AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1067580

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1067580 MtrunA17_Chr7g0248691 96.037 328 13 0 1 328 1 328 0.0 647
Msa1067580 MtrunA17_Chr8g0348311 53.687 339 124 6 1 312 1 333 2.57e-90 273
Msa1067580 MtrunA17_Chr2g0293481 49.000 200 72 6 135 306 238 435 9.03e-49 170
Msa1067580 MtrunA17_Chr1g0202461 66.667 111 35 2 132 240 238 348 1.88e-44 156
Msa1067580 MtrunA17_Chr8g0387501 40.517 232 96 7 4 229 9 204 2.24e-40 142
Msa1067580 MtrunA17_Chr2g0284321 60.440 91 30 1 134 218 9 99 1.03e-33 123
Msa1067580 MtrunA17_Chr7g0270051 49.635 137 53 3 134 261 24 153 2.29e-33 124
Msa1067580 MtrunA17_Chr8g0379461 49.587 121 40 2 135 243 45 156 4.13e-32 120
Msa1067580 MtrunA17_Chr2g0319961 58.947 95 28 1 135 218 50 144 1.55e-31 119
Msa1067580 MtrunA17_Chr1g0147881 62.195 82 26 2 135 211 238 319 5.22e-29 114
Msa1067580 MtrunA17_Chr4g0071521 48.780 123 42 3 102 211 188 302 4.27e-28 111
Msa1067580 MtrunA17_Chr5g0401821 60.241 83 28 1 134 211 174 256 1.79e-27 108
Msa1067580 MtrunA17_Chr4g0053281 60.976 82 27 2 135 211 242 323 1.56e-26 107
Msa1067580 MtrunA17_Chr2g0289181 51.136 88 42 1 141 227 1 88 5.63e-25 100
Msa1067580 MtrunA17_Chr1g0184691 57.500 80 29 1 137 211 271 350 2.77e-24 101
Msa1067580 MtrunA17_Chr3g0139021 43.478 115 53 4 117 219 266 380 1.67e-23 99.8
Msa1067580 MtrunA17_Chr7g0228941 49.367 79 35 1 138 211 31 109 2.10e-22 90.9
Msa1067580 MtrunA17_Chr4g0051881 56.522 69 26 2 155 223 179 243 6.37e-19 86.3
Msa1067580 MtrunA17_Chr7g0270831 52.055 73 35 0 152 224 214 286 2.81e-18 85.1
Msa1067580 MtrunA17_Chr7g0218081 43.564 101 55 2 132 231 387 486 3.50e-18 85.1
Msa1067580 MtrunA17_Chr7g0218081 30.496 141 80 5 85 214 153 286 2.31e-11 64.7
Msa1067580 MtrunA17_Chr7g0270191 48.148 81 39 2 155 235 146 223 3.67e-18 83.2
Msa1067580 MtrunA17_Chr1g0194481 41.176 102 49 4 130 222 127 226 4.61e-18 83.6
Msa1067580 MtrunA17_Chr5g0418191 42.342 111 60 3 110 217 273 382 5.74e-18 84.3
Msa1067580 MtrunA17_Chr5g0418191 32.653 147 71 5 87 214 72 209 7.84e-11 62.8
Msa1067580 MtrunA17_Chr7g0263531 45.918 98 36 3 133 214 324 420 1.38e-17 83.2
Msa1067580 MtrunA17_Chr7g0263531 45.833 72 37 2 153 224 188 257 7.91e-13 68.9
Msa1067580 MtrunA17_Chr2g0288871 54.688 64 29 0 151 214 302 365 2.21e-17 82.8
Msa1067580 MtrunA17_Chr5g0443131 55.000 60 26 1 155 214 158 216 2.24e-17 81.3
Msa1067580 MtrunA17_Chr3g0126391 31.720 186 108 5 155 328 134 312 3.68e-17 81.3
Msa1067580 MtrunA17_Chr4g0042831 46.154 91 46 3 129 217 251 340 7.94e-17 80.5
Msa1067580 MtrunA17_Chr4g0042831 41.333 75 43 1 140 214 131 204 5.40e-12 66.2
Msa1067580 MtrunA17_Chr3g0101131 42.157 102 45 3 131 219 379 479 1.05e-16 80.9
Msa1067580 MtrunA17_Chr4g0025051 48.000 75 39 0 150 224 331 405 1.66e-16 80.5
Msa1067580 MtrunA17_Chr4g0051181 56.140 57 25 0 159 215 248 304 7.59e-16 78.2
Msa1067580 MtrunA17_Chr4g0025061 45.333 75 41 0 150 224 356 430 7.62e-16 78.2
Msa1067580 MtrunA17_Chr5g0445311 38.095 105 48 2 131 219 325 428 8.74e-16 78.2
Msa1067580 MtrunA17_Chr3g0099641 44.595 74 41 0 151 224 248 321 8.91e-16 77.8
Msa1067580 MtrunA17_Chr7g0216891 40.659 91 51 1 134 224 202 289 1.20e-15 77.8
Msa1067580 MtrunA17_Chr5g0418781 56.140 57 24 1 155 211 125 180 1.80e-15 75.5
Msa1067580 MtrunA17_Chr4g0075201 50.794 63 31 0 152 214 265 327 2.14e-15 76.6
Msa1067580 MtrunA17_Chr7g0238921 36.000 150 82 5 152 300 122 258 2.33e-15 75.5
Msa1067580 MtrunA17_Chr4g0001361 43.243 74 42 0 152 225 160 233 2.44e-15 75.5
Msa1067580 MtrunA17_Chr7g0275531 42.000 100 45 3 131 217 88 187 3.04e-15 75.5
Msa1067580 MtrunA17_Chr8g0387981 42.353 85 41 2 133 209 105 189 3.92e-15 75.5
Msa1067580 MtrunA17_Chr7g0249311 36.207 116 66 4 105 219 348 456 4.93e-15 75.9
Msa1067580 MtrunA17_Chr7g0249311 48.387 62 30 2 153 214 178 237 3.34e-11 64.3
Msa1067580 MtrunA17_Chr2g0302391 50.000 70 35 0 155 224 212 281 4.99e-15 75.5
Msa1067580 MtrunA17_Chr2g0322391 42.683 82 35 1 133 214 340 409 5.38e-15 75.9
Msa1067580 MtrunA17_Chr2g0333851 43.077 65 37 0 152 216 167 231 8.75e-15 73.9
Msa1067580 MtrunA17_Chr2g0294231 48.333 60 30 1 155 214 204 262 1.28e-14 73.9
Msa1067580 MtrunA17_Chr3g0079691 49.231 65 32 1 155 219 496 559 3.22e-14 73.6
Msa1067580 MtrunA17_Chr3g0079691 50.000 62 29 2 153 214 279 338 6.17e-12 66.6
Msa1067580 MtrunA17_Chr6g0485431 48.148 81 37 4 142 218 141 220 4.08e-14 72.4
Msa1067580 MtrunA17_Chr3g0129321 46.032 63 33 1 152 214 116 177 5.14e-14 70.1
Msa1067580 MtrunA17_Chr4g0060271 41.975 81 44 1 134 214 238 315 5.92e-14 72.8
Msa1067580 MtrunA17_Chr8g0347251 28.358 201 122 5 114 303 96 285 6.27e-14 71.6
Msa1067580 MtrunA17_Chr4g0074001 48.485 66 33 1 152 217 357 421 6.32e-14 72.4
Msa1067580 MtrunA17_Chr5g0447701 43.373 83 44 2 152 234 250 329 7.54e-14 71.6
Msa1067580 MtrunA17_Chr8g0383251 47.619 63 32 1 152 214 106 167 7.85e-14 68.9
Msa1067580 MtrunA17_Chr4g0004911 51.667 60 28 1 155 214 337 395 9.90e-14 71.6
