AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1028880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1028880 MtrunA17_Chr7g0249251 94.531 128 6 1 4 130 45 172 2.16e-78 229
Msa1028880 MtrunA17_Chr7g0221761 48.864 88 38 3 30 115 64 146 3.50e-20 80.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1028880 AT5G16490.1 48.421 95 45 3 19 111 48 140 6.76e-20 80.1

Find 81 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTCATACCTATACTTGTT+TGG 0.214133 7_1:-62080136 None:intergenic
ATGGGAGATGTTTCATGTTT+TGG 0.253272 7_1:-62081250 None:intergenic
TCTCATACCTATACTTGTTT+GGG 0.281024 7_1:-62080135 None:intergenic
GATGAAATGGACATGGAAAT+AGG 0.297095 7_1:+62081088 Msa1028880:CDS
TGAATTTAGTCATTCGATAA+AGG 0.317790 7_1:+62079823 Msa1028880:five_prime_UTR
GTCATTCTTCCTTTCTCAGC+TGG 0.335866 7_1:+62079535 Msa1028880:five_prime_UTR
TGGGGATAGGGTACTCTCTT+AGG 0.347139 7_1:-62079329 None:intergenic
ATATCATTAATGAATTAGTT+TGG 0.351066 7_1:-62079255 None:intergenic
GTGAATATCTCAATTGGAAT+TGG 0.354042 7_1:-62079473 None:intergenic
TTACTAGCTAAATAAAACTA+AGG 0.371765 7_1:-62079736 None:intergenic
TTGAAGGATAGGTTAGGCTT+TGG 0.378556 7_1:-62080430 None:intergenic
GATGATATGATAAGATTAGA+AGG 0.379519 7_1:+62080331 Msa1028880:exon
GGACTTACAAGAAGATGAAA+TGG 0.381998 7_1:+62081075 Msa1028880:CDS
GTCTCATACTTTCTTATGAT+AGG 0.392213 7_1:-62079495 None:intergenic
AGAGAATCCCATCCCCTCAT+TGG 0.414199 7_1:-62081184 None:intergenic
TGATAGGTGAATATCTCAAT+TGG 0.415950 7_1:-62079479 None:intergenic
TCAATTAATCAAGCAATAGA+AGG 0.417530 7_1:-62081283 None:intergenic
GCCTTTGAACAACTTGTTGA+AGG 0.426359 7_1:-62080446 None:intergenic
GATATCATAGTAAAAGAGAT+AGG 0.438651 7_1:-62079654 None:intergenic
AATATATGTTTAATAGAGAA+TGG 0.446012 7_1:-62080103 None:intergenic
ATGAAATGGACATGGAAATA+GGG 0.448347 7_1:+62081089 Msa1028880:CDS
GAGGATTCAGAGACTTTGTC+TGG 0.450700 7_1:+62080367 Msa1028880:CDS
AATAGAAGGCATGATGTTGA+TGG 0.460773 7_1:-62081269 None:intergenic
AACATGTGACACACATTGGT+TGG 0.460995 7_1:+62081128 Msa1028880:CDS
AGTTGTTATATCTCCATTCA+AGG 0.469327 7_1:+62079417 Msa1028880:five_prime_UTR
TGAACAACTTGTTGAAGGAT+AGG 0.476710 7_1:-62080441 None:intergenic
TGTGGTGAATTAGTCTCTGC+AGG 0.479443 7_1:-62079613 None:intergenic
TAGTCATTCGATAAAGGACT+TGG 0.489137 7_1:+62079829 Msa1028880:five_prime_UTR
AATTAGTTTGGTGAGTGAAA+GGG 0.489867 7_1:-62079243 None:intergenic
GAGAATCCCATCCCCTCATT+GGG 0.490983 7_1:-62081183 None:intergenic
ATAAGATTAGAAGGATCTAA+AGG 0.496998 7_1:+62080340 Msa1028880:CDS
ATACAATAAATTTGACCATC+GGG 0.499296 7_1:-62080060 None:intergenic
GAATTAGTTTGGTGAGTGAA+AGG 0.501822 7_1:-62079244 None:intergenic
AGTAAGACACACATGGGGAT+AGG 0.506123 7_1:-62079342 None:intergenic
TATGACAACATACCACCATA+TGG 0.511116 7_1:-62079907 None:intergenic
CTCATGACCCAATGAGGGGA+TGG 0.511835 7_1:+62081176 Msa1028880:CDS
GAGGCTACAGAGAGAAGCTC+AGG 0.512955 7_1:-62081214 None:intergenic
GTAAGACACACATGGGGATA+GGG 0.521490 7_1:-62079341 None:intergenic
AGAAAGTATGAGACAGAGAA+TGG 0.521813 7_1:+62079504 Msa1028880:five_prime_UTR
TCCTTCAACAAGTTGTTCAA+AGG 0.523718 7_1:+62080445 Msa1028880:CDS
GTCACATGTTGTACATCTGT+TGG 0.530235 7_1:-62081115 None:intergenic
TCACATGTTGTACATCTGTT+GGG 0.533947 7_1:-62081114 None:intergenic
GTTGTTATATCTCCATTCAA+GGG 0.534536 7_1:+62079418 Msa1028880:five_prime_UTR
GAGATACAACCAGCTGAGAA+AGG 0.537814 7_1:-62079544 None:intergenic
