g0136961 40.789 76 38 1 143 211 120 195 6.80e-13 68.2
Msa1028530 MtrunA17_Chr4g0024391 42.667 75 43 0 150 224 225 299 7.32e-13 68.9
Msa1028530 MtrunA17_Chr3g0106491 43.590 78 42 2 152 229 363 438 1.12e-12 68.6
Msa1028530 MtrunA17_Chr7g0224801 43.548 62 34 1 152 213 91 151 1.62e-12 65.1
Msa1028530 MtrunA17_Chr1g0189391 50.794 63 29 2 150 211 93 154 1.83e-12 67.4
Msa1028530 MtrunA17_Chr5g0432161 45.588 68 36 1 152 219 419 485 2.17e-12 67.8
Msa1028530 MtrunA17_Chr8g0383351 44.118 68 31 2 150 211 150 216 3.49e-12 65.1
Msa1028530 MtrunA17_Chr3g0129361 46.053 76 37 3 155 230 145 216 4.07e-12 64.7
Msa1028530 MtrunA17_Chr8g0335811 41.573 89 47 3 126 211 124 210 5.43e-12 64.7
Msa1028530 MtrunA17_Chr1g0150271 40.625 64 38 0 152 215 99 162 1.39e-11 63.9
Msa1028530 MtrunA17_Chr1g0188941 45.902 61 32 1 155 215 52 111 5.10e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1028530 AT4G01250.1 46.974 347 112 13 1 325 1 297 7.37e-80 245
Msa1028530 AT5G52830.1 39.604 303 127 6 3 267 4 288 2.96e-44 155
Msa1028530 AT4G23550.1 42.520 254 114 6 3 249 8 236 1.10e-41 147
Msa1028530 AT2G34830.1 68.367 98 21 1 135 222 186 283 4.52e-41 148
Msa1028530 AT2G34830.2 68.367 98 21 1 135 222 195 292 5.65e-41 148
Msa1028530 AT1G30650.1 62.617 107 27 2 129 222 179 285 1.39e-39 144
Msa1028530 AT5G45050.2 58.879 107 43 1 117 222 1114 1220 3.45e-36 139
Msa1028530 AT5G45050.1 58.879 107 43 1 117 222 1142 1248 3.92e-36 139
Msa1028530 AT5G45050.4 58.333 108 44 1 116 222 1002 1109 4.80e-36 138
Msa1028530 AT3G58710.2 51.695 118 38 2 129 227 34 151 4.62e-35 129
Msa1028530 AT1G29280.1 58.252 103 27 2 135 226 44 141 8.50e-34 125
Msa1028530 AT3G58710.1 53.571 112 33 2 135 227 41 152 1.35e-33 125
Msa1028530 AT2G30590.1 58.333 84 30 1 134 212 288 371 2.31e-27 110
Msa1028530 AT4G24240.1 59.036 83 29 1 134 211 256 338 1.43e-26 108
Msa1028530 AT4G31550.2 44.628 121 56 2 102 211 182 302 2.16e-26 107
Msa1028530 AT4G31550.1 56.098 82 31 1 135 211 222 303 8.22e-26 105
Msa1028530 AT2G24570.1 56.098 82 31 1 135 211 219 300 5.05e-25 103
Msa1028530 AT2G23320.1 55.422 83 32 2 134 211 215 297 5.80e-25 103
Msa1028530 AT5G45260.1 50.000 98 44 3 132 225 1185 1281 1.88e-24 104
Msa1028530 AT3G04670.1 55.422 83 32 1 134 211 237 319 1.42e-23 99.4
Msa1028530 AT5G28650.1 55.422 83 32 1 134 211 237 319 1.54e-23 99.4
Msa1028530 AT5G46350.1 52.778 72 31 2 155 224 184 254 2.93e-19 87.4
Msa1028530 AT4G18170.1 48.780 82 40 2 135 216 154 233 7.75e-19 85.9
Msa1028530 AT2G37260.2 53.846 91 35 4 127 211 234 323 1.46e-18 85.5
Msa1028530 AT2G37260.3 53.846 91 35 4 127 211 236 325 1.55e-18 85.5
Msa1028530 AT2G37260.1 53.846 91 35 4 127 211 316 405 2.37e-18 85.9
Msa1028530 AT4G04450.2 50.685 73 36 0 152 224 196 268 8.91e-18 84.0
Msa1028530 AT1G29860.1 55.738 61 26 1 155 215 137 196 9.07e-18 82.4
Msa1028530 AT4G04450.1 50.685 73 36 0 152 224 290 362 1.29e-17 84.0
Msa1028530 AT2G04880.1 37.795 127 67 4 120 240 272 392 1.57e-17 83.6
Msa1028530 AT2G04880.2 37.795 127 67 4 120 240 248 368 1.86e-17 83.2
Msa1028530 AT1G62300.1 53.968 63 29 0 152 214 310 372 9.59e-17 81.3
Msa1028530 AT4G22070.4 53.125 64 30 0 151 214 294 357 1.05e-16 81.3
Msa1028530 AT4G22070.3 53.125 64 30 0 151 214 294 357 1.05e-16 81.3
Msa1028530 AT4G22070.2 53.125 64 30 0 151 214 294 357 1.05e-16 81.3
Msa1028530 AT4G22070.1 53.125 64 30 0 151 214 294 357 1.05e-16 81.3
Msa1028530 AT1G13960.2 53.968 63 28 1 152 214 254 315 1.23e-16 80.1
Msa1028530 AT1G13960.2 43.939 66 35 2 149 214 71 134 4.98e-11 63.5
Msa1028530 AT1G68150.1 46.053 76 41 0 154 229 235 310 1.31e-16 80.1
Msa1028530 AT1G13960.1 53.968 63 28 1 152 214 407 468 1.66e-16 80.5
Msa1028530 AT1G13960.1 43.939 66 35 2 149 214 224 287 5.02e-11 63.9
Msa1028530 AT5G49520.1 53.333 60 27 1 155 214 222 280 3.22e-16 79.3
Msa1028530 AT3G62340.1 46.988 83 38 2 137 214 96 177 4.53e-16 77.4
Msa1028530 AT2G03340.1 50.000 68 33 1 152 219 413 479 4.71e-16 79.3
Msa1028530 AT5G26170.1 53.968 63 27 2 149 211 109 169 5.52e-16 75.1
Msa1028530 AT4G01720.1 54.098 61 28 0 154 214 239 299 1.67e-15 77.4
Msa1028530 AT2G21900.1 49.180 61 30 1 155 215 110 169 2.06e-15 74.3
Msa1028530 AT5G15130.1 41.111 90 50 1 135 224 211 297 2.08e-15 77.4
Msa1028530 AT5G15130.2 41.111 90 50 1 135 224 169 255 2.46e-15 77.0
Msa1028530 AT2G25000.2 48.333 60 31 0 155 214 104 163 2.94e-15 74.3
