Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1029450 | MCH81103.1 | 65.789 | 190 | 65 | 0 | 63 | 252 | 84 | 273 | 1.14e-86 | 276 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1029450 | A0A392M264 | 65.789 | 190 | 65 | 0 | 63 | 252 | 84 | 273 | 5.45e-87 | 276 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0980090 | Msa1029450 | 0.803420 | 3.516718e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1029450 | MtrunA17_Chr7g0269651 | 44.382 | 178 | 99 | 0 | 75 | 252 | 234 | 411 | 2.04e-53 | 185 |
| Msa1029450 | MtrunA17_Chr1g0206491 | 43.820 | 178 | 100 | 0 | 75 | 252 | 150 | 327 | 5.60e-50 | 172 |
| Msa1029450 | MtrunA17_Chr1g0173671 | 42.857 | 182 | 103 | 1 | 70 | 251 | 220 | 400 | 9.70e-48 | 168 |
| Msa1029450 | MtrunA17_Chr3g0101871 | 46.927 | 179 | 91 | 2 | 75 | 252 | 186 | 361 | 1.30e-39 | 145 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 52 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATATAGAGCTGACAAAATT+TGG | 0.137033 | 7_1:+62882105 | None:intergenic |
| CCAATCGTCTATCTCATTTC+AGG | 0.235738 | 7_1:-62882060 | Msa1029450:intron |
| TCAAGAATTGTTGGCTATAA+TGG | 0.241246 | 7_1:-62881830 | Msa1029450:CDS |
| TCCATTGAAAGCAGAGGAAT+TGG | 0.315989 | 7_1:+62882659 | None:intergenic |
| CAATGCAAGGTCAAATTTCC+AGG | 0.360698 | 7_1:-62883244 | Msa1029450:intron |
| TTTGTTGATTCAAGAATTGT+TGG | 0.371839 | 7_1:-62881839 | Msa1029450:CDS |
| TCCAATTCCTCTGCTTTCAA+TGG | 0.388478 | 7_1:-62882660 | Msa1029450:CDS |
| CTTCCCCTTCATACAACATA+TGG | 0.397034 | 7_1:+62882369 | None:intergenic |
| TTACATAGATGTTGGAGATA+TGG | 0.412935 | 7_1:-62882476 | Msa1029450:CDS |
| CAATGCAAGATCAAATTTCC+AGG | 0.427433 | 7_1:-62883374 | Msa1029450:intron |
| ATTGAGTCCGGTTTGAATCA+AGG | 0.427545 | 7_1:-62882208 | Msa1029450:CDS |
| TTGATGCAGTGGTCGTTCTC+AGG | 0.436402 | 7_1:-62881878 | Msa1029450:intron |
| ATATAGAGCTGACAAAATTT+GGG | 0.442136 | 7_1:+62882106 | None:intergenic |
| TTTGCAGATTACATAGATGT+TGG | 0.461756 | 7_1:-62882484 | Msa1029450:intron |
| TTGGGCCGCTGTCCTTCAGC+TGG | 0.463777 | 7_1:+62882124 | None:intergenic |
| GGAGGAGGTTCAATCATAGA+TGG | 0.482856 | 7_1:+62882337 | None:intergenic |
| CAAGGTTTCACTGTTGGCAG+TGG | 0.484452 | 7_1:-62882704 | Msa1029450:CDS |
| ATACAACATATGGAAGCATC+AGG | 0.486795 | 7_1:+62882379 | None:intergenic |
| ACCAGGGCCTTGATTCAAAC+CGG | 0.491529 | 7_1:+62882201 | None:intergenic |
| AGCGATGTAATGCTATGTTT+TGG | 0.502896 | 7_1:-62882441 | Msa1029450:CDS |
| CACTGCCAACAGTGAAACCT+TGG | 0.507693 | 7_1:+62882705 | None:intergenic |
| ATATGATACAGAGAACGAAT+TGG | 0.510729 | 7_1:-62882083 | Msa1029450:CDS |
| GCAATAAAATGAGAGCTCTT+CGG | 0.511619 | 7_1:+62882283 | None:intergenic |
| TCCGGTTTGAATCAAGGCCC+TGG | 0.530026 | 7_1:-62882202 | Msa1029450:CDS |
| GGTAGCCTTCTTCCAGCTGA+AGG | 0.539761 | 7_1:-62882136 | Msa1029450:CDS |
| ATAACAAAATGAGGAGGACC+AGG | 0.541939 | 7_1:+62882184 | None:intergenic |
| GCTGTCCTTCAGCTGGAAGA+AGG | 0.556714 | 7_1:+62882131 | None:intergenic |
| TTTGATAGGGGTGAATTGCA+AGG | 0.557575 | 7_1:-62882632 | Msa1029450:intron |
| TGCTTCCATATGTTGTATGA+AGG | 0.561115 | 7_1:-62882374 | Msa1029450:CDS |
| GCAGACCAAGGTTTCACTGT+TGG | 0.564900 | 7_1:-62882710 | Msa1029450:CDS |
| AGCAGAGGAATTGGATCACG+AGG | 0.565908 | 7_1:+62882668 | None:intergenic |
| ATTATTGTACGATCGAACAT+TGG | 0.568242 | 7_1:+62882261 | None:intergenic |
| GGAGAACGTGCGCAGAGGCG+TGG | 0.582644 | 7_1:-62882415 | Msa1029450:CDS |
