AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0790680

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0790680 MtrunA17_Chr8g0373031 97.368 760 20 0 1 760 1 760 0.0 1513
Msa0790680 MtrunA17_Chr5g0404311 56.234 770 324 6 1 760 1 767 0.0 838
Msa0790680 MtrunA17_Chr8g0377151 31.557 713 443 11 19 708 19 709 4.54e-99 323
Msa0790680 MtrunA17_Chr3g0122721 32.123 716 436 14 19 709 18 708 6.16e-96 315
Msa0790680 MtrunA17_Chr1g0155261 44.019 209 115 1 19 227 16 222 2.17e-42 154
Msa0790680 MtrunA17_Chr7g0248251 28.457 376 205 12 16 369 44 377 2.98e-29 124
Msa0790680 MtrunA17_Chr4g0031431 24.261 643 380 23 20 611 26 612 3.04e-26 114
Msa0790680 MtrunA17_Chr4g0044411 54.667 75 34 0 276 350 274 348 6.92e-25 110
Msa0790680 MtrunA17_Chr2g0284461 28.041 296 175 10 65 352 104 369 8.57e-24 107
Msa0790680 MtrunA17_Chr1g0199321 53.333 75 35 0 276 350 248 322 9.78e-23 103
Msa0790680 MtrunA17_Chr7g0275081 43.529 85 48 0 274 358 77 161 2.43e-22 100
Msa0790680 MtrunA17_Chr5g0437411 26.946 334 198 12 38 349 58 367 2.79e-22 102
Msa0790680 MtrunA17_Chr3g0106931 47.500 80 42 0 273 352 231 310 2.38e-21 99.8
Msa0790680 MtrunA17_Chr7g0261371 48.718 78 40 0 273 350 239 316 3.14e-21 99.4
Msa0790680 MtrunA17_Chr7g0261371 30.636 173 116 3 538 708 617 787 1.25e-13 74.7
Msa0790680 MtrunA17_Chr4g0013091 21.474 475 283 11 254 708 293 697 2.13e-20 96.3
Msa0790680 MtrunA17_Chr3g0117851 47.561 82 43 0 268 349 268 349 4.14e-20 95.1
Msa0790680 MtrunA17_Chr1g0183781 50.000 70 35 0 273 342 239 308 1.06e-19 94.4
Msa0790680 MtrunA17_Chr1g0183781 30.058 173 119 2 538 709 543 714 2.76e-13 73.6
Msa0790680 MtrunA17_Chr7g0234671 42.391 92 53 0 273 364 76 167 1.28e-19 92.8
Msa0790680 MtrunA17_Chr7g0237931 53.333 75 35 0 276 350 238 312 2.59e-19 92.8
Msa0790680 MtrunA17_Chr5g0413681 44.211 95 52 1 266 359 270 364 5.37e-19 92.0
Msa0790680 MtrunA17_Chr4g0059201 42.708 96 53 1 266 359 308 403 1.07e-18 90.9
Msa0790680 MtrunA17_Chr1g0189811 36.082 97 62 0 276 372 64 160 3.18e-18 88.2
Msa0790680 MtrunA17_Chr1g0198984 50.794 63 31 0 288 350 1 63 5.59e-18 80.5
Msa0790680 MtrunA17_Chr7g0275961 23.235 340 216 7 27 361 41 340 3.30e-17 86.7
Msa0790680 MtrunA17_Chr4g0044631 40.698 86 47 1 276 357 15 100 1.70e-16 82.4
Msa0790680 MtrunA17_Chr5g0420471 40.698 86 47 2 271 352 21 106 1.71e-15 79.7
Msa0790680 MtrunA17_Chr4g0048811 50.746 67 32 1 276 341 6 72 2.01e-15 78.2
Msa0790680 MtrunA17_Chr5g0434171 43.056 72 41 0 271 342 31 102 2.07e-15 79.3
Msa0790680 MtrunA17_Chr3g0110121 37.624 101 57 2 258 352 17 117 2.57e-15 79.3
Msa0790680 MtrunA17_Chr6g0479261 40.698 86 47 2 271 352 21 106 3.22e-15 79.0
Msa0790680 MtrunA17_Chr8g0346441 24.308 325 196 8 28 341 40 325 6.22e-15 79.3
Msa0790680 MtrunA17_Chr5g0435041 27.869 183 127 2 536 713 120 302 9.66e-15 76.6
Msa0790680 MtrunA17_Chr1g0177261 43.478 92 40 4 271 352 5 94 8.46e-14 74.3
Msa0790680 MtrunA17_Chr8g0390311 31.111 135 77 3 242 371 373 496 1.22e-13 75.1
Msa0790680 MtrunA17_Chr2g0280671 47.692 65 34 0 277 341 17 81 2.06e-13 72.8
Msa0790680 MtrunA17_Chr1g0177281 43.478 92 40 4 271 352 5 94 2.53e-13 72.8
Msa0790680 MtrunA17_Chr1g0177271 45.679 81 36 3 271 345 5 83 3.00e-13 72.8
Msa0790680 MtrunA17_Chr7g0267501 22.881 472 276 17 273 720 6 413 3.60e-13 72.4
Msa0790680 MtrunA17_Chr5g0400971 48.485 66 34 0 276 341 68 133 3.72e-13 72.4
Msa0790680 MtrunA17_Chr3g0129811 35.955 89 50 1 260 341 61 149 6.69e-13 72.0
Msa0790680 MtrunA17_Chr1g0177301 44.578 83 40 3 276 352 7 89 2.15e-12 69.7
Msa0790680 MtrunA17_Chr3g0111451 25.904 166 118 2 549 709 154 319 4.28e-12 68.9
Msa0790680 MtrunA17_Chr1g0152291 46.970 66 35 0 276 341 46 111 9.38e-12 67.8
Msa0790680 MtrunA17_Chr2g0322021 42.353 85 41 3 276 352 7 91 1.33e-11 67.4
Msa0790680 MtrunA17_Chr8g0384041 33.654 104 67 1 273 374 8 111 1.51e-11 67.4
Msa0790680 MtrunA17_Chr1g0196911 40.278 72 42 1 275 345 506 577 1.81e-11 68.2
Msa0790680 MtrunA17_Chr2g0290151 27.381 168 119 2 549 714 289 455 2.34e-11 67.0
Msa0790680 MtrunA17_Chr3g0144071 32.609 92 57 1 277 363 32 123 5.55e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0790680 AT4G36550.1 38.873 710 365 13 15 713 10 661 2.14e-139 427
Msa0790680 AT1G67530.2 31.551 748 452 18 19 739 17 731 1.36e-98 323
Msa0790680 AT1G67530.1 31.551 748 452 18 19 739 17 731 1.36e-98 323
Msa0790680 AT1G67530.4 31.551 748 452 18 19 739 17 731 1.36e-98 323
Msa0790680 AT1G24330.1 32.153 706 448 15 19 709 17 706 1.77e-97 319
Msa0790680 AT1G24330.2 32.153 706 448 15 19 709 17 706 1.77e-97 319
Msa0790680 AT1G67530.3 34.783 506 288 12 19 506 17 498 1.42e-83 276
Msa0790680 AT1G27910.1 28.947 722 480 11 4 710 2 705 1.58e-79 271
Msa0790680 AT5G67340.1 24.733 469 305 10 276 708 241 697 2.44e-35 143
Msa0790680 AT5G67340.2 24.733 469 305 10 276 708 241 697 2.44e-35 143
Msa0790680 AT3G46510.1 25.246 610 361 20 22 587 30 588 5.16e-32 133
Msa0790680 AT5G42340.1 31.724 290 152 9 66 350 117 365 2.40e-31 130
Msa0790680 AT1G71020.2 25.968 439 256 10 276 708 96 471 8.11e-28 118
Msa0790680 AT1G71020.1 25.968 439 256 10 276 708 244 619 3.93e-27 117
Msa0790680 AT3G54850.1 24.601 439 267 10 276 712 249 625 2.12e-26 115
Msa0790680 AT3G07360.1 56.000 75 33 0 273 347 72 146 1.61e-24 108
Msa0790680 AT1G23030.1 50.667 75 37 0 276 350 242 316 5.12e-23 104
Msa0790680 AT2G23140.3 43.333 90 51 0 265 354 31 120 8.75e-23 104
Msa0790680 AT2G23140.3 25.714 175 122 3 536 709 461 628 1.18e-11 68.6
Msa0790680 AT2G23140.5 43.333 90 51 0 265 354 31 120 8.75e-23 104
Msa0790680 AT2G23140.5 25.714 175 122 3 536 709 461 628 1.18e-11 68.6
Msa0790680 AT2G23140.1 43.333 90 51 0 265 354 223 312 1.15e-22 104