Msa1028530 AT2G25000.4 48.333 60 31 0 155 214 104 163 2.94e-15 74.3
Msa1028530 AT1G18860.1 43.750 80 42 1 135 214 223 299 3.79e-15 76.6
Msa1028530 AT4G26640.5 46.835 79 36 2 146 219 192 269 4.66e-15 75.9
Msa1028530 AT4G26640.6 46.835 79 36 2 146 219 192 269 4.66e-15 75.9
Msa1028530 AT4G26640.4 46.835 79 36 2 146 219 192 269 4.66e-15 75.9
Msa1028530 AT4G26640.3 46.835 79 36 2 146 219 192 269 4.66e-15 75.9
Msa1028530 AT2G25000.3 48.333 60 31 0 155 214 126 185 4.99e-15 73.9
Msa1028530 AT4G26640.2 42.308 104 44 4 131 219 343 445 5.28e-15 76.3
Msa1028530 AT4G26640.7 42.308 104 44 4 131 219 303 405 5.69e-15 75.9
Msa1028530 AT4G26640.1 42.308 104 44 4 131 219 271 373 5.85e-15 75.9
Msa1028530 AT2G25000.1 48.333 60 31 0 155 214 147 206 6.85e-15 73.9
Msa1028530 AT4G11070.2 44.792 96 41 3 131 214 80 175 9.91e-15 73.6
Msa1028530 AT4G11070.1 44.792 96 41 3 131 214 112 207 1.15e-14 73.9
Msa1028530 AT1G69310.4 50.794 63 29 2 149 211 143 203 1.17e-14 73.6
Msa1028530 AT1G69310.2 50.794 63 29 2 149 211 143 203 1.17e-14 73.6
Msa1028530 AT1G69310.1 50.794 63 29 2 149 211 143 203 1.17e-14 73.6
Msa1028530 AT1G80840.1 40.278 72 43 0 155 226 147 218 1.19e-14 73.9
Msa1028530 AT5G07100.2 50.000 64 31 1 152 215 139 201 1.28e-14 72.4
Msa1028530 AT5G07100.2 45.161 62 33 1 153 214 23 83 3.99e-11 62.4
Msa1028530 AT5G07100.4 50.000 64 31 1 152 215 139 201 1.28e-14 72.4
Msa1028530 AT5G07100.4 45.161 62 33 1 153 214 23 83 3.99e-11 62.4
Msa1028530 AT5G07100.5 50.000 64 31 1 152 215 139 201 1.28e-14 72.4
Msa1028530 AT5G07100.5 45.161 62 33 1 153 214 23 83 3.99e-11 62.4
Msa1028530 AT5G07100.3 50.000 64 31 1 152 215 139 201 1.28e-14 72.4
Msa1028530 AT5G07100.3 45.161 62 33 1 153 214 23 83 3.99e-11 62.4
Msa1028530 AT2G47260.1 39.286 84 49 2 131 214 152 233 1.30e-14 73.9
Msa1028530 AT2G46400.1 40.171 117 61 4 101 209 46 161 3.27e-14 72.4
Msa1028530 AT3G01080.2 50.794 63 30 1 152 214 342 403 3.31e-14 73.6
Msa1028530 AT3G01080.2 41.429 70 39 2 153 222 204 271 9.08e-11 63.2
Msa1028530 AT3G01080.1 50.794 63 30 1 152 214 304 365 3.41e-14 73.2
Msa1028530 AT3G01080.1 41.429 70 39 2 153 222 166 233 9.85e-11 62.8
Msa1028530 AT5G07100.1 50.000 64 31 1 152 215 232 294 3.55e-14 72.4
Msa1028530 AT5G07100.1 45.161 62 33 1 153 214 116 176 7.67e-11 62.8
Msa1028530 AT4G30935.1 46.970 66 34 1 152 217 329 393 4.83e-14 73.2
Msa1028530 AT1G69810.1 45.833 72 38 1 154 224 203 274 5.87e-14 72.4
Msa1028530 AT1G69810.2 45.833 72 38 1 154 224 145 216 8.23e-14 71.6
Msa1028530 AT2G38470.1 46.479 71 37 1 155 225 363 432 8.36e-14 72.4
Msa1028530 AT4G31800.2 45.000 60 33 0 155 214 112 171 1.04e-13 70.1
Msa1028530 AT4G31800.1 45.000 60 33 0 155 214 177 236 1.27e-13 70.9
Msa1028530 AT2G40740.1 42.708 96 43 4 132 215 144 239 1.97e-13 70.1
Msa1028530 AT5G56270.1 51.667 60 28 1 155 214 488 546 2.02e-13 71.6
Msa1028530 AT1G64000.1 40.260 77 45 1 150 226 110 185 2.23e-13 68.2
Msa1028530 AT2G40740.3 42.708 96 43 4 132 215 153 248 2.84e-13 69.7
Msa1028530 AT4G39410.1 39.394 99 55 3 136 230 203 300 6.20e-13 68.9
Msa1028530 AT2G44745.1 42.045 88 46 3 127 211 116 201 6.33e-13 67.4
Msa1028530 AT4G26440.1 46.154 65 34 1 155 219 373 436 6.72e-13 69.7
Msa1028530 AT4G26440.1 48.387 62 30 2 153 214 177 236 2.99e-11 64.7
Msa1028530 AT5G41570.1 40.260 77 45 1 150 226 94 169 9.34e-13 66.2
Msa1028530 AT4G23810.1 49.206 63 30 1 149 209 153 215 9.45e-13 68.6
Msa1028530 AT2G30250.1 44.000 75 36 2 146 215 315 388 1.44e-12 68.2
Msa1028530 AT1G55600.1 44.262 61 33 1 154 214 307 366 1.50e-12 68.6
Msa1028530 AT5G13080.1 44.262 61 33 1 152 212 65 124 1.56e-12 64.7
Msa1028530 AT3G01970.1 35.802 81 51 1 152 232 63 142 1.71e-12 64.7
Msa1028530 AT3G56400.1 34.021 97 57 3 127 217 94 189 3.82e-12 66.2
Msa1028530 AT2G40750.1 32.609 138 74 4 149 267 146 283 4.42e-12 66.6
Msa1028530 AT2G46130.1 45.161 62 33 1 152 213 28 88 1.16e-11 61.2
Msa1028530 AT5G43290.1 45.455 77 39 2 152 228 112 185 1.47e-11 64.3
Msa1028530 AT5G64810.1 45.763 59 31 1 155 213 111 168 2.50e-11 62.4
Msa1028530 AT5G24110.1 44.444 63 33 1 149 209 108 170 5.43e-11 63.2
Msa1028530 AT3G01080.3 41.429 70 39 2 153 222 204 271 5.87e-11 63.2

Find 86 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTGTGTTTGAGCTAATT+TGG 0.118717 7_1:-61581996 None:intergenic
CTGCTATTGCAATTCCTAAT+TGG 0.183200 7_1:+61582837 Msa1028530:CDS