Msa1067580 MtrunA17_Chr4g0004911 45.000 60 32 1 155 214 185 243 7.23e-11 63.2
Msa1067580 MtrunA17_Chr1g0150801 49.180 61 30 1 152 212 100 159 1.03e-13 68.2
Msa1067580 MtrunA17_Chr1g0150281 47.368 57 30 0 155 211 141 197 1.11e-13 70.5
Msa1067580 MtrunA17_Chr7g0249301 49.180 61 30 1 155 215 293 352 1.71e-13 70.5
Msa1067580 MtrunA17_Chr7g0249301 49.180 61 29 2 155 215 63 121 4.33e-12 66.2
Msa1067580 MtrunA17_Chr7g0243891 41.860 86 40 2 155 231 375 459 1.87e-13 70.9
Msa1067580 MtrunA17_Chr4g0068541 44.262 61 33 1 155 215 209 268 1.96e-13 70.5
Msa1067580 MtrunA17_Chr3g0136961 40.789 76 38 1 143 211 120 195 6.80e-13 68.2
Msa1067580 MtrunA17_Chr4g0024391 42.667 75 43 0 150 224 225 299 7.32e-13 68.9
Msa1067580 MtrunA17_Chr3g0106491 43.590 78 42 2 152 229 363 438 1.12e-12 68.6
Msa1067580 MtrunA17_Chr7g0224801 43.548 62 34 1 152 213 91 151 1.62e-12 65.1
Msa1067580 MtrunA17_Chr1g0189391 50.794 63 29 2 150 211 93 154 1.83e-12 67.4
Msa1067580 MtrunA17_Chr5g0432161 45.588 68 36 1 152 219 419 485 2.17e-12 67.8
Msa1067580 MtrunA17_Chr8g0383351 44.118 68 31 2 150 211 150 216 3.49e-12 65.1
Msa1067580 MtrunA17_Chr3g0129361 46.053 76 37 3 155 230 145 216 4.07e-12 64.7
Msa1067580 MtrunA17_Chr8g0335811 41.573 89 47 3 126 211 124 210 5.43e-12 64.7
Msa1067580 MtrunA17_Chr1g0150271 40.625 64 38 0 152 215 99 162 1.39e-11 63.9
Msa1067580 MtrunA17_Chr1g0188941 45.902 61 32 1 155 215 52 111 5.10e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1067580 AT4G01250.1 46.974 347 112 13 1 325 1 297 7.37e-80 245
Msa1067580 AT5G52830.1 39.604 303 127 6 3 267 4 288 2.96e-44 155
Msa1067580 AT4G23550.1 42.520 254 114 6 3 249 8 236 1.10e-41 147
Msa1067580 AT2G34830.1 68.367 98 21 1 135 222 186 283 4.52e-41 148
Msa1067580 AT2G34830.2 68.367 98 21 1 135 222 195 292 5.65e-41 148
Msa1067580 AT1G30650.1 62.617 107 27 2 129 222 179 285 1.39e-39 144
Msa1067580 AT5G45050.2 58.879 107 43 1 117 222 1114 1220 3.45e-36 139
Msa1067580 AT5G45050.1 58.879 107 43 1 117 222 1142 1248 3.92e-36 139
Msa1067580 AT5G45050.4 58.333 108 44 1 116 222 1002 1109 4.80e-36 138
Msa1067580 AT3G58710.2 51.695 118 38 2 129 227 34 151 4.62e-35 129
Msa1067580 AT1G29280.1 58.252 103 27 2 135 226 44 141 8.50e-34 125
Msa1067580 AT3G58710.1 53.571 112 33 2 135 227 41 152 1.35e-33 125
Msa1067580 AT2G30590.1 58.333 84 30 1 134 212 288 371 2.31e-27 110
Msa1067580 AT4G24240.1 59.036 83 29 1 134 211 256 338 1.43e-26 108
Msa1067580 AT4G31550.2 44.628 121 56 2 102 211 182 302 2.16e-26 107
Msa1067580 AT4G31550.1 56.098 82 31 1 135 211 222 303 8.22e-26 105
Msa1067580 AT2G24570.1 56.098 82 31 1 135 211 219 300 5.05e-25 103
Msa1067580 AT2G23320.1 55.422 83 32 2 134 211 215 297 5.80e-25 103
Msa1067580 AT5G45260.1 50.000 98 44 3 132 225 1185 1281 1.88e-24 104
Msa1067580 AT3G04670.1 55.422 83 32 1 134 211 237 319 1.42e-23 99.4
Msa1067580 AT5G28650.1 55.422 83 32 1 134 211 237 319 1.54e-23 99.4
Msa1067580 AT5G46350.1 52.778 72 31 2 155 224 184 254 2.93e-19 87.4
Msa1067580 AT4G18170.1 48.780 82 40 2 135 216 154 233 7.75e-19 85.9
Msa1067580 AT2G37260.2 53.846 91 35 4 127 211 234 323 1.46e-18 85.5
Msa1067580 AT2G37260.3 53.846 91 35 4 127 211 236 325 1.55e-18 85.5
Msa1067580 AT2G37260.1 53.846 91 35 4 127 211 316 405 2.37e-18 85.9
Msa1067580 AT4G04450.2 50.685 73 36 0 152 224 196 268 8.91e-18 84.0
Msa1067580 AT1G29860.1 55.738 61 26 1 155 215 137 196 9.07e-18 82.4
Msa1067580 AT4G04450.1 50.685 73 36 0 152 224 290 362 1.29e-17 84.0
Msa1067580 AT2G04880.1 37.795 127 67 4 120 240 272 392 1.57e-17 83.6
Msa1067580 AT2G04880.2 37.795 127 67 4 120 240 248 368 1.86e-17 83.2
Msa1067580 AT1G62300.1 53.968 63 29 0 152 214 310 372 9.59e-17 81.3
Msa1067580 AT4G22070.4 53.125 64 30 0 151 214 294 357 1.05e-16 81.3
Msa1067580 AT4G22070.3 53.125 64 30 0 151 214 294 357 1.05e-16 81.3
Msa1067580 AT4G22070.2 53.125 64 30 0 151 214 294 357 1.05e-16 81.3
Msa1067580 AT4G22070.1 53.125 64 30 0 151 214 294 357 1.05e-16 81.3
Msa1067580 AT1G13960.2 53.968 63 28 1 152 214 254 315 1.23e-16 80.1
Msa1067580 AT1G13960.2 43.939 66 35 2 149 214 71 134 4.98e-11 63.5
Msa1067580 AT1G68150.1 46.053 76 41 0 154 229 235 310 1.31e-16 80.1
Msa1067580 AT1G13960.1 53.968 63 28 1 152 214 407 468 1.66e-16 80.5
Msa1067580 AT1G13960.1 43.939 66 35 2 149 214 224 287 5.02e-11 63.9
Msa1067580 AT5G49520.1 53.333 60 27 1 155 214 222 280 3.22e-16 79.3
Msa1067580 AT3G62340.1 46.988 83 38 2 137 214 96 177 4.53e-16 77.4
Msa1067580 AT2G03340.1 50.000 68 33 1 152 219 413 479 4.71e-16 79.3
Msa1067580 AT5G26170.1 53.968 63 27 2 149 211 109 169 5.52e-16 75.1
Msa1067580 AT4G01720.1 54.098 61 28 0 154 214 239 299 1.67e-15 77.4
Msa1067580 AT2G21900.1 49.180 61 30 1 155 215 110 169 2.06e-15 74.3
Msa1067580 AT5G15130.1 41.111 90 50 1 135 224 211 297 2.08e-15 77.4
Msa1067580 AT5G15130.2 41.111 90 50 1 135 224 169 255 2.46e-15 77.0
Msa1067580 AT2G25000.2 48.333 60 31 0 155 214 104 163 2.94e-15 74.3
Msa1067580 AT2G25000.4 48.333 60 31 0 155 214 104 163 2.94e-15 74.3
