Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1068000 | XP_003624160.1 | 93.820 | 178 | 4 | 2 | 1 | 177 | 1 | 172 | 1.06e-114 | 333 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1068000 | sp|Q9FFD5|RIC4_ARATH | 46.875 | 160 | 63 | 6 | 1 | 158 | 1 | 140 | 9.38e-30 | 109 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1068000 | Q2HW10 | 93.820 | 178 | 4 | 2 | 1 | 177 | 1 | 172 | 5.05e-115 | 333 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0622460 | Msa1068000 | 0.909196 | 7.438214e-82 | -8.615850e-47 |
| Msa1028880 | Msa1068000 | 0.826973 | 2.021209e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1068000 | MtrunA17_Chr7g0249251 | 93.820 | 178 | 4 | 2 | 1 | 177 | 1 | 172 | 9.72e-119 | 333 |
| Msa1068000 | MtrunA17_Chr7g0221761 | 39.634 | 164 | 79 | 5 | 1 | 162 | 1 | 146 | 7.65e-28 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1068000 | AT5G16490.1 | 46.875 | 160 | 63 | 6 | 1 | 158 | 1 | 140 | 9.53e-31 | 109 |
| Msa1068000 | AT1G27380.4 | 35.065 | 154 | 74 | 4 | 1 | 135 | 1 | 147 | 1.33e-17 | 76.3 |
Find 58 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGGAGATGTTTCATGTTT+TGG | 0.253272 | 7_2:-62993633 | None:intergenic |
| GATGAAATGGACATGGAAAT+AGG | 0.297095 | 7_2:+62993471 | Msa1068000:CDS |
| GTCATTCTTCCTTTCTCAGC+TGG | 0.335866 | 7_2:+62991914 | Msa1068000:CDS |
| TGGGGATAGGGTACTCTCTT+AGG | 0.347139 | 7_2:-62991708 | None:intergenic |
| ATATCATTAATGAATTAGTT+TGG | 0.351066 | 7_2:-62991634 | None:intergenic |
| GTGAATATCTCAATTGGAAT+TGG | 0.354042 | 7_2:-62991852 | None:intergenic |
| TTGAAGGATAGGTTAGGCTT+TGG | 0.378556 | 7_2:-62992809 | None:intergenic |
| GATGATATGATAAGATTAGA+AGG | 0.379519 | 7_2:+62992710 | Msa1068000:intron |
| GGACTTAGAAGAAGATGAAA+TGG | 0.383098 | 7_2:+62993458 | Msa1068000:CDS |
| GTCTCATACTTTCTTATGAT+AGG | 0.392213 | 7_2:-62991874 | None:intergenic |
| AGAGAATCCCATCCCCTCAT+TGG | 0.414199 | 7_2:-62993567 | None:intergenic |
| TGATAGGTGAATATCTCAAT+TGG | 0.415950 | 7_2:-62991858 | None:intergenic |
| TCAATTAATCAAGCAATAGA+AGG | 0.417530 | 7_2:-62993666 | None:intergenic |
| GCCTTTGAACAACTTGTTGA+AGG | 0.426359 | 7_2:-62992825 | None:intergenic |
| ATGAAATGGACATGGAAATA+GGG | 0.448347 | 7_2:+62993472 | Msa1068000:CDS |
| GAGGATTCAGAGACTTTGTC+TGG | 0.450700 | 7_2:+62992746 | Msa1068000:CDS |
| AATAGAAGGCATGATGTTGA+TGG | 0.460773 | 7_2:-62993652 | None:intergenic |
| AACATGTGACACACATTGGT+TGG | 0.460995 | 7_2:+62993511 | Msa1068000:CDS |
| AGTTGTTATATCTCCATTCA+AGG | 0.469327 | 7_2:+62991796 | Msa1068000:five_prime_UTR |
| TGAACAACTTGTTGAAGGAT+AGG | 0.476710 | 7_2:-62992820 | None:intergenic |
| TGTGGTGAATTAGTCTCTGC+AGG | 0.479443 | 7_2:-62991992 | None:intergenic |
| AATTAGTTTGGTGAGTGAAA+GGG | 0.489867 | 7_2:-62991622 | None:intergenic |
| GAGAATCCCATCCCCTCATT+GGG | 0.490983 | 7_2:-62993566 | None:intergenic |
| ATAAGATTAGAAGGATCTAA+AGG | 0.496998 | 7_2:+62992719 | Msa1068000:CDS |
| GAATTAGTTTGGTGAGTGAA+AGG | 0.501822 | 7_2:-62991623 | None:intergenic |
| AGTAAGACACACATGGGGAT+AGG | 0.506123 | 7_2:-62991721 | None:intergenic |
| CTCATGACCCAATGAGGGGA+TGG | 0.511835 | 7_2:+62993559 | Msa1068000:CDS |
| GAGGCTACAGAGAGAAGCTC+AGG | 0.512955 | 7_2:-62993597 | None:intergenic |
| GTAAGACACACATGGGGATA+GGG | 0.521490 | 7_2:-62991720 | None:intergenic |
| AGAAAGTATGAGACAGAGAA+TGG | 0.521813 | 7_2:+62991883 | Msa1068000:exon |
| TCCTTCAACAAGTTGTTCAA+AGG | 0.523718 | 7_2:+62992824 | Msa1068000:CDS |
| GTCACATGTTGTACATCTGT+TGG | 0.530235 | 7_2:-62993498 | None:intergenic |
| TCACATGTTGTACATCTGTT+GGG | 0.533947 | 7_2:-62993497 | None:intergenic |
| GTTGTTATATCTCCATTCAA+GGG | 0.534536 | 7_2:+62991797 | Msa1068000:five_prime_UTR |