TGAGGTTGTTGTTTCTCTTT+TGG 0.224899 7_1:-61581627 None:intergenic
TCAGCTTGAGGTGGTGTTAA+TGG 0.224988 7_1:-61582599 None:intergenic
TTTGAGAGTTTAGATGAATT+TGG 0.226929 7_1:+61582794 Msa1028530:CDS
TGTGGCTACTCTTCTATCTT+TGG 0.243238 7_1:+61581797 Msa1028530:CDS
GACGAAGAAGGAGATGAATT+TGG 0.264657 7_1:+61582740 Msa1028530:CDS
GTAGAGAAAATGGAACATTT+TGG 0.279823 7_1:+61582987 Msa1028530:three_prime_UTR
GCACTATTAGCCACCCAATT+AGG 0.288597 7_1:-61582851 None:intergenic
ATATGGGCATGGAGAAAATA+TGG 0.288611 7_1:+61582283 Msa1028530:CDS
TGCTATTGCAATTCCTAATT+GGG 0.291536 7_1:+61582838 Msa1028530:CDS
GCTGCTGCTGCTACAGCTGC+TGG 0.297450 7_1:+61582872 Msa1028530:CDS
CACAAGAAGGTTCAGGTTGC+AGG 0.297705 7_1:-61581778 None:intergenic
AGAGTCTCTCTTCAGATATA+TGG 0.305175 7_1:+61582266 Msa1028530:CDS
AATTTGATTGGATGATCATT+AGG 0.324404 7_1:+61583106 Msa1028530:three_prime_UTR
CTAATCTTGTTAAATTTGAT+TGG 0.328937 7_1:+61583094 Msa1028530:three_prime_UTR
TCTTGTGTTTGAGCTAATTT+GGG 0.330263 7_1:-61581995 None:intergenic
TCTTCACCTCCTGAGGTTGT+AGG 0.351765 7_1:-61582653 None:intergenic
GATCTCCACGCGGTGGTTAG+AGG 0.358175 7_1:+61581695 Msa1028530:CDS
GTCAGAAAGTAGAGAAGAAA+AGG 0.360877 7_1:+61582700 Msa1028530:CDS
CAAGAAAGTGACAAAATTTG+AGG 0.365124 7_1:-61581833 None:intergenic
ATTGCAATAGCAGAAGAAAA+TGG 0.365837 7_1:-61582827 None:intergenic
AGAAAAGGAAGATTCTTTGA+TGG 0.372979 7_1:+61582715 Msa1028530:CDS
CAATGGAAGTGTAGTATAGT+AGG 0.375234 7_1:+61583025 Msa1028530:three_prime_UTR
CTTTACCCATGGAAGAAGAT+TGG 0.393046 7_1:+61581672 Msa1028530:exon
ATGGGTAAAGGGACAAAGTC+TGG 0.395456 7_1:-61581659 None:intergenic
TATAGATGTAGCAGTTCAAA+AGG 0.420572 7_1:+61582446 Msa1028530:CDS
GAGTAGCCACAAGAAGGTTC+AGG 0.422256 7_1:-61581785 None:intergenic
ATGGAGCTTCTAGCTTCAAA+AGG 0.422310 7_1:-61581866 None:intergenic
AATCTTCTTCCATGGGTAAA+GGG 0.436767 7_1:-61581670 None:intergenic
TTTACCCATGGAAGAAGATT+GGG 0.448871 7_1:+61581673 Msa1028530:exon
AATGGAAGTGTAGTATAGTA+GGG 0.449244 7_1:+61583026 Msa1028530:three_prime_UTR
CAATCTTCTTCCATGGGTAA+AGG 0.453148 7_1:-61581671 None:intergenic
TCTTTGTTGGTTTCAGCTTG+AGG 0.464539 7_1:-61582611 None:intergenic
TATGTTACTATGAACATTGT+TGG 0.470318 7_1:-61582509 None:intergenic
TTGATAAGGTAAAGAGAGAG+AGG 0.476070 7_1:-61581578 None:intergenic
GAGTCTCTCTTCAGATATAT+GGG 0.478312 7_1:+61582267 Msa1028530:CDS
AAGTTCATGCAACTCTTCAA+TGG 0.483711 7_1:-61581885 None:intergenic
AACCTCTTCTTCACCTCCTG+AGG 0.488504 7_1:-61582660 None:intergenic
CCCTCTTCTCCTACAACCTC+AGG 0.495834 7_1:+61582644 Msa1028530:CDS
TTATTAATACTTACATACCT+TGG 0.497438 7_1:+61583132 Msa1028530:three_prime_UTR
GAGATCCCAATCTTCTTCCA+TGG 0.498644 7_1:-61581678 None:intergenic
AGCTAATTTGGGTGAAGCAG+AGG 0.511551 7_1:-61581984 None:intergenic
GCTGCTGCTACAGCTGCTGG+TGG 0.522446 7_1:+61582875 Msa1028530:CDS
TGTAGGTGTGGTTGTTGAAG+TGG 0.522871 7_1:-61581726 None:intergenic
GAAGAAGAAACAGAGGATGT+AGG 0.525651 7_1:-61581743 None:intergenic
TGTGATGATCTTGAAAAGAA+AGG 0.526105 7_1:-61581914 None:intergenic
TGATAAGGTAAAGAGAGAGA+GGG 0.527320 7_1:-61581577 None:intergenic
TATAGTAGGGAGGAACTAGT+AGG 0.527921 7_1:+61583039 Msa1028530:three_prime_UTR
ACAAGAAGGTTCAGGTTGCA+GGG 0.532171 7_1:-61581777 None:intergenic
GGAGGAATCTTTGCTGACAA+TGG 0.535261 7_1:+61583008 Msa1028530:three_prime_UTR
TATGGGCATGGAGAAAATAT+GGG 0.537903 7_1:+61582284 Msa1028530:CDS
TCTGAAGAGAGACTCTCAAC+TGG 0.540075 7_1:-61582259 None:intergenic
GATAAGGTAAAGAGAGAGAG+GGG 0.545596 7_1:-61581576 None:intergenic
CCTGAGGTTGTAGGAGAAGA+GGG 0.546404 7_1:-61582644 None:intergenic
TCTTTGATGGATGACGAAGA+AGG 0.562001 7_1:+61582728 Msa1028530:CDS
AGACTTTGTCCCTTTACCCA+TGG 0.563859 7_1:+61581661 Msa1028530:exon
GGAGAAGTTTGCAACGAAAG+AGG 0.564206 7_1:-61581938 None:intergenic
TCCTGAGGTTGTAGGAGAAG+AGG 0.567164 7_1:-61582645 None:intergenic
AGGTGTGGTTGTTGAAGTGG+TGG 0.568830 7_1:-61581723 None:intergenic
CTGCAACCTGAACCTTCTTG+TGG 0.572424 7_1:+61581779 Msa1028530:CDS
TGGAGCTTCTAGCTTCAAAA+GGG 0.573200 7_1:-61581865 None:intergenic
AGAAACAGAGGATGTAGGTG+TGG 0.573812 7_1:-61581738 None:intergenic
AACAGAGGAAGAAGAAACAG+AGG 0.577059 7_1:-61581750 None:intergenic
TAAGAGAATGAAGAAAACAA+AGG 0.578001 7_1:-61581959 None:intergenic
GAAGAAGAGGTTCAAACTCA+AGG 0.585892 7_1:+61582671 Msa1028530:CDS
AGATCCCAATCTTCTTCCAT+GGG 0.595126 7_1:-61581677 None:intergenic