TCTGAGGCTAGTGTTGCTGT+TGG 0.544954 7_1:+62079565 Msa1028880:five_prime_UTR
TGTTTAATAGAGAATGGAAA+AGG 0.546481 7_1:-62080097 None:intergenic
AAAGTATGAAGAATTCTTTG+AGG 0.549357 7_1:+62080392 Msa1028880:CDS
ACATGTGACACACATTGGTT+GGG 0.559436 7_1:+62081129 Msa1028880:CDS
TCATGACCCAATGAGGGGAT+GGG 0.567190 7_1:+62081177 Msa1028880:CDS
TACTAGCTAAATAAAACTAA+GGG 0.567349 7_1:-62079735 None:intergenic
CTCATACCTATACTTGTTTG+GGG 0.569563 7_1:-62080134 None:intergenic
GATTCTCTCCCACGGTACAT+CGG 0.569850 7_1:+62079851 Msa1028880:five_prime_UTR
GAGAGAAGATCCGAGTCCGT+TGG 0.570167 7_1:+62079962 Msa1028880:five_prime_UTR
CATACAATAAATTTGACCAT+CGG 0.571124 7_1:-62080061 None:intergenic
TCAACTTCATCCAACGGACT+CGG 0.574514 7_1:-62079972 None:intergenic
TGCAAGAAAGTGTTGCCATA+TGG 0.578020 7_1:+62079892 Msa1028880:five_prime_UTR
CTCAGCTGGTTGTATCTCTG+AGG 0.578716 7_1:+62079549 Msa1028880:five_prime_UTR
ATAGAAGGCATGATGTTGAT+GGG 0.591363 7_1:-62081268 None:intergenic
AACTTGTTGAAGGATAGGTT+AGG 0.593453 7_1:-62080436 None:intergenic
GCTACAGAGAGAAGCTCAGG+AGG 0.604067 7_1:-62081211 None:intergenic
AATTGCAGTGGAGAAAGAAG+AGG 0.604469 7_1:+62081054 Msa1028880:intron
GAAAGTGTGATTCATTGTTG+TGG 0.607215 7_1:+62081354 Msa1028880:three_prime_UTR
TGGGTCATGAGCAGCACATG+AGG 0.609467 7_1:-62081164 None:intergenic
GTGACACACATTGGTTGGGA+TGG 0.614285 7_1:+62081133 Msa1028880:CDS
TGCTGCTCATGACCCAATGA+GGG 0.614602 7_1:+62081171 Msa1028880:CDS
TAATATAGTAAGACACACAT+GGG 0.623349 7_1:-62079348 None:intergenic
TATCAATCAACTTCATCCAA+CGG 0.629915 7_1:-62079978 None:intergenic
GTATGAGACAGAGAATGGAA+AGG 0.630032 7_1:+62079509 Msa1028880:five_prime_UTR
TTTGTTGCACCGATGTACCG+TGG 0.630594 7_1:-62079860 None:intergenic
AGAAGGATCTAAAGGAGTCG+AGG 0.632435 7_1:+62080348 Msa1028880:CDS
TTGTTGCACCGATGTACCGT+GGG 0.632487 7_1:-62079859 None:intergenic
AAGAGACTTATTGCATCATG+TGG 0.639239 7_1:-62079631 None:intergenic
GTGCTGCTCATGACCCAATG+AGG 0.658635 7_1:+62081170 Msa1028880:CDS
ACAAGAAGATGAAATGGACA+TGG 0.663165 7_1:+62081081 Msa1028880:CDS
TCATACCTATACTTGTTTGG+GGG 0.674696 7_1:-62080133 None:intergenic
AAGAAAGTGTTGCCATATGG+TGG 0.682164 7_1:+62079895 Msa1028880:five_prime_UTR
AGGACTTGGATTCTCTCCCA+CGG 0.683139 7_1:+62079843 Msa1028880:five_prime_UTR
ATAATATAGTAAGACACACA+TGG 0.703222 7_1:-62079349 None:intergenic
GCTGCTCATGACCCAATGAG+GGG 0.751010 7_1:+62081172 Msa1028880:CDS
GTACAACATGTGACACACAT+TGG 0.753481 7_1:+62081124 Msa1028880:CDS
AATATAGTAAGACACACATG+GGG 0.770159 7_1:-62079347 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTCTAAAAATGTTTATTTA+GGG - chr7_1:62080664-62080683 None:intergenic 10.0%
!! TCTTTGTAAATAAAAATATA+TGG + chr7_1:62080987-62081006 Msa1028880:intron 10.0%
!!! ATTCTAAAAATGTTTATTTA+GGG - chr7_1:62080664-62080683 None:intergenic 10.0%
!! TCTTTGTAAATAAAAATATA+TGG + chr7_1:62080987-62081006 Msa1028880:intron 10.0%
!! ATATCATTAATGAATTAGTT+TGG - chr7_1:62079258-62079277 None:intergenic 15.0%
!! AATATATGTTTAATAGAGAA+TGG - chr7_1:62080106-62080125 None:intergenic 15.0%
!!! TTTTTCTTTTTTGAAAGTTA+CGG - chr7_1:62080216-62080235 None:intergenic 15.0%
!!! TTCTCTAATTTTTAATTAGT+TGG + chr7_1:62080247-62080266 Msa1028880:five_prime_UTR 15.0%
!!! CATTCTAAAAATGTTTATTT+AGG - chr7_1:62080665-62080684 None:intergenic 15.0%
!! CATAATAAAAATAAAACTGT+AGG + chr7_1:62080940-62080959 Msa1028880:intron 15.0%