Msa0790680 AT2G23140.1 26.519 181 131 2 530 709 641 820 2.33e-11 67.8
Msa0790680 AT2G23140.2 43.333 90 51 0 265 354 220 309 1.17e-22 104
Msa0790680 AT2G23140.2 26.519 181 131 2 530 709 638 817 2.23e-11 68.2
Msa0790680 AT2G23140.4 43.333 90 51 0 265 354 220 309 1.17e-22 104
Msa0790680 AT2G23140.4 26.519 181 131 2 530 709 638 817 2.23e-11 68.2
Msa0790680 AT2G28830.1 52.632 76 36 0 275 350 184 259 4.50e-22 101
Msa0790680 AT1G29340.1 24.520 469 280 11 273 727 303 711 1.94e-21 100
Msa0790680 AT1G10560.1 41.905 105 60 1 252 355 264 368 6.34e-20 95.1
Msa0790680 AT1G49780.1 35.256 156 78 4 276 427 15 151 8.38e-19 90.1
Msa0790680 AT5G01830.1 50.667 75 35 1 276 350 275 347 3.70e-17 86.3
Msa0790680 AT3G54790.2 38.272 81 50 0 273 353 200 280 3.92e-17 86.3
Msa0790680 AT3G54790.3 38.272 81 50 0 273 353 236 316 5.73e-17 85.9
Msa0790680 AT3G54790.1 38.272 81 50 0 273 353 236 316 5.73e-17 85.9
Msa0790680 AT3G19380.1 37.838 111 59 4 276 381 15 120 1.22e-15 80.5
Msa0790680 AT1G66160.1 45.333 75 41 0 268 342 26 100 2.15e-15 79.7
Msa0790680 AT1G60190.1 38.889 90 55 0 270 359 273 362 9.70e-15 78.6
Msa0790680 AT5G18340.1 39.080 87 52 1 266 352 65 150 1.77e-14 77.0
Msa0790680 AT3G61390.4 41.096 73 43 0 275 347 278 350 4.26e-14 75.1
Msa0790680 AT5G18320.1 39.326 89 53 1 265 353 62 149 8.09e-14 75.1
Msa0790680 AT3G61390.2 41.096 73 43 0 275 347 353 425 9.69e-14 74.7
Msa0790680 AT4G21350.1 38.679 106 60 2 276 378 6 109 1.24e-13 73.9
Msa0790680 AT3G49810.1 46.970 66 35 0 276 341 65 130 1.34e-13 74.3
Msa0790680 AT5G09800.1 40.260 77 46 0 265 341 1 77 3.02e-13 72.8
Msa0790680 AT5G37490.1 43.284 67 38 0 276 342 32 98 4.44e-13 72.4
Msa0790680 AT5G18330.1 34.783 92 59 1 268 359 58 148 1.13e-12 71.2
Msa0790680 AT3G52450.1 41.463 82 43 2 276 352 8 89 3.38e-12 69.7
Msa0790680 AT5G65920.1 46.970 66 35 0 276 341 61 126 3.79e-12 69.7
Msa0790680 AT5G65920.2 46.970 66 35 0 276 341 61 126 3.79e-12 69.7
Msa0790680 AT2G35930.1 41.463 82 43 2 276 352 13 94 6.40e-12 68.9
Msa0790680 AT3G18710.1 42.029 69 40 0 273 341 10 78 8.42e-12 68.6
Msa0790680 AT3G03440.1 26.776 183 128 2 536 712 167 349 2.74e-11 66.6
Msa0790680 AT1G01660.1 40.845 71 42 0 275 345 497 567 2.86e-11 67.4
Msa0790680 AT1G01660.2 40.845 71 42 0 275 345 498 568 2.89e-11 67.4
Msa0790680 AT3G11840.1 37.963 108 60 4 276 378 11 116 3.19e-11 67.0

Find 192 sgRNAs with CRISPR-Local

Find 401 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACTCCTAACGTTGCTTTAA+AGG 0.124667 5_3:-1539327 Msa0790680:CDS
AGGCAAAAGTTGAATCTTTA+TGG 0.178342 5_3:+1542573 None:intergenic
ATGCGTGCCCGATATCTTTA+AGG 0.190954 5_3:-1539475 Msa0790680:CDS
CTAATGACTTTCTTGCCTTT+TGG 0.227136 5_3:+1540482 None:intergenic
ACTGGGCTCTCCTTATTATA+AGG 0.232353 5_3:-1537310 Msa0790680:three_prime_UTR
ATATACAATTGTTGCTTCTA+TGG 0.238803 5_3:+1542322 None:intergenic
ACGAGGTCATTATTGAATTT+AGG 0.253330 5_3:+1542524 None:intergenic
AGTTGTCTGCTGGGTAATTT+TGG 0.256943 5_3:-1537149 Msa0790680:three_prime_UTR
GTGCTCAGAAATCTCATAAC+TGG 0.287881 5_3:+1538879 None:intergenic
TACATCAACCTTAAAGATAT+CGG 0.292726 5_3:+1539467 None:intergenic
TTCTAACCCTTGCTTGGCTT+TGG 0.295136 5_3:+1537054 None:intergenic
AGCTGCAATGTTCGCTTTAT+CGG 0.305764 5_3:+1537952 None:intergenic
GATCCTGTTGTCATTGCTTC+AGG 0.312409 5_3:-1539443 Msa0790680:CDS
ACTAACCCATGAAAAGTAAA+AGG 0.312904 5_3:+1542553 None:intergenic
CCGGAATGTCCCTTATAATA+AGG 0.319288 5_3:+1537300 None:intergenic
TTGTATCTTCTGATAAAGTA+TGG 0.319394 5_3:-1539680 Msa0790680:CDS
GGAATATTGTGAGTTGGTTA+TGG 0.320822 5_3:-1537585 Msa0790680:CDS
CTCGAATAGTTGATGATCTT+AGG 0.321799 5_3:-1539955 Msa0790680:CDS
GTCACTTCCATTAGGAGTTT+CGG 0.334044 5_3:-1539215 Msa0790680:CDS
ATGTCTTCCGCTTGCCTACT+TGG 0.335422 5_3:+1539257 None:intergenic
TGGAGAAGCTCTTGCTATAC+TGG 0.337972 5_3:-1537996 Msa0790680:CDS
TCTTGAGAGAAGGGGAGAAA+AGG 0.344358 5_3:+1537011 None:intergenic
CTTGAGAGAAGGGGAGAAAA+GGG 0.355133 5_3:+1537012 None:intergenic
GATCTTAGTAACGTATCATT+TGG 0.355512 5_3:-1539161 Msa0790680:CDS
AGTCATATATACAATAATAA+TGG 0.356246 5_3:+1536892 None:intergenic
TTCTTTCATAAGTTGTCTGC+TGG 0.357222 5_3:-1537159 Msa0790680:three_prime_UTR
CCTTATTATAAGGGACATTC+CGG 0.366375 5_3:-1537300 Msa0790680:three_prime_UTR
ACAAAATGAGGAAACCAAAA+AGG 0.369276 5_3:-1539720 Msa0790680:CDS
TCCGCTTGCCTACTTGGATT+AGG 0.370084 5_3:+1539263 None:intergenic
TACTATTTGTGATTGGATAT+AGG 0.375920 5_3:-1537239 Msa0790680:three_prime_UTR
TGTTCGTACATCGTGTCTCT+CGG 0.378527 5_3:-1537824 Msa0790680:CDS
GAGACATTTCAACGCGAGTT+TGG 0.383180 5_3:+1542415 None:intergenic
ACCTCTGCAGCCAACATAAC+AGG 0.385430 5_3:+1540427 None:intergenic
TGGCACGTTCAAACCATTCA+TGG 0.385839 5_3:+1539187 None:intergenic
TCTGTCTTACTATTTGTGAT+TGG 0.386099 5_3:-1537246 Msa0790680:three_prime_UTR
TCTTGTGTTGTTGAAATACT+TGG 0.390441 5_3:-1537674 Msa0790680:CDS
GCAGATACATGGCTCATATC+TGG 0.392572 5_3:-1539027 Msa0790680:CDS
TAGCTTTCCGTTGGTACTCT+TGG 0.398942 5_3:+1537885 None:intergenic
GTACGAACAAAATTCAGAAT+TGG 0.402152 5_3:+1537838 None:intergenic
CTGAACTTCATGAGCGTCAA+TGG 0.402913 5_3:-1538995 Msa0790680:CDS
CTGTGGTTGAAGGACCTTGT+TGG 0.404357 5_3:+1539870 None:intergenic
TATTCAAACCACGATCAGTA+TGG 0.404935 5_3:-1539542 Msa0790680:CDS
TTTGGCTTTATCAATTGTAC+TGG 0.407230 5_3:+1540805 None:intergenic
CAGGAACTATATCTTGAATC+TGG 0.418920 5_3:+1540446 None:intergenic
GGTATCTGTTGTTGAAACTA+AGG 0.420516 5_3:-1537705 Msa0790680:CDS
ACTCAAGAAATTAGTTGATA+AGG 0.422625 5_3:-1540903 Msa0790680:CDS
GGAACTTCCGAAACTCCTAA+TGG 0.424040 5_3:+1539208 None:intergenic
TCAAAATTGAGCTACATAGA+AGG 0.424580 5_3:-1542394 Msa0790680:five_prime_UTR