ATAGAAGAGTAGCCACAAGA+AGG 0.596283 7_1:-61581791 None:intergenic
TAAAAGGGTCACCATATCCA+AGG 0.597269 7_1:+61582317 Msa1028530:CDS
TATTGCAATTCCTAATTGGG+TGG 0.603297 7_1:+61582841 Msa1028530:CDS
TCTCTTCAGATATATGGGCA+TGG 0.605027 7_1:+61582272 Msa1028530:CDS
TTGTTGGTTTCAGCTTGAGG+TGG 0.614005 7_1:-61582608 None:intergenic
ACTCTCTTGCTGGTTCAACA+AGG 0.623552 7_1:+61582570 Msa1028530:CDS
ATAGATGTAGCAGTTCAAAA+GGG 0.629154 7_1:+61582447 Msa1028530:CDS
AAAATGACTTTACATTACCA+AGG 0.629743 7_1:-61583149 None:intergenic
CAAGAAGGTTCAGGTTGCAG+GGG 0.629954 7_1:-61581776 None:intergenic
AACCTCAGGAGGTGAAGAAG+AGG 0.630119 7_1:+61582658 Msa1028530:CDS
GGTTGGTGAGAGAACCACCT+TGG 0.648538 7_1:-61582051 None:intergenic
AAAGTCTGGAACAATGTCTG+AGG 0.667047 7_1:-61581645 None:intergenic
AGAAGTAAACATTCACACCA+AGG 0.691967 7_1:+61582034 Msa1028530:CDS
GGAAGTGTAGTATAGTAGGG+AGG 0.697246 7_1:+61583029 Msa1028530:three_prime_UTR
TCTTCTCCTACAACCTCAGG+AGG 0.702219 7_1:+61582647 Msa1028530:CDS
AGTAAACATTCACACCAAGG+TGG 0.736776 7_1:+61582037 Msa1028530:CDS
AGATTGGGATCTCCACGCGG+TGG 0.738113 7_1:+61581688 Msa1028530:CDS
AGCAACCTCTAACCACCGCG+TGG 0.744320 7_1:-61581700 None:intergenic
AGAAGATTGGGATCTCCACG+CGG 0.776413 7_1:+61581685 Msa1028530:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGCTTTATTTTTTCTTTAT+AGG + chr7_1:61582206-61582225 Msa1028530:intron 15.0%
!!! AAAAAATTGAATTTTTACCT+TGG - chr7_1:61582337-61582356 None:intergenic 15.0%
!!! AATTTTGTTTTGTGATTTAT+AGG + chr7_1:61582417-61582436 Msa1028530:intron 15.0%
!!! ATTTTGTTTTGTGATTTATA+GGG + chr7_1:61582418-61582437 Msa1028530:intron 15.0%
!!! TTGCTTTATTTTTTCTTTAT+AGG + chr7_1:61582206-61582225 Msa1028530:intron 15.0%
!!! AAAAAATTGAATTTTTACCT+TGG - chr7_1:61582337-61582356 None:intergenic 15.0%
!!! AATTTTGTTTTGTGATTTAT+AGG + chr7_1:61582417-61582436 Msa1028530:intron 15.0%
!!! ATTTTGTTTTGTGATTTATA+GGG + chr7_1:61582418-61582437 Msa1028530:intron 15.0%
!!! AGACTTGATTTTTATTACAT+GGG - chr7_1:61582147-61582166 None:intergenic 20.0%
!!! AAGACTTGATTTTTATTACA+TGG - chr7_1:61582148-61582167 None:intergenic 20.0%
!!! TTTTGTTTTGTGATTTATAG+GGG + chr7_1:61582419-61582438 Msa1028530:intron 20.0%
!! CTAATCTTGTTAAATTTGAT+TGG + chr7_1:61583094-61583113 Msa1028530:three_prime_UTR 20.0%
!! TTATTAATACTTACATACCT+TGG + chr7_1:61583132-61583151 Msa1028530:three_prime_UTR 20.0%
!!! AGACTTGATTTTTATTACAT+GGG - chr7_1:61582147-61582166 None:intergenic 20.0%
!!! AAGACTTGATTTTTATTACA+TGG - chr7_1:61582148-61582167 None:intergenic 20.0%
!!! TTTTGTTTTGTGATTTATAG+GGG + chr7_1:61582419-61582438 Msa1028530:intron 20.0%
!! CTAATCTTGTTAAATTTGAT+TGG + chr7_1:61583094-61583113 Msa1028530:three_prime_UTR 20.0%
!! TTATTAATACTTACATACCT+TGG + chr7_1:61583132-61583151 Msa1028530:three_prime_UTR 20.0%
! TAAGAGAATGAAGAAAACAA+AGG - chr7_1:61581962-61581981 None:intergenic 25.0%
!! TTTACCTTCTTTTTGATCTT+GGG - chr7_1:61582075-61582094 None:intergenic 25.0%
!! ATTTACCTTCTTTTTGATCT+TGG - chr7_1:61582076-61582095 None:intergenic 25.0%
!! TTGAATTTTTACCTTGGATA+TGG - chr7_1:61582331-61582350 None:intergenic 25.0%
! TATGTTACTATGAACATTGT+TGG - chr7_1:61582512-61582531 None:intergenic 25.0%
! TTTGAGAGTTTAGATGAATT+TGG + chr7_1:61582794-61582813 Msa1028530:CDS 25.0%
!! CATTTTCTCTACAAACAAAA+AGG - chr7_1:61582979-61582998 None:intergenic 25.0%
!!! CTTTTTGTTTGTAGAGAAAA+TGG + chr7_1:61582977-61582996 Msa1028530:three_prime_UTR 25.0%
! AATTTGATTGGATGATCATT+AGG + chr7_1:61583106-61583125 Msa1028530:three_prime_UTR 25.0%
! AAAATGACTTTACATTACCA+AGG - chr7_1:61583152-61583171 None:intergenic 25.0%
!!! TCTTTTGTCAACTGTTATTT+TGG + chr7_1:61583186-61583205 Msa1028530:three_prime_UTR 25.0%
! TAAGAGAATGAAGAAAACAA+AGG - chr7_1:61581962-61581981 None:intergenic 25.0%
!! TTTACCTTCTTTTTGATCTT+GGG - chr7_1:61582075-61582094 None:intergenic 25.0%
!! ATTTACCTTCTTTTTGATCT+TGG - chr7_1:61582076-61582095 None:intergenic 25.0%
!! TTGAATTTTTACCTTGGATA+TGG - chr7_1:61582331-61582350 None:intergenic 25.0%
! TATGTTACTATGAACATTGT+TGG - chr7_1:61582512-61582531 None:intergenic 25.0%
! TTTGAGAGTTTAGATGAATT+TGG + chr7_1:61582794-61582813 Msa1028530:CDS 25.0%
!! CATTTTCTCTACAAACAAAA+AGG - chr7_1:61582979-61582998 None:intergenic 25.0%
!!! CTTTTTGTTTGTAGAGAAAA+TGG + chr7_1:61582977-61582996 Msa1028530:three_prime_UTR 25.0%