| AAAAGACTGCGAAGCAAAGG+AGG | 0.583856 | 7_1:+62882319 | None:intergenic |
| CTTCCATATGTTGTATGAAG+GGG | 0.585044 | 7_1:-62882372 | Msa1029450:CDS |
| TGGATTGTGTTTGCAGACCA+AGG | 0.591007 | 7_1:-62882722 | Msa1029450:CDS |
| AATGCGATGGTAATTCTGAC+CGG | 0.599964 | 7_1:+62882159 | None:intergenic |
| TGACCGGAGATAACAAAATG+AGG | 0.603304 | 7_1:+62882175 | None:intergenic |
| AGAGTGCTAATTACAATGCA+AGG | 0.603574 | 7_1:-62883257 | Msa1029450:CDS |
| GGTCAGAATTACCATCGCAT+TGG | 0.608029 | 7_1:-62882157 | Msa1029450:CDS |
| AACAATTCTTGAATCAACAA+AGG | 0.609706 | 7_1:+62881841 | None:intergenic |
| GGAAGCATCAGGAGTAGCAG+TGG | 0.618462 | 7_1:+62882390 | None:intergenic |
| CCTGAAATGAGATAGACGAT+TGG | 0.622167 | 7_1:+62882060 | None:intergenic |
| AGCATTACATCGCTGACACA+CGG | 0.625663 | 7_1:+62882450 | None:intergenic |
| GAAGAAGGCTACCAATGCGA+TGG | 0.625681 | 7_1:+62882146 | None:intergenic |
| AGACTGCGAAGCAAAGGAGG+AGG | 0.637807 | 7_1:+62882322 | None:intergenic |
| GCTTCCATATGTTGTATGAA+GGG | 0.642856 | 7_1:-62882373 | Msa1029450:CDS |
| TTCTTCCAGCTGAAGGACAG+CGG | 0.660000 | 7_1:-62882129 | Msa1029450:CDS |
| GGTATGGAGAACGTGCGCAG+AGG | 0.703088 | 7_1:-62882420 | Msa1029450:CDS |
| CCGGAGATAACAAAATGAGG+AGG | 0.704211 | 7_1:+62882178 | None:intergenic |
| GCAGAGGAATTGGATCACGA+GGG | 0.710385 | 7_1:+62882669 | None:intergenic |
| TAACAAAATGAGGAGGACCA+GGG | 0.713176 | 7_1:+62882185 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAGAATATTTATATCAAA+TGG | + | chr7_1:62882407-62882426 | None:intergenic | 10.0% |
| !!! | ATTAAAAACTTTAAGAATAA+TGG | + | chr7_1:62882700-62882719 | None:intergenic | 10.0% |
| !! | TGTAATTTATAATATTATGT+TGG | - | chr7_1:62882767-62882786 | Msa1029450:intron | 10.0% |
| !! | TAAAGAATATTTATATCAAA+TGG | + | chr7_1:62882407-62882426 | None:intergenic | 10.0% |
| !!! | ATTAAAAACTTTAAGAATAA+TGG | + | chr7_1:62882700-62882719 | None:intergenic | 10.0% |
| !! | TGTAATTTATAATATTATGT+TGG | - | chr7_1:62882767-62882786 | Msa1029450:intron | 10.0% |
| !! | AAAAAAATTATGCAAAACAA+CGG | + | chr7_1:62882742-62882761 | None:intergenic | 15.0% |
| !! | AAAAAAATTATGCAAAACAA+CGG | + | chr7_1:62882742-62882761 | None:intergenic | 15.0% |
| !!! | TTTAAAGGTTGTTATTATGT+AGG | + | chr7_1:62881816-62881835 | None:intergenic | 20.0% |
| !!! | AATGTTATTTTGTTCCTTTT+GGG | + | chr7_1:62881844-62881863 | None:intergenic | 20.0% |
| !! | TTCATATTAGAAAACAACAA+AGG | - | chr7_1:62882334-62882353 | Msa1029450:CDS | 20.0% |
| !!! | TGTGTTTAATTTTTACACTA+TGG | - | chr7_1:62882543-62882562 | Msa1029450:intron | 20.0% |
| !!! | TTTAAAGGTTGTTATTATGT+AGG | + | chr7_1:62881816-62881835 | None:intergenic | 20.0% |
| !!! | AATGTTATTTTGTTCCTTTT+GGG | + | chr7_1:62881844-62881863 | None:intergenic | 20.0% |
| !! | TTCATATTAGAAAACAACAA+AGG | - | chr7_1:62882334-62882353 | Msa1029450:CDS | 20.0% |
| !!! | TGTGTTTAATTTTTACACTA+TGG | - | chr7_1:62882543-62882562 | Msa1029450:intron | 20.0% |
| ! | CAAAAGGAACAAAATAACAT+TGG | - | chr7_1:62881843-62881862 | Msa1029450:CDS | 25.0% |
| ! | TTGTAATTAGCACTCTATAT+TGG | + | chr7_1:62881894-62881913 | None:intergenic | 25.0% |
| !!! | TTTTGGGATATTTAATTACC+TGG | + | chr7_1:62881932-62881951 | None:intergenic | 25.0% |
| ! | AGGTAATTAAATATCCCAAA+AGG | - | chr7_1:62881931-62881950 | Msa1029450:intron | 25.0% |
| !!! | CAATGTTATTTTGTTCCTTT+TGG | + | chr7_1:62881845-62881864 | None:intergenic | 25.0% |
| ! | CAAAAGGAACAAAATAACAT+TGG | - | chr7_1:62881843-62881862 | Msa1029450:CDS | 25.0% |