CTGGAATTCTCATTCGCTAC+AGG 0.425052 5_3:+1539605 None:intergenic
AAGCTTCAGTCACTTCCATT+AGG 0.425975 5_3:-1539223 Msa0790680:CDS
TCCTGTTATGTTGGCTGCAG+AGG 0.427320 5_3:-1540428 Msa0790680:intron
GTGGTTAGTGCCATGTGATT+TGG 0.428473 5_3:-1536971 Msa0790680:three_prime_UTR
ACCAAGTCGATGAAAGTAGA+AGG 0.433766 5_3:+1542738 None:intergenic
CTGGGCTCTCCTTATTATAA+GGG 0.436130 5_3:-1537309 Msa0790680:three_prime_UTR
TAGGCGTGTCACCTTTGTCC+TGG 0.437720 5_3:-1539936 Msa0790680:CDS
CCCTTCTTATTTGCAGCAAA+CGG 0.441031 5_3:-1541252 Msa0790680:intron
GCACGTCCTCGGTCCTCATC+AGG 0.442215 5_3:-1540851 Msa0790680:CDS
TCCTTCTACTTTCATCGACT+TGG 0.445145 5_3:-1542739 Msa0790680:five_prime_UTR
CAACTATCAGTTCCCATTCA+AGG 0.445198 5_3:+1541224 None:intergenic
AATTCCTTTAAAGCAACGTT+AGG 0.445693 5_3:+1539323 None:intergenic
TTGTGAGTTGGTTATGGAGG+AGG 0.447420 5_3:-1537579 Msa0790680:CDS
TGATTCTAGTGTACTTTACC+TGG 0.447489 5_3:-1540762 Msa0790680:intron
GAATCGTTATCTGTGGTTGA+AGG 0.448926 5_3:+1539860 None:intergenic
AATTAGTTGATAAGGTGTTA+AGG 0.454721 5_3:-1540895 Msa0790680:CDS
TACTGATCGTGGTTTGAATA+CGG 0.455932 5_3:+1539545 None:intergenic
CTCATCAGGAATACCTGCTC+TGG 0.456029 5_3:-1540837 Msa0790680:CDS
CTCCTCGAGACTGAAGCAAT+TGG 0.457279 5_3:-1538016 Msa0790680:CDS
ACTTTATCAAAACTGTGAAA+TGG 0.457551 5_3:+1542371 None:intergenic
CTCTATTACGATGCTTGTTG+CGG 0.461170 5_3:+1539778 None:intergenic
GTTCGTACATCGTGTCTCTC+GGG 0.461191 5_3:-1537823 Msa0790680:CDS
GAGAAACATACGAGCGGATG+TGG 0.466633 5_3:-1539421 Msa0790680:CDS
ATAGTTGTAGAAATAGCCTT+AGG 0.469360 5_3:-1536936 Msa0790680:three_prime_UTR
TTGAACAAGCTATCACGGTT+CGG 0.472915 5_3:-1537371 Msa0790680:CDS
AAGGATCTTTCCGCAGATAG+AGG 0.475682 5_3:-1540876 Msa0790680:CDS
GCAAACGGTACTCCCTTGAA+TGG 0.483761 5_3:-1541237 Msa0790680:exon
CATCTTGATTCTTGAGAGAA+GGG 0.485785 5_3:+1537002 None:intergenic
AGCGGATGTGGATACAGAAA+TGG 0.486743 5_3:-1539409 Msa0790680:CDS
GATTCTGCTGAAGAAGAGGC+TGG 0.489454 5_3:-1539914 Msa0790680:CDS
CCTCTTCTTCAGCAGAATCC+AGG 0.490625 5_3:+1539918 None:intergenic
ACTGGGTCAATGAAATTATC+CGG 0.490721 5_3:+1538897 None:intergenic
TCTTTCATAAGTTGTCTGCT+GGG 0.492761 5_3:-1537158 Msa0790680:three_prime_UTR
TGTAGAAATAGCCTTAGGTT+AGG 0.493202 5_3:-1536931 Msa0790680:three_prime_UTR
AGTTTCGGAAGTTCCATGAA+TGG 0.498066 5_3:-1539200 Msa0790680:CDS
CTTCAATTATTAAGATTCCT+CGG 0.499067 5_3:-1542483 Msa0790680:five_prime_UTR
CATGTTTGCATCCACCAATC+CGG 0.499817 5_3:+1537281 None:intergenic
TCTCCTGAAGCAATGACAAC+AGG 0.500963 5_3:+1539440 None:intergenic
ACCGTTTGCTGCAAATAAGA+AGG 0.502207 5_3:+1541251 None:intergenic
CAATCTCGTTCGCAGATACA+TGG 0.507317 5_3:-1539038 Msa0790680:CDS
GCATCTTGATTCTTGAGAGA+AGG 0.507503 5_3:+1537001 None:intergenic
TGTGAGTTGGTTATGGAGGA+GGG 0.511162 5_3:-1537578 Msa0790680:CDS
TAAAATAGAAGTCAGTGCAT+TGG 0.511298 5_3:+1537928 None:intergenic
AGCCAAGCAAGGGTTAGAAA+AGG 0.512635 5_3:-1537050 Msa0790680:three_prime_UTR
AGATATAGTTCCTGTTATGT+TGG 0.513839 5_3:-1540437 Msa0790680:CDS
ACATCAACCTTAAAGATATC+GGG 0.515169 5_3:+1539468 None:intergenic
TAAGGGACATTCCGGATTGG+TGG 0.517348 5_3:-1537292 Msa0790680:three_prime_UTR
AACCTTTGTGATACTAAAGA+TGG 0.518515 5_3:-1537731 Msa0790680:CDS
GTCCAGCACAGACGAAGAAA+AGG 0.519383 5_3:-1537651 Msa0790680:CDS
TGACACAGAGTTAAAAGCTT+CGG 0.520624 5_3:+1538920 None:intergenic
TGTGCTATCGTTTCCCACAT+TGG 0.520844 5_3:+1537529 None:intergenic
TTATTCTAATAGCTTTCCGT+TGG 0.521822 5_3:+1537876 None:intergenic
AAGCGGAAGACATTCGCTCA+TGG 0.523309 5_3:-1539247 Msa0790680:CDS
CTTGTGTTGTTGAAATACTT+GGG 0.526118 5_3:-1537673 Msa0790680:CDS
TGAACTTCATGAGCGTCAAT+GGG 0.527489 5_3:-1538994 Msa0790680:CDS
AACTATCAGTTCCCATTCAA+GGG 0.530458 5_3:+1541225 None:intergenic
TTCAGATTCCTCACTTGTGA+AGG 0.530676 5_3:-1539117 Msa0790680:CDS
AAAGTGCAAACTGAGTTTCA+AGG 0.532641 5_3:+1542644 None:intergenic
TGTTCGCTTTATCGGACCAA+TGG 0.532924 5_3:+1537960 None:intergenic
TGCTGAAGAAGAGGCTGGGA+GGG 0.534243 5_3:-1539909 Msa0790680:CDS
TGGAAGAATTGTCGAACCAT+TGG 0.534883 5_3:-1537976 Msa0790680:CDS
GCATATACAGTCTCTTGAAA+GGG 0.537563 5_3:+1537763 None:intergenic
CTCCAATTGCTTCAGTCTCG+AGG 0.539976 5_3:+1538014 None:intergenic
CAAGGGTTAGAAAAGGTAGT+TGG 0.544282 5_3:-1537043 Msa0790680:three_prime_UTR
GTATCTGTTGTTGAAACTAA+GGG 0.545498 5_3:-1537704 Msa0790680:CDS
AATTCTCTCAAAATGCCAAA+AGG 0.546324 5_3:-1540497 Msa0790680:CDS
ACTCTTGGTTACCAGAATCA+AGG 0.547034 5_3:+1537900 None:intergenic
AGCGGAAGACATTCGCTCAT+GGG 0.547386 5_3:-1539246 Msa0790680:CDS
AACCACAGATAACGATTCAA+AGG 0.549468 5_3:-1539855 Msa0790680:CDS
TTCCTTTGAATCGTTATCTG+TGG 0.550817 5_3:+1539853 None:intergenic
TGCATATACAGTCTCTTGAA+AGG 0.552297 5_3:+1537762 None:intergenic
CAAACGGTACTCCCTTGAAT+GGG 0.552762 5_3:-1541236 Msa0790680:exon
TTATAAGGGACATTCCGGAT+TGG 0.555465 5_3:-1537295 Msa0790680:three_prime_UTR
CTGGTTAGCAAAACCAGAGC+AGG 0.555767 5_3:+1540824 None:intergenic
TAGCACAAAGGTGTATGCAT+TGG 0.559035 5_3:-1537513 Msa0790680:CDS
CCTGGATTCTGCTGAAGAAG+AGG 0.559404 5_3:-1539918 Msa0790680:CDS
ACGCGTGGAATATTGTGAGT+TGG 0.563486 5_3:-1537591 Msa0790680:CDS
TGACATACCAAAGCCAAGCA+AGG 0.564831 5_3:-1537061 Msa0790680:three_prime_UTR
ATCGGGCACGCATATTCCTC+CGG 0.564872 5_3:+1539485 None:intergenic
GACATACCAAAGCCAAGCAA+GGG 0.565638 5_3:-1537060 Msa0790680:three_prime_UTR
TTGCCTACTTGGATTAGGAA+TGG 0.568827 5_3:+1539268 None:intergenic
GGGAACTGATAGTTGTAAAG+TGG 0.569339 5_3:-1541216 Msa0790680:CDS
CGAAGAAAAGGAATTTGCAC+TGG 0.569867 5_3:-1537639 Msa0790680:CDS
TTGGAGATATTGACAAGATA+CGG 0.570098 5_3:+1537548 None:intergenic
AGATAGAGGAAGCACGTCCT+CGG 0.570643 5_3:-1540862 Msa0790680:CDS
TTGTGATACTAAAGATGGTA+GGG 0.570925 5_3:-1537726 Msa0790680:CDS