!! ATATCATTAATGAATTAGTT+TGG - chr7_1:62079258-62079277 None:intergenic 15.0%
!! AATATATGTTTAATAGAGAA+TGG - chr7_1:62080106-62080125 None:intergenic 15.0%
!!! TTTTTCTTTTTTGAAAGTTA+CGG - chr7_1:62080216-62080235 None:intergenic 15.0%
!!! TTCTCTAATTTTTAATTAGT+TGG + chr7_1:62080247-62080266 Msa1028880:five_prime_UTR 15.0%
!!! CATTCTAAAAATGTTTATTT+AGG - chr7_1:62080665-62080684 None:intergenic 15.0%
!! CATAATAAAAATAAAACTGT+AGG + chr7_1:62080940-62080959 Msa1028880:intron 15.0%
!! TACTAGCTAAATAAAACTAA+GGG - chr7_1:62079738-62079757 None:intergenic 20.0%
!! TTACTAGCTAAATAAAACTA+AGG - chr7_1:62079739-62079758 None:intergenic 20.0%
!! ATGTATAAAAAAAAATGTCG+TGG + chr7_1:62080160-62080179 Msa1028880:five_prime_UTR 20.0%
!! TGTATAAAAAAAAATGTCGT+GGG + chr7_1:62080161-62080180 Msa1028880:five_prime_UTR 20.0%
!!! ATAAAATTGGGTTTAAGATA+AGG - chr7_1:62080807-62080826 None:intergenic 20.0%
!! AAATTTATGTTTAATTGCAG+TGG + chr7_1:62081042-62081061 Msa1028880:intron 20.0%
!! TACTAGCTAAATAAAACTAA+GGG - chr7_1:62079738-62079757 None:intergenic 20.0%
!! TTACTAGCTAAATAAAACTA+AGG - chr7_1:62079739-62079758 None:intergenic 20.0%
!! ATGTATAAAAAAAAATGTCG+TGG + chr7_1:62080160-62080179 Msa1028880:five_prime_UTR 20.0%
!! TGTATAAAAAAAAATGTCGT+GGG + chr7_1:62080161-62080180 Msa1028880:five_prime_UTR 20.0%
!!! ATAAAATTGGGTTTAAGATA+AGG - chr7_1:62080807-62080826 None:intergenic 20.0%
!! AAATTTATGTTTAATTGCAG+TGG + chr7_1:62081042-62081061 Msa1028880:intron 20.0%
! TAATATAGTAAGACACACAT+GGG - chr7_1:62079351-62079370 None:intergenic 25.0%
! ATAATATAGTAAGACACACA+TGG - chr7_1:62079352-62079371 None:intergenic 25.0%
! GATATCATAGTAAAAGAGAT+AGG - chr7_1:62079657-62079676 None:intergenic 25.0%
! TGAATTTAGTCATTCGATAA+AGG + chr7_1:62079823-62079842 Msa1028880:five_prime_UTR 25.0%
! ATACAATAAATTTGACCATC+GGG - chr7_1:62080063-62080082 None:intergenic 25.0%
! CATACAATAAATTTGACCAT+CGG - chr7_1:62080064-62080083 None:intergenic 25.0%
! TGTTTAATAGAGAATGGAAA+AGG - chr7_1:62080100-62080119 None:intergenic 25.0%
! GTATAAAAAAAAATGTCGTG+GGG + chr7_1:62080162-62080181 Msa1028880:five_prime_UTR 25.0%
! GATGATATGATAAGATTAGA+AGG + chr7_1:62080331-62080350 Msa1028880:exon 25.0%
! ATAAGATTAGAAGGATCTAA+AGG + chr7_1:62080340-62080359 Msa1028880:CDS 25.0%
! AAAGTATGAAGAATTCTTTG+AGG + chr7_1:62080392-62080411 Msa1028880:CDS 25.0%
!! AAGAACTTTTCTCAATTGTT+TGG + chr7_1:62080472-62080491 Msa1028880:CDS 25.0%
!! GTTTTCTCATACTAATTTTG+TGG + chr7_1:62080513-62080532 Msa1028880:intron 25.0%
! GAACGAAATAAAAACAAACA+AGG - chr7_1:62080602-62080621 None:intergenic 25.0%
!! TTTAAGATAAGGAAAGTTAG+AGG - chr7_1:62080796-62080815 None:intergenic 25.0%
!! TAAACCCAATTTTATAGAGT+CGG + chr7_1:62080812-62080831 Msa1028880:intron 25.0%
!! ATGGAAGTCTTAATTTTTCA+TGG + chr7_1:62081006-62081025 Msa1028880:intron 25.0%
! TCAATTAATCAAGCAATAGA+AGG - chr7_1:62081286-62081305 None:intergenic 25.0%
! TAATATAGTAAGACACACAT+GGG - chr7_1:62079351-62079370 None:intergenic 25.0%
! ATAATATAGTAAGACACACA+TGG - chr7_1:62079352-62079371 None:intergenic 25.0%
! GATATCATAGTAAAAGAGAT+AGG - chr7_1:62079657-62079676 None:intergenic 25.0%
! TGAATTTAGTCATTCGATAA+AGG + chr7_1:62079823-62079842 Msa1028880:five_prime_UTR 25.0%
! ATACAATAAATTTGACCATC+GGG - chr7_1:62080063-62080082 None:intergenic 25.0%
