AlfalfaGEDB | Msa1029470

M. sativa cultivar zhongmu-4 / Msa1029470

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010941 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0031348 GO:0033612 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0060548 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564
PFAM: PF08263.15

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1029470	XP_003624238.1	96.916	616	17	2	1	615	1	615	0.0	1225

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1029470	sp\|Q9ASS4\|Y5838_ARATH	62.226	593	212	6	30	611	29	620	0.0	749

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1029470	A2Q5X8	96.916	616	17	2	1	615	1	615	0.0	1225

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0038720	Msa1029470	0.805923	1.056030e-49	-8.615850e-47
Msa0086590	Msa1029470	0.802153	6.421142e-49	-8.615850e-47
Msa0790680	Msa1029470	0.801317	9.533172e-49	-8.615850e-47
Msa1029470	Msa1068320	0.849661	2.801824e-60	-8.615850e-47
Msa1029470	Msa1156450	0.865690	4.917130e-65	-8.615850e-47
Msa1029470	Msa1255060	0.810223	1.282901e-50	-8.615850e-47
Msa1029470	Msa1256410	0.809305	2.020276e-50	-8.615850e-47

Showing 1 to 7 of 7 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1029470	MtrunA17_Chr7g0249841	96.916	616	17	2	1	615	1	615	0.0	1225
Msa1029470	MtrunA17_Chr8g0337671	77.435	616	135	4	1	613	3	617	0.0	955
Msa1029470	MtrunA17_Chr6g0452221	47.535	568	287	7	30	591	26	588	5.88e-180	522
Msa1029470	MtrunA17_Chr4g0049181	43.709	604	270	11	12	580	35	603	3.93e-163	481
Msa1029470	MtrunA17_Chr3g0129391	40.267	524	272	12	102	591	651	1167	8.63e-108	351
Msa1029470	MtrunA17_Chr3g0129391	33.987	153	74	3	66	191	399	551	1.04e-13	74.7
Msa1029470	MtrunA17_Chr1g0203631	38.930	542	285	10	81	580	731	1268	1.03e-101	335
Msa1029470	MtrunA17_Chr1g0203631	37.594	133	72	2	82	203	552	684	2.18e-12	70.5
Msa1029470	MtrunA17_Chr1g0203631	32.667	150	94	3	66	209	463	611	1.02e-11	68.6
Msa1029470	MtrunA17_Chr1g0203631	30.332	211	122	6	56	251	484	684	5.78e-11	65.9

Showing 1 to 10 of 754 entries

Previous1 2 3 4 5…76Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1029470	AT5G48380.1	62.226	593	212	6	30	611	29	620	0.0	749
Msa1029470	AT3G28450.1	45.769	579	303	6	18	591	19	591	2.30e-179	521
Msa1029470	AT1G69990.1	44.561	570	295	7	29	589	18	575	9.07e-177	514
Msa1029470	AT1G27190.1	45.552	562	298	4	29	584	24	583	3.54e-176	513
Msa1029470	AT5G07280.1	39.350	554	285	13	56	580	661	1192	7.65e-106	346
Msa1029470	AT5G07280.1	36.508	126	74	2	89	209	460	584	7.94e-12	69.3
Msa1029470	AT5G07280.1	38.760	129	74	2	84	208	587	714	3.39e-11	67.0
Msa1029470	AT4G39400.1	38.246	536	290	13	97	599	650	1177	5.84e-103	338
Msa1029470	AT4G39400.1	36.806	144	67	3	71	191	411	553	5.02e-16	82.8
Msa1029470	AT3G13380.1	39.526	506	269	12	102	580	640	1135	1.87e-101	333

Showing 1 to 10 of 664 entries

Previous1 2 3 4 5…67Next

Find 166 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCAATGTTATTGGGAC+TGG	0.457963	7_1:-62893863	Msa1029470:CDS
AAACAATTATTTGCAGAATT+GGG	0.363885	7_1:-62895389	Msa1029470:CDS
AAAGATATAAGAGCAAAATA+AGG	0.409011	7_1:+62892740	None:intergenic
AAAGGAGATGTTTATAGCTT+TGG	0.303465	7_1:-62893320	Msa1029470:CDS
AAATGGGCAAGAATTCTTAA+GGG	0.502254	7_1:-62894725	Msa1029470:CDS
AAATTACAACAAACCATAGG+AGG	0.560706	7_1:-62892579	Msa1029470:three_prime_UTR
AAATTCTGGAGGAATTTGAC+CGG	0.582703	7_1:+62895039	None:intergenic
AAATTTCCTTTAAAAGTTTC+TGG	0.209161	7_1:+62893242	None:intergenic
AACAGTGCGACATCGTAACT+TGG	0.531048	7_1:-62893723	Msa1029470:CDS
AACAGTGCTATGCTATGCTA+TGG	0.508983	7_1:-62895659	Msa1029470:five_prime_UTR