TCAGCTCAGTGCCTAACCTA+AGG 0.571263 5_3:+1536920 None:intergenic
TTTGTGATACTAAAGATGGT+AGG 0.572011 5_3:-1537727 Msa0790680:CDS
GGTGCGTAAAGAATCATGAC+TGG 0.572498 5_3:+1539586 None:intergenic
GATACGTTACTAAGATCCAT+TGG 0.575411 5_3:+1539167 None:intergenic
AAACTGAGTTTCAAGGAAAG+TGG 0.576758 5_3:+1542651 None:intergenic
CTTGTCAATATCTCCAATGT+GGG 0.579898 5_3:-1537542 Msa0790680:CDS
GAATGGTTTGAACGTGCCAA+TGG 0.581417 5_3:-1539183 Msa0790680:CDS
TAGTAACGTATCATTTGGAT+CGG 0.581449 5_3:-1539156 Msa0790680:CDS
ATCTTGATTCTTGAGAGAAG+GGG 0.582080 5_3:+1537003 None:intergenic
TGCTCAGAAATCTCATAACT+GGG 0.582807 5_3:+1538880 None:intergenic
TTAAGGGATGTCGAGAGCGA+AGG 0.583689 5_3:-1537476 Msa0790680:CDS
TTTACTTACAGGCAATAACA+GGG 0.587895 5_3:-1540525 Msa0790680:intron
ATATTGTGAGTTGGTTATGG+AGG 0.594868 5_3:-1537582 Msa0790680:CDS
ATACAGAAATGGTTTGATGA+GGG 0.600102 5_3:-1539398 Msa0790680:CDS
ATTAAACACGGGAGAACAAG+AGG 0.601974 5_3:-1539651 Msa0790680:CDS
CACGAATTCCATACTGATCG+TGG 0.602310 5_3:+1539534 None:intergenic
TGGAATTTACAAAGTACTGC+AGG 0.602335 5_3:-1538803 Msa0790680:intron
AGGTGGATGTCAATTACTGT+TGG 0.604162 5_3:-1538823 Msa0790680:CDS
CAAGAATCAAGATGCTAGAG+AGG 0.604267 5_3:-1536993 Msa0790680:three_prime_UTR
CGGCTCAGAATTCACACTAT+CGG 0.607772 5_3:+1539565 None:intergenic
ATTCTGCTGAAGAAGAGGCT+GGG 0.610698 5_3:-1539913 Msa0790680:CDS
TACCATCTTTAGTATCACAA+AGG 0.613316 5_3:+1537729 None:intergenic
TAAAGGAATTAATATCAAAG+TGG 0.616973 5_3:-1539310 Msa0790680:CDS
TCCTAATCCAAGTAGGCAAG+CGG 0.617241 5_3:-1539264 Msa0790680:CDS
TCTTGTCAATATCTCCAATG+TGG 0.617512 5_3:-1537543 Msa0790680:CDS
CTGCTGAAGAAGAGGCTGGG+AGG 0.617545 5_3:-1539910 Msa0790680:CDS
TATGGAAACTTATTAAACAC+GGG 0.622844 5_3:-1539662 Msa0790680:CDS
TCTCCATTCCTAATCCAAGT+AGG 0.622989 5_3:-1539271 Msa0790680:CDS
TGAAGATACATGCAGTGTGT+TGG 0.623235 5_3:-1538044 Msa0790680:CDS
AGTTTGGTGAAGATTAAGCA+TGG 0.626758 5_3:+1542431 None:intergenic
CAGAGCAGGTATTCCTGATG+AGG 0.628667 5_3:+1540838 None:intergenic
ATGAGAGAATTGCTCCAACA+AGG 0.628878 5_3:-1539884 Msa0790680:CDS
AAGACTAGAAACAGTTCTCG+CGG 0.629393 5_3:-1539065 Msa0790680:CDS
TCTCGACATCCCTTAAAAGT+CGG 0.631819 5_3:+1537483 None:intergenic
GATTAGAGTCGCACCTCCGG+AGG 0.634468 5_3:-1539501 Msa0790680:CDS
CTGGTAACCAAGAGTACCAA+CGG 0.635015 5_3:-1537892 Msa0790680:CDS
GATACAGAAATGGTTTGATG+AGG 0.635279 5_3:-1539399 Msa0790680:CDS
GACACAAAAGCTCTGCGAGG+TGG 0.636294 5_3:-1538840 Msa0790680:CDS
TCACTTGTGAAGGCTAGTCG+TGG 0.641208 5_3:-1539107 Msa0790680:CDS
AGACTAGAAACAGTTCTCGC+GGG 0.641287 5_3:-1539064 Msa0790680:CDS
TTAGGAGTCATCGACAAATG+CGG 0.642811 5_3:+1539341 None:intergenic
GAATCAAGATGCTAGAGAGG+TGG 0.646817 5_3:-1536990 Msa0790680:three_prime_UTR
TTCAGCAGAATCCAGGACAA+AGG 0.647230 5_3:+1539925 None:intergenic
AAAATCTCTTCAGTTTGCAG+CGG 0.649941 5_3:-1539819 Msa0790680:CDS
GTATGGAAACTTATTAAACA+CGG 0.655583 5_3:-1539663 Msa0790680:CDS
ACGACTAGCCTTCACAAGTG+AGG 0.663252 5_3:+1539109 None:intergenic
AAGAAAACGAAACAGTTCCG+AGG 0.668030 5_3:+1542466 None:intergenic
TCTATGATCACCAAATCACA+TGG 0.686101 5_3:+1536961 None:intergenic
TTACTTACAGGCAATAACAG+GGG 0.690645 5_3:-1540524 Msa0790680:intron
GGACGTGCTTCCTCTATCTG+CGG 0.693666 5_3:+1540866 None:intergenic
ACGCTCATGAAGTTCAGACA+AGG 0.697966 5_3:+1539001 None:intergenic
TGTGGGAAACGATAGCACAA+AGG 0.699806 5_3:-1537525 Msa0790680:CDS
AAAGTAGTAGTAAGTGCACG+AGG 0.699927 5_3:+1542507 None:intergenic
GGGCACGCATATTCCTCCGG+AGG 0.703584 5_3:+1539488 None:intergenic
CTTCAGGAGAAACATACGAG+CGG 0.727378 5_3:-1539427 Msa0790680:CDS
GGTATTCCTGATGAGGACCG+AGG 0.730980 5_3:+1540845 None:intergenic
AAACACGGGAGAACAAGAGG+AGG 0.731559 5_3:-1539648 Msa0790680:CDS
CATGACACAAAAGCTCTGCG+AGG 0.757823 5_3:-1538843 Msa0790680:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAGTTGAAAAAAAAT+AGG + chr5_3:1536920-1536939 None:intergenic 10.0%
!!! TTTTTTGTGTAAATTTAAAA+TGG - chr5_3:1537654-1537673 Msa0790680:CDS 10.0%
!!! GATTAATATATATATTTTGA+AGG - chr5_3:1542748-1542767 Msa0790680:five_prime_UTR 10.0%
!!! AAATTTTTCCTTCTTTTTAT+AGG - chr5_3:1537762-1537781 Msa0790680:CDS 15.0%
!!! AATTTTTCCTTCTTTTTATA+GGG - chr5_3:1537763-1537782 Msa0790680:CDS 15.0%
!!! TAATGTATAATTTTACTTAC+AGG - chr5_3:1539074-1539093 Msa0790680:CDS 15.0%
!!! GGATATCTTTTTAAAAAAAA+CGG - chr5_3:1539283-1539302 Msa0790680:CDS 15.0%
!!! GATATCTTTTTAAAAAAAAC+GGG - chr5_3:1539284-1539303 Msa0790680:CDS 15.0%
!!! ATATCTTTTTAAAAAAAACG+GGG - chr5_3:1539285-1539304 Msa0790680:CDS 15.0%
!! AGTCATATATACAATAATAA+TGG + chr5_3:1542721-1542740 None:intergenic 15.0%
!! GTATGTTGTAAAATTTCAAA+CGG + chr5_3:1537682-1537701 None:intergenic 20.0%
!! AAAGAAGGAAAAATTTACAT+GGG + chr5_3:1537758-1537777 None:intergenic 20.0%
!! AAAAGAAGGAAAAATTTACA+TGG + chr5_3:1537759-1537778 None:intergenic 20.0%
!! AAAGAAAATGAGTATTAAGA+TGG + chr5_3:1537860-1537879 None:intergenic 20.0%
!!! ATTTTCTTTTTGAATTAGTG+TGG - chr5_3:1537871-1537890 Msa0790680:CDS 20.0%
!!! TTTTATGTACCTTAAAAAAG+CGG + chr5_3:1538439-1538458 None:intergenic 20.0%
!! ATATAAACTTTACAAAGAGT+TGG - chr5_3:1539008-1539027 Msa0790680:CDS 20.0%
!! GATTGTTCATAAAATAAGTA+TGG + chr5_3:1539223-1539242 None:intergenic 20.0%
!! TGTTACAATATATATCCATT+TGG - chr5_3:1539533-1539552 Msa0790680:CDS 20.0%
!! TAAAGGAATTAATATCAAAG+TGG - chr5_3:1540300-1540319 Msa0790680:intron 20.0%
!! TTAGTTAAAAAGTGAGTTTA+AGG - chr5_3:1540953-1540972 Msa0790680:intron 20.0%
!!! TAAGTATTTTGAAATTGGAA+AGG + chr5_3:1541459-1541478 None:intergenic 20.0%
!! AAAAAACAAGAGATAAAACT+GGG - chr5_3:1542283-1542302 Msa0790680:five_prime_UTR 20.0%