| ! | CTATCCTTCAAAAAAAACAT+TGG | - | chr7_1:62881973-62881992 | Msa1029450:intron | 25.0% |
| !!! | GTTTCCAATGTTTTTTTTGA+AGG | + | chr7_1:62881980-62881999 | None:intergenic | 25.0% |
| ! | TTGTAATTAGCACTCTATAT+TGG | + | chr7_1:62881894-62881913 | None:intergenic | 25.0% |
| !! | ACTACTATGTAGTATACTTT+TGG | + | chr7_1:62882086-62882105 | None:intergenic | 25.0% |
| !!! | TAAATTCAACCATTTTCAAG+CGG | - | chr7_1:62882109-62882128 | Msa1029450:CDS | 25.0% |
| !! | TCTTATTGCATATCTGAAAT+AGG | + | chr7_1:62882135-62882154 | None:intergenic | 25.0% |
| ! | GTGATCTATTTAATCGAAAT+AGG | - | chr7_1:62882253-62882272 | Msa1029450:CDS | 25.0% |
| ! | TATAATTCCAAACGAACAAA+TGG | + | chr7_1:62882456-62882475 | None:intergenic | 25.0% |
| ! | AACGAACAAATGGTTATTAA+TGG | + | chr7_1:62882499-62882518 | None:intergenic | 25.0% |
| ! | TTAATAACCATTTGTTCGTT+TGG | - | chr7_1:62882499-62882518 | Msa1029450:intron | 25.0% |
| ! | TATAATTCCAAACGAACAAA+TGG | + | chr7_1:62882456-62882475 | None:intergenic | 25.0% |
| !!! | TTTCAATGGAGTTTTTTGAT+AGG | - | chr7_1:62882639-62882658 | Msa1029450:CDS | 25.0% |
| !!! | TTCAATGGAGTTTTTTGATA+GGG | - | chr7_1:62882640-62882659 | Msa1029450:CDS | 25.0% |
| !! | TATGTTCTCTTTTACTTCTA+TGG | - | chr7_1:62883046-62883065 | Msa1029450:intron | 25.0% |
| !! | ATGTTCTCTTTTACTTCTAT+GGG | - | chr7_1:62883047-62883066 | Msa1029450:intron | 25.0% |
| ! | ATATAGAGCTGACAAAATTT+GGG | + | chr7_1:62883182-62883201 | None:intergenic | 25.0% |
| ! | TATATAGAGCTGACAAAATT+TGG | + | chr7_1:62883183-62883202 | None:intergenic | 25.0% |
| ! | TCAGCACAAAAAATAAACAA+AGG | + | chr7_1:62883339-62883358 | None:intergenic | 25.0% |
| ! | AAACAAGCAAACAACAAAAA+AGG | + | chr7_1:62883388-62883407 | None:intergenic | 25.0% |
| ! | AACAATTCTTGAATCAACAA+AGG | + | chr7_1:62883447-62883466 | None:intergenic | 25.0% |
| !!! | TTTGTTGATTCAAGAATTGT+TGG | - | chr7_1:62883446-62883465 | Msa1029450:intron | 25.0% |
| ! | CAAAAGGAACAAAATAACAT+TGG | - | chr7_1:62881843-62881862 | Msa1029450:CDS | 25.0% |
| ! | TTGTAATTAGCACTCTATAT+TGG | + | chr7_1:62881894-62881913 | None:intergenic | 25.0% |
| !!! | TTTTGGGATATTTAATTACC+TGG | + | chr7_1:62881932-62881951 | None:intergenic | 25.0% |
| ! | AGGTAATTAAATATCCCAAA+AGG | - | chr7_1:62881931-62881950 | Msa1029450:intron | 25.0% |
| !!! | CAATGTTATTTTGTTCCTTT+TGG | + | chr7_1:62881845-62881864 | None:intergenic | 25.0% |
| ! | CAAAAGGAACAAAATAACAT+TGG | - | chr7_1:62881843-62881862 | Msa1029450:CDS | 25.0% |
| ! | CTATCCTTCAAAAAAAACAT+TGG | - | chr7_1:62881973-62881992 | Msa1029450:intron | 25.0% |
| !!! | GTTTCCAATGTTTTTTTTGA+AGG | + | chr7_1:62881980-62881999 | None:intergenic | 25.0% |
| ! | TTGTAATTAGCACTCTATAT+TGG | + | chr7_1:62881894-62881913 | None:intergenic | 25.0% |
| !! | ACTACTATGTAGTATACTTT+TGG | + | chr7_1:62882086-62882105 | None:intergenic | 25.0% |
| !!! | TAAATTCAACCATTTTCAAG+CGG | - | chr7_1:62882109-62882128 | Msa1029450:CDS | 25.0% |
| !! | TCTTATTGCATATCTGAAAT+AGG | + | chr7_1:62882135-62882154 | None:intergenic | 25.0% |
| ! | GTGATCTATTTAATCGAAAT+AGG | - | chr7_1:62882253-62882272 | Msa1029450:CDS | 25.0% |
| ! | TATAATTCCAAACGAACAAA+TGG | + | chr7_1:62882456-62882475 | None:intergenic | 25.0% |
| ! | AACGAACAAATGGTTATTAA+TGG | + | chr7_1:62882499-62882518 | None:intergenic | 25.0% |
| ! | TTAATAACCATTTGTTCGTT+TGG | - | chr7_1:62882499-62882518 | Msa1029450:intron | 25.0% |