Msa1067580 AT1G18860.1 43.750 80 42 1 135 214 223 299 3.79e-15 76.6
Msa1067580 AT4G26640.5 46.835 79 36 2 146 219 192 269 4.66e-15 75.9
Msa1067580 AT4G26640.6 46.835 79 36 2 146 219 192 269 4.66e-15 75.9
Msa1067580 AT4G26640.4 46.835 79 36 2 146 219 192 269 4.66e-15 75.9
Msa1067580 AT4G26640.3 46.835 79 36 2 146 219 192 269 4.66e-15 75.9
Msa1067580 AT2G25000.3 48.333 60 31 0 155 214 126 185 4.99e-15 73.9
Msa1067580 AT4G26640.2 42.308 104 44 4 131 219 343 445 5.28e-15 76.3
Msa1067580 AT4G26640.7 42.308 104 44 4 131 219 303 405 5.69e-15 75.9
Msa1067580 AT4G26640.1 42.308 104 44 4 131 219 271 373 5.85e-15 75.9
Msa1067580 AT2G25000.1 48.333 60 31 0 155 214 147 206 6.85e-15 73.9
Msa1067580 AT4G11070.2 44.792 96 41 3 131 214 80 175 9.91e-15 73.6
Msa1067580 AT4G11070.1 44.792 96 41 3 131 214 112 207 1.15e-14 73.9
Msa1067580 AT1G69310.4 50.794 63 29 2 149 211 143 203 1.17e-14 73.6
Msa1067580 AT1G69310.2 50.794 63 29 2 149 211 143 203 1.17e-14 73.6
Msa1067580 AT1G69310.1 50.794 63 29 2 149 211 143 203 1.17e-14 73.6
Msa1067580 AT1G80840.1 40.278 72 43 0 155 226 147 218 1.19e-14 73.9
Msa1067580 AT5G07100.2 50.000 64 31 1 152 215 139 201 1.28e-14 72.4
Msa1067580 AT5G07100.2 45.161 62 33 1 153 214 23 83 3.99e-11 62.4
Msa1067580 AT5G07100.4 50.000 64 31 1 152 215 139 201 1.28e-14 72.4
Msa1067580 AT5G07100.4 45.161 62 33 1 153 214 23 83 3.99e-11 62.4
Msa1067580 AT5G07100.5 50.000 64 31 1 152 215 139 201 1.28e-14 72.4
Msa1067580 AT5G07100.5 45.161 62 33 1 153 214 23 83 3.99e-11 62.4
Msa1067580 AT5G07100.3 50.000 64 31 1 152 215 139 201 1.28e-14 72.4
Msa1067580 AT5G07100.3 45.161 62 33 1 153 214 23 83 3.99e-11 62.4
Msa1067580 AT2G47260.1 39.286 84 49 2 131 214 152 233 1.30e-14 73.9
Msa1067580 AT2G46400.1 40.171 117 61 4 101 209 46 161 3.27e-14 72.4
Msa1067580 AT3G01080.2 50.794 63 30 1 152 214 342 403 3.31e-14 73.6
Msa1067580 AT3G01080.2 41.429 70 39 2 153 222 204 271 9.08e-11 63.2
Msa1067580 AT3G01080.1 50.794 63 30 1 152 214 304 365 3.41e-14 73.2
Msa1067580 AT3G01080.1 41.429 70 39 2 153 222 166 233 9.85e-11 62.8
Msa1067580 AT5G07100.1 50.000 64 31 1 152 215 232 294 3.55e-14 72.4
Msa1067580 AT5G07100.1 45.161 62 33 1 153 214 116 176 7.67e-11 62.8
Msa1067580 AT4G30935.1 46.970 66 34 1 152 217 329 393 4.83e-14 73.2
Msa1067580 AT1G69810.1 45.833 72 38 1 154 224 203 274 5.87e-14 72.4
Msa1067580 AT1G69810.2 45.833 72 38 1 154 224 145 216 8.23e-14 71.6
Msa1067580 AT2G38470.1 46.479 71 37 1 155 225 363 432 8.36e-14 72.4
Msa1067580 AT4G31800.2 45.000 60 33 0 155 214 112 171 1.04e-13 70.1
Msa1067580 AT4G31800.1 45.000 60 33 0 155 214 177 236 1.27e-13 70.9
Msa1067580 AT2G40740.1 42.708 96 43 4 132 215 144 239 1.97e-13 70.1
Msa1067580 AT5G56270.1 51.667 60 28 1 155 214 488 546 2.02e-13 71.6
Msa1067580 AT1G64000.1 40.260 77 45 1 150 226 110 185 2.23e-13 68.2
Msa1067580 AT2G40740.3 42.708 96 43 4 132 215 153 248 2.84e-13 69.7
Msa1067580 AT4G39410.1 39.394 99 55 3 136 230 203 300 6.20e-13 68.9
Msa1067580 AT2G44745.1 42.045 88 46 3 127 211 116 201 6.33e-13 67.4
Msa1067580 AT4G26440.1 46.154 65 34 1 155 219 373 436 6.72e-13 69.7
Msa1067580 AT4G26440.1 48.387 62 30 2 153 214 177 236 2.99e-11 64.7
Msa1067580 AT5G41570.1 40.260 77 45 1 150 226 94 169 9.34e-13 66.2
Msa1067580 AT4G23810.1 49.206 63 30 1 149 209 153 215 9.45e-13 68.6
Msa1067580 AT2G30250.1 44.000 75 36 2 146 215 315 388 1.44e-12 68.2
Msa1067580 AT1G55600.1 44.262 61 33 1 154 214 307 366 1.50e-12 68.6
Msa1067580 AT5G13080.1 44.262 61 33 1 152 212 65 124 1.56e-12 64.7
Msa1067580 AT3G01970.1 35.802 81 51 1 152 232 63 142 1.71e-12 64.7
Msa1067580 AT3G56400.1 34.021 97 57 3 127 217 94 189 3.82e-12 66.2
Msa1067580 AT2G40750.1 32.609 138 74 4 149 267 146 283 4.42e-12 66.6
Msa1067580 AT2G46130.1 45.161 62 33 1 152 213 28 88 1.16e-11 61.2
Msa1067580 AT5G43290.1 45.455 77 39 2 152 228 112 185 1.47e-11 64.3
Msa1067580 AT5G64810.1 45.763 59 31 1 155 213 111 168 2.50e-11 62.4
Msa1067580 AT5G24110.1 44.444 63 33 1 149 209 108 170 5.43e-11 63.2
Msa1067580 AT3G01080.3 41.429 70 39 2 153 222 204 271 5.87e-11 63.2

Find 84 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTGTGTTTGAGCTAATT+TGG 0.118717 7_2:-62339521 None:intergenic
CTGCTATTGCAATTCCTAAT+TGG 0.183200 7_2:+62340362 Msa1067580:CDS
TTTGAAAGTTTAGATGAATT+TGG 0.224134 7_2:+62340319 Msa1067580:CDS
TGAGGTTGTTGTTTCTCTTT+TGG 0.224899 7_2:-62339152 None:intergenic
TCAGCTTGAGGTGGTGTTAA+TGG 0.224988 7_2:-62340124 None:intergenic
AATTTGATTGGATGATTATT+AGG 0.231075 7_2:+62340636 Msa1067580:three_prime_UTR
GATGAAGAAGGAGATGAATT+TGG 0.239015 7_2:+62340265 Msa1067580:CDS
TGTGGCTACTCTTCTATCTT+TGG 0.243238 7_2:+62339322 Msa1067580:CDS
GTAGAGAAAATGGAACATTT+TGG 0.279823 7_2:+62340521 Msa1067580:three_prime_UTR
ATATGGGCATGGAGAAAATA+TGG 0.288611 7_2:+62339808 Msa1067580:CDS
TGCTATTGCAATTCCTAATT+GGG 0.291536 7_2:+62340363 Msa1067580:CDS
GCACTATTAGCAACCCAATT+AGG 0.295679 7_2:-62340376 None:intergenic