| GAGATACAACCAGCTGAGAA+AGG | 0.537814 | 7_2:-62991923 | None:intergenic |
| TCTGAGGCTAGTGTTGCTGT+TGG | 0.544954 | 7_2:+62991944 | Msa1068000:CDS |
| AAAGTATGAAGAATTCTTTG+AGG | 0.549357 | 7_2:+62992771 | Msa1068000:CDS |
| ACATGTGACACACATTGGTT+GGG | 0.559436 | 7_2:+62993512 | Msa1068000:CDS |
| TCATGACCCAATGAGGGGAT+GGG | 0.567190 | 7_2:+62993560 | Msa1068000:CDS |
| CTCAGCTGGTTGTATCTCTG+AGG | 0.578716 | 7_2:+62991928 | Msa1068000:CDS |
| ATAGAAGGCATGATGTTGAT+GGG | 0.591363 | 7_2:-62993651 | None:intergenic |
| AACTTGTTGAAGGATAGGTT+AGG | 0.593453 | 7_2:-62992815 | None:intergenic |
| GCTACAGAGAGAAGCTCAGG+AGG | 0.604067 | 7_2:-62993594 | None:intergenic |
| AATTGCAGTGGAGAAAGAAG+AGG | 0.604469 | 7_2:+62993437 | Msa1068000:intron |
| GAAAGTGTGATTCATTGTTG+TGG | 0.607215 | 7_2:+62993737 | Msa1068000:three_prime_UTR |
| TGGGTCATGAGCAGCACATG+AGG | 0.609467 | 7_2:-62993547 | None:intergenic |
| GTGACACACATTGGTTGGGA+TGG | 0.614285 | 7_2:+62993516 | Msa1068000:CDS |
| TGCTGCTCATGACCCAATGA+GGG | 0.614602 | 7_2:+62993554 | Msa1068000:CDS |
| TAATATAGTAAGACACACAT+GGG | 0.623349 | 7_2:-62991727 | None:intergenic |
| GTATGAGACAGAGAATGGAA+AGG | 0.630032 | 7_2:+62991888 | Msa1068000:exon |
| AGAAGAAGATGAAATGGACA+TGG | 0.630572 | 7_2:+62993464 | Msa1068000:CDS |
| AGAAGGATCTAAAGGAGTCG+AGG | 0.632435 | 7_2:+62992727 | Msa1068000:CDS |
| AAGAGACTTATTGCATCATG+TGG | 0.639239 | 7_2:-62992010 | None:intergenic |
| GTGCTGCTCATGACCCAATG+AGG | 0.658635 | 7_2:+62993553 | Msa1068000:CDS |
| ATAATATAGTAAGACACACA+TGG | 0.703222 | 7_2:-62991728 | None:intergenic |
| GCTGCTCATGACCCAATGAG+GGG | 0.751010 | 7_2:+62993555 | Msa1068000:CDS |
| GTACAACATGTGACACACAT+TGG | 0.753481 | 7_2:+62993507 | Msa1068000:CDS |
| AATATAGTAAGACACACATG+GGG | 0.770159 | 7_2:-62991726 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTGTATTTTAAATTTTATT+TGG | + | chr7_2:62992387-62992406 | Msa1068000:intron | 10.0% |
| !! | TAAAAATGTTTATTTAGTTA+GGG | - | chr7_2:62993043-62993062 | None:intergenic | 10.0% |
| !! | TCTTTGTAAATAAAAATATA+TGG | + | chr7_2:62993370-62993389 | Msa1068000:intron | 10.0% |
| !!! | CTTGTATTTTAAATTTTATT+TGG | + | chr7_2:62992387-62992406 | Msa1068000:intron | 10.0% |
| !! | TAAAAATGTTTATTTAGTTA+GGG | - | chr7_2:62993043-62993062 | None:intergenic | 10.0% |
| !! | TCTTTGTAAATAAAAATATA+TGG | + | chr7_2:62993370-62993389 | Msa1068000:intron | 10.0% |
| !! | ATATCATTAATGAATTAGTT+TGG | - | chr7_2:62991637-62991656 | None:intergenic | 15.0% |
| !! | AATATATGTTTAATAGAGAA+TGG | - | chr7_2:62992485-62992504 | None:intergenic | 15.0% |
| !!! | TTTTTCTTTTTTGAAAGTTA+CGG | - | chr7_2:62992595-62992614 | None:intergenic | 15.0% |
| !!! | TTCTCTAATTTTTAATTAGT+TGG | + | chr7_2:62992626-62992645 | Msa1068000:intron | 15.0% |
| !! | CTAAAAATGTTTATTTAGTT+AGG | - | chr7_2:62993044-62993063 | None:intergenic | 15.0% |
| !! | CATAATAAAAATAAAACTGT+AGG | + | chr7_2:62993323-62993342 | Msa1068000:intron | 15.0% |
| !! | ATATCATTAATGAATTAGTT+TGG | - | chr7_2:62991637-62991656 | None:intergenic | 15.0% |
| !! | AATATATGTTTAATAGAGAA+TGG | - | chr7_2:62992485-62992504 | None:intergenic | 15.0% |
| !!! | TTTTTCTTTTTTGAAAGTTA+CGG | - | chr7_2:62992595-62992614 | None:intergenic | 15.0% |
| !!! | TTCTCTAATTTTTAATTAGT+TGG | + | chr7_2:62992626-62992645 | Msa1068000:intron | 15.0% |
| !! | CTAAAAATGTTTATTTAGTT+AGG | - | chr7_2:62993044-62993063 | None:intergenic | 15.0% |
| !! | CATAATAAAAATAAAACTGT+AGG | + | chr7_2:62993323-62993342 | Msa1068000:intron | 15.0% |
| !! | TACTAGCTAAATAAAACTAA+GGG | - | chr7_2:62992117-62992136 | None:intergenic | 20.0% |