| ! | TATAATTCCAAACGAACAAA+TGG | + | chr7_1:62882456-62882475 | None:intergenic | 25.0% |
| !!! | TTTCAATGGAGTTTTTTGAT+AGG | - | chr7_1:62882639-62882658 | Msa1029450:CDS | 25.0% |
| !!! | TTCAATGGAGTTTTTTGATA+GGG | - | chr7_1:62882640-62882659 | Msa1029450:CDS | 25.0% |
| !! | TATGTTCTCTTTTACTTCTA+TGG | - | chr7_1:62883046-62883065 | Msa1029450:intron | 25.0% |
| !! | ATGTTCTCTTTTACTTCTAT+GGG | - | chr7_1:62883047-62883066 | Msa1029450:intron | 25.0% |
| ! | ATATAGAGCTGACAAAATTT+GGG | + | chr7_1:62883182-62883201 | None:intergenic | 25.0% |
| ! | TATATAGAGCTGACAAAATT+TGG | + | chr7_1:62883183-62883202 | None:intergenic | 25.0% |
| ! | TCAGCACAAAAAATAAACAA+AGG | + | chr7_1:62883339-62883358 | None:intergenic | 25.0% |
| ! | AAACAAGCAAACAACAAAAA+AGG | + | chr7_1:62883388-62883407 | None:intergenic | 25.0% |
| ! | AACAATTCTTGAATCAACAA+AGG | + | chr7_1:62883447-62883466 | None:intergenic | 25.0% |
| !!! | TTTGTTGATTCAAGAATTGT+TGG | - | chr7_1:62883446-62883465 | Msa1029450:intron | 25.0% |
| ! | ACCTTTAAAAGCAATGCAAA+AGG | - | chr7_1:62881827-62881846 | Msa1029450:CDS | 30.0% |
| !! | TCCTTTTGCATTGCTTTTAA+AGG | + | chr7_1:62881831-62881850 | None:intergenic | 30.0% |
| ! | GTTCTGGATATTTAATTACC+TGG | + | chr7_1:62882062-62882081 | None:intergenic | 30.0% |
| TTAATCGAAATAGGCTTTCA+AGG | - | chr7_1:62882262-62882281 | Msa1029450:CDS | 30.0% | |
| TTATGAACGATTATACTGAG+AGG | + | chr7_1:62882291-62882310 | None:intergenic | 30.0% | |
| !!! | TCAATGGAGTTTTTTGATAG+GGG | - | chr7_1:62882641-62882660 | Msa1029450:CDS | 30.0% |
| AATAATGGTACATGAGAAAC+AGG | + | chr7_1:62882685-62882704 | None:intergenic | 30.0% | |
| TTTGCAGATTACATAGATGT+TGG | - | chr7_1:62882801-62882820 | Msa1029450:intron | 30.0% | |
| TTACATAGATGTTGGAGATA+TGG | - | chr7_1:62882809-62882828 | Msa1029450:intron | 30.0% | |
| !!! | TGTAATGCTATGTTTTGGTA+TGG | - | chr7_1:62882849-62882868 | Msa1029450:intron | 30.0% |
| ATTATTGTACGATCGAACAT+TGG | + | chr7_1:62883027-62883046 | None:intergenic | 30.0% | |
| ! | TGTTCTCTTTTACTTCTATG+GGG | - | chr7_1:62883048-62883067 | Msa1029450:intron | 30.0% |
| ATATGATACAGAGAACGAAT+TGG | - | chr7_1:62883202-62883221 | Msa1029450:intron | 30.0% | |
| ! | TCAAGAATTGTTGGCTATAA+TGG | - | chr7_1:62883455-62883474 | Msa1029450:intron | 30.0% |
| ! | ACCTTTAAAAGCAATGCAAA+AGG | - | chr7_1:62881827-62881846 | Msa1029450:CDS | 30.0% |
| !! | TCCTTTTGCATTGCTTTTAA+AGG | + | chr7_1:62881831-62881850 | None:intergenic | 30.0% |
| ! | GTTCTGGATATTTAATTACC+TGG | + | chr7_1:62882062-62882081 | None:intergenic | 30.0% |
| TTAATCGAAATAGGCTTTCA+AGG | - | chr7_1:62882262-62882281 | Msa1029450:CDS | 30.0% | |
| TTATGAACGATTATACTGAG+AGG | + | chr7_1:62882291-62882310 | None:intergenic | 30.0% | |
| !!! | TCAATGGAGTTTTTTGATAG+GGG | - | chr7_1:62882641-62882660 | Msa1029450:CDS | 30.0% |
| AATAATGGTACATGAGAAAC+AGG | + | chr7_1:62882685-62882704 | None:intergenic | 30.0% | |
| TTTGCAGATTACATAGATGT+TGG | - | chr7_1:62882801-62882820 | Msa1029450:intron | 30.0% | |
| TTACATAGATGTTGGAGATA+TGG | - | chr7_1:62882809-62882828 | Msa1029450:intron | 30.0% | |
| !!! | TGTAATGCTATGTTTTGGTA+TGG | - | chr7_1:62882849-62882868 | Msa1029450:intron | 30.0% |
| ATTATTGTACGATCGAACAT+TGG | + | chr7_1:62883027-62883046 | None:intergenic | 30.0% | |
| ! | TGTTCTCTTTTACTTCTATG+GGG | - | chr7_1:62883048-62883067 | Msa1029450:intron | 30.0% |