! CATACAATAAATTTGACCAT+CGG - chr7_1:62080064-62080083 None:intergenic 25.0%
! TGTTTAATAGAGAATGGAAA+AGG - chr7_1:62080100-62080119 None:intergenic 25.0%
! GTATAAAAAAAAATGTCGTG+GGG + chr7_1:62080162-62080181 Msa1028880:five_prime_UTR 25.0%
! GATGATATGATAAGATTAGA+AGG + chr7_1:62080331-62080350 Msa1028880:exon 25.0%
! ATAAGATTAGAAGGATCTAA+AGG + chr7_1:62080340-62080359 Msa1028880:CDS 25.0%
! AAAGTATGAAGAATTCTTTG+AGG + chr7_1:62080392-62080411 Msa1028880:CDS 25.0%
!! AAGAACTTTTCTCAATTGTT+TGG + chr7_1:62080472-62080491 Msa1028880:CDS 25.0%
!! GTTTTCTCATACTAATTTTG+TGG + chr7_1:62080513-62080532 Msa1028880:intron 25.0%
! GAACGAAATAAAAACAAACA+AGG - chr7_1:62080602-62080621 None:intergenic 25.0%
!! TTTAAGATAAGGAAAGTTAG+AGG - chr7_1:62080796-62080815 None:intergenic 25.0%
!! TAAACCCAATTTTATAGAGT+CGG + chr7_1:62080812-62080831 Msa1028880:intron 25.0%
!! ATGGAAGTCTTAATTTTTCA+TGG + chr7_1:62081006-62081025 Msa1028880:intron 25.0%
! TCAATTAATCAAGCAATAGA+AGG - chr7_1:62081286-62081305 None:intergenic 25.0%
! AATTAGTTTGGTGAGTGAAA+GGG - chr7_1:62079246-62079265 None:intergenic 30.0%
AATATAGTAAGACACACATG+GGG - chr7_1:62079350-62079369 None:intergenic 30.0%
AGTTGTTATATCTCCATTCA+AGG + chr7_1:62079417-62079436 Msa1028880:five_prime_UTR 30.0%
GTTGTTATATCTCCATTCAA+GGG + chr7_1:62079418-62079437 Msa1028880:five_prime_UTR 30.0%
GTGAATATCTCAATTGGAAT+TGG - chr7_1:62079476-62079495 None:intergenic 30.0%
TGATAGGTGAATATCTCAAT+TGG - chr7_1:62079482-62079501 None:intergenic 30.0%
GTCTCATACTTTCTTATGAT+AGG - chr7_1:62079498-62079517 None:intergenic 30.0%
TATCAATCAACTTCATCCAA+CGG - chr7_1:62079981-62080000 None:intergenic 30.0%
TCTCATACCTATACTTGTTT+GGG - chr7_1:62080138-62080157 None:intergenic 30.0%
TTCTCATACCTATACTTGTT+TGG - chr7_1:62080139-62080158 None:intergenic 30.0%
CTCGATCATCTCAATATATA+AGG + chr7_1:62080696-62080715 Msa1028880:intron 30.0%
TCATCTCAATATATAAGGTG+TGG + chr7_1:62080701-62080720 Msa1028880:intron 30.0%
GAAGAAATACGTGTCAATAA+TGG + chr7_1:62080736-62080755 Msa1028880:intron 30.0%
ATGAAATGGACATGGAAATA+GGG + chr7_1:62081089-62081108 Msa1028880:CDS 30.0%
! AATTAGTTTGGTGAGTGAAA+GGG - chr7_1:62079246-62079265 None:intergenic 30.0%
AATATAGTAAGACACACATG+GGG - chr7_1:62079350-62079369 None:intergenic 30.0%
AGTTGTTATATCTCCATTCA+AGG + chr7_1:62079417-62079436 Msa1028880:five_prime_UTR 30.0%
GTTGTTATATCTCCATTCAA+GGG + chr7_1:62079418-62079437 Msa1028880:five_prime_UTR 30.0%
GTGAATATCTCAATTGGAAT+TGG - chr7_1:62079476-62079495 None:intergenic 30.0%
TGATAGGTGAATATCTCAAT+TGG - chr7_1:62079482-62079501 None:intergenic 30.0%
GTCTCATACTTTCTTATGAT+AGG - chr7_1:62079498-62079517 None:intergenic 30.0%
TATCAATCAACTTCATCCAA+CGG - chr7_1:62079981-62080000 None:intergenic 30.0%
TCTCATACCTATACTTGTTT+GGG - chr7_1:62080138-62080157 None:intergenic 30.0%
TTCTCATACCTATACTTGTT+TGG - chr7_1:62080139-62080158 None:intergenic 30.0%
CTCGATCATCTCAATATATA+AGG + chr7_1:62080696-62080715 Msa1028880:intron 30.0%
TCATCTCAATATATAAGGTG+TGG + chr7_1:62080701-62080720 Msa1028880:intron 30.0%
GAAGAAATACGTGTCAATAA+TGG + chr7_1:62080736-62080755 Msa1028880:intron 30.0%
ATGAAATGGACATGGAAATA+GGG + chr7_1:62081089-62081108 Msa1028880:CDS 30.0%
! GAATTAGTTTGGTGAGTGAA+AGG - chr7_1:62079247-62079266 None:intergenic 35.0%
CAAAAAATGCAACCCTTGAA+TGG - chr7_1:62079433-62079452 None:intergenic 35.0%