!!! TTTTGCCTTTTACTTTTCAT+GGG - chr5_3:1537052-1537071 Msa0790680:three_prime_UTR 25.0%
! CTTCAATTATTAAGATTCCT+CGG - chr5_3:1537127-1537146 Msa0790680:three_prime_UTR 25.0%
! ACTTTATCAAAACTGTGAAA+TGG + chr5_3:1537242-1537261 None:intergenic 25.0%
!!! GTTTTGATAAAGTCTTCATT+TGG - chr5_3:1537249-1537268 Msa0790680:three_prime_UTR 25.0%
!! ATATACAATTGTTGCTTCTA+TGG + chr5_3:1537291-1537310 None:intergenic 25.0%
!! AGTGAATTATTTCCATCTTT+TGG - chr5_3:1537431-1537450 Msa0790680:CDS 25.0%
!! CTCTTTTTAAATTTCTCCTA+TGG - chr5_3:1537478-1537497 Msa0790680:CDS 25.0%
! ACAAATGAAAGTAAGCTTAA+GGG + chr5_3:1538165-1538184 None:intergenic 25.0%
! AACAAATGAAAGTAAGCTTA+AGG + chr5_3:1538166-1538185 None:intergenic 25.0%
! CAAAATGCAAATTGAACTTT+GGG + chr5_3:1538273-1538292 None:intergenic 25.0%
! ATCAAGCTCATGTTAATTAA+TGG + chr5_3:1538299-1538318 None:intergenic 25.0%
! TTTATGTACCTTAAAAAAGC+GGG + chr5_3:1538438-1538457 None:intergenic 25.0%
! TGAACTCAACTATATTGTAA+TGG - chr5_3:1538463-1538482 Msa0790680:intron 25.0%
! GAACTCAACTATATTGTAAT+GGG - chr5_3:1538464-1538483 Msa0790680:intron 25.0%
!!! TTATTGGACTGTTTACTTTT+TGG - chr5_3:1538527-1538546 Msa0790680:intron 25.0%
!!! TATTGGACTGTTTACTTTTT+GGG - chr5_3:1538528-1538547 Msa0790680:intron 25.0%
!!! AGTCATCTGATTTTTTTTCT+AGG + chr5_3:1538565-1538584 None:intergenic 25.0%
! TCGATTGTAATTCATGTTAA+AGG - chr5_3:1538662-1538681 Msa0790680:intron 25.0%
!! ACTCAAGAAATTAGTTGATA+AGG - chr5_3:1538707-1538726 Msa0790680:intron 25.0%
!!! AATTAGTTGATAAGGTGTTA+AGG - chr5_3:1538715-1538734 Msa0790680:intron 25.0%
!! GTTCTTTTTATTATTTCAGC+TGG - chr5_3:1538877-1538896 Msa0790680:CDS 25.0%
! ATATCTTATCAACTCAGAAA+TGG - chr5_3:1538913-1538932 Msa0790680:CDS 25.0%
! TATCTTATCAACTCAGAAAT+GGG - chr5_3:1538914-1538933 Msa0790680:CDS 25.0%
!!! TGTTGTTGTTTATATCCATT+TGG - chr5_3:1539583-1539602 Msa0790680:CDS 25.0%
! AAGAAGTTACTACAAAAACT+TGG - chr5_3:1539867-1539886 Msa0790680:CDS 25.0%
!!! ATTTTTCAAGATCACCTTTT+TGG + chr5_3:1539907-1539926 None:intergenic 25.0%
! TTGTATCTTCTGATAAAGTA+TGG - chr5_3:1539930-1539949 Msa0790680:CDS 25.0%
! GTATGGAAACTTATTAAACA+CGG - chr5_3:1539947-1539966 Msa0790680:CDS 25.0%
! TATGGAAACTTATTAAACAC+GGG - chr5_3:1539948-1539967 Msa0790680:CDS 25.0%
! TACATCAACCTTAAAGATAT+CGG + chr5_3:1540146-1540165 None:intergenic 25.0%
!!! GCAATTTCTTTTTAGTTTTC+GGG + chr5_3:1540250-1540269 None:intergenic 25.0%
!!! GGCAATTTCTTTTTAGTTTT+CGG + chr5_3:1540251-1540270 None:intergenic 25.0%
!! TTTTCATATCTTTGACTACT+TGG + chr5_3:1540652-1540671 None:intergenic 25.0%
! TGATACATTGTTAGGTAATT+TGG - chr5_3:1540862-1540881 Msa0790680:CDS 25.0%
! TATTATATGAAGCGTATGTT+TGG - chr5_3:1540892-1540911 Msa0790680:CDS 25.0%
!! ATTGATTCTAACTTAAAGCT+AGG + chr5_3:1541070-1541089 None:intergenic 25.0%
!!! TGAAGACTTAAAACTGATTT+TGG + chr5_3:1541135-1541154 None:intergenic 25.0%
!!! TTAGTGCATGTTTTGATTTT+GGG + chr5_3:1541175-1541194 None:intergenic 25.0%
! CTTTCAAAACAATATTCCAT+GGG - chr5_3:1541359-1541378 Msa0790680:intron 25.0%
!! CAAGTTTTCCTTTTTATTCT+AGG + chr5_3:1541385-1541404 None:intergenic 25.0%
!!! ATTTTAAAGATCCTTGATTC+TGG - chr5_3:1541699-1541718 Msa0790680:intron 25.0%
!! CGAAAAATGGTAGTAATTTT+GGG + chr5_3:1541818-1541837 None:intergenic 25.0%
!! TCGAAAAATGGTAGTAATTT+TGG + chr5_3:1541819-1541838 None:intergenic 25.0%
! CAAAAAACAAGAGATAAAAC+TGG - chr5_3:1542282-1542301 Msa0790680:five_prime_UTR 25.0%
! TACTATTTGTGATTGGATAT+AGG - chr5_3:1542371-1542390 Msa0790680:five_prime_UTR 25.0%
!! TACGTTTGATTTTGCTATCA+TGG - chr5_3:1537000-1537019 Msa0790680:three_prime_UTR 30.0%
!! ACGTTTGATTTTGCTATCAT+GGG - chr5_3:1537001-1537020 Msa0790680:three_prime_UTR 30.0%
AGGCAAAAGTTGAATCTTTA+TGG + chr5_3:1537040-1537059 None:intergenic 30.0%
!! CTTTTGCCTTTTACTTTTCA+TGG - chr5_3:1537051-1537070 Msa0790680:three_prime_UTR 30.0%
ACTAACCCATGAAAAGTAAA+AGG + chr5_3:1537060-1537079 None:intergenic 30.0%
ACGAGGTCATTATTGAATTT+AGG + chr5_3:1537089-1537108 None:intergenic 30.0%
TCAAAATTGAGCTACATAGA+AGG - chr5_3:1537216-1537235 Msa0790680:three_prime_UTR 30.0%
ATCATCATCATCATCATCAT+AGG - chr5_3:1537315-1537334 Msa0790680:exon 30.0%
AAATGATCAGTTCCAAAAGA+TGG + chr5_3:1537446-1537465 None:intergenic 30.0%
CGAAAAAAAAGACTAACCAT+AGG + chr5_3:1537497-1537516 None:intergenic 30.0%
! ATGCTATAGTTCTACTCTAT+TGG - chr5_3:1537723-1537742 Msa0790680:CDS 30.0%
TAACATGCCCTATAAAAAGA+AGG + chr5_3:1537773-1537792 None:intergenic 30.0%
! TAGTTTGTGGCTAATTTGAT+AGG - chr5_3:1537791-1537810 Msa0790680:CDS 30.0%
AGTTTGTGGCTAATTTGATA+GGG - chr5_3:1537792-1537811 Msa0790680:CDS 30.0%
GAAAATGAGTATTAAGATGG+AGG + chr5_3:1537857-1537876 None:intergenic 30.0%
ATAGGATCATTAACACTATG+TGG + chr5_3:1537907-1537926 None:intergenic 30.0%
CATATGCACAAAATGATCAA+TGG + chr5_3:1537940-1537959 None:intergenic 30.0%
AATTTCTCACATAGATCAAG+TGG + chr5_3:1537963-1537982 None:intergenic 30.0%
TGATCTATGTGAGAAATTGT+AGG - chr5_3:1537965-1537984 Msa0790680:CDS 30.0%
GATCTATGTGAGAAATTGTA+GGG - chr5_3:1537966-1537985 Msa0790680:CDS 30.0%
CATATGCAGAAGATGATTAA+CGG + chr5_3:1538190-1538209 None:intergenic 30.0%
CCAAAATGCAAATTGAACTT+TGG + chr5_3:1538274-1538293 None:intergenic 30.0%
! CCAAAGTTCAATTTGCATTT+TGG - chr5_3:1538271-1538290 Msa0790680:intron 30.0%
TTATGTACCTTAAAAAAGCG+GGG + chr5_3:1538437-1538456 None:intergenic 30.0%
!!! ATTGGACTGTTTACTTTTTG+GGG - chr5_3:1538529-1538548 Msa0790680:intron 30.0%
CATGAATTACAATCGATGAA+AGG + chr5_3:1538658-1538677 None:intergenic 30.0%
!! TTTGGCTTTATCAATTGTAC+TGG + chr5_3:1538808-1538827 None:intergenic 30.0%
AATAAAAAGAACTACGAACC+AGG + chr5_3:1538869-1538888 None:intergenic 30.0%