GCTGCTGCTGCTACAGCTGC+TGG 0.297450 7_2:+62340397 Msa1067580:CDS
CACAAGAAGGTTCAGGTTGC+AGG 0.297705 7_2:-62339303 None:intergenic
AGAGTCTCTCTTCAGATATA+TGG 0.305175 7_2:+62339791 Msa1067580:CDS
CAAAGGAAGTGTAGTATAGT+AGG 0.326000 7_2:+62340559 Msa1067580:three_prime_UTR
CTAATCTTGTTAAATTTGAT+TGG 0.328937 7_2:+62340624 Msa1067580:three_prime_UTR
TCTTGTGTTTGAGCTAATTT+GGG 0.330263 7_2:-62339520 None:intergenic
TCTTCACCTCCTGAGGTTGT+AGG 0.351765 7_2:-62340178 None:intergenic
GATCTCCACGCGGTGGTTAG+AGG 0.358175 7_2:+62339220 Msa1067580:CDS
GTCAGAAAGTAGAGAAGAAA+AGG 0.360877 7_2:+62340225 Msa1067580:CDS
CAAGAAAGTGACAAAATTTG+AGG 0.365124 7_2:-62339358 None:intergenic
ATTGCAATAGCAGAAGAAAA+TGG 0.365837 7_2:-62340352 None:intergenic
AGAAAAGGAAGATTCTTTGA+TGG 0.372979 7_2:+62340240 Msa1067580:CDS
CTTTACCCATGGAAGAAGAT+TGG 0.393046 7_2:+62339197 Msa1067580:exon
ATGGGTAAAGGGACAAAGTC+TGG 0.395456 7_2:-62339184 None:intergenic
TATAGATGTAGCAGTTCAAA+AGG 0.420572 7_2:+62339971 Msa1067580:CDS
GAGTAGCCACAAGAAGGTTC+AGG 0.422256 7_2:-62339310 None:intergenic
ATGGAGCTTCTAGCTTCAAA+AGG 0.422310 7_2:-62339391 None:intergenic
AATCTTCTTCCATGGGTAAA+GGG 0.436767 7_2:-62339195 None:intergenic
AAAGGAAGTGTAGTATAGTA+GGG 0.445735 7_2:+62340560 Msa1067580:three_prime_UTR
TTTACCCATGGAAGAAGATT+GGG 0.448871 7_2:+62339198 Msa1067580:exon
CAATCTTCTTCCATGGGTAA+AGG 0.453148 7_2:-62339196 None:intergenic
TCTTTGTTGGTTTCAGCTTG+AGG 0.464539 7_2:-62340136 None:intergenic
TATGTTACTATGAACATTGT+TGG 0.470318 7_2:-62340034 None:intergenic
TTGATAAGGTAAAGAGAGAG+AGG 0.476070 7_2:-62339103 None:intergenic
GAGTCTCTCTTCAGATATAT+GGG 0.478312 7_2:+62339792 Msa1067580:CDS
AAGTTCATGCAACTCTTCAA+TGG 0.483711 7_2:-62339410 None:intergenic
AACCTCTTCTTCACCTCCTG+AGG 0.488504 7_2:-62340185 None:intergenic
CCCTCTTCTCCTACAACCTC+AGG 0.495834 7_2:+62340169 Msa1067580:CDS
TTATTAATACTTACATACCT+TGG 0.497438 7_2:+62340662 Msa1067580:three_prime_UTR
GAGATCCCAATCTTCTTCCA+TGG 0.498644 7_2:-62339203 None:intergenic
AGCTAATTTGGGTGAAGCAG+AGG 0.511551 7_2:-62339509 None:intergenic
GCTGCTGCTACAGCTGCTGG+TGG 0.522446 7_2:+62340400 Msa1067580:CDS
TGTAGGTGTGGTTGTTGAAG+TGG 0.522871 7_2:-62339251 None:intergenic
GAAGAAGAAACAGAGGATGT+AGG 0.525651 7_2:-62339268 None:intergenic
TGTGATGATCTTGAAAAGAA+AGG 0.526105 7_2:-62339439 None:intergenic
GGAGGAATCTTTGCTAACAA+AGG 0.526424 7_2:+62340542 Msa1067580:three_prime_UTR
TGATAAGGTAAAGAGAGAGA+GGG 0.527320 7_2:-62339102 None:intergenic
ACAAGAAGGTTCAGGTTGCA+GGG 0.532171 7_2:-62339302 None:intergenic
TATGGGCATGGAGAAAATAT+GGG 0.537903 7_2:+62339809 Msa1067580:CDS
TCTGAAGAGAGACTCTCAAC+TGG 0.540075 7_2:-62339784 None:intergenic
GATAAGGTAAAGAGAGAGAG+GGG 0.545596 7_2:-62339101 None:intergenic
CCTGAGGTTGTAGGAGAAGA+GGG 0.546404 7_2:-62340169 None:intergenic
TATAGTAGGGAGAAACTAGT+AGG 0.560180 7_2:+62340573 Msa1067580:three_prime_UTR
TCTTTGATGGATGATGAAGA+AGG 0.562592 7_2:+62340253 Msa1067580:CDS
AGACTTTGTCCCTTTACCCA+TGG 0.563859 7_2:+62339186 Msa1067580:exon
GGAGAAGTTTGCAACGAAAG+AGG 0.564206 7_2:-62339463 None:intergenic
TCCTGAGGTTGTAGGAGAAG+AGG 0.567164 7_2:-62340170 None:intergenic
AGGTGTGGTTGTTGAAGTGG+TGG 0.568830 7_2:-62339248 None:intergenic
CTGCAACCTGAACCTTCTTG+TGG 0.572424 7_2:+62339304 Msa1067580:CDS
TGGAGCTTCTAGCTTCAAAA+GGG 0.573200 7_2:-62339390 None:intergenic
AGAAACAGAGGATGTAGGTG+TGG 0.573812 7_2:-62339263 None:intergenic
AACAGAGGAAGAAGAAACAG+AGG 0.577059 7_2:-62339275 None:intergenic
TAAGAGAATGAAGAAAACAA+AGG 0.578001 7_2:-62339484 None:intergenic
GAAGAAGAGGTTCAAACTCA+AGG 0.585892 7_2:+62340196 Msa1067580:CDS
AGATCCCAATCTTCTTCCAT+GGG 0.595126 7_2:-62339202 None:intergenic
ATAGAAGAGTAGCCACAAGA+AGG 0.596283 7_2:-62339316 None:intergenic
TAAAAGGGTCACCATATCCA+AGG 0.597269 7_2:+62339842 Msa1067580:CDS
TCTCTTCAGATATATGGGCA+TGG 0.605027 7_2:+62339797 Msa1067580:CDS
TTGTTGGTTTCAGCTTGAGG+TGG 0.614005 7_2:-62340133 None:intergenic
ACTCTCTTGCTGGTTCAACA+AGG 0.623552 7_2:+62340095 Msa1067580:CDS
ATAGATGTAGCAGTTCAAAA+GGG 0.629154 7_2:+62339972 Msa1067580:CDS
AAAATGACTTTACATTACCA+AGG 0.629743 7_2:-62340679 None:intergenic
CAAGAAGGTTCAGGTTGCAG+GGG 0.629954 7_2:-62339301 None:intergenic
AACCTCAGGAGGTGAAGAAG+AGG 0.630119 7_2:+62340183 Msa1067580:CDS
GGTTGGTGAGAGAACCACCT+TGG 0.648538 7_2:-62339576 None:intergenic
AAAGTCTGGAACAATGTCTG+AGG 0.667047 7_2:-62339170 None:intergenic
AGAAGTAAACATTCACACCA+AGG 0.691967 7_2:+62339559 Msa1067580:CDS
TCTTCTCCTACAACCTCAGG+AGG 0.702219 7_2:+62340172 Msa1067580:CDS
AGTAAACATTCACACCAAGG+TGG 0.736776 7_2:+62339562 Msa1067580:CDS
AGATTGGGATCTCCACGCGG+TGG 0.738113 7_2:+62339213 Msa1067580:CDS
AGCAACCTCTAACCACCGCG+TGG 0.744320 7_2:-62339225 None:intergenic
AGAAGATTGGGATCTCCACG+CGG 0.776413 7_2:+62339210 Msa1067580:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGCTTTATTTTTTCTTTAT+AGG + chr7_2:62339731-62339750 Msa1067580:intron 15.0%
!!! AAAAAATTGAATTTTTACCT+TGG - chr7_2:62339862-62339881 None:intergenic 15.0%