| !! | TTACTAGCTAAATAAAACTA+AGG | - | chr7_2:62992118-62992137 | None:intergenic | 20.0% |
| !! | ATGTATAAAAAAAAATGTCG+TGG | + | chr7_2:62992539-62992558 | Msa1068000:intron | 20.0% |
| !! | TGTATAAAAAAAAATGTCGT+GGG | + | chr7_2:62992540-62992559 | Msa1068000:intron | 20.0% |
| !!! | ATAAAATTGGGTTTAAGATA+AGG | - | chr7_2:62993190-62993209 | None:intergenic | 20.0% |
| !! | AAATTTATGTTTAATTGCAG+TGG | + | chr7_2:62993425-62993444 | Msa1068000:intron | 20.0% |
| !! | TACTAGCTAAATAAAACTAA+GGG | - | chr7_2:62992117-62992136 | None:intergenic | 20.0% |
| !! | TTACTAGCTAAATAAAACTA+AGG | - | chr7_2:62992118-62992137 | None:intergenic | 20.0% |
| !! | ATGTATAAAAAAAAATGTCG+TGG | + | chr7_2:62992539-62992558 | Msa1068000:intron | 20.0% |
| !! | TGTATAAAAAAAAATGTCGT+GGG | + | chr7_2:62992540-62992559 | Msa1068000:intron | 20.0% |
| !!! | ATAAAATTGGGTTTAAGATA+AGG | - | chr7_2:62993190-62993209 | None:intergenic | 20.0% |
| !! | AAATTTATGTTTAATTGCAG+TGG | + | chr7_2:62993425-62993444 | Msa1068000:intron | 20.0% |
| ! | TAATATAGTAAGACACACAT+GGG | - | chr7_2:62991730-62991749 | None:intergenic | 25.0% |
| ! | ATAATATAGTAAGACACACA+TGG | - | chr7_2:62991731-62991750 | None:intergenic | 25.0% |
| ! | TGAATTTAGTCATTCGATAA+AGG | + | chr7_2:62992202-62992221 | Msa1068000:intron | 25.0% |
| ! | ATACAATAAATTTGACCATC+GGG | - | chr7_2:62992442-62992461 | None:intergenic | 25.0% |
| ! | CATACAATAAATTTGACCAT+CGG | - | chr7_2:62992443-62992462 | None:intergenic | 25.0% |
| ! | TGTTTAATAGAGAATGGAAA+AGG | - | chr7_2:62992479-62992498 | None:intergenic | 25.0% |
| ! | GTATAAAAAAAAATGTCGTG+GGG | + | chr7_2:62992541-62992560 | Msa1068000:intron | 25.0% |
| ! | GATGATATGATAAGATTAGA+AGG | + | chr7_2:62992710-62992729 | Msa1068000:intron | 25.0% |
| ! | ATAAGATTAGAAGGATCTAA+AGG | + | chr7_2:62992719-62992738 | Msa1068000:CDS | 25.0% |
| ! | AAAGTATGAAGAATTCTTTG+AGG | + | chr7_2:62992771-62992790 | Msa1068000:CDS | 25.0% |
| !! | AAGAACTTTTCTCAATTGTT+TGG | + | chr7_2:62992851-62992870 | Msa1068000:CDS | 25.0% |
| !! | GTTTTCTCATACTAATTTTG+TGG | + | chr7_2:62992892-62992911 | Msa1068000:intron | 25.0% |
| ! | GAACGAAATAAAAACAAACA+AGG | - | chr7_2:62992981-62993000 | None:intergenic | 25.0% |
| !! | TTTAAGATAAGGAAAGTTAG+AGG | - | chr7_2:62993179-62993198 | None:intergenic | 25.0% |
| !! | TAAACCCAATTTTATAGAGT+CGG | + | chr7_2:62993195-62993214 | Msa1068000:intron | 25.0% |
| !! | ATGGAAGTCTTAATTTTTCA+TGG | + | chr7_2:62993389-62993408 | Msa1068000:intron | 25.0% |
| ! | TCAATTAATCAAGCAATAGA+AGG | - | chr7_2:62993669-62993688 | None:intergenic | 25.0% |
| ! | TAATATAGTAAGACACACAT+GGG | - | chr7_2:62991730-62991749 | None:intergenic | 25.0% |
| ! | ATAATATAGTAAGACACACA+TGG | - | chr7_2:62991731-62991750 | None:intergenic | 25.0% |
| ! | TGAATTTAGTCATTCGATAA+AGG | + | chr7_2:62992202-62992221 | Msa1068000:intron | 25.0% |
| ! | ATACAATAAATTTGACCATC+GGG | - | chr7_2:62992442-62992461 | None:intergenic | 25.0% |
| ! | CATACAATAAATTTGACCAT+CGG | - | chr7_2:62992443-62992462 | None:intergenic | 25.0% |
| ! | TGTTTAATAGAGAATGGAAA+AGG | - | chr7_2:62992479-62992498 | None:intergenic | 25.0% |
| ! | GTATAAAAAAAAATGTCGTG+GGG | + | chr7_2:62992541-62992560 | Msa1068000:intron | 25.0% |
| ! | GATGATATGATAAGATTAGA+AGG | + | chr7_2:62992710-62992729 | Msa1068000:intron | 25.0% |
| ! | ATAAGATTAGAAGGATCTAA+AGG | + | chr7_2:62992719-62992738 | Msa1068000:CDS | 25.0% |
| ! | AAAGTATGAAGAATTCTTTG+AGG | + | chr7_2:62992771-62992790 | Msa1068000:CDS | 25.0% |
| !! | AAGAACTTTTCTCAATTGTT+TGG | + | chr7_2:62992851-62992870 | Msa1068000:CDS | 25.0% |
| !! | GTTTTCTCATACTAATTTTG+TGG | + | chr7_2:62992892-62992911 | Msa1068000:intron | 25.0% |