! AATTTGATTGGATGATCATT+AGG + chr7_1:61583106-61583125 Msa1028530:three_prime_UTR 25.0%
! AAAATGACTTTACATTACCA+AGG - chr7_1:61583152-61583171 None:intergenic 25.0%
!!! TCTTTTGTCAACTGTTATTT+TGG + chr7_1:61583186-61583205 Msa1028530:three_prime_UTR 25.0%
!! TTTTGGAGAAAGACAAAAGA+AGG - chr7_1:61581613-61581632 None:intergenic 30.0%
CAAGAAAGTGACAAAATTTG+AGG - chr7_1:61581836-61581855 None:intergenic 30.0%
TGTGATGATCTTGAAAAGAA+AGG - chr7_1:61581917-61581936 None:intergenic 30.0%
TCTTGTGTTTGAGCTAATTT+GGG - chr7_1:61581998-61582017 None:intergenic 30.0%
TATGGGCAAAAACCTATAAA+AGG + chr7_1:61582301-61582320 Msa1028530:CDS 30.0%
ATGGGCAAAAACCTATAAAA+GGG + chr7_1:61582302-61582321 Msa1028530:CDS 30.0%
TATAGATGTAGCAGTTCAAA+AGG + chr7_1:61582446-61582465 Msa1028530:CDS 30.0%
ATAGATGTAGCAGTTCAAAA+GGG + chr7_1:61582447-61582466 Msa1028530:CDS 30.0%
AGAAAAGGAAGATTCTTTGA+TGG + chr7_1:61582715-61582734 Msa1028530:CDS 30.0%
ATTGCAATAGCAGAAGAAAA+TGG - chr7_1:61582830-61582849 None:intergenic 30.0%
TGCTATTGCAATTCCTAATT+GGG + chr7_1:61582838-61582857 Msa1028530:CDS 30.0%
!!! GCTTTTTCATTGAAGAGAAT+AGG + chr7_1:61582933-61582952 Msa1028530:three_prime_UTR 30.0%
! GTAGAGAAAATGGAACATTT+TGG + chr7_1:61582987-61583006 Msa1028530:three_prime_UTR 30.0%
! AATGGAAGTGTAGTATAGTA+GGG + chr7_1:61583026-61583045 Msa1028530:three_prime_UTR 30.0%
!! TTTTGGCTAAGATTTTGTTG+AGG + chr7_1:61583203-61583222 Msa1028530:three_prime_UTR 30.0%
!! TTTTGGAGAAAGACAAAAGA+AGG - chr7_1:61581613-61581632 None:intergenic 30.0%
CAAGAAAGTGACAAAATTTG+AGG - chr7_1:61581836-61581855 None:intergenic 30.0%
TGTGATGATCTTGAAAAGAA+AGG - chr7_1:61581917-61581936 None:intergenic 30.0%
TCTTGTGTTTGAGCTAATTT+GGG - chr7_1:61581998-61582017 None:intergenic 30.0%
TATGGGCAAAAACCTATAAA+AGG + chr7_1:61582301-61582320 Msa1028530:CDS 30.0%
ATGGGCAAAAACCTATAAAA+GGG + chr7_1:61582302-61582321 Msa1028530:CDS 30.0%
TATAGATGTAGCAGTTCAAA+AGG + chr7_1:61582446-61582465 Msa1028530:CDS 30.0%
ATAGATGTAGCAGTTCAAAA+GGG + chr7_1:61582447-61582466 Msa1028530:CDS 30.0%
AGAAAAGGAAGATTCTTTGA+TGG + chr7_1:61582715-61582734 Msa1028530:CDS 30.0%
ATTGCAATAGCAGAAGAAAA+TGG - chr7_1:61582830-61582849 None:intergenic 30.0%
TGCTATTGCAATTCCTAATT+GGG + chr7_1:61582838-61582857 Msa1028530:CDS 30.0%
!!! GCTTTTTCATTGAAGAGAAT+AGG + chr7_1:61582933-61582952 Msa1028530:three_prime_UTR 30.0%
! GTAGAGAAAATGGAACATTT+TGG + chr7_1:61582987-61583006 Msa1028530:three_prime_UTR 30.0%
! AATGGAAGTGTAGTATAGTA+GGG + chr7_1:61583026-61583045 Msa1028530:three_prime_UTR 30.0%
!! TTTTGGCTAAGATTTTGTTG+AGG + chr7_1:61583203-61583222 Msa1028530:three_prime_UTR 30.0%
TGATAAGGTAAAGAGAGAGA+GGG - chr7_1:61581580-61581599 None:intergenic 35.0%
TTGATAAGGTAAAGAGAGAG+AGG - chr7_1:61581581-61581600 None:intergenic 35.0%
!!! TGAGGTTGTTGTTTCTCTTT+TGG - chr7_1:61581630-61581649 None:intergenic 35.0%
AATCTTCTTCCATGGGTAAA+GGG - chr7_1:61581673-61581692 None:intergenic 35.0%
TTTACCCATGGAAGAAGATT+GGG + chr7_1:61581673-61581692 Msa1028530:exon 35.0%
AAGTTCATGCAACTCTTCAA+TGG - chr7_1:61581888-61581907 None:intergenic 35.0%
CTCTTGTGTTTGAGCTAATT+TGG - chr7_1:61581999-61582018 None:intergenic 35.0%
AGAAGTAAACATTCACACCA+AGG + chr7_1:61582034-61582053 Msa1028530:CDS 35.0%
AGAGTCTCTCTTCAGATATA+TGG + chr7_1:61582266-61582285 Msa1028530:CDS 35.0%
GAGTCTCTCTTCAGATATAT+GGG + chr7_1:61582267-61582286 Msa1028530:CDS 35.0%
ATATGGGCATGGAGAAAATA+TGG + chr7_1:61582283-61582302 Msa1028530:CDS 35.0%
TATGGGCATGGAGAAAATAT+GGG + chr7_1:61582284-61582303 Msa1028530:CDS 35.0%
GTCAGAAAGTAGAGAAGAAA+AGG + chr7_1:61582700-61582719 Msa1028530:CDS 35.0%
CTGCTATTGCAATTCCTAAT+TGG + chr7_1:61582837-61582856 Msa1028530:CDS 35.0%
TATTGCAATTCCTAATTGGG+TGG + chr7_1:61582841-61582860 Msa1028530:CDS 35.0%
! GAGAAAATGGAACATTTTGG+AGG + chr7_1:61582990-61583009 Msa1028530:three_prime_UTR 35.0%
! CAATGGAAGTGTAGTATAGT+AGG + chr7_1:61583025-61583044 Msa1028530:three_prime_UTR 35.0%
TGATAAGGTAAAGAGAGAGA+GGG - chr7_1:61581580-61581599 None:intergenic 35.0%
TTGATAAGGTAAAGAGAGAG+AGG - chr7_1:61581581-61581600 None:intergenic 35.0%
!!! TGAGGTTGTTGTTTCTCTTT+TGG - chr7_1:61581630-61581649 None:intergenic 35.0%
AATCTTCTTCCATGGGTAAA+GGG - chr7_1:61581673-61581692 None:intergenic 35.0%
TTTACCCATGGAAGAAGATT+GGG + chr7_1:61581673-61581692 Msa1028530:exon 35.0%
AAGTTCATGCAACTCTTCAA+TGG - chr7_1:61581888-61581907 None:intergenic 35.0%