!!! AATTTTGTTTTGTGATTTAT+AGG + chr7_2:62339942-62339961 Msa1067580:intron 15.0%
!!! ATTTTGTTTTGTGATTTATA+GGG + chr7_2:62339943-62339962 Msa1067580:intron 15.0%
!!! TTGCTTTATTTTTTCTTTAT+AGG + chr7_2:62339731-62339750 Msa1067580:intron 15.0%
!!! AAAAAATTGAATTTTTACCT+TGG - chr7_2:62339862-62339881 None:intergenic 15.0%
!!! AATTTTGTTTTGTGATTTAT+AGG + chr7_2:62339942-62339961 Msa1067580:intron 15.0%
!!! ATTTTGTTTTGTGATTTATA+GGG + chr7_2:62339943-62339962 Msa1067580:intron 15.0%
!!! AGACTTGATTTTTATTACAT+GGG - chr7_2:62339672-62339691 None:intergenic 20.0%
!!! AAGACTTGATTTTTATTACA+TGG - chr7_2:62339673-62339692 None:intergenic 20.0%
!!! TTTTGTTTTGTGATTTATAG+GGG + chr7_2:62339944-62339963 Msa1067580:intron 20.0%
!! TTTGAAAGTTTAGATGAATT+TGG + chr7_2:62340319-62340338 Msa1067580:CDS 20.0%
!! CTAATCTTGTTAAATTTGAT+TGG + chr7_2:62340624-62340643 Msa1067580:three_prime_UTR 20.0%
!! AATTTGATTGGATGATTATT+AGG + chr7_2:62340636-62340655 Msa1067580:three_prime_UTR 20.0%
!! TTATTAATACTTACATACCT+TGG + chr7_2:62340662-62340681 Msa1067580:three_prime_UTR 20.0%
!!! TCTTTTGTCAATTGTTATTT+TGG + chr7_2:62340716-62340735 Msa1067580:three_prime_UTR 20.0%
!!! AGACTTGATTTTTATTACAT+GGG - chr7_2:62339672-62339691 None:intergenic 20.0%
!!! AAGACTTGATTTTTATTACA+TGG - chr7_2:62339673-62339692 None:intergenic 20.0%
!!! TTTTGTTTTGTGATTTATAG+GGG + chr7_2:62339944-62339963 Msa1067580:intron 20.0%
!! TTTGAAAGTTTAGATGAATT+TGG + chr7_2:62340319-62340338 Msa1067580:CDS 20.0%
!! CTAATCTTGTTAAATTTGAT+TGG + chr7_2:62340624-62340643 Msa1067580:three_prime_UTR 20.0%
!! AATTTGATTGGATGATTATT+AGG + chr7_2:62340636-62340655 Msa1067580:three_prime_UTR 20.0%
!! TTATTAATACTTACATACCT+TGG + chr7_2:62340662-62340681 Msa1067580:three_prime_UTR 20.0%
!!! TCTTTTGTCAATTGTTATTT+TGG + chr7_2:62340716-62340735 Msa1067580:three_prime_UTR 20.0%
! TAAGAGAATGAAGAAAACAA+AGG - chr7_2:62339487-62339506 None:intergenic 25.0%
!! TTTACCTTCTTTTTGATCTT+GGG - chr7_2:62339600-62339619 None:intergenic 25.0%
!! ATTTACCTTCTTTTTGATCT+TGG - chr7_2:62339601-62339620 None:intergenic 25.0%
!! TTGAATTTTTACCTTGGATA+TGG - chr7_2:62339856-62339875 None:intergenic 25.0%
! TATGTTACTATGAACATTGT+TGG - chr7_2:62340037-62340056 None:intergenic 25.0%
!! CATTTTCTCTACAAACAAAA+AGG - chr7_2:62340513-62340532 None:intergenic 25.0%
!!! CTTTTTGTTTGTAGAGAAAA+TGG + chr7_2:62340511-62340530 Msa1067580:three_prime_UTR 25.0%
! AAAATGACTTTACATTACCA+AGG - chr7_2:62340682-62340701 None:intergenic 25.0%
! TAAGAGAATGAAGAAAACAA+AGG - chr7_2:62339487-62339506 None:intergenic 25.0%
!! TTTACCTTCTTTTTGATCTT+GGG - chr7_2:62339600-62339619 None:intergenic 25.0%
!! ATTTACCTTCTTTTTGATCT+TGG - chr7_2:62339601-62339620 None:intergenic 25.0%
!! TTGAATTTTTACCTTGGATA+TGG - chr7_2:62339856-62339875 None:intergenic 25.0%
! TATGTTACTATGAACATTGT+TGG - chr7_2:62340037-62340056 None:intergenic 25.0%
!! CATTTTCTCTACAAACAAAA+AGG - chr7_2:62340513-62340532 None:intergenic 25.0%
!!! CTTTTTGTTTGTAGAGAAAA+TGG + chr7_2:62340511-62340530 Msa1067580:three_prime_UTR 25.0%
! AAAATGACTTTACATTACCA+AGG - chr7_2:62340682-62340701 None:intergenic 25.0%
!! TTTTGGAGAAAGACAAAAGA+AGG - chr7_2:62339138-62339157 None:intergenic 30.0%
CAAGAAAGTGACAAAATTTG+AGG - chr7_2:62339361-62339380 None:intergenic 30.0%
TGTGATGATCTTGAAAAGAA+AGG - chr7_2:62339442-62339461 None:intergenic 30.0%
TCTTGTGTTTGAGCTAATTT+GGG - chr7_2:62339523-62339542 None:intergenic 30.0%
TATGGGCAAAAACCTATAAA+AGG + chr7_2:62339826-62339845 Msa1067580:CDS 30.0%
ATGGGCAAAAACCTATAAAA+GGG + chr7_2:62339827-62339846 Msa1067580:CDS 30.0%
TATAGATGTAGCAGTTCAAA+AGG + chr7_2:62339971-62339990 Msa1067580:CDS 30.0%
ATAGATGTAGCAGTTCAAAA+GGG + chr7_2:62339972-62339991 Msa1067580:CDS 30.0%
AGAAAAGGAAGATTCTTTGA+TGG + chr7_2:62340240-62340259 Msa1067580:CDS 30.0%
ATTGCAATAGCAGAAGAAAA+TGG - chr7_2:62340355-62340374 None:intergenic 30.0%
TGCTATTGCAATTCCTAATT+GGG + chr7_2:62340363-62340382 Msa1067580:CDS 30.0%
!!! GCTTTTTCATTGAAGAGAAT+AGG + chr7_2:62340467-62340486 Msa1067580:three_prime_UTR 30.0%
! GTAGAGAAAATGGAACATTT+TGG + chr7_2:62340521-62340540 Msa1067580:three_prime_UTR 30.0%
! AAAGGAAGTGTAGTATAGTA+GGG + chr7_2:62340560-62340579 Msa1067580:three_prime_UTR 30.0%
!! TTTTGGCTAAGATTTTGTTG+AGG + chr7_2:62340733-62340752 Msa1067580:three_prime_UTR 30.0%
!! TTTTGGAGAAAGACAAAAGA+AGG - chr7_2:62339138-62339157 None:intergenic 30.0%
CAAGAAAGTGACAAAATTTG+AGG - chr7_2:62339361-62339380 None:intergenic 30.0%
TGTGATGATCTTGAAAAGAA+AGG - chr7_2:62339442-62339461 None:intergenic 30.0%
TCTTGTGTTTGAGCTAATTT+GGG - chr7_2:62339523-62339542 None:intergenic 30.0%
TATGGGCAAAAACCTATAAA+AGG + chr7_2:62339826-62339845 Msa1067580:CDS 30.0%
ATGGGCAAAAACCTATAAAA+GGG + chr7_2:62339827-62339846 Msa1067580:CDS 30.0%
TATAGATGTAGCAGTTCAAA+AGG + chr7_2:62339971-62339990 Msa1067580:CDS 30.0%
ATAGATGTAGCAGTTCAAAA+GGG + chr7_2:62339972-62339991 Msa1067580:CDS 30.0%
AGAAAAGGAAGATTCTTTGA+TGG + chr7_2:62340240-62340259 Msa1067580:CDS 30.0%