| ! | GAACGAAATAAAAACAAACA+AGG | - | chr7_2:62992981-62993000 | None:intergenic | 25.0% |
| !! | TTTAAGATAAGGAAAGTTAG+AGG | - | chr7_2:62993179-62993198 | None:intergenic | 25.0% |
| !! | TAAACCCAATTTTATAGAGT+CGG | + | chr7_2:62993195-62993214 | Msa1068000:intron | 25.0% |
| !! | ATGGAAGTCTTAATTTTTCA+TGG | + | chr7_2:62993389-62993408 | Msa1068000:intron | 25.0% |
| ! | TCAATTAATCAAGCAATAGA+AGG | - | chr7_2:62993669-62993688 | None:intergenic | 25.0% |
| ! | AATTAGTTTGGTGAGTGAAA+GGG | - | chr7_2:62991625-62991644 | None:intergenic | 30.0% |
| AATATAGTAAGACACACATG+GGG | - | chr7_2:62991729-62991748 | None:intergenic | 30.0% | |
| AGTTGTTATATCTCCATTCA+AGG | + | chr7_2:62991796-62991815 | Msa1068000:five_prime_UTR | 30.0% | |
| GTTGTTATATCTCCATTCAA+GGG | + | chr7_2:62991797-62991816 | Msa1068000:five_prime_UTR | 30.0% | |
| GTGAATATCTCAATTGGAAT+TGG | - | chr7_2:62991855-62991874 | None:intergenic | 30.0% | |
| TGATAGGTGAATATCTCAAT+TGG | - | chr7_2:62991861-62991880 | None:intergenic | 30.0% | |
| GTCTCATACTTTCTTATGAT+AGG | - | chr7_2:62991877-62991896 | None:intergenic | 30.0% | |
| GATATCGTAGTAAAAGAGAT+AGG | - | chr7_2:62992036-62992055 | None:intergenic | 30.0% | |
| TATCAATCAACTTCATCCAA+CGG | - | chr7_2:62992360-62992379 | None:intergenic | 30.0% | |
| TCTCATACCTATACTTGTTT+GGG | - | chr7_2:62992517-62992536 | None:intergenic | 30.0% | |
| TTCTCATACCTATACTTGTT+TGG | - | chr7_2:62992518-62992537 | None:intergenic | 30.0% | |
| CTCGATCATCTCAATATATA+AGG | + | chr7_2:62993079-62993098 | Msa1068000:intron | 30.0% | |
| TCATCTCAATATATAAGGTG+TGG | + | chr7_2:62993084-62993103 | Msa1068000:intron | 30.0% | |
| GAAGAAATACGTGTCAATAA+TGG | + | chr7_2:62993119-62993138 | Msa1068000:intron | 30.0% | |
| ATGAAATGGACATGGAAATA+GGG | + | chr7_2:62993472-62993491 | Msa1068000:CDS | 30.0% | |
| ! | AATTAGTTTGGTGAGTGAAA+GGG | - | chr7_2:62991625-62991644 | None:intergenic | 30.0% |
| AATATAGTAAGACACACATG+GGG | - | chr7_2:62991729-62991748 | None:intergenic | 30.0% | |
| AGTTGTTATATCTCCATTCA+AGG | + | chr7_2:62991796-62991815 | Msa1068000:five_prime_UTR | 30.0% | |
| GTTGTTATATCTCCATTCAA+GGG | + | chr7_2:62991797-62991816 | Msa1068000:five_prime_UTR | 30.0% | |
| GTGAATATCTCAATTGGAAT+TGG | - | chr7_2:62991855-62991874 | None:intergenic | 30.0% | |
| TGATAGGTGAATATCTCAAT+TGG | - | chr7_2:62991861-62991880 | None:intergenic | 30.0% | |
| GTCTCATACTTTCTTATGAT+AGG | - | chr7_2:62991877-62991896 | None:intergenic | 30.0% | |
| GATATCGTAGTAAAAGAGAT+AGG | - | chr7_2:62992036-62992055 | None:intergenic | 30.0% | |
| TATCAATCAACTTCATCCAA+CGG | - | chr7_2:62992360-62992379 | None:intergenic | 30.0% | |
| TCTCATACCTATACTTGTTT+GGG | - | chr7_2:62992517-62992536 | None:intergenic | 30.0% | |
| TTCTCATACCTATACTTGTT+TGG | - | chr7_2:62992518-62992537 | None:intergenic | 30.0% | |
| CTCGATCATCTCAATATATA+AGG | + | chr7_2:62993079-62993098 | Msa1068000:intron | 30.0% | |
| TCATCTCAATATATAAGGTG+TGG | + | chr7_2:62993084-62993103 | Msa1068000:intron | 30.0% | |
| GAAGAAATACGTGTCAATAA+TGG | + | chr7_2:62993119-62993138 | Msa1068000:intron | 30.0% | |
| ATGAAATGGACATGGAAATA+GGG | + | chr7_2:62993472-62993491 | Msa1068000:CDS | 30.0% | |
| ! | GAATTAGTTTGGTGAGTGAA+AGG | - | chr7_2:62991626-62991645 | None:intergenic | 35.0% |
| CAAAAAATGCAACCCTTGAA+TGG | - | chr7_2:62991812-62991831 | None:intergenic | 35.0% | |
| !!! | CATTCAAGGGTTGCATTTTT+TGG | + | chr7_2:62991810-62991829 | Msa1068000:five_prime_UTR | 35.0% |
| ! | AGAAAGTATGAGACAGAGAA+TGG | + | chr7_2:62991883-62991902 | Msa1068000:exon | 35.0% |