CTTTCATGAAAAATGAATGG+TGG + chr5_3:1538941-1538960 None:intergenic 30.0%
GAGCTTTCATGAAAAATGAA+TGG + chr5_3:1538944-1538963 None:intergenic 30.0%
!!! TGAAAGCTCCTGATTTTTTT+AGG - chr5_3:1538955-1538974 Msa0790680:CDS 30.0%
!!! GAAAGCTCCTGATTTTTTTA+GGG - chr5_3:1538956-1538975 Msa0790680:CDS 30.0%
TCAGATACCCTAAAAAAATC+AGG + chr5_3:1538966-1538985 None:intergenic 30.0%
! TTTTACTTACAGGCAATAAC+AGG - chr5_3:1539084-1539103 Msa0790680:CDS 30.0%
TTTACTTACAGGCAATAACA+GGG - chr5_3:1539085-1539104 Msa0790680:CDS 30.0%
AATTCTCTCAAAATGCCAAA+AGG - chr5_3:1539113-1539132 Msa0790680:CDS 30.0%
AGATATAGTTCCTGTTATGT+TGG - chr5_3:1539173-1539192 Msa0790680:CDS 30.0%
ATAGACTCTTCTGCATTAAA+TGG + chr5_3:1539245-1539264 None:intergenic 30.0%
!! TTTTTAAAAAAAACGGGGCA+AGG - chr5_3:1539290-1539309 Msa0790680:CDS 30.0%
!! TTTTAAAAAAAACGGGGCAA+GGG - chr5_3:1539291-1539310 Msa0790680:CDS 30.0%
TCATCTTTCAATGTCTTTGA+GGG - chr5_3:1539346-1539365 Msa0790680:CDS 30.0%
TTCAAATTACTGAGTCAATG+AGG + chr5_3:1539428-1539447 None:intergenic 30.0%
CATTAAAATGAAGCTCCAAA+TGG + chr5_3:1539601-1539620 None:intergenic 30.0%
ACAAAAACTTGGACAAAATG+AGG - chr5_3:1539878-1539897 Msa0790680:CDS 30.0%
ACAAAATGAGGAAACCAAAA+AGG - chr5_3:1539890-1539909 Msa0790680:CDS 30.0%
ACATCAACCTTAAAGATATC+GGG + chr5_3:1540145-1540164 None:intergenic 30.0%
ATACAGAAATGGTTTGATGA+GGG - chr5_3:1540212-1540231 Msa0790680:intron 30.0%
!! AATTCCTTTAAAGCAACGTT+AGG + chr5_3:1540290-1540309 None:intergenic 30.0%
GATCTTAGTAACGTATCATT+TGG - chr5_3:1540449-1540468 Msa0790680:CDS 30.0%
TAGTAACGTATCATTTGGAT+CGG - chr5_3:1540454-1540473 Msa0790680:CDS 30.0%
!!! TTTATTTTGCCTTCGCAATT+TGG - chr5_3:1540835-1540854 Msa0790680:CDS 30.0%
TTGGTACTTGATACATTGTT+AGG - chr5_3:1540854-1540873 Msa0790680:CDS 30.0%
TGAGTGTAAAAAATCACGTT+TGG - chr5_3:1541027-1541046 Msa0790680:intron 30.0%
AAGCAAAATCAATTCTAGTC+AGG - chr5_3:1541095-1541114 Msa0790680:intron 30.0%
!! AAACTGATTTTGGTGTGTTT+GGG + chr5_3:1541125-1541144 None:intergenic 30.0%
!! AAAACTGATTTTGGTGTGTT+TGG + chr5_3:1541126-1541145 None:intergenic 30.0%
!!! CTTAGTGCATGTTTTGATTT+TGG + chr5_3:1541176-1541195 None:intergenic 30.0%
ATCTACTTTGTCACAACTTA+TGG + chr5_3:1541328-1541347 None:intergenic 30.0%
!!! CCATGGAATATTGTTTTGAA+AGG + chr5_3:1541361-1541380 None:intergenic 30.0%
CCTTTCAAAACAATATTCCA+TGG - chr5_3:1541358-1541377 Msa0790680:intron 30.0%
!!! TTTTTTTCGCGCATTGAAAT+TGG + chr5_3:1541431-1541450 None:intergenic 30.0%
!!! GAGCGTAAGTATTTTGAAAT+TGG + chr5_3:1541464-1541483 None:intergenic 30.0%
TAAAATAGAAGTCAGTGCAT+TGG + chr5_3:1541685-1541704 None:intergenic 30.0%
TTATTCTAATAGCTTTCCGT+TGG + chr5_3:1541737-1541756 None:intergenic 30.0%
GTACGAACAAAATTCAGAAT+TGG + chr5_3:1541775-1541794 None:intergenic 30.0%
AACCTTTGTGATACTAAAGA+TGG - chr5_3:1541879-1541898 Msa0790680:intron 30.0%
TACCATCTTTAGTATCACAA+AGG + chr5_3:1541884-1541903 None:intergenic 30.0%
TTTGTGATACTAAAGATGGT+AGG - chr5_3:1541883-1541902 Msa0790680:intron 30.0%
TTGTGATACTAAAGATGGTA+GGG - chr5_3:1541884-1541903 Msa0790680:intron 30.0%
GTATCTGTTGTTGAAACTAA+GGG - chr5_3:1541906-1541925 Msa0790680:intron 30.0%
! TCTTGTGTTGTTGAAATACT+TGG - chr5_3:1541936-1541955 Msa0790680:intron 30.0%
! CTTGTGTTGTTGAAATACTT+GGG - chr5_3:1541937-1541956 Msa0790680:intron 30.0%
TTGGAGATATTGACAAGATA+CGG + chr5_3:1542065-1542084 None:intergenic 30.0%
! CTTTTCTTCATATTGATCGT+TGG + chr5_3:1542195-1542214 None:intergenic 30.0%
!! TGATAGCTTGTTCAAAAATG+TGG + chr5_3:1542234-1542253 None:intergenic 30.0%
! CATTTTTGAACAAGCTATCA+CGG - chr5_3:1542234-1542253 Msa0790680:intron 30.0%
TCTGTCTTACTATTTGTGAT+TGG - chr5_3:1542364-1542383 Msa0790680:five_prime_UTR 30.0%
!! TAATTTTGGTCAGTAACTTC+TGG - chr5_3:1542475-1542494 Msa0790680:five_prime_UTR 30.0%
ATAGTTGTAGAAATAGCCTT+AGG - chr5_3:1542674-1542693 Msa0790680:five_prime_UTR 30.0%
AAACTGAGTTTCAAGGAAAG+TGG + chr5_3:1536962-1536981 None:intergenic 35.0%
AAAGTGCAAACTGAGTTTCA+AGG + chr5_3:1536969-1536988 None:intergenic 35.0%
! AGTTTGGTGAAGATTAAGCA+TGG + chr5_3:1537182-1537201 None:intergenic 35.0%
AAACCCAAGAGCAATTAGAT+GGG + chr5_3:1537573-1537592 None:intergenic 35.0%
ATCTAATTGCTCTTGGGTTT+CGG - chr5_3:1537573-1537592 Msa0790680:CDS 35.0%
! TATAGTTCTACTCTATTGGC+TGG - chr5_3:1537727-1537746 Msa0790680:CDS 35.0%
! TTATAGGGCATGTTAGTTTG+TGG - chr5_3:1537778-1537797 Msa0790680:CDS 35.0%
GTTTGTGGCTAATTTGATAG+GGG - chr5_3:1537793-1537812 Msa0790680:CDS 35.0%
TTTGTGGCTAATTTGATAGG+GGG - chr5_3:1537794-1537813 Msa0790680:CDS 35.0%
ATCAATGGTAACACGTGAAT+AGG + chr5_3:1537925-1537944 None:intergenic 35.0%
TTACCTCATAAGAGTAGAAC+AGG + chr5_3:1538213-1538232 None:intergenic 35.0%
! GAGGTAAGCTTCATTCTTTT+TGG - chr5_3:1538226-1538245 Msa0790680:intron 35.0%
AACTATCAGTTCCCATTCAA+GGG + chr5_3:1538388-1538407 None:intergenic 35.0%
TAAATGCAACAGGGATTGAA+AGG + chr5_3:1538510-1538529 None:intergenic 35.0%
TCAATCCCTGTTGCATTTAT+TGG - chr5_3:1538511-1538530 Msa0790680:intron 35.0%
ACAGTCCAATAAATGCAACA+GGG + chr5_3:1538519-1538538 None:intergenic 35.0%
AACAGTCCAATAAATGCAAC+AGG + chr5_3:1538520-1538539 None:intergenic 35.0%
!! GTGTTATTTGTAACTTCGCT+TGG - chr5_3:1538618-1538637 Msa0790680:intron 35.0%
TTGTAACTTCGCTTGGATAT+TGG - chr5_3:1538625-1538644 Msa0790680:intron 35.0%
! GCAATTTTGCAGAAGTTGTT+TGG + chr5_3:1538826-1538845 None:intergenic 35.0%
TGATTCTAGTGTACTTTACC+TGG - chr5_3:1538848-1538867 Msa0790680:CDS 35.0%
TTACTTACAGGCAATAACAG+GGG - chr5_3:1539086-1539105 Msa0790680:CDS 35.0%
! CTAATGACTTTCTTGCCTTT+TGG + chr5_3:1539131-1539150 None:intergenic 35.0%
CAGGAACTATATCTTGAATC+TGG + chr5_3:1539167-1539186 None:intergenic 35.0%