!!! CATTCAAGGGTTGCATTTTT+TGG + chr7_1:62079431-62079450 Msa1028880:five_prime_UTR 35.0%
! AGAAAGTATGAGACAGAGAA+TGG + chr7_1:62079504-62079523 Msa1028880:five_prime_UTR 35.0%
AAGAGACTTATTGCATCATG+TGG - chr7_1:62079634-62079653 None:intergenic 35.0%
TAGTCATTCGATAAAGGACT+TGG + chr7_1:62079829-62079848 Msa1028880:five_prime_UTR 35.0%
TATGACAACATACCACCATA+TGG - chr7_1:62079910-62079929 None:intergenic 35.0%
TCATACCTATACTTGTTTGG+GGG - chr7_1:62080136-62080155 None:intergenic 35.0%
CTCATACCTATACTTGTTTG+GGG - chr7_1:62080137-62080156 None:intergenic 35.0%
!! AACTTGTTGAAGGATAGGTT+AGG - chr7_1:62080439-62080458 None:intergenic 35.0%
!! TGAACAACTTGTTGAAGGAT+AGG - chr7_1:62080444-62080463 None:intergenic 35.0%
TCCTTCAACAAGTTGTTCAA+AGG + chr7_1:62080445-62080464 Msa1028880:CDS 35.0%
TTGAGATGATCGAGACTAAA+AGG - chr7_1:62080690-62080709 None:intergenic 35.0%
ATAAGGAAAGTTAGAGGTAG+GGG - chr7_1:62080790-62080809 None:intergenic 35.0%
GATAAGGAAAGTTAGAGGTA+GGG - chr7_1:62080791-62080810 None:intergenic 35.0%
AGATAAGGAAAGTTAGAGGT+AGG - chr7_1:62080792-62080811 None:intergenic 35.0%
CACTCCGACTCTATAAAATT+GGG - chr7_1:62080819-62080838 None:intergenic 35.0%
GGACTTACAAGAAGATGAAA+TGG + chr7_1:62081075-62081094 Msa1028880:CDS 35.0%
ACAAGAAGATGAAATGGACA+TGG + chr7_1:62081081-62081100 Msa1028880:CDS 35.0%
GATGAAATGGACATGGAAAT+AGG + chr7_1:62081088-62081107 Msa1028880:CDS 35.0%
TCACATGTTGTACATCTGTT+GGG - chr7_1:62081117-62081136 None:intergenic 35.0%
!! TTTTGGCTGTAAAGATTGAG+AGG - chr7_1:62081236-62081255 None:intergenic 35.0%
! ATGGGAGATGTTTCATGTTT+TGG - chr7_1:62081253-62081272 None:intergenic 35.0%
! ATAGAAGGCATGATGTTGAT+GGG - chr7_1:62081271-62081290 None:intergenic 35.0%
! AATAGAAGGCATGATGTTGA+TGG - chr7_1:62081272-62081291 None:intergenic 35.0%
! GAAAGTGTGATTCATTGTTG+TGG + chr7_1:62081354-62081373 Msa1028880:three_prime_UTR 35.0%
! GAATTAGTTTGGTGAGTGAA+AGG - chr7_1:62079247-62079266 None:intergenic 35.0%
CAAAAAATGCAACCCTTGAA+TGG - chr7_1:62079433-62079452 None:intergenic 35.0%
!!! CATTCAAGGGTTGCATTTTT+TGG + chr7_1:62079431-62079450 Msa1028880:five_prime_UTR 35.0%
! AGAAAGTATGAGACAGAGAA+TGG + chr7_1:62079504-62079523 Msa1028880:five_prime_UTR 35.0%
AAGAGACTTATTGCATCATG+TGG - chr7_1:62079634-62079653 None:intergenic 35.0%
TAGTCATTCGATAAAGGACT+TGG + chr7_1:62079829-62079848 Msa1028880:five_prime_UTR 35.0%
TATGACAACATACCACCATA+TGG - chr7_1:62079910-62079929 None:intergenic 35.0%
TCATACCTATACTTGTTTGG+GGG - chr7_1:62080136-62080155 None:intergenic 35.0%
CTCATACCTATACTTGTTTG+GGG - chr7_1:62080137-62080156 None:intergenic 35.0%
!! AACTTGTTGAAGGATAGGTT+AGG - chr7_1:62080439-62080458 None:intergenic 35.0%
!! TGAACAACTTGTTGAAGGAT+AGG - chr7_1:62080444-62080463 None:intergenic 35.0%
TCCTTCAACAAGTTGTTCAA+AGG + chr7_1:62080445-62080464 Msa1028880:CDS 35.0%
TTGAGATGATCGAGACTAAA+AGG - chr7_1:62080690-62080709 None:intergenic 35.0%
ATAAGGAAAGTTAGAGGTAG+GGG - chr7_1:62080790-62080809 None:intergenic 35.0%
GATAAGGAAAGTTAGAGGTA+GGG - chr7_1:62080791-62080810 None:intergenic 35.0%
AGATAAGGAAAGTTAGAGGT+AGG - chr7_1:62080792-62080811 None:intergenic 35.0%
CACTCCGACTCTATAAAATT+GGG - chr7_1:62080819-62080838 None:intergenic 35.0%
GGACTTACAAGAAGATGAAA+TGG + chr7_1:62081075-62081094 Msa1028880:CDS 35.0%
ACAAGAAGATGAAATGGACA+TGG + chr7_1:62081081-62081100 Msa1028880:CDS 35.0%