| ATATGATACAGAGAACGAAT+TGG | - | chr7_1:62883202-62883221 | Msa1029450:intron | 30.0% | |
| ! | TCAAGAATTGTTGGCTATAA+TGG | - | chr7_1:62883455-62883474 | Msa1029450:intron | 30.0% |
| CAATGCAAGATCAAATTTCC+AGG | - | chr7_1:62881911-62881930 | Msa1029450:intron | 35.0% | |
| ! | AGAGTGCTAATTACAATGCA+AGG | - | chr7_1:62881898-62881917 | Msa1029450:intron | 35.0% |
| !!! | GTAGTATACTTTTGGAGTTC+TGG | + | chr7_1:62882078-62882097 | None:intergenic | 35.0% |
| CAATAAGATTATCACGTTCC+TGG | - | chr7_1:62882147-62882166 | Msa1029450:CDS | 35.0% | |
| ! | TGAAATGCCATTTGTTCGTT+TGG | - | chr7_1:62882446-62882465 | Msa1029450:CDS | 35.0% |
| AAAAACTCCATTGAAAGCAG+AGG | + | chr7_1:62882635-62882654 | None:intergenic | 35.0% | |
| ! | AGCGATGTAATGCTATGTTT+TGG | - | chr7_1:62882844-62882863 | Msa1029450:intron | 35.0% |
| !! | ATACAACATATGGAAGCATC+AGG | + | chr7_1:62882909-62882928 | None:intergenic | 35.0% |
| TGCTTCCATATGTTGTATGA+AGG | - | chr7_1:62882911-62882930 | Msa1029450:intron | 35.0% | |
| GCTTCCATATGTTGTATGAA+GGG | - | chr7_1:62882912-62882931 | Msa1029450:intron | 35.0% | |
| CTTCCATATGTTGTATGAAG+GGG | - | chr7_1:62882913-62882932 | Msa1029450:intron | 35.0% | |
| GCAATAAAATGAGAGCTCTT+CGG | + | chr7_1:62883005-62883024 | None:intergenic | 35.0% | |
| ! | GTTCTCTTTTACTTCTATGG+GGG | - | chr7_1:62883049-62883068 | Msa1029450:intron | 35.0% |
| ! | TTCTCTTTTACTTCTATGGG+GGG | - | chr7_1:62883050-62883069 | Msa1029450:intron | 35.0% |
| CAATGCAAGATCAAATTTCC+AGG | - | chr7_1:62881911-62881930 | Msa1029450:intron | 35.0% | |
| ! | AGAGTGCTAATTACAATGCA+AGG | - | chr7_1:62881898-62881917 | Msa1029450:intron | 35.0% |
| !!! | GTAGTATACTTTTGGAGTTC+TGG | + | chr7_1:62882078-62882097 | None:intergenic | 35.0% |
| CAATAAGATTATCACGTTCC+TGG | - | chr7_1:62882147-62882166 | Msa1029450:CDS | 35.0% | |
| ! | TGAAATGCCATTTGTTCGTT+TGG | - | chr7_1:62882446-62882465 | Msa1029450:CDS | 35.0% |
| AAAAACTCCATTGAAAGCAG+AGG | + | chr7_1:62882635-62882654 | None:intergenic | 35.0% | |
| ! | AGCGATGTAATGCTATGTTT+TGG | - | chr7_1:62882844-62882863 | Msa1029450:intron | 35.0% |
| !! | ATACAACATATGGAAGCATC+AGG | + | chr7_1:62882909-62882928 | None:intergenic | 35.0% |
| TGCTTCCATATGTTGTATGA+AGG | - | chr7_1:62882911-62882930 | Msa1029450:intron | 35.0% | |
| GCTTCCATATGTTGTATGAA+GGG | - | chr7_1:62882912-62882931 | Msa1029450:intron | 35.0% | |
| CTTCCATATGTTGTATGAAG+GGG | - | chr7_1:62882913-62882932 | Msa1029450:intron | 35.0% | |
| GCAATAAAATGAGAGCTCTT+CGG | + | chr7_1:62883005-62883024 | None:intergenic | 35.0% | |
| ! | GTTCTCTTTTACTTCTATGG+GGG | - | chr7_1:62883049-62883068 | Msa1029450:intron | 35.0% |
| ! | TTCTCTTTTACTTCTATGGG+GGG | - | chr7_1:62883050-62883069 | Msa1029450:intron | 35.0% |
| CAATGCAAGGTCAAATTTCC+AGG | - | chr7_1:62882041-62882060 | Msa1029450:intron | 40.0% | |
| TGAAATAGGCCGCTTGAAAA+TGG | + | chr7_1:62882121-62882140 | None:intergenic | 40.0% | |
| GAAATACCATCTTCGTATCG+AGG | - | chr7_1:62882192-62882211 | Msa1029450:CDS | 40.0% | |
| TCCAATTCCTCTGCTTTCAA+TGG | - | chr7_1:62882625-62882644 | Msa1029450:intron | 40.0% | |
| TCCATTGAAAGCAGAGGAAT+TGG | + | chr7_1:62882629-62882648 | None:intergenic | 40.0% | |
| TTTGATAGGGGTGAATTGCA+AGG | - | chr7_1:62882653-62882672 | Msa1029450:CDS | 40.0% | |
| CTTCCCCTTCATACAACATA+TGG | + | chr7_1:62882919-62882938 | None:intergenic | 40.0% | |
| TCAAAAAGACTGCGAAGCAA+AGG | + | chr7_1:62882972-62882991 | None:intergenic | 40.0% | |