Showing 1 to 10 of 166 entries

Previous1 2 3 4 5…17Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GTGAATCAAAGAAAGAAGAT+GGG	+	chr7_1:62892690-62892709	None:intergenic	30.0%
AGTGAATCAAAGAAAGAAGA+TGG	+	chr7_1:62892691-62892710	None:intergenic	30.0%
TCTTCTTTCTTTGATTCACT+TGG	-	chr7_1:62892691-62892710	Msa1029470:three_prime_UTR	30.0%
GAGTATTCAAATACTAACCT+GGG	+	chr7_1:62892806-62892825	None:intergenic	30.0%
TGAGTATTCAAATACTAACC+TGG	+	chr7_1:62892807-62892826	None:intergenic	30.0%
CTTGCATATTCAAACTTTAC+TGG	-	chr7_1:62892885-62892904	Msa1029470:three_prime_UTR	30.0%
ATTCATTGTTCACACCATAA+AGG	+	chr7_1:62892973-62892992	None:intergenic	30.0%
AAGCTAAGAACAAATTATCC+AGG	+	chr7_1:62893204-62893223	None:intergenic	30.0%
CGACATCTTATGCTTAAAAA+GGG	-	chr7_1:62893350-62893369	Msa1029470:CDS	30.0%
GATTTCAACAACAAAACTGA+AGG	-	chr7_1:62893417-62893436	Msa1029470:CDS	30.0%

Showing 1 to 10 of 266 entries

Previous1 2 3 4 5…27Next

Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	62892545	62896261	62892545	ID=Msa1029470;Name=Msa1029470
chr7_1	mRNA	62892545	62896261	62892545	ID=Msa1029470-mRNA-1;Parent=Msa1029470;Name=Msa1029470-mRNA-1;_AED=0.02;_eAED=0.02;_QI=302\|1\|1\|1\|0.5\|0.33\|3\|405\|615
chr7_1	exon	62892545	62893957	62892545	ID=Msa1029470-mRNA-1:exon:13574;Parent=Msa1029470-mRNA-1
chr7_1	exon	62894709	62895682	62894709	ID=Msa1029470-mRNA-1:exon:13573;Parent=Msa1029470-mRNA-1
chr7_1	exon	62896094	62896261	62896094	ID=Msa1029470-mRNA-1:exon:13572;Parent=Msa1029470-mRNA-1
chr7_1	five_prime_UTR	62896094	62896261	62896094	ID=Msa1029470-mRNA-1:five_prime_utr;Parent=Msa1029470-mRNA-1
chr7_1	five_prime_UTR	62895549	62895682	62895549	ID=Msa1029470-mRNA-1:five_prime_utr;Parent=Msa1029470-mRNA-1
chr7_1	CDS	62894709	62895548	62894709	ID=Msa1029470-mRNA-1:cds;Parent=Msa1029470-mRNA-1
chr7_1	CDS	62892950	62893957	62892950	ID=Msa1029470-mRNA-1:cds;Parent=Msa1029470-mRNA-1
chr7_1	three_prime_UTR	62892545	62892949	62892545	ID=Msa1029470-mRNA-1:three_prime_utr;Parent=Msa1029470-mRNA-1