| AAGAGACTTATTGCATCATG+TGG | - | chr7_2:62992013-62992032 | None:intergenic | 35.0% | |
| TAGTCATTCGATAAAGGACT+TGG | + | chr7_2:62992208-62992227 | Msa1068000:intron | 35.0% | |
| TATGACAACATACCACCATA+TGG | - | chr7_2:62992289-62992308 | None:intergenic | 35.0% | |
| TCATACCTATACTTGTTTGG+GGG | - | chr7_2:62992515-62992534 | None:intergenic | 35.0% | |
| CTCATACCTATACTTGTTTG+GGG | - | chr7_2:62992516-62992535 | None:intergenic | 35.0% | |
| !! | AACTTGTTGAAGGATAGGTT+AGG | - | chr7_2:62992818-62992837 | None:intergenic | 35.0% |
| !! | TGAACAACTTGTTGAAGGAT+AGG | - | chr7_2:62992823-62992842 | None:intergenic | 35.0% |
| TCCTTCAACAAGTTGTTCAA+AGG | + | chr7_2:62992824-62992843 | Msa1068000:CDS | 35.0% | |
| TTGAGATGATCGAGACTAAA+AGG | - | chr7_2:62993073-62993092 | None:intergenic | 35.0% | |
| ATAAGGAAAGTTAGAGGTAG+GGG | - | chr7_2:62993173-62993192 | None:intergenic | 35.0% | |
| GATAAGGAAAGTTAGAGGTA+GGG | - | chr7_2:62993174-62993193 | None:intergenic | 35.0% | |
| AGATAAGGAAAGTTAGAGGT+AGG | - | chr7_2:62993175-62993194 | None:intergenic | 35.0% | |
| CACTCCGACTCTATAAAATT+GGG | - | chr7_2:62993202-62993221 | None:intergenic | 35.0% | |
| GGACTTAGAAGAAGATGAAA+TGG | + | chr7_2:62993458-62993477 | Msa1068000:CDS | 35.0% | |
| AGAAGAAGATGAAATGGACA+TGG | + | chr7_2:62993464-62993483 | Msa1068000:CDS | 35.0% | |
| GATGAAATGGACATGGAAAT+AGG | + | chr7_2:62993471-62993490 | Msa1068000:CDS | 35.0% | |
| TCACATGTTGTACATCTGTT+GGG | - | chr7_2:62993500-62993519 | None:intergenic | 35.0% | |
| !! | TTTTGGCTGTAAAGATTGAG+AGG | - | chr7_2:62993619-62993638 | None:intergenic | 35.0% |
| ! | ATGGGAGATGTTTCATGTTT+TGG | - | chr7_2:62993636-62993655 | None:intergenic | 35.0% |
| ! | ATAGAAGGCATGATGTTGAT+GGG | - | chr7_2:62993654-62993673 | None:intergenic | 35.0% |
| ! | AATAGAAGGCATGATGTTGA+TGG | - | chr7_2:62993655-62993674 | None:intergenic | 35.0% |
| ! | GAAAGTGTGATTCATTGTTG+TGG | + | chr7_2:62993737-62993756 | Msa1068000:three_prime_UTR | 35.0% |
| ! | GAATTAGTTTGGTGAGTGAA+AGG | - | chr7_2:62991626-62991645 | None:intergenic | 35.0% |
| CAAAAAATGCAACCCTTGAA+TGG | - | chr7_2:62991812-62991831 | None:intergenic | 35.0% | |
| !!! | CATTCAAGGGTTGCATTTTT+TGG | + | chr7_2:62991810-62991829 | Msa1068000:five_prime_UTR | 35.0% |
| ! | AGAAAGTATGAGACAGAGAA+TGG | + | chr7_2:62991883-62991902 | Msa1068000:exon | 35.0% |
| AAGAGACTTATTGCATCATG+TGG | - | chr7_2:62992013-62992032 | None:intergenic | 35.0% | |
| TAGTCATTCGATAAAGGACT+TGG | + | chr7_2:62992208-62992227 | Msa1068000:intron | 35.0% | |
| TATGACAACATACCACCATA+TGG | - | chr7_2:62992289-62992308 | None:intergenic | 35.0% | |
| TCATACCTATACTTGTTTGG+GGG | - | chr7_2:62992515-62992534 | None:intergenic | 35.0% | |
| CTCATACCTATACTTGTTTG+GGG | - | chr7_2:62992516-62992535 | None:intergenic | 35.0% | |
| !! | AACTTGTTGAAGGATAGGTT+AGG | - | chr7_2:62992818-62992837 | None:intergenic | 35.0% |
| !! | TGAACAACTTGTTGAAGGAT+AGG | - | chr7_2:62992823-62992842 | None:intergenic | 35.0% |
| TCCTTCAACAAGTTGTTCAA+AGG | + | chr7_2:62992824-62992843 | Msa1068000:CDS | 35.0% | |
| TTGAGATGATCGAGACTAAA+AGG | - | chr7_2:62993073-62993092 | None:intergenic | 35.0% | |
| ATAAGGAAAGTTAGAGGTAG+GGG | - | chr7_2:62993173-62993192 | None:intergenic | 35.0% | |
| GATAAGGAAAGTTAGAGGTA+GGG | - | chr7_2:62993174-62993193 | None:intergenic | 35.0% | |
| AGATAAGGAAAGTTAGAGGT+AGG | - | chr7_2:62993175-62993194 | None:intergenic | 35.0% | |
| CACTCCGACTCTATAAAATT+GGG | - | chr7_2:62993202-62993221 | None:intergenic | 35.0% | |
| GGACTTAGAAGAAGATGAAA+TGG | + | chr7_2:62993458-62993477 | Msa1068000:CDS | 35.0% | |
| AGAAGAAGATGAAATGGACA+TGG | + | chr7_2:62993464-62993483 | Msa1068000:CDS | 35.0% | |