| ! | TTGCTTCGCAGTCTTTTTGA+TGG | - | chr7_1:62882972-62882991 | Msa1029450:intron | 40.0% |
| ! | ATTGAGTCCGGTTTGAATCA+AGG | - | chr7_1:62883077-62883096 | Msa1029450:intron | 40.0% |
| TAACAAAATGAGGAGGACCA+GGG | + | chr7_1:62883103-62883122 | None:intergenic | 40.0% | |
| ATAACAAAATGAGGAGGACC+AGG | + | chr7_1:62883104-62883123 | None:intergenic | 40.0% | |
| !! | CCTCCTCATTTTGTTATCTC+CGG | - | chr7_1:62883107-62883126 | Msa1029450:intron | 40.0% |
| TGACCGGAGATAACAAAATG+AGG | + | chr7_1:62883113-62883132 | None:intergenic | 40.0% | |
| AATGCGATGGTAATTCTGAC+CGG | + | chr7_1:62883129-62883148 | None:intergenic | 40.0% | |
| CCTGAAATGAGATAGACGAT+TGG | + | chr7_1:62883228-62883247 | None:intergenic | 40.0% | |
| CCAATCGTCTATCTCATTTC+AGG | - | chr7_1:62883225-62883244 | Msa1029450:intron | 40.0% | |
| !!! | GTTTGCTTGTTTTGATGCAG+TGG | - | chr7_1:62883396-62883415 | Msa1029450:intron | 40.0% |
| CAATGCAAGGTCAAATTTCC+AGG | - | chr7_1:62882041-62882060 | Msa1029450:intron | 40.0% | |
| TGAAATAGGCCGCTTGAAAA+TGG | + | chr7_1:62882121-62882140 | None:intergenic | 40.0% | |
| GAAATACCATCTTCGTATCG+AGG | - | chr7_1:62882192-62882211 | Msa1029450:CDS | 40.0% | |
| TCCAATTCCTCTGCTTTCAA+TGG | - | chr7_1:62882625-62882644 | Msa1029450:intron | 40.0% | |
| TCCATTGAAAGCAGAGGAAT+TGG | + | chr7_1:62882629-62882648 | None:intergenic | 40.0% | |
| TTTGATAGGGGTGAATTGCA+AGG | - | chr7_1:62882653-62882672 | Msa1029450:CDS | 40.0% | |
| CTTCCCCTTCATACAACATA+TGG | + | chr7_1:62882919-62882938 | None:intergenic | 40.0% | |
| TCAAAAAGACTGCGAAGCAA+AGG | + | chr7_1:62882972-62882991 | None:intergenic | 40.0% | |
| ! | TTGCTTCGCAGTCTTTTTGA+TGG | - | chr7_1:62882972-62882991 | Msa1029450:intron | 40.0% |
| ! | ATTGAGTCCGGTTTGAATCA+AGG | - | chr7_1:62883077-62883096 | Msa1029450:intron | 40.0% |
| TAACAAAATGAGGAGGACCA+GGG | + | chr7_1:62883103-62883122 | None:intergenic | 40.0% | |
| ATAACAAAATGAGGAGGACC+AGG | + | chr7_1:62883104-62883123 | None:intergenic | 40.0% | |
| !! | CCTCCTCATTTTGTTATCTC+CGG | - | chr7_1:62883107-62883126 | Msa1029450:intron | 40.0% |
| TGACCGGAGATAACAAAATG+AGG | + | chr7_1:62883113-62883132 | None:intergenic | 40.0% | |
| AATGCGATGGTAATTCTGAC+CGG | + | chr7_1:62883129-62883148 | None:intergenic | 40.0% | |
| CCTGAAATGAGATAGACGAT+TGG | + | chr7_1:62883228-62883247 | None:intergenic | 40.0% | |
| CCAATCGTCTATCTCATTTC+AGG | - | chr7_1:62883225-62883244 | Msa1029450:intron | 40.0% | |
| !!! | GTTTGCTTGTTTTGATGCAG+TGG | - | chr7_1:62883396-62883415 | Msa1029450:intron | 40.0% |
| TGGATTGTGTTTGCAGACCA+AGG | - | chr7_1:62882563-62882582 | Msa1029450:intron | 45.0% | |
| AGCATTACATCGCTGACACA+CGG | + | chr7_1:62882838-62882857 | None:intergenic | 45.0% | |
| GGAGGAGGTTCAATCATAGA+TGG | + | chr7_1:62882951-62882970 | None:intergenic | 45.0% | |
| AAAAGACTGCGAAGCAAAGG+AGG | + | chr7_1:62882969-62882988 | None:intergenic | 45.0% | |
| ! | CTTCGCAGTCTTTTTGATGG+TGG | - | chr7_1:62882975-62882994 | Msa1029450:intron | 45.0% |
| ATGGGGGGTAAAATTGAGTC+CGG | - | chr7_1:62883065-62883084 | Msa1029450:intron | 45.0% | |
| CCGGAGATAACAAAATGAGG+AGG | + | chr7_1:62883110-62883129 | None:intergenic | 45.0% | |
| GGTCAGAATTACCATCGCAT+TGG | - | chr7_1:62883128-62883147 | Msa1029450:intron | 45.0% | |
| TGGATTGTGTTTGCAGACCA+AGG | - | chr7_1:62882563-62882582 | Msa1029450:intron | 45.0% | |
| AGCATTACATCGCTGACACA+CGG | + | chr7_1:62882838-62882857 | None:intergenic | 45.0% | |