TATTACCTTGTTCAGTGATG+TGG - chr5_3:1539262-1539281 Msa0790680:CDS 35.0%
CTCATCTTTCAATGTCTTTG+AGG - chr5_3:1539345-1539364 Msa0790680:CDS 35.0%
TAAGCTTAGTTGTAGGAGTT+TGG + chr5_3:1539403-1539422 None:intergenic 35.0%
GAATAGTTGCATGTCTCTAT+AGG - chr5_3:1539445-1539464 Msa0790680:CDS 35.0%
!! CTCGAATAGTTGATGATCTT+AGG - chr5_3:1539655-1539674 Msa0790680:CDS 35.0%
AACCACAGATAACGATTCAA+AGG - chr5_3:1539755-1539774 Msa0790680:CDS 35.0%
TTCCTTTGAATCGTTATCTG+TGG + chr5_3:1539760-1539779 None:intergenic 35.0%
AAAATCTCTTCAGTTTGCAG+CGG - chr5_3:1539791-1539810 Msa0790680:CDS 35.0%
TACTGATCGTGGTTTGAATA+CGG + chr5_3:1540068-1540087 None:intergenic 35.0%
TATTCAAACCACGATCAGTA+TGG - chr5_3:1540068-1540087 Msa0790680:intron 35.0%
GATACAGAAATGGTTTGATG+AGG - chr5_3:1540211-1540230 Msa0790680:intron 35.0%
GATACGTTACTAAGATCCAT+TGG + chr5_3:1540446-1540465 None:intergenic 35.0%
TGACACAGAGTTAAAAGCTT+CGG + chr5_3:1540693-1540712 None:intergenic 35.0%
ACTGGGTCAATGAAATTATC+CGG + chr5_3:1540716-1540735 None:intergenic 35.0%
TGCTCAGAAATCTCATAACT+GGG + chr5_3:1540733-1540752 None:intergenic 35.0%
!! TGGAATTTACAAAGTACTGC+AGG - chr5_3:1540807-1540826 Msa0790680:CDS 35.0%
TATCAAGTACCAAATTGCGA+AGG + chr5_3:1540847-1540866 None:intergenic 35.0%
AAAATCACGTTTGGTTGCAA+AGG - chr5_3:1541036-1541055 Msa0790680:intron 35.0%
!! AACTGATTTTGGTGTGTTTG+GGG + chr5_3:1541124-1541143 None:intergenic 35.0%
TTCCACTTTCGTAAAAGACA+CGG + chr5_3:1541253-1541272 None:intergenic 35.0%
TACGAAAGTGGAATTTGTAG+AGG - chr5_3:1541260-1541279 Msa0790680:intron 35.0%
!! TGTGCATCTGCTTTTGATAT+TGG - chr5_3:1541488-1541507 Msa0790680:intron 35.0%
!! GTGCATCTGCTTTTGATATT+GGG - chr5_3:1541489-1541508 Msa0790680:intron 35.0%
!! CTGCTTTTGATATTGGGTTT+TGG - chr5_3:1541495-1541514 Msa0790680:intron 35.0%
TTGTGTTCTTCATGCAGAAA+TGG - chr5_3:1541528-1541547 Msa0790680:intron 35.0%
GGTATCTGTTGTTGAAACTA+AGG - chr5_3:1541905-1541924 Msa0790680:intron 35.0%
!! GGAATATTGTGAGTTGGTTA+TGG - chr5_3:1542025-1542044 Msa0790680:intron 35.0%
!! ATATTGTGAGTTGGTTATGG+AGG - chr5_3:1542028-1542047 Msa0790680:intron 35.0%
TCTTGTCAATATCTCCAATG+TGG - chr5_3:1542067-1542086 Msa0790680:intron 35.0%
CTTGTCAATATCTCCAATGT+GGG - chr5_3:1542068-1542087 Msa0790680:intron 35.0%
CCTTATTATAAGGGACATTC+CGG - chr5_3:1542310-1542329 Msa0790680:five_prime_UTR 35.0%
TTCTTTCATAAGTTGTCTGC+TGG - chr5_3:1542451-1542470 Msa0790680:five_prime_UTR 35.0%
TCTTTCATAAGTTGTCTGCT+GGG - chr5_3:1542452-1542471 Msa0790680:five_prime_UTR 35.0%
ATCTTGATTCTTGAGAGAAG+GGG + chr5_3:1542610-1542629 None:intergenic 35.0%
CATCTTGATTCTTGAGAGAA+GGG + chr5_3:1542611-1542630 None:intergenic 35.0%
TCTATGATCACCAAATCACA+TGG + chr5_3:1542652-1542671 None:intergenic 35.0%
! TGTAGAAATAGCCTTAGGTT+AGG - chr5_3:1542679-1542698 Msa0790680:five_prime_UTR 35.0%
! TCCTTCTACTTTCATCGACT+TGG - chr5_3:1536871-1536890 Msa0790680:three_prime_UTR 40.0%
ACCAAGTCGATGAAAGTAGA+AGG + chr5_3:1536875-1536894 None:intergenic 40.0%
AAAGTAGTAGTAAGTGCACG+AGG + chr5_3:1537106-1537125 None:intergenic 40.0%
AAGAAAACGAAACAGTTCCG+AGG + chr5_3:1537147-1537166 None:intergenic 40.0%
TGGTTCAAATCCAGCATACT+TGG + chr5_3:1537526-1537545 None:intergenic 40.0%
AAGTATGCTGGATTTGAACC+AGG - chr5_3:1537525-1537544 Msa0790680:CDS 40.0%
GCAATTAGATGGGATGGTAA+GGG + chr5_3:1537563-1537582 None:intergenic 40.0%
AGCAATTAGATGGGATGGTA+AGG + chr5_3:1537564-1537583 None:intergenic 40.0%
CATCCCATCTAATTGCTCTT+GGG - chr5_3:1537567-1537586 Msa0790680:CDS 40.0%
GAAACCCAAGAGCAATTAGA+TGG + chr5_3:1537574-1537593 None:intergenic 40.0%
TAGCAGCAAGGATTAAACCA+TGG - chr5_3:1537830-1537849 Msa0790680:CDS 40.0%
AGTATTAAGATGGAGGTCCA+TGG + chr5_3:1537850-1537869 None:intergenic 40.0%
! TCTGTTTGCGATGGGAATTT+TGG - chr5_3:1537989-1538008 Msa0790680:CDS 40.0%
! TTTGCGATGGGAATTTTGGA+GGG - chr5_3:1537993-1538012 Msa0790680:CDS 40.0%
GTAAGCTTAAGGGTCTGTTT+GGG + chr5_3:1538155-1538174 None:intergenic 40.0%
AGTAAGCTTAAGGGTCTGTT+TGG + chr5_3:1538156-1538175 None:intergenic 40.0%
ATGCCTGTTCTACTCTTATG+AGG - chr5_3:1538207-1538226 Msa0790680:intron 40.0%
! CGTTTGCTGCAAATAAGAAG+GGG + chr5_3:1538360-1538379 None:intergenic 40.0%
! CCGTTTGCTGCAAATAAGAA+GGG + chr5_3:1538361-1538380 None:intergenic 40.0%
! CCCTTCTTATTTGCAGCAAA+CGG - chr5_3:1538358-1538377 Msa0790680:intron 40.0%
! ACCGTTTGCTGCAAATAAGA+AGG + chr5_3:1538362-1538381 None:intergenic 40.0%
CAACTATCAGTTCCCATTCA+AGG + chr5_3:1538389-1538408 None:intergenic 40.0%
GGGAACTGATAGTTGTAAAG+TGG - chr5_3:1538394-1538413 Msa0790680:intron 40.0%
GATATCCACATCACTGAACA+AGG + chr5_3:1539270-1539289 None:intergenic 40.0%
TGAGGTGTAAGCTTAGTTGT+AGG + chr5_3:1539410-1539429 None:intergenic 40.0%
! AAGTCTTATCCCACTAAGTG+GGG + chr5_3:1539560-1539579 None:intergenic 40.0%
! CAAGTCTTATCCCACTAAGT+GGG + chr5_3:1539561-1539580 None:intergenic 40.0%
ATGAGAGAATTGCTCCAACA+AGG - chr5_3:1539726-1539745 Msa0790680:CDS 40.0%
GAATCGTTATCTGTGGTTGA+AGG + chr5_3:1539753-1539772 None:intergenic 40.0%
! CTCTATTACGATGCTTGTTG+CGG + chr5_3:1539835-1539854 None:intergenic 40.0%
ATTAAACACGGGAGAACAAG+AGG - chr5_3:1539959-1539978 Msa0790680:CDS 40.0%
TTAGGAGTCATCGACAAATG+CGG + chr5_3:1540272-1540291 None:intergenic 40.0%
! GACTCCTAACGTTGCTTTAA+AGG - chr5_3:1540283-1540302 Msa0790680:intron 40.0%
TCTCCATTCCTAATCCAAGT+AGG - chr5_3:1540339-1540358 Msa0790680:intron 40.0%
! TTGCCTACTTGGATTAGGAA+TGG + chr5_3:1540345-1540364 None:intergenic 40.0%
AAGCTTCAGTCACTTCCATT+AGG - chr5_3:1540387-1540406 Msa0790680:intron 40.0%
GTCACTTCCATTAGGAGTTT+CGG - chr5_3:1540395-1540414 Msa0790680:intron 40.0%
AGTTTCGGAAGTTCCATGAA+TGG - chr5_3:1540410-1540429 Msa0790680:intron 40.0%