GATGAAATGGACATGGAAAT+AGG + chr7_1:62081088-62081107 Msa1028880:CDS 35.0%
TCACATGTTGTACATCTGTT+GGG - chr7_1:62081117-62081136 None:intergenic 35.0%
!! TTTTGGCTGTAAAGATTGAG+AGG - chr7_1:62081236-62081255 None:intergenic 35.0%
! ATGGGAGATGTTTCATGTTT+TGG - chr7_1:62081253-62081272 None:intergenic 35.0%
! ATAGAAGGCATGATGTTGAT+GGG - chr7_1:62081271-62081290 None:intergenic 35.0%
! AATAGAAGGCATGATGTTGA+TGG - chr7_1:62081272-62081291 None:intergenic 35.0%
! GAAAGTGTGATTCATTGTTG+TGG + chr7_1:62081354-62081373 Msa1028880:three_prime_UTR 35.0%
!!! TCAAGGGTTGCATTTTTTGG+TGG + chr7_1:62079434-62079453 Msa1028880:five_prime_UTR 40.0%
GTATGAGACAGAGAATGGAA+AGG + chr7_1:62079509-62079528 Msa1028880:five_prime_UTR 40.0%
!! CTGCAGGTTTTGATCTTCTT+GGG - chr7_1:62079600-62079619 None:intergenic 40.0%
!! TCTGCAGGTTTTGATCTTCT+TGG - chr7_1:62079601-62079620 None:intergenic 40.0%
!! TGCAAGAAAGTGTTGCCATA+TGG + chr7_1:62079892-62079911 Msa1028880:five_prime_UTR 40.0%
!! AAGAAAGTGTTGCCATATGG+TGG + chr7_1:62079895-62079914 Msa1028880:five_prime_UTR 40.0%
!!! AACGATGTATTTTGACCCGA+TGG + chr7_1:62080045-62080064 Msa1028880:five_prime_UTR 40.0%
TTCTTCCCCCAAACAAGTAT+AGG + chr7_1:62080128-62080147 Msa1028880:five_prime_UTR 40.0%
TTGAAGGATAGGTTAGGCTT+TGG - chr7_1:62080433-62080452 None:intergenic 40.0%
!! GCCTTTGAACAACTTGTTGA+AGG - chr7_1:62080449-62080468 None:intergenic 40.0%
AAAGTTAGAGGTAGGGGAAA+TGG - chr7_1:62080784-62080803 None:intergenic 40.0%
CCACTCCGACTCTATAAAAT+TGG - chr7_1:62080820-62080839 None:intergenic 40.0%
! CCAATTTTATAGAGTCGGAG+TGG + chr7_1:62080817-62080836 Msa1028880:intron 40.0%
AATTGCAGTGGAGAAAGAAG+AGG + chr7_1:62081054-62081073 Msa1028880:intron 40.0%
GTCACATGTTGTACATCTGT+TGG - chr7_1:62081118-62081137 None:intergenic 40.0%
GTACAACATGTGACACACAT+TGG + chr7_1:62081124-62081143 Msa1028880:CDS 40.0%
AACATGTGACACACATTGGT+TGG + chr7_1:62081128-62081147 Msa1028880:CDS 40.0%
! ACATGTGACACACATTGGTT+GGG + chr7_1:62081129-62081148 Msa1028880:CDS 40.0%
!!! TCAAGGGTTGCATTTTTTGG+TGG + chr7_1:62079434-62079453 Msa1028880:five_prime_UTR 40.0%
GTATGAGACAGAGAATGGAA+AGG + chr7_1:62079509-62079528 Msa1028880:five_prime_UTR 40.0%
!! CTGCAGGTTTTGATCTTCTT+GGG - chr7_1:62079600-62079619 None:intergenic 40.0%
!! TCTGCAGGTTTTGATCTTCT+TGG - chr7_1:62079601-62079620 None:intergenic 40.0%
!! TGCAAGAAAGTGTTGCCATA+TGG + chr7_1:62079892-62079911 Msa1028880:five_prime_UTR 40.0%
!! AAGAAAGTGTTGCCATATGG+TGG + chr7_1:62079895-62079914 Msa1028880:five_prime_UTR 40.0%
!!! AACGATGTATTTTGACCCGA+TGG + chr7_1:62080045-62080064 Msa1028880:five_prime_UTR 40.0%
TTCTTCCCCCAAACAAGTAT+AGG + chr7_1:62080128-62080147 Msa1028880:five_prime_UTR 40.0%
TTGAAGGATAGGTTAGGCTT+TGG - chr7_1:62080433-62080452 None:intergenic 40.0%
!! GCCTTTGAACAACTTGTTGA+AGG - chr7_1:62080449-62080468 None:intergenic 40.0%
AAAGTTAGAGGTAGGGGAAA+TGG - chr7_1:62080784-62080803 None:intergenic 40.0%
CCACTCCGACTCTATAAAAT+TGG - chr7_1:62080820-62080839 None:intergenic 40.0%
! CCAATTTTATAGAGTCGGAG+TGG + chr7_1:62080817-62080836 Msa1028880:intron 40.0%
AATTGCAGTGGAGAAAGAAG+AGG + chr7_1:62081054-62081073 Msa1028880:intron 40.0%
GTCACATGTTGTACATCTGT+TGG - chr7_1:62081118-62081137 None:intergenic 40.0%
GTACAACATGTGACACACAT+TGG + chr7_1:62081124-62081143 Msa1028880:CDS 40.0%
AACATGTGACACACATTGGT+TGG + chr7_1:62081128-62081147 Msa1028880:CDS 40.0%