| GGAGGAGGTTCAATCATAGA+TGG | + | chr7_1:62882951-62882970 | None:intergenic | 45.0% | |
| AAAAGACTGCGAAGCAAAGG+AGG | + | chr7_1:62882969-62882988 | None:intergenic | 45.0% | |
| ! | CTTCGCAGTCTTTTTGATGG+TGG | - | chr7_1:62882975-62882994 | Msa1029450:intron | 45.0% |
| ATGGGGGGTAAAATTGAGTC+CGG | - | chr7_1:62883065-62883084 | Msa1029450:intron | 45.0% | |
| CCGGAGATAACAAAATGAGG+AGG | + | chr7_1:62883110-62883129 | None:intergenic | 45.0% | |
| GGTCAGAATTACCATCGCAT+TGG | - | chr7_1:62883128-62883147 | Msa1029450:intron | 45.0% | |
| !! | ATAATATTATAAATTACAAA+TGG | + | chr7_1:62882765-62882784 | None:intergenic | 5.0% |
| !! | ATAATATTATAAATTACAAA+TGG | + | chr7_1:62882765-62882784 | None:intergenic | 5.0% |
| ATTATCACGTTCCTGGCCCT+GGG | - | chr7_1:62882154-62882173 | Msa1029450:CDS | 50.0% | |
| GCACATCCTCGATACGAAGA+TGG | + | chr7_1:62882201-62882220 | None:intergenic | 50.0% | |
| GCAGACCAAGGTTTCACTGT+TGG | - | chr7_1:62882575-62882594 | Msa1029450:intron | 50.0% | |
| CACTGCCAACAGTGAAACCT+TGG | + | chr7_1:62882583-62882602 | None:intergenic | 50.0% | |
| CAAGGTTTCACTGTTGGCAG+TGG | - | chr7_1:62882581-62882600 | Msa1029450:intron | 50.0% | |
| GCAGAGGAATTGGATCACGA+GGG | + | chr7_1:62882619-62882638 | None:intergenic | 50.0% | |
| AGCAGAGGAATTGGATCACG+AGG | + | chr7_1:62882620-62882639 | None:intergenic | 50.0% | |
| ACCAGGGCCTTGATTCAAAC+CGG | + | chr7_1:62883087-62883106 | None:intergenic | 50.0% | |
| GAAGAAGGCTACCAATGCGA+TGG | + | chr7_1:62883142-62883161 | None:intergenic | 50.0% | |
| TTCTTCCAGCTGAAGGACAG+CGG | - | chr7_1:62883156-62883175 | Msa1029450:intron | 50.0% | |
| TTGATGCAGTGGTCGTTCTC+AGG | - | chr7_1:62883407-62883426 | Msa1029450:intron | 50.0% | |
| ATTATCACGTTCCTGGCCCT+GGG | - | chr7_1:62882154-62882173 | Msa1029450:CDS | 50.0% | |
| GCACATCCTCGATACGAAGA+TGG | + | chr7_1:62882201-62882220 | None:intergenic | 50.0% | |
| GCAGACCAAGGTTTCACTGT+TGG | - | chr7_1:62882575-62882594 | Msa1029450:intron | 50.0% | |
| CACTGCCAACAGTGAAACCT+TGG | + | chr7_1:62882583-62882602 | None:intergenic | 50.0% | |
| CAAGGTTTCACTGTTGGCAG+TGG | - | chr7_1:62882581-62882600 | Msa1029450:intron | 50.0% | |
| GCAGAGGAATTGGATCACGA+GGG | + | chr7_1:62882619-62882638 | None:intergenic | 50.0% | |
| AGCAGAGGAATTGGATCACG+AGG | + | chr7_1:62882620-62882639 | None:intergenic | 50.0% | |
| ACCAGGGCCTTGATTCAAAC+CGG | + | chr7_1:62883087-62883106 | None:intergenic | 50.0% | |
| GAAGAAGGCTACCAATGCGA+TGG | + | chr7_1:62883142-62883161 | None:intergenic | 50.0% | |
| TTCTTCCAGCTGAAGGACAG+CGG | - | chr7_1:62883156-62883175 | Msa1029450:intron | 50.0% | |
| TTGATGCAGTGGTCGTTCTC+AGG | - | chr7_1:62883407-62883426 | Msa1029450:intron | 50.0% | |
| GATTATCACGTTCCTGGCCC+TGG | - | chr7_1:62882153-62882172 | Msa1029450:CDS | 55.0% | |
| TTATCACGTTCCTGGCCCTG+GGG | - | chr7_1:62882155-62882174 | Msa1029450:CDS | 55.0% | |
| CCTGCTCTTAAGAAGCCCCA+GGG | + | chr7_1:62882173-62882192 | None:intergenic | 55.0% | |
| TCCTGCTCTTAAGAAGCCCC+AGG | + | chr7_1:62882174-62882193 | None:intergenic | 55.0% | |
| !! | GGAAGCATCAGGAGTAGCAG+TGG | + | chr7_1:62882898-62882917 | None:intergenic | 55.0% |
| AGACTGCGAAGCAAAGGAGG+AGG | + | chr7_1:62882966-62882985 | None:intergenic | 55.0% | |
| ! | TCCGGTTTGAATCAAGGCCC+TGG | - | chr7_1:62883083-62883102 | Msa1029450:intron | 55.0% |
| GGTAGCCTTCTTCCAGCTGA+AGG | - | chr7_1:62883149-62883168 | Msa1029450:intron | 55.0% | |