CTCTTGTGTTTGAGCTAATT+TGG - chr7_1:61581999-61582018 None:intergenic 35.0%
AGAAGTAAACATTCACACCA+AGG + chr7_1:61582034-61582053 Msa1028530:CDS 35.0%
AGAGTCTCTCTTCAGATATA+TGG + chr7_1:61582266-61582285 Msa1028530:CDS 35.0%
GAGTCTCTCTTCAGATATAT+GGG + chr7_1:61582267-61582286 Msa1028530:CDS 35.0%
ATATGGGCATGGAGAAAATA+TGG + chr7_1:61582283-61582302 Msa1028530:CDS 35.0%
TATGGGCATGGAGAAAATAT+GGG + chr7_1:61582284-61582303 Msa1028530:CDS 35.0%
GTCAGAAAGTAGAGAAGAAA+AGG + chr7_1:61582700-61582719 Msa1028530:CDS 35.0%
CTGCTATTGCAATTCCTAAT+TGG + chr7_1:61582837-61582856 Msa1028530:CDS 35.0%
TATTGCAATTCCTAATTGGG+TGG + chr7_1:61582841-61582860 Msa1028530:CDS 35.0%
! GAGAAAATGGAACATTTTGG+AGG + chr7_1:61582990-61583009 Msa1028530:three_prime_UTR 35.0%
! CAATGGAAGTGTAGTATAGT+AGG + chr7_1:61583025-61583044 Msa1028530:three_prime_UTR 35.0%
GATAAGGTAAAGAGAGAGAG+GGG - chr7_1:61581579-61581598 None:intergenic 40.0%
! AAAGTCTGGAACAATGTCTG+AGG - chr7_1:61581648-61581667 None:intergenic 40.0%
CAATCTTCTTCCATGGGTAA+AGG - chr7_1:61581674-61581693 None:intergenic 40.0%
CTTTACCCATGGAAGAAGAT+TGG + chr7_1:61581672-61581691 Msa1028530:exon 40.0%
AGATCCCAATCTTCTTCCAT+GGG - chr7_1:61581680-61581699 None:intergenic 40.0%
GAAGAAGAAACAGAGGATGT+AGG - chr7_1:61581746-61581765 None:intergenic 40.0%
AACAGAGGAAGAAGAAACAG+AGG - chr7_1:61581753-61581772 None:intergenic 40.0%
ATAGAAGAGTAGCCACAAGA+AGG - chr7_1:61581794-61581813 None:intergenic 40.0%
TGTGGCTACTCTTCTATCTT+TGG + chr7_1:61581797-61581816 Msa1028530:CDS 40.0%
!! TGGAGCTTCTAGCTTCAAAA+GGG - chr7_1:61581868-61581887 None:intergenic 40.0%
!! ATGGAGCTTCTAGCTTCAAA+AGG - chr7_1:61581869-61581888 None:intergenic 40.0%
AGTAAACATTCACACCAAGG+TGG + chr7_1:61582037-61582056 Msa1028530:CDS 40.0%
! CCTTCTTTTTGATCTTGGGT+TGG - chr7_1:61582071-61582090 None:intergenic 40.0%
CCAACCCAAGATCAAAAAGA+AGG + chr7_1:61582068-61582087 Msa1028530:CDS 40.0%
TCTCTTCAGATATATGGGCA+TGG + chr7_1:61582272-61582291 Msa1028530:CDS 40.0%
! GGATATGGTGACCCTTTTAT+AGG - chr7_1:61582316-61582335 None:intergenic 40.0%
TAAAAGGGTCACCATATCCA+AGG + chr7_1:61582317-61582336 Msa1028530:CDS 40.0%
! GCAAGAGAGTTTTTGTGTGT+AGG - chr7_1:61582560-61582579 None:intergenic 40.0%
ACACACAAAAACTCTCTTGC+TGG + chr7_1:61582560-61582579 Msa1028530:CDS 40.0%
!! TCTTTGTTGGTTTCAGCTTG+AGG - chr7_1:61582614-61582633 None:intergenic 40.0%
!! GGGTTTTGTAGGATCTTTGT+TGG - chr7_1:61582627-61582646 None:intergenic 40.0%
GAAGAAGAGGTTCAAACTCA+AGG + chr7_1:61582671-61582690 Msa1028530:CDS 40.0%
! TCTTTGATGGATGACGAAGA+AGG + chr7_1:61582728-61582747 Msa1028530:CDS 40.0%
GACGAAGAAGGAGATGAATT+TGG + chr7_1:61582740-61582759 Msa1028530:CDS 40.0%
TATAGTAGGGAGGAACTAGT+AGG + chr7_1:61583039-61583058 Msa1028530:three_prime_UTR 40.0%
GATAAGGTAAAGAGAGAGAG+GGG - chr7_1:61581579-61581598 None:intergenic 40.0%
! AAAGTCTGGAACAATGTCTG+AGG - chr7_1:61581648-61581667 None:intergenic 40.0%
CAATCTTCTTCCATGGGTAA+AGG - chr7_1:61581674-61581693 None:intergenic 40.0%
CTTTACCCATGGAAGAAGAT+TGG + chr7_1:61581672-61581691 Msa1028530:exon 40.0%
AGATCCCAATCTTCTTCCAT+GGG - chr7_1:61581680-61581699 None:intergenic 40.0%
GAAGAAGAAACAGAGGATGT+AGG - chr7_1:61581746-61581765 None:intergenic 40.0%
AACAGAGGAAGAAGAAACAG+AGG - chr7_1:61581753-61581772 None:intergenic 40.0%
ATAGAAGAGTAGCCACAAGA+AGG - chr7_1:61581794-61581813 None:intergenic 40.0%
TGTGGCTACTCTTCTATCTT+TGG + chr7_1:61581797-61581816 Msa1028530:CDS 40.0%
!! TGGAGCTTCTAGCTTCAAAA+GGG - chr7_1:61581868-61581887 None:intergenic 40.0%
!! ATGGAGCTTCTAGCTTCAAA+AGG - chr7_1:61581869-61581888 None:intergenic 40.0%
AGTAAACATTCACACCAAGG+TGG + chr7_1:61582037-61582056 Msa1028530:CDS 40.0%
! CCTTCTTTTTGATCTTGGGT+TGG - chr7_1:61582071-61582090 None:intergenic 40.0%
CCAACCCAAGATCAAAAAGA+AGG + chr7_1:61582068-61582087 Msa1028530:CDS 40.0%
TCTCTTCAGATATATGGGCA+TGG + chr7_1:61582272-61582291 Msa1028530:CDS 40.0%
! GGATATGGTGACCCTTTTAT+AGG - chr7_1:61582316-61582335 None:intergenic 40.0%
TAAAAGGGTCACCATATCCA+AGG + chr7_1:61582317-61582336 Msa1028530:CDS 40.0%
! GCAAGAGAGTTTTTGTGTGT+AGG - chr7_1:61582560-61582579 None:intergenic 40.0%
ACACACAAAAACTCTCTTGC+TGG + chr7_1:61582560-61582579 Msa1028530:CDS 40.0%
!! TCTTTGTTGGTTTCAGCTTG+AGG - chr7_1:61582614-61582633 None:intergenic 40.0%