! ACATGTGACACACATTGGTT+GGG + chr7_1:62081129-62081148 Msa1028880:CDS 40.0%
GTAAGACACACATGGGGATA+GGG - chr7_1:62079344-62079363 None:intergenic 45.0%
AGTAAGACACACATGGGGAT+AGG - chr7_1:62079345-62079364 None:intergenic 45.0%
GTCATTCTTCCTTTCTCAGC+TGG + chr7_1:62079535-62079554 Msa1028880:five_prime_UTR 45.0%
GAGATACAACCAGCTGAGAA+AGG - chr7_1:62079547-62079566 None:intergenic 45.0%
!! GGTTTTGATCTTCTTGGGTG+TGG - chr7_1:62079595-62079614 None:intergenic 45.0%
! TGTGGTGAATTAGTCTCTGC+AGG - chr7_1:62079616-62079635 None:intergenic 45.0%
! TCAACTTCATCCAACGGACT+CGG - chr7_1:62079975-62079994 None:intergenic 45.0%
AGAAGGATCTAAAGGAGTCG+AGG + chr7_1:62080348-62080367 Msa1028880:CDS 45.0%
GAGGATTCAGAGACTTTGTC+TGG + chr7_1:62080367-62080386 Msa1028880:CDS 45.0%
GTAAGACACACATGGGGATA+GGG - chr7_1:62079344-62079363 None:intergenic 45.0%
AGTAAGACACACATGGGGAT+AGG - chr7_1:62079345-62079364 None:intergenic 45.0%
GTCATTCTTCCTTTCTCAGC+TGG + chr7_1:62079535-62079554 Msa1028880:five_prime_UTR 45.0%
GAGATACAACCAGCTGAGAA+AGG - chr7_1:62079547-62079566 None:intergenic 45.0%
!! GGTTTTGATCTTCTTGGGTG+TGG - chr7_1:62079595-62079614 None:intergenic 45.0%
! TGTGGTGAATTAGTCTCTGC+AGG - chr7_1:62079616-62079635 None:intergenic 45.0%
! TCAACTTCATCCAACGGACT+CGG - chr7_1:62079975-62079994 None:intergenic 45.0%
AGAAGGATCTAAAGGAGTCG+AGG + chr7_1:62080348-62080367 Msa1028880:CDS 45.0%
GAGGATTCAGAGACTTTGTC+TGG + chr7_1:62080367-62080386 Msa1028880:CDS 45.0%
!!! ATTGTATTTTAAATTTTATT+TGG + chr7_1:62080008-62080027 Msa1028880:five_prime_UTR 5.0%
!! AAAAGATATAAATTAATATA+TGG - chr7_1:62080540-62080559 None:intergenic 5.0%
!!! ATTGTATTTTAAATTTTATT+TGG + chr7_1:62080008-62080027 Msa1028880:five_prime_UTR 5.0%
!! AAAAGATATAAATTAATATA+TGG - chr7_1:62080540-62080559 None:intergenic 5.0%
! TGGGGATAGGGTACTCTCTT+AGG - chr7_1:62079332-62079351 None:intergenic 50.0%
CTCAGCTGGTTGTATCTCTG+AGG + chr7_1:62079549-62079568 Msa1028880:five_prime_UTR 50.0%
! TCTGAGGCTAGTGTTGCTGT+TGG + chr7_1:62079565-62079584 Msa1028880:five_prime_UTR 50.0%
AGGACTTGGATTCTCTCCCA+CGG + chr7_1:62079843-62079862 Msa1028880:five_prime_UTR 50.0%
GATTCTCTCCCACGGTACAT+CGG + chr7_1:62079851-62079870 Msa1028880:five_prime_UTR 50.0%
! TTGTTGCACCGATGTACCGT+GGG - chr7_1:62079862-62079881 None:intergenic 50.0%
! TTTGTTGCACCGATGTACCG+TGG - chr7_1:62079863-62079882 None:intergenic 50.0%
TTGGTGAGTATGCAAGCGTG+TGG + chr7_1:62080491-62080510 Msa1028880:intron 50.0%
AGTCGGAGTGGTGAGAAGAT+GGG + chr7_1:62080829-62080848 Msa1028880:intron 50.0%
! GTGACACACATTGGTTGGGA+TGG + chr7_1:62081133-62081152 Msa1028880:CDS 50.0%
TGCTGCTCATGACCCAATGA+GGG + chr7_1:62081171-62081190 Msa1028880:CDS 50.0%
TCATGACCCAATGAGGGGAT+GGG + chr7_1:62081177-62081196 Msa1028880:CDS 50.0%
GAGAATCCCATCCCCTCATT+GGG - chr7_1:62081186-62081205 None:intergenic 50.0%
AGAGAATCCCATCCCCTCAT+TGG - chr7_1:62081187-62081206 None:intergenic 50.0%
! TGGGGATAGGGTACTCTCTT+AGG - chr7_1:62079332-62079351 None:intergenic 50.0%
CTCAGCTGGTTGTATCTCTG+AGG + chr7_1:62079549-62079568 Msa1028880:five_prime_UTR 50.0%
! TCTGAGGCTAGTGTTGCTGT+TGG + chr7_1:62079565-62079584 Msa1028880:five_prime_UTR 50.0%
AGGACTTGGATTCTCTCCCA+CGG + chr7_1:62079843-62079862 Msa1028880:five_prime_UTR 50.0%
GATTCTCTCCCACGGTACAT+CGG + chr7_1:62079851-62079870 Msa1028880:five_prime_UTR 50.0%