| GATGAAATGGACATGGAAAT+AGG | + | chr7_2:62993471-62993490 | Msa1068000:CDS | 35.0% | |
| TCACATGTTGTACATCTGTT+GGG | - | chr7_2:62993500-62993519 | None:intergenic | 35.0% | |
| !! | TTTTGGCTGTAAAGATTGAG+AGG | - | chr7_2:62993619-62993638 | None:intergenic | 35.0% |
| ! | ATGGGAGATGTTTCATGTTT+TGG | - | chr7_2:62993636-62993655 | None:intergenic | 35.0% |
| ! | ATAGAAGGCATGATGTTGAT+GGG | - | chr7_2:62993654-62993673 | None:intergenic | 35.0% |
| ! | AATAGAAGGCATGATGTTGA+TGG | - | chr7_2:62993655-62993674 | None:intergenic | 35.0% |
| ! | GAAAGTGTGATTCATTGTTG+TGG | + | chr7_2:62993737-62993756 | Msa1068000:three_prime_UTR | 35.0% |
| !!! | TCAAGGGTTGCATTTTTTGG+TGG | + | chr7_2:62991813-62991832 | Msa1068000:five_prime_UTR | 40.0% |
| GTATGAGACAGAGAATGGAA+AGG | + | chr7_2:62991888-62991907 | Msa1068000:exon | 40.0% | |
| !! | CTGCAGGTTTTGATCTTCTT+GGG | - | chr7_2:62991979-62991998 | None:intergenic | 40.0% |
| !! | TCTGCAGGTTTTGATCTTCT+TGG | - | chr7_2:62991980-62991999 | None:intergenic | 40.0% |
| !! | TGCAAGAAAGTGTTGCCATA+TGG | + | chr7_2:62992271-62992290 | Msa1068000:intron | 40.0% |
| !! | AAGAAAGTGTTGCCATATGG+TGG | + | chr7_2:62992274-62992293 | Msa1068000:intron | 40.0% |
| !!! | AACGATGTATTTTGACCCGA+TGG | + | chr7_2:62992424-62992443 | Msa1068000:intron | 40.0% |
| TTCTTCCCCCAAACAAGTAT+AGG | + | chr7_2:62992507-62992526 | Msa1068000:intron | 40.0% | |
| TTGAAGGATAGGTTAGGCTT+TGG | - | chr7_2:62992812-62992831 | None:intergenic | 40.0% | |
| !! | GCCTTTGAACAACTTGTTGA+AGG | - | chr7_2:62992828-62992847 | None:intergenic | 40.0% |
| AAAGTTAGAGGTAGGGGAAA+TGG | - | chr7_2:62993167-62993186 | None:intergenic | 40.0% | |
| CCACTCCGACTCTATAAAAT+TGG | - | chr7_2:62993203-62993222 | None:intergenic | 40.0% | |
| ! | CCAATTTTATAGAGTCGGAG+TGG | + | chr7_2:62993200-62993219 | Msa1068000:intron | 40.0% |
| AATTGCAGTGGAGAAAGAAG+AGG | + | chr7_2:62993437-62993456 | Msa1068000:intron | 40.0% | |
| GTCACATGTTGTACATCTGT+TGG | - | chr7_2:62993501-62993520 | None:intergenic | 40.0% | |
| GTACAACATGTGACACACAT+TGG | + | chr7_2:62993507-62993526 | Msa1068000:CDS | 40.0% | |
| AACATGTGACACACATTGGT+TGG | + | chr7_2:62993511-62993530 | Msa1068000:CDS | 40.0% | |
| ! | ACATGTGACACACATTGGTT+GGG | + | chr7_2:62993512-62993531 | Msa1068000:CDS | 40.0% |
| !!! | TCAAGGGTTGCATTTTTTGG+TGG | + | chr7_2:62991813-62991832 | Msa1068000:five_prime_UTR | 40.0% |
| GTATGAGACAGAGAATGGAA+AGG | + | chr7_2:62991888-62991907 | Msa1068000:exon | 40.0% | |
| !! | CTGCAGGTTTTGATCTTCTT+GGG | - | chr7_2:62991979-62991998 | None:intergenic | 40.0% |
| !! | TCTGCAGGTTTTGATCTTCT+TGG | - | chr7_2:62991980-62991999 | None:intergenic | 40.0% |
| !! | TGCAAGAAAGTGTTGCCATA+TGG | + | chr7_2:62992271-62992290 | Msa1068000:intron | 40.0% |
| !! | AAGAAAGTGTTGCCATATGG+TGG | + | chr7_2:62992274-62992293 | Msa1068000:intron | 40.0% |
| !!! | AACGATGTATTTTGACCCGA+TGG | + | chr7_2:62992424-62992443 | Msa1068000:intron | 40.0% |
| TTCTTCCCCCAAACAAGTAT+AGG | + | chr7_2:62992507-62992526 | Msa1068000:intron | 40.0% | |
| TTGAAGGATAGGTTAGGCTT+TGG | - | chr7_2:62992812-62992831 | None:intergenic | 40.0% | |
| !! | GCCTTTGAACAACTTGTTGA+AGG | - | chr7_2:62992828-62992847 | None:intergenic | 40.0% |
| AAAGTTAGAGGTAGGGGAAA+TGG | - | chr7_2:62993167-62993186 | None:intergenic | 40.0% | |
| CCACTCCGACTCTATAAAAT+TGG | - | chr7_2:62993203-62993222 | None:intergenic | 40.0% | |
| ! | CCAATTTTATAGAGTCGGAG+TGG | + | chr7_2:62993200-62993219 | Msa1068000:intron | 40.0% |
| AATTGCAGTGGAGAAAGAAG+AGG | + | chr7_2:62993437-62993456 | Msa1068000:intron | 40.0% | |