Gene Sequence

>Msa1029470

ATGGTTTTGAGTAGCAGAATTTTCAGTACTCCTATTATTGTTAGTTTCTCACTGCTAGTTATTAGTTGTGGCATCACCTACGGCACGGAGACCGACATCTTATGCTTAAAAAGGGTAAAAGAATCACTTAAAGACCCAAACAATTATTTGCAGAATTGGGATTTCAACAACAAAACTGAAGGGTCTATCTGCAAGTTCACTGGTGTTGAATGTTGGCATCCTGATGAAAATAGGGTTTTGAATCTCAAACTTTCTAATATGGGACTTAAGGGCGAGTTTCCTCGCGGTATTCAAAATTGTTCGAGCTTAACAGGATTAGATTTTTCGTTGAACAGCCTCTCTAAAACAATTCCGGCCGATGTATCTACCCTTATTGCCTTTGTGACCAATCTTGATCTATCTTCAAATGATTTCACCGGAGAGATCCCCGACTCACTTGCTAATTGTACCTATCTTAATAATCTTAAACTTGACCAGAACCAACTCACCGGTCAAATTCCTCCAGAATTTGCTGGACTCAATCGGCTTAAGACGTTTAGTGTTTCCAACAATCTTTTGTCAGGACAAGTTCCAAATTTTAGACAAGGTATAGTTACGGCAGATAGTTTTGCGAATAATTCAGGACTCTGCGGAGCTCCTTTAGATAGTTGCAAGAGTAAGTCTTCGAAGACTAACACTGCAGTTATAGCTGGAGCAGCTGTTGGTGGTGTGACTCTTGCAGCATTAGGAGTGGGCGTTGGATTGCTCTTCTTTGTACGCAGTGTTTCTCACAGGAAAAAGGAAGAAGATCCTGAAGGAAATAAATGGGCAAGAATTCTTAAGGGAACCAAGAAAATAAAGGTTTCAATGTTTGAGAAGTCAATTTCAAAAATGAACTTGAGTGATCTCATGAAGGCTACTAATAACTTCAGTAAAAGCAATGTTATTGGGACTGGAAGATCTGGAACTGTTTACAAAGCTGTCCTTGACGACGGCACATCACTCATGGTTAAGAGATTACTGGAATCTCAACACTCGGAGCAAGAATTTACAGCTGAGATGGCCACACTAGGAACAGTGCGACATCGTAACTTGGTTCCTCTTTTAGGTTTTTGCCTGGCCAAAAAGGAGAGGCTTTTGGTCTATAAAAATATGCCAAATGGTACTCTTCATGACAAACTACACCCTGATGCTGGCGAGTGCACTATGGAGTGGTCTATAAGGCTCAAAATCGCAATTGGAGCAGCCAAAGGATTCGCATGGCTTCATCACAACTGCAATCCTCGTATCATCCACCGAAACATAAGCTCAAAGTGCATTTTGTTGGATGTAGATTTCGAGCCCAAAATTTCTGATTTTGGCCTTGCAAGATTGATGAACCCAATCGATACCCATTTGAGTACTTTTGTAAATGGTGAGTTTGGCGATTTAGGTTATGTTGCTCCTGAGTATACAACAACTTTGGTGGCTACACCTAAAGGAGATGTTTATAGCTTTGGAACTGTGCTTCTTGAGTTGGTAACAGGTGAAAGACCTACACATATAGCGAAAGCTCCAGAAACTTTTAAAGGAAATTTGGTAGAATGGATTATGCAGCTCTCAGTCAACTCGAAATTAAAAGACGCCATTGATGAATCACTAGTTGGAAAAGGCGTTGATCATGAACTTTTTCAGTTTCTAAAGGTTGCATGTAACTGTGTTGCATCAACTCCAAAGGAGAGACCCACTATGTTTGAAGTATACCAGTTTCTAAGAGACATTGGGAGCAGATATAATTTCATAACTGAGGATGAGATAATGATACTTACAGATACTGGTGATGCTGGTAAGTTGGAAGAACTTATCGTAGCGCGAGAGGGACATAATTGA

Protein sequence

>Msa1029470

MVLSSRIFSTPIIVSFSLLVISCGITYGTETDILCLKRVKESLKDPNNYLQNWDFNNKTEGSICKFTGVECWHPDENRVLNLKLSNMGLKGEFPRGIQNCSSLTGLDFSLNSLSKTIPADVSTLIAFVTNLDLSSNDFTGEIPDSLANCTYLNNLKLDQNQLTGQIPPEFAGLNRLKTFSVSNNLLSGQVPNFRQGIVTADSFANNSGLCGAPLDSCKSKSSKTNTAVIAGAAVGGVTLAALGVGVGLLFFVRSVSHRKKEEDPEGNKWARILKGTKKIKVSMFEKSISKMNLSDLMKATNNFSKSNVIGTGRSGTVYKAVLDDGTSLMVKRLLESQHSEQEFTAEMATLGTVRHRNLVPLLGFCLAKKERLLVYKNMPNGTLHDKLHPDAGECTMEWSIRLKIAIGAAKGFAWLHHNCNPRIIHRNISSKCILLDVDFEPKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYTTTLVATPKGDVYSFGTVLLELVTGERPTHIAKAPETFKGNLVEWIMQLSVNSKLKDAIDESLVGKGVDHELFQFLKVACNCVASTPKERPTMFEVYQFLRDIGSRYNFITEDEIMILTDTGDAGKLEELIVAREGHN*