! TTGTTGCACCGATGTACCGT+GGG - chr7_1:62079862-62079881 None:intergenic 50.0%
! TTTGTTGCACCGATGTACCG+TGG - chr7_1:62079863-62079882 None:intergenic 50.0%
TTGGTGAGTATGCAAGCGTG+TGG + chr7_1:62080491-62080510 Msa1028880:intron 50.0%
AGTCGGAGTGGTGAGAAGAT+GGG + chr7_1:62080829-62080848 Msa1028880:intron 50.0%
! GTGACACACATTGGTTGGGA+TGG + chr7_1:62081133-62081152 Msa1028880:CDS 50.0%
TGCTGCTCATGACCCAATGA+GGG + chr7_1:62081171-62081190 Msa1028880:CDS 50.0%
TCATGACCCAATGAGGGGAT+GGG + chr7_1:62081177-62081196 Msa1028880:CDS 50.0%
GAGAATCCCATCCCCTCATT+GGG - chr7_1:62081186-62081205 None:intergenic 50.0%
AGAGAATCCCATCCCCTCAT+TGG - chr7_1:62081187-62081206 None:intergenic 50.0%
GAGAGAAGATCCGAGTCCGT+TGG + chr7_1:62079962-62079981 Msa1028880:five_prime_UTR 55.0%
GAGTCGGAGTGGTGAGAAGA+TGG + chr7_1:62080828-62080847 Msa1028880:intron 55.0%
TGGGTCATGAGCAGCACATG+AGG - chr7_1:62081167-62081186 None:intergenic 55.0%
! GTGCTGCTCATGACCCAATG+AGG + chr7_1:62081170-62081189 Msa1028880:CDS 55.0%
GCTGCTCATGACCCAATGAG+GGG + chr7_1:62081172-62081191 Msa1028880:CDS 55.0%
CTCATGACCCAATGAGGGGA+TGG + chr7_1:62081176-62081195 Msa1028880:CDS 55.0%
GCTACAGAGAGAAGCTCAGG+AGG - chr7_1:62081214-62081233 None:intergenic 55.0%
GAGGCTACAGAGAGAAGCTC+AGG - chr7_1:62081217-62081236 None:intergenic 55.0%
GAGAGAAGATCCGAGTCCGT+TGG + chr7_1:62079962-62079981 Msa1028880:five_prime_UTR 55.0%
GAGTCGGAGTGGTGAGAAGA+TGG + chr7_1:62080828-62080847 Msa1028880:intron 55.0%
TGGGTCATGAGCAGCACATG+AGG - chr7_1:62081167-62081186 None:intergenic 55.0%
! GTGCTGCTCATGACCCAATG+AGG + chr7_1:62081170-62081189 Msa1028880:CDS 55.0%
GCTGCTCATGACCCAATGAG+GGG + chr7_1:62081172-62081191 Msa1028880:CDS 55.0%
CTCATGACCCAATGAGGGGA+TGG + chr7_1:62081176-62081195 Msa1028880:CDS 55.0%
GCTACAGAGAGAAGCTCAGG+AGG - chr7_1:62081214-62081233 None:intergenic 55.0%
GAGGCTACAGAGAGAAGCTC+AGG - chr7_1:62081217-62081236 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 62079236 62081385 62079236 ID=Msa1028880;Name=Msa1028880
chr7_1 mRNA 62079236 62081385 62079236 ID=Msa1028880-mRNA-1;Parent=Msa1028880;Name=Msa1028880-mRNA-1;_AED=0.01;_eAED=0.01;_QI=1101|1|1|1|1|1|2|88|130
chr7_1 exon 62079236 62080493 62079236 ID=Msa1028880-mRNA-1:exon:13135;Parent=Msa1028880-mRNA-1
chr7_1 exon 62081062 62081385 62081062 ID=Msa1028880-mRNA-1:exon:13136;Parent=Msa1028880-mRNA-1
chr7_1 five_prime_UTR 62079236 62080336 62079236 ID=Msa1028880-mRNA-1:five_prime_utr;Parent=Msa1028880-mRNA-1
chr7_1 CDS 62080337 62080493 62080337 ID=Msa1028880-mRNA-1:cds;Parent=Msa1028880-mRNA-1
chr7_1 CDS 62081062 62081297 62081062 ID=Msa1028880-mRNA-1:cds;Parent=Msa1028880-mRNA-1
chr7_1 three_prime_UTR 62081298 62081385 62081298 ID=Msa1028880-mRNA-1:three_prime_utr;Parent=Msa1028880-mRNA-1
Gene Sequence

>Msa1028880

ATGATAAGATTAGAAGGATCTAAAGGAGTCGAGGATTCAGAGACTTTGTCTGGTGAAAGTATGAAGAATTCTTTGAGGTTACTTGATGTTGTTCCAAAGCCTAACCTATCCTTCAACAAGTTGTTCAAAGGCTTCAAGAACTTTTCTCAATTGTTTGTGGAGAAAGAAGAGGACTTACAAGAAGATGAAATGGACATGGAAATAGGGTGCCCAACAGATGTACAACATGTGACACACATTGGTTGGGATGGTGTTACAACCTCATGTGCTGCTCATGACCCAATGAGGGGATGGGATTCTCTCATTCCTCCTGAGCTTCTCTCTGTAGCCTCTCAATCTTTACAGCCAAAACATGAAACATCTCCCATCAACATCATGCCTTCTATTGCTTGA
Protein sequence

>Msa1028880

MIRLEGSKGVEDSETLSGESMKNSLRLLDVVPKPNLSFNKLFKGFKNFSQLFVEKEEDLQEDEMDMEIGCPTDVQHVTHIGWDGVTTSCAAHDPMRGWDSLIPPELLSVASQSLQPKHETSPINIMPSIA*