| GTCACATGTTGTACATCTGT+TGG | - | chr7_2:62993501-62993520 | None:intergenic | 40.0% | |
| GTACAACATGTGACACACAT+TGG | + | chr7_2:62993507-62993526 | Msa1068000:CDS | 40.0% | |
| AACATGTGACACACATTGGT+TGG | + | chr7_2:62993511-62993530 | Msa1068000:CDS | 40.0% | |
| ! | ACATGTGACACACATTGGTT+GGG | + | chr7_2:62993512-62993531 | Msa1068000:CDS | 40.0% |
| GTAAGACACACATGGGGATA+GGG | - | chr7_2:62991723-62991742 | None:intergenic | 45.0% | |
| AGTAAGACACACATGGGGAT+AGG | - | chr7_2:62991724-62991743 | None:intergenic | 45.0% | |
| GTCATTCTTCCTTTCTCAGC+TGG | + | chr7_2:62991914-62991933 | Msa1068000:CDS | 45.0% | |
| GAGATACAACCAGCTGAGAA+AGG | - | chr7_2:62991926-62991945 | None:intergenic | 45.0% | |
| !! | GGTTTTGATCTTCTTGGGTG+TGG | - | chr7_2:62991974-62991993 | None:intergenic | 45.0% |
| ! | TGTGGTGAATTAGTCTCTGC+AGG | - | chr7_2:62991995-62992014 | None:intergenic | 45.0% |
| ! | TCAACTTCATCCAACGGACT+CGG | - | chr7_2:62992354-62992373 | None:intergenic | 45.0% |
| AGAAGGATCTAAAGGAGTCG+AGG | + | chr7_2:62992727-62992746 | Msa1068000:CDS | 45.0% | |
| GAGGATTCAGAGACTTTGTC+TGG | + | chr7_2:62992746-62992765 | Msa1068000:CDS | 45.0% | |
| GTAAGACACACATGGGGATA+GGG | - | chr7_2:62991723-62991742 | None:intergenic | 45.0% | |
| AGTAAGACACACATGGGGAT+AGG | - | chr7_2:62991724-62991743 | None:intergenic | 45.0% | |
| GTCATTCTTCCTTTCTCAGC+TGG | + | chr7_2:62991914-62991933 | Msa1068000:CDS | 45.0% | |
| GAGATACAACCAGCTGAGAA+AGG | - | chr7_2:62991926-62991945 | None:intergenic | 45.0% | |
| !! | GGTTTTGATCTTCTTGGGTG+TGG | - | chr7_2:62991974-62991993 | None:intergenic | 45.0% |
| ! | TGTGGTGAATTAGTCTCTGC+AGG | - | chr7_2:62991995-62992014 | None:intergenic | 45.0% |
| ! | TCAACTTCATCCAACGGACT+CGG | - | chr7_2:62992354-62992373 | None:intergenic | 45.0% |
| AGAAGGATCTAAAGGAGTCG+AGG | + | chr7_2:62992727-62992746 | Msa1068000:CDS | 45.0% | |
| GAGGATTCAGAGACTTTGTC+TGG | + | chr7_2:62992746-62992765 | Msa1068000:CDS | 45.0% | |
| !! | AAAAGATATAAATTAATATA+TGG | - | chr7_2:62992919-62992938 | None:intergenic | 5.0% |
| !! | AAAAGATATAAATTAATATA+TGG | - | chr7_2:62992919-62992938 | None:intergenic | 5.0% |
| ! | TGGGGATAGGGTACTCTCTT+AGG | - | chr7_2:62991711-62991730 | None:intergenic | 50.0% |
| CTCAGCTGGTTGTATCTCTG+AGG | + | chr7_2:62991928-62991947 | Msa1068000:CDS | 50.0% | |
| ! | TCTGAGGCTAGTGTTGCTGT+TGG | + | chr7_2:62991944-62991963 | Msa1068000:CDS | 50.0% |
| AGGACTTGGATTCTCTCCCA+CGG | + | chr7_2:62992222-62992241 | Msa1068000:intron | 50.0% | |
| GATTCTCTCCCACGGTACAT+CGG | + | chr7_2:62992230-62992249 | Msa1068000:intron | 50.0% | |
| ! | TTGTTGCACCGATGTACCGT+GGG | - | chr7_2:62992241-62992260 | None:intergenic | 50.0% |
| ! | TTTGTTGCACCGATGTACCG+TGG | - | chr7_2:62992242-62992261 | None:intergenic | 50.0% |
| TTGGTGAGTATGCAAGCGTG+TGG | + | chr7_2:62992870-62992889 | Msa1068000:intron | 50.0% | |
| AGTCGGAGTGGTGAGAAGAT+GGG | + | chr7_2:62993212-62993231 | Msa1068000:intron | 50.0% | |
| ! | GTGACACACATTGGTTGGGA+TGG | + | chr7_2:62993516-62993535 | Msa1068000:CDS | 50.0% |
| TGCTGCTCATGACCCAATGA+GGG | + | chr7_2:62993554-62993573 | Msa1068000:CDS | 50.0% | |
| TCATGACCCAATGAGGGGAT+GGG | + | chr7_2:62993560-62993579 | Msa1068000:CDS | 50.0% | |
| GAGAATCCCATCCCCTCATT+GGG | - | chr7_2:62993569-62993588 | None:intergenic | 50.0% | |
| AGAGAATCCCATCCCCTCAT+TGG | - | chr7_2:62993570-62993589 | None:intergenic | 50.0% | |
| ! | TGGGGATAGGGTACTCTCTT+AGG | - | chr7_2:62991711-62991730 | None:intergenic | 50.0% |
| CTCAGCTGGTTGTATCTCTG+AGG | + | chr7_2:62991928-62991947 | Msa1068000:CDS | 50.0% | |
| ! | TCTGAGGCTAGTGTTGCTGT+TGG | + | chr7_2:62991944-62991963 | Msa1068000:CDS | 50.0% |