ATTGCAATAGCAGAAGAAAA+TGG - chr7_2:62340355-62340374 None:intergenic 30.0%
TGCTATTGCAATTCCTAATT+GGG + chr7_2:62340363-62340382 Msa1067580:CDS 30.0%
!!! GCTTTTTCATTGAAGAGAAT+AGG + chr7_2:62340467-62340486 Msa1067580:three_prime_UTR 30.0%
! GTAGAGAAAATGGAACATTT+TGG + chr7_2:62340521-62340540 Msa1067580:three_prime_UTR 30.0%
! AAAGGAAGTGTAGTATAGTA+GGG + chr7_2:62340560-62340579 Msa1067580:three_prime_UTR 30.0%
!! TTTTGGCTAAGATTTTGTTG+AGG + chr7_2:62340733-62340752 Msa1067580:three_prime_UTR 30.0%
TGATAAGGTAAAGAGAGAGA+GGG - chr7_2:62339105-62339124 None:intergenic 35.0%
TTGATAAGGTAAAGAGAGAG+AGG - chr7_2:62339106-62339125 None:intergenic 35.0%
!!! TGAGGTTGTTGTTTCTCTTT+TGG - chr7_2:62339155-62339174 None:intergenic 35.0%
AATCTTCTTCCATGGGTAAA+GGG - chr7_2:62339198-62339217 None:intergenic 35.0%
TTTACCCATGGAAGAAGATT+GGG + chr7_2:62339198-62339217 Msa1067580:exon 35.0%
AAGTTCATGCAACTCTTCAA+TGG - chr7_2:62339413-62339432 None:intergenic 35.0%
CTCTTGTGTTTGAGCTAATT+TGG - chr7_2:62339524-62339543 None:intergenic 35.0%
AGAAGTAAACATTCACACCA+AGG + chr7_2:62339559-62339578 Msa1067580:CDS 35.0%
AGAGTCTCTCTTCAGATATA+TGG + chr7_2:62339791-62339810 Msa1067580:CDS 35.0%
GAGTCTCTCTTCAGATATAT+GGG + chr7_2:62339792-62339811 Msa1067580:CDS 35.0%
ATATGGGCATGGAGAAAATA+TGG + chr7_2:62339808-62339827 Msa1067580:CDS 35.0%
TATGGGCATGGAGAAAATAT+GGG + chr7_2:62339809-62339828 Msa1067580:CDS 35.0%
GTCAGAAAGTAGAGAAGAAA+AGG + chr7_2:62340225-62340244 Msa1067580:CDS 35.0%
! TCTTTGATGGATGATGAAGA+AGG + chr7_2:62340253-62340272 Msa1067580:CDS 35.0%
GATGAAGAAGGAGATGAATT+TGG + chr7_2:62340265-62340284 Msa1067580:CDS 35.0%
CTGCTATTGCAATTCCTAAT+TGG + chr7_2:62340362-62340381 Msa1067580:CDS 35.0%
! GAGAAAATGGAACATTTTGG+AGG + chr7_2:62340524-62340543 Msa1067580:three_prime_UTR 35.0%
! CAAAGGAAGTGTAGTATAGT+AGG + chr7_2:62340559-62340578 Msa1067580:three_prime_UTR 35.0%
TATAGTAGGGAGAAACTAGT+AGG + chr7_2:62340573-62340592 Msa1067580:three_prime_UTR 35.0%
TGATAAGGTAAAGAGAGAGA+GGG - chr7_2:62339105-62339124 None:intergenic 35.0%
TTGATAAGGTAAAGAGAGAG+AGG - chr7_2:62339106-62339125 None:intergenic 35.0%
!!! TGAGGTTGTTGTTTCTCTTT+TGG - chr7_2:62339155-62339174 None:intergenic 35.0%
AATCTTCTTCCATGGGTAAA+GGG - chr7_2:62339198-62339217 None:intergenic 35.0%
TTTACCCATGGAAGAAGATT+GGG + chr7_2:62339198-62339217 Msa1067580:exon 35.0%
AAGTTCATGCAACTCTTCAA+TGG - chr7_2:62339413-62339432 None:intergenic 35.0%
CTCTTGTGTTTGAGCTAATT+TGG - chr7_2:62339524-62339543 None:intergenic 35.0%
AGAAGTAAACATTCACACCA+AGG + chr7_2:62339559-62339578 Msa1067580:CDS 35.0%
AGAGTCTCTCTTCAGATATA+TGG + chr7_2:62339791-62339810 Msa1067580:CDS 35.0%
GAGTCTCTCTTCAGATATAT+GGG + chr7_2:62339792-62339811 Msa1067580:CDS 35.0%
ATATGGGCATGGAGAAAATA+TGG + chr7_2:62339808-62339827 Msa1067580:CDS 35.0%
TATGGGCATGGAGAAAATAT+GGG + chr7_2:62339809-62339828 Msa1067580:CDS 35.0%
GTCAGAAAGTAGAGAAGAAA+AGG + chr7_2:62340225-62340244 Msa1067580:CDS 35.0%
! TCTTTGATGGATGATGAAGA+AGG + chr7_2:62340253-62340272 Msa1067580:CDS 35.0%
GATGAAGAAGGAGATGAATT+TGG + chr7_2:62340265-62340284 Msa1067580:CDS 35.0%
CTGCTATTGCAATTCCTAAT+TGG + chr7_2:62340362-62340381 Msa1067580:CDS 35.0%
! GAGAAAATGGAACATTTTGG+AGG + chr7_2:62340524-62340543 Msa1067580:three_prime_UTR 35.0%
! CAAAGGAAGTGTAGTATAGT+AGG + chr7_2:62340559-62340578 Msa1067580:three_prime_UTR 35.0%
TATAGTAGGGAGAAACTAGT+AGG + chr7_2:62340573-62340592 Msa1067580:three_prime_UTR 35.0%
GATAAGGTAAAGAGAGAGAG+GGG - chr7_2:62339104-62339123 None:intergenic 40.0%
! AAAGTCTGGAACAATGTCTG+AGG - chr7_2:62339173-62339192 None:intergenic 40.0%
CAATCTTCTTCCATGGGTAA+AGG - chr7_2:62339199-62339218 None:intergenic 40.0%
CTTTACCCATGGAAGAAGAT+TGG + chr7_2:62339197-62339216 Msa1067580:exon 40.0%
AGATCCCAATCTTCTTCCAT+GGG - chr7_2:62339205-62339224 None:intergenic 40.0%
GAAGAAGAAACAGAGGATGT+AGG - chr7_2:62339271-62339290 None:intergenic 40.0%
AACAGAGGAAGAAGAAACAG+AGG - chr7_2:62339278-62339297 None:intergenic 40.0%
ATAGAAGAGTAGCCACAAGA+AGG - chr7_2:62339319-62339338 None:intergenic 40.0%
TGTGGCTACTCTTCTATCTT+TGG + chr7_2:62339322-62339341 Msa1067580:CDS 40.0%
!! TGGAGCTTCTAGCTTCAAAA+GGG - chr7_2:62339393-62339412 None:intergenic 40.0%
!! ATGGAGCTTCTAGCTTCAAA+AGG - chr7_2:62339394-62339413 None:intergenic 40.0%
AGTAAACATTCACACCAAGG+TGG + chr7_2:62339562-62339581 Msa1067580:CDS 40.0%
! CCTTCTTTTTGATCTTGGGT+TGG - chr7_2:62339596-62339615 None:intergenic 40.0%
CCAACCCAAGATCAAAAAGA+AGG + chr7_2:62339593-62339612 Msa1067580:CDS 40.0%
TCTCTTCAGATATATGGGCA+TGG + chr7_2:62339797-62339816 Msa1067580:CDS 40.0%
! GGATATGGTGACCCTTTTAT+AGG - chr7_2:62339841-62339860 None:intergenic 40.0%
TAAAAGGGTCACCATATCCA+AGG + chr7_2:62339842-62339861 Msa1067580:CDS 40.0%
! GCAAGAGAGTTTTTGTGTGT+AGG - chr7_2:62340085-62340104 None:intergenic 40.0%
ACACACAAAAACTCTCTTGC+TGG + chr7_2:62340085-62340104 Msa1067580:CDS 40.0%
!! TCTTTGTTGGTTTCAGCTTG+AGG - chr7_2:62340139-62340158 None:intergenic 40.0%