!! GGGTTTTGTAGGATCTTTGT+TGG - chr7_1:61582627-61582646 None:intergenic 40.0%
GAAGAAGAGGTTCAAACTCA+AGG + chr7_1:61582671-61582690 Msa1028530:CDS 40.0%
! TCTTTGATGGATGACGAAGA+AGG + chr7_1:61582728-61582747 Msa1028530:CDS 40.0%
GACGAAGAAGGAGATGAATT+TGG + chr7_1:61582740-61582759 Msa1028530:CDS 40.0%
TATAGTAGGGAGGAACTAGT+AGG + chr7_1:61583039-61583058 Msa1028530:three_prime_UTR 40.0%
!!! GAAGGCGCTGACTTTTGATA+AGG - chr7_1:61581595-61581614 None:intergenic 45.0%
ATGGGTAAAGGGACAAAGTC+TGG - chr7_1:61581662-61581681 None:intergenic 45.0%
AGACTTTGTCCCTTTACCCA+TGG + chr7_1:61581661-61581680 Msa1028530:exon 45.0%
GAGATCCCAATCTTCTTCCA+TGG - chr7_1:61581681-61581700 None:intergenic 45.0%
TGTAGGTGTGGTTGTTGAAG+TGG - chr7_1:61581729-61581748 None:intergenic 45.0%
AGAAACAGAGGATGTAGGTG+TGG - chr7_1:61581741-61581760 None:intergenic 45.0%
!! ACAAGAAGGTTCAGGTTGCA+GGG - chr7_1:61581780-61581799 None:intergenic 45.0%
GGAGAAGTTTGCAACGAAAG+AGG - chr7_1:61581941-61581960 None:intergenic 45.0%
AGCTAATTTGGGTGAAGCAG+AGG - chr7_1:61581987-61582006 None:intergenic 45.0%
TCTGAAGAGAGACTCTCAAC+TGG - chr7_1:61582262-61582281 None:intergenic 45.0%
! GAGTTTTTGTGTGTAGGAGC+AGG - chr7_1:61582554-61582573 None:intergenic 45.0%
!! ACTCTCTTGCTGGTTCAACA+AGG + chr7_1:61582570-61582589 Msa1028530:CDS 45.0%
! TCAGCTTGAGGTGGTGTTAA+TGG - chr7_1:61582602-61582621 None:intergenic 45.0%
!! TTGTTGGTTTCAGCTTGAGG+TGG - chr7_1:61582611-61582630 None:intergenic 45.0%
!! GTAGGAGAAGAGGGTTTTGT+AGG - chr7_1:61582638-61582657 None:intergenic 45.0%
GCACTATTAGCCACCCAATT+AGG - chr7_1:61582854-61582873 None:intergenic 45.0%
GGAGGAATCTTTGCTGACAA+TGG + chr7_1:61583008-61583027 Msa1028530:three_prime_UTR 45.0%
! GGAAGTGTAGTATAGTAGGG+AGG + chr7_1:61583029-61583048 Msa1028530:three_prime_UTR 45.0%
!!! GAAGGCGCTGACTTTTGATA+AGG - chr7_1:61581595-61581614 None:intergenic 45.0%
ATGGGTAAAGGGACAAAGTC+TGG - chr7_1:61581662-61581681 None:intergenic 45.0%
AGACTTTGTCCCTTTACCCA+TGG + chr7_1:61581661-61581680 Msa1028530:exon 45.0%
GAGATCCCAATCTTCTTCCA+TGG - chr7_1:61581681-61581700 None:intergenic 45.0%
TGTAGGTGTGGTTGTTGAAG+TGG - chr7_1:61581729-61581748 None:intergenic 45.0%
AGAAACAGAGGATGTAGGTG+TGG - chr7_1:61581741-61581760 None:intergenic 45.0%
!! ACAAGAAGGTTCAGGTTGCA+GGG - chr7_1:61581780-61581799 None:intergenic 45.0%
GGAGAAGTTTGCAACGAAAG+AGG - chr7_1:61581941-61581960 None:intergenic 45.0%
AGCTAATTTGGGTGAAGCAG+AGG - chr7_1:61581987-61582006 None:intergenic 45.0%
TCTGAAGAGAGACTCTCAAC+TGG - chr7_1:61582262-61582281 None:intergenic 45.0%
! GAGTTTTTGTGTGTAGGAGC+AGG - chr7_1:61582554-61582573 None:intergenic 45.0%
!! ACTCTCTTGCTGGTTCAACA+AGG + chr7_1:61582570-61582589 Msa1028530:CDS 45.0%
! TCAGCTTGAGGTGGTGTTAA+TGG - chr7_1:61582602-61582621 None:intergenic 45.0%
!! TTGTTGGTTTCAGCTTGAGG+TGG - chr7_1:61582611-61582630 None:intergenic 45.0%
!! GTAGGAGAAGAGGGTTTTGT+AGG - chr7_1:61582638-61582657 None:intergenic 45.0%
GCACTATTAGCCACCCAATT+AGG - chr7_1:61582854-61582873 None:intergenic 45.0%
GGAGGAATCTTTGCTGACAA+TGG + chr7_1:61583008-61583027 Msa1028530:three_prime_UTR 45.0%
! GGAAGTGTAGTATAGTAGGG+AGG + chr7_1:61583029-61583048 Msa1028530:three_prime_UTR 45.0%
AGAAGATTGGGATCTCCACG+CGG + chr7_1:61581685-61581704 Msa1028530:CDS 50.0%
AGGTGTGGTTGTTGAAGTGG+TGG - chr7_1:61581726-61581745 None:intergenic 50.0%
AGGTTGCAGGGGAAAAACAG+AGG - chr7_1:61581768-61581787 None:intergenic 50.0%
!! CAAGAAGGTTCAGGTTGCAG+GGG - chr7_1:61581779-61581798 None:intergenic 50.0%
!! CACAAGAAGGTTCAGGTTGC+AGG - chr7_1:61581781-61581800 None:intergenic 50.0%
CTGCAACCTGAACCTTCTTG+TGG + chr7_1:61581779-61581798 Msa1028530:CDS 50.0%
GAGTAGCCACAAGAAGGTTC+AGG - chr7_1:61581788-61581807 None:intergenic 50.0%
CCTGAGGTTGTAGGAGAAGA+GGG - chr7_1:61582647-61582666 None:intergenic 50.0%
TCCTGAGGTTGTAGGAGAAG+AGG - chr7_1:61582648-61582667 None:intergenic 50.0%
TCTTCTCCTACAACCTCAGG+AGG + chr7_1:61582647-61582666 Msa1028530:CDS 50.0%
TCTTCACCTCCTGAGGTTGT+AGG - chr7_1:61582656-61582675 None:intergenic 50.0%
AACCTCAGGAGGTGAAGAAG+AGG + chr7_1:61582658-61582677 Msa1028530:CDS 50.0%
AACCTCTTCTTCACCTCCTG+AGG - chr7_1:61582663-61582682 None:intergenic 50.0%
AGAAGATTGGGATCTCCACG+CGG + chr7_1:61581685-61581704 Msa1028530:CDS 50.0%
AGGTGTGGTTGTTGAAGTGG+TGG - chr7_1:61581726-61581745 None:intergenic 50.0%