| AGGACTTGGATTCTCTCCCA+CGG | + | chr7_2:62992222-62992241 | Msa1068000:intron | 50.0% | |
| GATTCTCTCCCACGGTACAT+CGG | + | chr7_2:62992230-62992249 | Msa1068000:intron | 50.0% | |
| ! | TTGTTGCACCGATGTACCGT+GGG | - | chr7_2:62992241-62992260 | None:intergenic | 50.0% |
| ! | TTTGTTGCACCGATGTACCG+TGG | - | chr7_2:62992242-62992261 | None:intergenic | 50.0% |
| TTGGTGAGTATGCAAGCGTG+TGG | + | chr7_2:62992870-62992889 | Msa1068000:intron | 50.0% | |
| AGTCGGAGTGGTGAGAAGAT+GGG | + | chr7_2:62993212-62993231 | Msa1068000:intron | 50.0% | |
| ! | GTGACACACATTGGTTGGGA+TGG | + | chr7_2:62993516-62993535 | Msa1068000:CDS | 50.0% |
| TGCTGCTCATGACCCAATGA+GGG | + | chr7_2:62993554-62993573 | Msa1068000:CDS | 50.0% | |
| TCATGACCCAATGAGGGGAT+GGG | + | chr7_2:62993560-62993579 | Msa1068000:CDS | 50.0% | |
| GAGAATCCCATCCCCTCATT+GGG | - | chr7_2:62993569-62993588 | None:intergenic | 50.0% | |
| AGAGAATCCCATCCCCTCAT+TGG | - | chr7_2:62993570-62993589 | None:intergenic | 50.0% | |
| GAGAGAAGATCCGAGTCCGT+TGG | + | chr7_2:62992341-62992360 | Msa1068000:intron | 55.0% | |
| GAGTCGGAGTGGTGAGAAGA+TGG | + | chr7_2:62993211-62993230 | Msa1068000:intron | 55.0% | |
| TGGGTCATGAGCAGCACATG+AGG | - | chr7_2:62993550-62993569 | None:intergenic | 55.0% | |
| ! | GTGCTGCTCATGACCCAATG+AGG | + | chr7_2:62993553-62993572 | Msa1068000:CDS | 55.0% |
| GCTGCTCATGACCCAATGAG+GGG | + | chr7_2:62993555-62993574 | Msa1068000:CDS | 55.0% | |
| CTCATGACCCAATGAGGGGA+TGG | + | chr7_2:62993559-62993578 | Msa1068000:CDS | 55.0% | |
| GCTACAGAGAGAAGCTCAGG+AGG | - | chr7_2:62993597-62993616 | None:intergenic | 55.0% | |
| GAGGCTACAGAGAGAAGCTC+AGG | - | chr7_2:62993600-62993619 | None:intergenic | 55.0% | |
| GAGAGAAGATCCGAGTCCGT+TGG | + | chr7_2:62992341-62992360 | Msa1068000:intron | 55.0% | |
| GAGTCGGAGTGGTGAGAAGA+TGG | + | chr7_2:62993211-62993230 | Msa1068000:intron | 55.0% | |
| TGGGTCATGAGCAGCACATG+AGG | - | chr7_2:62993550-62993569 | None:intergenic | 55.0% | |
| ! | GTGCTGCTCATGACCCAATG+AGG | + | chr7_2:62993553-62993572 | Msa1068000:CDS | 55.0% |
| GCTGCTCATGACCCAATGAG+GGG | + | chr7_2:62993555-62993574 | Msa1068000:CDS | 55.0% | |
| CTCATGACCCAATGAGGGGA+TGG | + | chr7_2:62993559-62993578 | Msa1068000:CDS | 55.0% | |
| GCTACAGAGAGAAGCTCAGG+AGG | - | chr7_2:62993597-62993616 | None:intergenic | 55.0% | |
| GAGGCTACAGAGAGAAGCTC+AGG | - | chr7_2:62993600-62993619 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 62991615 | 62993768 | 62991615 | ID=Msa1068000;Name=Msa1068000 |
| chr7_2 | mRNA | 62991615 | 62993768 | 62991615 | ID=Msa1068000-mRNA-1;Parent=Msa1068000;Name=Msa1068000-mRNA-1;_AED=0.22;_eAED=0.22;_QI=275|0.5|0.66|1|1|1|3|88|177 |
| chr7_2 | exon | 62991615 | 62992025 | 62991615 | ID=Msa1068000-mRNA-1:exon:12899;Parent=Msa1068000-mRNA-1 |
| chr7_2 | exon | 62992711 | 62992872 | 62992711 | ID=Msa1068000-mRNA-1:exon:12900;Parent=Msa1068000-mRNA-1 |
| chr7_2 | exon | 62993445 | 62993768 | 62993445 | ID=Msa1068000-mRNA-1:exon:12901;Parent=Msa1068000-mRNA-1 |
| chr7_2 | five_prime_UTR | 62991615 | 62991889 | 62991615 | ID=Msa1068000-mRNA-1:five_prime_utr;Parent=Msa1068000-mRNA-1 |
| chr7_2 | CDS | 62991890 | 62992025 | 62991890 | ID=Msa1068000-mRNA-1:cds;Parent=Msa1068000-mRNA-1 |
| chr7_2 | CDS | 62992711 | 62992872 | 62992711 | ID=Msa1068000-mRNA-1:cds;Parent=Msa1068000-mRNA-1 |
| chr7_2 | CDS | 62993445 | 62993680 | 62993445 | ID=Msa1068000-mRNA-1:cds;Parent=Msa1068000-mRNA-1 |
| chr7_2 | three_prime_UTR | 62993681 | 62993768 | 62993681 | ID=Msa1068000-mRNA-1:three_prime_utr;Parent=Msa1068000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