!! GGGTTTTGTAGGATCTTTGT+TGG - chr7_2:62340152-62340171 None:intergenic 40.0%
GAAGAAGAGGTTCAAACTCA+AGG + chr7_2:62340196-62340215 Msa1067580:CDS 40.0%
GCACTATTAGCAACCCAATT+AGG - chr7_2:62340379-62340398 None:intergenic 40.0%
GGAGGAATCTTTGCTAACAA+AGG + chr7_2:62340542-62340561 Msa1067580:three_prime_UTR 40.0%
GATAAGGTAAAGAGAGAGAG+GGG - chr7_2:62339104-62339123 None:intergenic 40.0%
! AAAGTCTGGAACAATGTCTG+AGG - chr7_2:62339173-62339192 None:intergenic 40.0%
CAATCTTCTTCCATGGGTAA+AGG - chr7_2:62339199-62339218 None:intergenic 40.0%
CTTTACCCATGGAAGAAGAT+TGG + chr7_2:62339197-62339216 Msa1067580:exon 40.0%
AGATCCCAATCTTCTTCCAT+GGG - chr7_2:62339205-62339224 None:intergenic 40.0%
GAAGAAGAAACAGAGGATGT+AGG - chr7_2:62339271-62339290 None:intergenic 40.0%
AACAGAGGAAGAAGAAACAG+AGG - chr7_2:62339278-62339297 None:intergenic 40.0%
ATAGAAGAGTAGCCACAAGA+AGG - chr7_2:62339319-62339338 None:intergenic 40.0%
TGTGGCTACTCTTCTATCTT+TGG + chr7_2:62339322-62339341 Msa1067580:CDS 40.0%
!! TGGAGCTTCTAGCTTCAAAA+GGG - chr7_2:62339393-62339412 None:intergenic 40.0%
!! ATGGAGCTTCTAGCTTCAAA+AGG - chr7_2:62339394-62339413 None:intergenic 40.0%
AGTAAACATTCACACCAAGG+TGG + chr7_2:62339562-62339581 Msa1067580:CDS 40.0%
! CCTTCTTTTTGATCTTGGGT+TGG - chr7_2:62339596-62339615 None:intergenic 40.0%
CCAACCCAAGATCAAAAAGA+AGG + chr7_2:62339593-62339612 Msa1067580:CDS 40.0%
TCTCTTCAGATATATGGGCA+TGG + chr7_2:62339797-62339816 Msa1067580:CDS 40.0%
! GGATATGGTGACCCTTTTAT+AGG - chr7_2:62339841-62339860 None:intergenic 40.0%
TAAAAGGGTCACCATATCCA+AGG + chr7_2:62339842-62339861 Msa1067580:CDS 40.0%
! GCAAGAGAGTTTTTGTGTGT+AGG - chr7_2:62340085-62340104 None:intergenic 40.0%
ACACACAAAAACTCTCTTGC+TGG + chr7_2:62340085-62340104 Msa1067580:CDS 40.0%
!! TCTTTGTTGGTTTCAGCTTG+AGG - chr7_2:62340139-62340158 None:intergenic 40.0%
!! GGGTTTTGTAGGATCTTTGT+TGG - chr7_2:62340152-62340171 None:intergenic 40.0%
GAAGAAGAGGTTCAAACTCA+AGG + chr7_2:62340196-62340215 Msa1067580:CDS 40.0%
GCACTATTAGCAACCCAATT+AGG - chr7_2:62340379-62340398 None:intergenic 40.0%
GGAGGAATCTTTGCTAACAA+AGG + chr7_2:62340542-62340561 Msa1067580:three_prime_UTR 40.0%
!!! GAAGGCGCTGACTTTTGATA+AGG - chr7_2:62339120-62339139 None:intergenic 45.0%
ATGGGTAAAGGGACAAAGTC+TGG - chr7_2:62339187-62339206 None:intergenic 45.0%
AGACTTTGTCCCTTTACCCA+TGG + chr7_2:62339186-62339205 Msa1067580:exon 45.0%
GAGATCCCAATCTTCTTCCA+TGG - chr7_2:62339206-62339225 None:intergenic 45.0%
TGTAGGTGTGGTTGTTGAAG+TGG - chr7_2:62339254-62339273 None:intergenic 45.0%
AGAAACAGAGGATGTAGGTG+TGG - chr7_2:62339266-62339285 None:intergenic 45.0%
!! ACAAGAAGGTTCAGGTTGCA+GGG - chr7_2:62339305-62339324 None:intergenic 45.0%
GGAGAAGTTTGCAACGAAAG+AGG - chr7_2:62339466-62339485 None:intergenic 45.0%
AGCTAATTTGGGTGAAGCAG+AGG - chr7_2:62339512-62339531 None:intergenic 45.0%
TCTGAAGAGAGACTCTCAAC+TGG - chr7_2:62339787-62339806 None:intergenic 45.0%
! GAGTTTTTGTGTGTAGGAGC+AGG - chr7_2:62340079-62340098 None:intergenic 45.0%
!! ACTCTCTTGCTGGTTCAACA+AGG + chr7_2:62340095-62340114 Msa1067580:CDS 45.0%
! TCAGCTTGAGGTGGTGTTAA+TGG - chr7_2:62340127-62340146 None:intergenic 45.0%
!! TTGTTGGTTTCAGCTTGAGG+TGG - chr7_2:62340136-62340155 None:intergenic 45.0%
!! GTAGGAGAAGAGGGTTTTGT+AGG - chr7_2:62340163-62340182 None:intergenic 45.0%
!!! GAAGGCGCTGACTTTTGATA+AGG - chr7_2:62339120-62339139 None:intergenic 45.0%
ATGGGTAAAGGGACAAAGTC+TGG - chr7_2:62339187-62339206 None:intergenic 45.0%
AGACTTTGTCCCTTTACCCA+TGG + chr7_2:62339186-62339205 Msa1067580:exon 45.0%
GAGATCCCAATCTTCTTCCA+TGG - chr7_2:62339206-62339225 None:intergenic 45.0%
TGTAGGTGTGGTTGTTGAAG+TGG - chr7_2:62339254-62339273 None:intergenic 45.0%
AGAAACAGAGGATGTAGGTG+TGG - chr7_2:62339266-62339285 None:intergenic 45.0%
!! ACAAGAAGGTTCAGGTTGCA+GGG - chr7_2:62339305-62339324 None:intergenic 45.0%
GGAGAAGTTTGCAACGAAAG+AGG - chr7_2:62339466-62339485 None:intergenic 45.0%
AGCTAATTTGGGTGAAGCAG+AGG - chr7_2:62339512-62339531 None:intergenic 45.0%
TCTGAAGAGAGACTCTCAAC+TGG - chr7_2:62339787-62339806 None:intergenic 45.0%
! GAGTTTTTGTGTGTAGGAGC+AGG - chr7_2:62340079-62340098 None:intergenic 45.0%
!! ACTCTCTTGCTGGTTCAACA+AGG + chr7_2:62340095-62340114 Msa1067580:CDS 45.0%
! TCAGCTTGAGGTGGTGTTAA+TGG - chr7_2:62340127-62340146 None:intergenic 45.0%
!! TTGTTGGTTTCAGCTTGAGG+TGG - chr7_2:62340136-62340155 None:intergenic 45.0%
!! GTAGGAGAAGAGGGTTTTGT+AGG - chr7_2:62340163-62340182 None:intergenic 45.0%
AGAAGATTGGGATCTCCACG+CGG + chr7_2:62339210-62339229 Msa1067580:CDS 50.0%
AGGTGTGGTTGTTGAAGTGG+TGG - chr7_2:62339251-62339270 None:intergenic 50.0%
AGGTTGCAGGGGAAAAACAG+AGG - chr7_2:62339293-62339312 None:intergenic 50.0%
!! CAAGAAGGTTCAGGTTGCAG+GGG - chr7_2:62339304-62339323 None:intergenic 50.0%
!! CACAAGAAGGTTCAGGTTGC+AGG - chr7_2:62339306-62339325 None:intergenic 50.0%
CTGCAACCTGAACCTTCTTG+TGG + chr7_2:62339304-62339323 Msa1067580:CDS 50.0%
GAGTAGCCACAAGAAGGTTC+AGG - chr7_2:62339313-62339332 None:intergenic 50.0%