| GCTGTCCTTCAGCTGGAAGA+AGG | + | chr7_1:62883157-62883176 | None:intergenic | 55.0% | |
| GATTATCACGTTCCTGGCCC+TGG | - | chr7_1:62882153-62882172 | Msa1029450:CDS | 55.0% | |
| TTATCACGTTCCTGGCCCTG+GGG | - | chr7_1:62882155-62882174 | Msa1029450:CDS | 55.0% | |
| CCTGCTCTTAAGAAGCCCCA+GGG | + | chr7_1:62882173-62882192 | None:intergenic | 55.0% | |
| TCCTGCTCTTAAGAAGCCCC+AGG | + | chr7_1:62882174-62882193 | None:intergenic | 55.0% | |
| !! | GGAAGCATCAGGAGTAGCAG+TGG | + | chr7_1:62882898-62882917 | None:intergenic | 55.0% |
| AGACTGCGAAGCAAAGGAGG+AGG | + | chr7_1:62882966-62882985 | None:intergenic | 55.0% | |
| ! | TCCGGTTTGAATCAAGGCCC+TGG | - | chr7_1:62883083-62883102 | Msa1029450:intron | 55.0% |
| GGTAGCCTTCTTCCAGCTGA+AGG | - | chr7_1:62883149-62883168 | Msa1029450:intron | 55.0% | |
| GCTGTCCTTCAGCTGGAAGA+AGG | + | chr7_1:62883157-62883176 | None:intergenic | 55.0% | |
| TCTTAAGAAGCCCCAGGGCC+AGG | + | chr7_1:62882168-62882187 | None:intergenic | 60.0% | |
| CCCTGGGGCTTCTTAAGAGC+AGG | - | chr7_1:62882170-62882189 | Msa1029450:CDS | 60.0% | |
| GGTATGGAGAACGTGCGCAG+AGG | - | chr7_1:62882865-62882884 | Msa1029450:intron | 60.0% | |
| TCTTAAGAAGCCCCAGGGCC+AGG | + | chr7_1:62882168-62882187 | None:intergenic | 60.0% | |
| CCCTGGGGCTTCTTAAGAGC+AGG | - | chr7_1:62882170-62882189 | Msa1029450:CDS | 60.0% | |
| GGTATGGAGAACGTGCGCAG+AGG | - | chr7_1:62882865-62882884 | Msa1029450:intron | 60.0% | |
| TTGGGCCGCTGTCCTTCAGC+TGG | + | chr7_1:62883164-62883183 | None:intergenic | 65.0% | |
| TTGGGCCGCTGTCCTTCAGC+TGG | + | chr7_1:62883164-62883183 | None:intergenic | 65.0% | |
| GGAGAACGTGCGCAGAGGCG+TGG | - | chr7_1:62882870-62882889 | Msa1029450:intron | 70.0% | |
| GGAGAACGTGCGCAGAGGCG+TGG | - | chr7_1:62882870-62882889 | Msa1029450:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 62881795 | 62883512 | 62881795 | ID=Msa1029450;Name=Msa1029450 |
| chr7_1 | mRNA | 62881795 | 62883512 | 62881795 | ID=Msa1029450-mRNA-1;Parent=Msa1029450;Name=Msa1029450-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|0|0|0.83|0.8|0.83|6|0|252 |
| chr7_1 | exon | 62883501 | 62883512 | 62883501 | ID=Msa1029450-mRNA-1:exon:13559;Parent=Msa1029450-mRNA-1 |
| chr7_1 | exon | 62883375 | 62883407 | 62883375 | ID=Msa1029450-mRNA-1:exon:13558;Parent=Msa1029450-mRNA-1 |
| chr7_1 | exon | 62883245 | 62883277 | 62883245 | ID=Msa1029450-mRNA-1:exon:13557;Parent=Msa1029450-mRNA-1 |
| chr7_1 | exon | 62882633 | 62882774 | 62882633 | ID=Msa1029450-mRNA-1:exon:13556;Parent=Msa1029450-mRNA-1 |
| chr7_1 | exon | 62882061 | 62882499 | 62882061 | ID=Msa1029450-mRNA-1:exon:13555;Parent=Msa1029450-mRNA-1 |
| chr7_1 | exon | 62881795 | 62881891 | 62881795 | ID=Msa1029450-mRNA-1:exon:13554;Parent=Msa1029450-mRNA-1 |
| chr7_1 | CDS | 62883501 | 62883512 | 62883501 | ID=Msa1029450-mRNA-1:cds;Parent=Msa1029450-mRNA-1 |
| chr7_1 | CDS | 62883375 | 62883407 | 62883375 | ID=Msa1029450-mRNA-1:cds;Parent=Msa1029450-mRNA-1 |
| chr7_1 | CDS | 62883245 | 62883277 | 62883245 | ID=Msa1029450-mRNA-1:cds;Parent=Msa1029450-mRNA-1 |
| chr7_1 | CDS | 62882633 | 62882774 | 62882633 | ID=Msa1029450-mRNA-1:cds;Parent=Msa1029450-mRNA-1 |
| chr7_1 | CDS | 62882061 | 62882499 | 62882061 | ID=Msa1029450-mRNA-1:cds;Parent=Msa1029450-mRNA-1 |
| chr7_1 | CDS | 62881795 | 62881891 | 62881795 | ID=Msa1029450-mRNA-1:cds;Parent=Msa1029450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