AGGTTGCAGGGGAAAAACAG+AGG - chr7_1:61581768-61581787 None:intergenic 50.0%
!! CAAGAAGGTTCAGGTTGCAG+GGG - chr7_1:61581779-61581798 None:intergenic 50.0%
!! CACAAGAAGGTTCAGGTTGC+AGG - chr7_1:61581781-61581800 None:intergenic 50.0%
CTGCAACCTGAACCTTCTTG+TGG + chr7_1:61581779-61581798 Msa1028530:CDS 50.0%
GAGTAGCCACAAGAAGGTTC+AGG - chr7_1:61581788-61581807 None:intergenic 50.0%
CCTGAGGTTGTAGGAGAAGA+GGG - chr7_1:61582647-61582666 None:intergenic 50.0%
TCCTGAGGTTGTAGGAGAAG+AGG - chr7_1:61582648-61582667 None:intergenic 50.0%
TCTTCTCCTACAACCTCAGG+AGG + chr7_1:61582647-61582666 Msa1028530:CDS 50.0%
TCTTCACCTCCTGAGGTTGT+AGG - chr7_1:61582656-61582675 None:intergenic 50.0%
AACCTCAGGAGGTGAAGAAG+AGG + chr7_1:61582658-61582677 Msa1028530:CDS 50.0%
AACCTCTTCTTCACCTCCTG+AGG - chr7_1:61582663-61582682 None:intergenic 50.0%
!! GGTTGGTGAGAGAACCACCT+TGG - chr7_1:61582054-61582073 None:intergenic 55.0%
CCCTCTTCTCCTACAACCTC+AGG + chr7_1:61582644-61582663 Msa1028530:CDS 55.0%
!! GGTTGGTGAGAGAACCACCT+TGG - chr7_1:61582054-61582073 None:intergenic 55.0%
CCCTCTTCTCCTACAACCTC+AGG + chr7_1:61582644-61582663 Msa1028530:CDS 55.0%
AGATTGGGATCTCCACGCGG+TGG + chr7_1:61581688-61581707 Msa1028530:CDS 60.0%
GATCTCCACGCGGTGGTTAG+AGG + chr7_1:61581695-61581714 Msa1028530:CDS 60.0%
AGCAACCTCTAACCACCGCG+TGG - chr7_1:61581703-61581722 None:intergenic 60.0%
AGATTGGGATCTCCACGCGG+TGG + chr7_1:61581688-61581707 Msa1028530:CDS 60.0%
GATCTCCACGCGGTGGTTAG+AGG + chr7_1:61581695-61581714 Msa1028530:CDS 60.0%
AGCAACCTCTAACCACCGCG+TGG - chr7_1:61581703-61581722 None:intergenic 60.0%
GCTGCTGCTGCTACAGCTGC+TGG + chr7_1:61582872-61582891 Msa1028530:CDS 65.0%
GCTGCTGCTACAGCTGCTGG+TGG + chr7_1:61582875-61582894 Msa1028530:CDS 65.0%
GCTGCTGCTGCTACAGCTGC+TGG + chr7_1:61582872-61582891 Msa1028530:CDS 65.0%
GCTGCTGCTACAGCTGCTGG+TGG + chr7_1:61582875-61582894 Msa1028530:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 61581576 61583242 61581576 ID=Msa1028530;Name=Msa1028530
chr7_1 mRNA 61581576 61583242 61581576 ID=Msa1028530-mRNA-1;Parent=Msa1028530;Name=Msa1028530-mRNA-1;_AED=0.04;_eAED=0.04;_QI=104|1|1|1|1|1|3|338|328
chr7_1 exon 61581576 61582089 61581576 ID=Msa1028530-mRNA-1:exon:12948;Parent=Msa1028530-mRNA-1
chr7_1 exon 61582228 61582338 61582228 ID=Msa1028530-mRNA-1:exon:12949;Parent=Msa1028530-mRNA-1
chr7_1 exon 61582439 61583242 61582439 ID=Msa1028530-mRNA-1:exon:12950;Parent=Msa1028530-mRNA-1
chr7_1 five_prime_UTR 61581576 61581679 61581576 ID=Msa1028530-mRNA-1:five_prime_utr;Parent=Msa1028530-mRNA-1
chr7_1 CDS 61581680 61582089 61581680 ID=Msa1028530-mRNA-1:cds;Parent=Msa1028530-mRNA-1
chr7_1 CDS 61582228 61582338 61582228 ID=Msa1028530-mRNA-1:cds;Parent=Msa1028530-mRNA-1
chr7_1 CDS 61582439 61582904 61582439 ID=Msa1028530-mRNA-1:cds;Parent=Msa1028530-mRNA-1
chr7_1 three_prime_UTR 61582905 61583242 61582905 ID=Msa1028530-mRNA-1:three_prime_utr;Parent=Msa1028530-mRNA-1
Gene Sequence

>Msa1028530

ATGGAAGAAGATTGGGATCTCCACGCGGTGGTTAGAGGTTGCTCCACCACTTCAACAACCACACCTACATCCTCTGTTTCTTCTTCCTCTGTTTTTCCCCTGCAACCTGAACCTTCTTGTGGCTACTCTTCTATCTTTGGTAGTGAACAAAAACCTCAAATTTTGTCACTTTCTTGTTCTACACACCCTTTTGAAGCTAGAAGCTCCATTGAAGAGTTGCATGAACTTTGCAAGCCTTTCTTTTCAAGATCATCACAGCCTCTTTCGTTGCAAACTTCTCCTTTGTTTTCTTCATTCTCTTATTCCTCTGCTTCACCCAAATTAGCTCAAACACAAGAGAAACAACAACTTCAAAGAAGTAAACATTCACACCAAGGTGGTTCTCTCACCAACCCAAGATCAAAAAGAAGGAAAAATCAACTTAAGAAAGTTTGTCAAGTACCAGTTGAGAGTCTCTCTTCAGATATATGGGCATGGAGAAAATATGGGCAAAAACCTATAAAAGGGTCACCATATCCAAGGGGCTATTATAGATGTAGCAGTTCAAAAGGGTGTTTAGCAAGAAAACAAGTTGAAAGAAACAGAACAGATCCAACAATGTTCATAGTAACATATACATGTGAACACAATCATCCTGCTCCTACACACAAAAACTCTCTTGCTGGTTCAACAAGGCAGAAGCCATTAACACCACCTCAAGCTGAAACCAACAAAGATCCTACAAAACCCTCTTCTCCTACAACCTCAGGAGGTGAAGAAGAGGTTCAAACTCAAGGAGAAAAGTCAGAAAGTAGAGAAGAAAAGGAAGATTCTTTGATGGATGACGAAGAAGGAGATGAATTTGGTTTATCTGATGTTGTTTTAAGTGATGATTTCTTTGAGAGTTTAGATGAATTTGGTTTCACAGATCCATTTTCTTCTGCTATTGCAATTCCTAATTGGGTGGCTAATAGTGCTGCTGCTGCTACAGCTGCTGGTGGTAGCTGA
Protein sequence

>Msa1028530

MEEDWDLHAVVRGCSTTSTTTPTSSVSSSSVFPLQPEPSCGYSSIFGSEQKPQILSLSCSTHPFEARSSIEELHELCKPFFSRSSQPLSLQTSPLFSSFSYSSASPKLAQTQEKQQLQRSKHSHQGGSLTNPRSKRRKNQLKKVCQVPVESLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRTDPTMFIVTYTCEHNHPAPTHKNSLAGSTRQKPLTPPQAETNKDPTKPSSPTTSGGEEEVQTQGEKSESREEKEDSLMDDEEGDEFGLSDVVLSDDFFESLDEFGFTDPFSSAIAIPNWVANSAAAATAAGGS*