CCTGAGGTTGTAGGAGAAGA+GGG - chr7_2:62340172-62340191 None:intergenic 50.0%
TCCTGAGGTTGTAGGAGAAG+AGG - chr7_2:62340173-62340192 None:intergenic 50.0%
TCTTCTCCTACAACCTCAGG+AGG + chr7_2:62340172-62340191 Msa1067580:CDS 50.0%
TCTTCACCTCCTGAGGTTGT+AGG - chr7_2:62340181-62340200 None:intergenic 50.0%
AACCTCAGGAGGTGAAGAAG+AGG + chr7_2:62340183-62340202 Msa1067580:CDS 50.0%
AACCTCTTCTTCACCTCCTG+AGG - chr7_2:62340188-62340207 None:intergenic 50.0%
AGAAGATTGGGATCTCCACG+CGG + chr7_2:62339210-62339229 Msa1067580:CDS 50.0%
AGGTGTGGTTGTTGAAGTGG+TGG - chr7_2:62339251-62339270 None:intergenic 50.0%
AGGTTGCAGGGGAAAAACAG+AGG - chr7_2:62339293-62339312 None:intergenic 50.0%
!! CAAGAAGGTTCAGGTTGCAG+GGG - chr7_2:62339304-62339323 None:intergenic 50.0%
!! CACAAGAAGGTTCAGGTTGC+AGG - chr7_2:62339306-62339325 None:intergenic 50.0%
CTGCAACCTGAACCTTCTTG+TGG + chr7_2:62339304-62339323 Msa1067580:CDS 50.0%
GAGTAGCCACAAGAAGGTTC+AGG - chr7_2:62339313-62339332 None:intergenic 50.0%
CCTGAGGTTGTAGGAGAAGA+GGG - chr7_2:62340172-62340191 None:intergenic 50.0%
TCCTGAGGTTGTAGGAGAAG+AGG - chr7_2:62340173-62340192 None:intergenic 50.0%
TCTTCTCCTACAACCTCAGG+AGG + chr7_2:62340172-62340191 Msa1067580:CDS 50.0%
TCTTCACCTCCTGAGGTTGT+AGG - chr7_2:62340181-62340200 None:intergenic 50.0%
AACCTCAGGAGGTGAAGAAG+AGG + chr7_2:62340183-62340202 Msa1067580:CDS 50.0%
AACCTCTTCTTCACCTCCTG+AGG - chr7_2:62340188-62340207 None:intergenic 50.0%
!! GGTTGGTGAGAGAACCACCT+TGG - chr7_2:62339579-62339598 None:intergenic 55.0%
CCCTCTTCTCCTACAACCTC+AGG + chr7_2:62340169-62340188 Msa1067580:CDS 55.0%
!! GGTTGGTGAGAGAACCACCT+TGG - chr7_2:62339579-62339598 None:intergenic 55.0%
CCCTCTTCTCCTACAACCTC+AGG + chr7_2:62340169-62340188 Msa1067580:CDS 55.0%
AGATTGGGATCTCCACGCGG+TGG + chr7_2:62339213-62339232 Msa1067580:CDS 60.0%
GATCTCCACGCGGTGGTTAG+AGG + chr7_2:62339220-62339239 Msa1067580:CDS 60.0%
AGCAACCTCTAACCACCGCG+TGG - chr7_2:62339228-62339247 None:intergenic 60.0%
AGATTGGGATCTCCACGCGG+TGG + chr7_2:62339213-62339232 Msa1067580:CDS 60.0%
GATCTCCACGCGGTGGTTAG+AGG + chr7_2:62339220-62339239 Msa1067580:CDS 60.0%
AGCAACCTCTAACCACCGCG+TGG - chr7_2:62339228-62339247 None:intergenic 60.0%
GCTGCTGCTGCTACAGCTGC+TGG + chr7_2:62340397-62340416 Msa1067580:CDS 65.0%
GCTGCTGCTACAGCTGCTGG+TGG + chr7_2:62340400-62340419 Msa1067580:CDS 65.0%
GCTGCTGCTGCTACAGCTGC+TGG + chr7_2:62340397-62340416 Msa1067580:CDS 65.0%
GCTGCTGCTACAGCTGCTGG+TGG + chr7_2:62340400-62340419 Msa1067580:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 62339101 62340772 62339101 ID=Msa1067580;Name=Msa1067580
chr7_2 mRNA 62339101 62340772 62339101 ID=Msa1067580-mRNA-1;Parent=Msa1067580;Name=Msa1067580-mRNA-1;_AED=0.04;_eAED=0.04;_QI=104|1|1|1|1|1|3|343|328
chr7_2 exon 62339101 62339614 62339101 ID=Msa1067580-mRNA-1:exon:12615;Parent=Msa1067580-mRNA-1
chr7_2 exon 62339753 62339863 62339753 ID=Msa1067580-mRNA-1:exon:12616;Parent=Msa1067580-mRNA-1
chr7_2 exon 62339964 62340772 62339964 ID=Msa1067580-mRNA-1:exon:12617;Parent=Msa1067580-mRNA-1
chr7_2 five_prime_UTR 62339101 62339204 62339101 ID=Msa1067580-mRNA-1:five_prime_utr;Parent=Msa1067580-mRNA-1
chr7_2 CDS 62339205 62339614 62339205 ID=Msa1067580-mRNA-1:cds;Parent=Msa1067580-mRNA-1
chr7_2 CDS 62339753 62339863 62339753 ID=Msa1067580-mRNA-1:cds;Parent=Msa1067580-mRNA-1
chr7_2 CDS 62339964 62340429 62339964 ID=Msa1067580-mRNA-1:cds;Parent=Msa1067580-mRNA-1
chr7_2 three_prime_UTR 62340430 62340772 62340430 ID=Msa1067580-mRNA-1:three_prime_utr;Parent=Msa1067580-mRNA-1
Gene Sequence

>Msa1067580

ATGGAAGAAGATTGGGATCTCCACGCGGTGGTTAGAGGTTGCTCCACCACTTCAACAACCACACCTACATCCTCTGTTTCTTCTTCCTCTGTTTTTCCCCTGCAACCTGAACCTTCTTGTGGCTACTCTTCTATCTTTGGTAGTGAACAAAAACCTCAAATTTTGTCACTTTCTTGTTCTACACACCCTTTTGAAGCTAGAAGCTCCATTGAAGAGTTGCATGAACTTTGCAAGCCTTTCTTTTCAAGATCATCACAGCCTCTTTCGTTGCAAACTTCTCCTTTGTTTTCTTCATTCTCTTATTCCTCTGCTTCACCCAAATTAGCTCAAACACAAGAGAAACAACAACTTCAAAGAAGTAAACATTCACACCAAGGTGGTTCTCTCACCAACCCAAGATCAAAAAGAAGGAAAAATCAACTTAAGAAAGTTTGTCAAGTACCAGTTGAGAGTCTCTCTTCAGATATATGGGCATGGAGAAAATATGGGCAAAAACCTATAAAAGGGTCACCATATCCAAGGGGCTATTATAGATGTAGCAGTTCAAAAGGGTGTTTAGCAAGAAAACAAGTTGAAAGAAACAGAACAGATCCAACAATGTTCATAGTAACATATACATGTGAACACAATCATCCTGCTCCTACACACAAAAACTCTCTTGCTGGTTCAACAAGGCAGAAGCCATTAACACCACCTCAAGCTGAAACCAACAAAGATCCTACAAAACCCTCTTCTCCTACAACCTCAGGAGGTGAAGAAGAGGTTCAAACTCAAGGAGAAAAGTCAGAAAGTAGAGAAGAAAAGGAAGATTCTTTGATGGATGATGAAGAAGGAGATGAATTTGGTTTATCTGATGTTGTTTTAAGTGATGATTTCTTTGAAAGTTTAGATGAATTTGGTTTCACAGATCCATTTTCTTCTGCTATTGCAATTCCTAATTGGGTTGCTAATAGTGCTGCTGCTGCTACAGCTGCTGGTGGTAGCTGA
Protein sequence

>Msa1067580

MEEDWDLHAVVRGCSTTSTTTPTSSVSSSSVFPLQPEPSCGYSSIFGSEQKPQILSLSCSTHPFEARSSIEELHELCKPFFSRSSQPLSLQTSPLFSSFSYSSASPKLAQTQEKQQLQRSKHSHQGGSLTNPRSKRRKNQLKKVCQVPVESLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRTDPTMFIVTYTCEHNHPAPTHKNSLAGSTRQKPLTPPQAETNKDPTKPSSPTTSGGEEEVQTQGEKSESREEKEDSLMDDEEGDEFGLSDVVLSDDFFESLDEFGFTDPFSSAIAIPNWVANSAAAATAAGGS*