TTCAGATTCCTCACTTGTGA+AGG - chr5_3:1540493-1540512 Msa0790680:CDS 40.0%
AAGACTAGAAACAGTTCTCG+CGG - chr5_3:1540545-1540564 Msa0790680:intron 40.0%
TGAACTTCATGAGCGTCAAT+GGG - chr5_3:1540616-1540635 Msa0790680:intron 40.0%
!! AGCTTTTAACTCTGTGTCAC+CGG - chr5_3:1540694-1540713 Msa0790680:intron 40.0%
GTGCTCAGAAATCTCATAAC+TGG + chr5_3:1540734-1540753 None:intergenic 40.0%
AGGTGGATGTCAATTACTGT+TGG - chr5_3:1540787-1540806 Msa0790680:CDS 40.0%
!! GAAGCGTATGTTTGGTTCTA+CGG - chr5_3:1540900-1540919 Msa0790680:CDS 40.0%
!! ACTGATTTTGGTGTGTTTGG+GGG + chr5_3:1541123-1541142 None:intergenic 40.0%
TAAGCCTGTGTTTGGTATCA+CGG - chr5_3:1541192-1541211 Msa0790680:CDS 40.0%
! TACCGTGTCTTTTACGAAAG+TGG - chr5_3:1541248-1541267 Msa0790680:five_prime_UTR 40.0%
TCCATGGGCCTAGAATAAAA+AGG - chr5_3:1541374-1541393 Msa0790680:intron 40.0%
! TCCTTTTTATTCTAGGCCCA+TGG + chr5_3:1541378-1541397 None:intergenic 40.0%
TGAAGATACATGCAGTGTGT+TGG - chr5_3:1541566-1541585 Msa0790680:intron 40.0%
TGGAAGAATTGTCGAACCAT+TGG - chr5_3:1541634-1541653 Msa0790680:intron 40.0%
AGCTGCAATGTTCGCTTTAT+CGG + chr5_3:1541661-1541680 None:intergenic 40.0%
ACTCTTGGTTACCAGAATCA+AGG + chr5_3:1541713-1541732 None:intergenic 40.0%
AGGGACTTGTCTTCGAAAAA+TGG + chr5_3:1541831-1541850 None:intergenic 40.0%
CGAAGAAAAGGAATTTGCAC+TGG - chr5_3:1541971-1541990 Msa0790680:intron 40.0%
! TAGCACAAAGGTGTATGCAT+TGG - chr5_3:1542097-1542116 Msa0790680:intron 40.0%
TCTCGACATCCCTTAAAAGT+CGG + chr5_3:1542130-1542149 None:intergenic 40.0%
TTGAACAAGCTATCACGGTT+CGG - chr5_3:1542239-1542258 Msa0790680:intron 40.0%
ACTGGGCTCTCCTTATTATA+AGG - chr5_3:1542300-1542319 Msa0790680:five_prime_UTR 40.0%
CTGGGCTCTCCTTATTATAA+GGG - chr5_3:1542301-1542320 Msa0790680:five_prime_UTR 40.0%
CCGGAATGTCCCTTATAATA+AGG + chr5_3:1542313-1542332 None:intergenic 40.0%
TTATAAGGGACATTCCGGAT+TGG - chr5_3:1542315-1542334 Msa0790680:five_prime_UTR 40.0%
! AGTTGTCTGCTGGGTAATTT+TGG - chr5_3:1542461-1542480 Msa0790680:five_prime_UTR 40.0%
! TACCTTTTCTAACCCTTGCT+TGG + chr5_3:1542565-1542584 None:intergenic 40.0%
CAAGGGTTAGAAAAGGTAGT+TGG - chr5_3:1542567-1542586 Msa0790680:five_prime_UTR 40.0%
GCATCTTGATTCTTGAGAGA+AGG + chr5_3:1542612-1542631 None:intergenic 40.0%
CAAGAATCAAGATGCTAGAG+AGG - chr5_3:1542617-1542636 Msa0790680:five_prime_UTR 40.0%
GAGACATTTCAACGCGAGTT+TGG + chr5_3:1537198-1537217 None:intergenic 45.0%
TTCGTGTCAACCAAGTATGC+TGG - chr5_3:1537513-1537532 Msa0790680:CDS 45.0%
GGATGGTAAGGGATCTCTTT+CGG + chr5_3:1537552-1537571 None:intergenic 45.0%
CCAAGAGCAATTAGATGGGA+TGG + chr5_3:1537569-1537588 None:intergenic 45.0%
CCATCCCATCTAATTGCTCT+TGG - chr5_3:1537566-1537585 Msa0790680:CDS 45.0%
AATTGCTCTTGGGTTTCGGT+TGG - chr5_3:1537577-1537596 Msa0790680:CDS 45.0%
TGGCTAATTTGATAGGGGGA+GGG - chr5_3:1537798-1537817 Msa0790680:CDS 45.0%
ATTGTAGGGTCTGTTTGCGA+TGG - chr5_3:1537980-1537999 Msa0790680:CDS 45.0%
TTGTAGGGTCTGTTTGCGAT+GGG - chr5_3:1537981-1538000 Msa0790680:CDS 45.0%
! GTTTGCGATGGGAATTTTGG+AGG - chr5_3:1537992-1538011 Msa0790680:CDS 45.0%
!! AATTTTGGAGGGCAGGGTTA+TGG - chr5_3:1538004-1538023 Msa0790680:CDS 45.0%
CAAACGGTACTCCCTTGAAT+GGG - chr5_3:1538374-1538393 Msa0790680:intron 45.0%
!!! ACCAGATCCCCGCTTTTTTA+AGG - chr5_3:1538427-1538446 Msa0790680:intron 45.0%
ACCTTAAAAAAGCGGGGATC+TGG + chr5_3:1538431-1538450 None:intergenic 45.0%
AAGGATCTTTCCGCAGATAG+AGG - chr5_3:1538734-1538753 Msa0790680:intron 45.0%
! TGTTTGAACGCTGCCTTTTG+AGG - chr5_3:1539369-1539388 Msa0790680:CDS 45.0%
!! TTTGGCCTTGTAGCCTCAAA+AGG + chr5_3:1539385-1539404 None:intergenic 45.0%
! CCAAGTCTTATCCCACTAAG+TGG + chr5_3:1539562-1539581 None:intergenic 45.0%
CCACTTAGTGGGATAAGACT+TGG - chr5_3:1539559-1539578 Msa0790680:CDS 45.0%
TTCAGCAGAATCCAGGACAA+AGG + chr5_3:1539688-1539707 None:intergenic 45.0%
ATTCTGCTGAAGAAGAGGCT+GGG - chr5_3:1539697-1539716 Msa0790680:CDS 45.0%
CTGGAATTCTCATTCGCTAC+AGG + chr5_3:1540008-1540027 None:intergenic 45.0%
GGTGCGTAAAGAATCATGAC+TGG + chr5_3:1540027-1540046 None:intergenic 45.0%
CGGCTCAGAATTCACACTAT+CGG + chr5_3:1540048-1540067 None:intergenic 45.0%
CACGAATTCCATACTGATCG+TGG + chr5_3:1540079-1540098 None:intergenic 45.0%
ATGCGTGCCCGATATCTTTA+AGG - chr5_3:1540135-1540154 Msa0790680:intron 45.0%
GATCCTGTTGTCATTGCTTC+AGG - chr5_3:1540167-1540186 Msa0790680:intron 45.0%
TCTCCTGAAGCAATGACAAC+AGG + chr5_3:1540173-1540192 None:intergenic 45.0%
CTTCAGGAGAAACATACGAG+CGG - chr5_3:1540183-1540202 Msa0790680:intron 45.0%
AGCGGATGTGGATACAGAAA+TGG - chr5_3:1540201-1540220 Msa0790680:intron 45.0%
TCCTAATCCAAGTAGGCAAG+CGG - chr5_3:1540346-1540365 Msa0790680:intron 45.0%
GGAACTTCCGAAACTCCTAA+TGG + chr5_3:1540405-1540424 None:intergenic 45.0%
TGGCACGTTCAAACCATTCA+TGG + chr5_3:1540426-1540445 None:intergenic 45.0%
GAATGGTTTGAACGTGCCAA+TGG - chr5_3:1540427-1540446 Msa0790680:intron 45.0%
AGACTAGAAACAGTTCTCGC+GGG - chr5_3:1540546-1540565 Msa0790680:intron 45.0%
CAATCTCGTTCGCAGATACA+TGG - chr5_3:1540572-1540591 Msa0790680:intron 45.0%
GCAGATACATGGCTCATATC+TGG - chr5_3:1540583-1540602 Msa0790680:intron 45.0%
ACGCTCATGAAGTTCAGACA+AGG + chr5_3:1540612-1540631 None:intergenic 45.0%
CTGAACTTCATGAGCGTCAA+TGG - chr5_3:1540615-1540634 Msa0790680:intron 45.0%
ACATGCACTAAGCCTGTGTT+TGG - chr5_3:1541184-1541203 Msa0790680:CDS 45.0%
TGTACCGTGATACCAAACAC+AGG + chr5_3:1541199-1541218 None:intergenic 45.0%
! TGGAGAAGCTCTTGCTATAC+TGG - chr5_3:1541614-1541633 Msa0790680:intron 45.0%
TGTTCGCTTTATCGGACCAA+TGG + chr5_3:1541653-1541672 None:intergenic 45.0%
!! CTGGTAACCAAGAGTACCAA+CGG - chr5_3:1541718-1541737 Msa0790680:intron 45.0%
TAGCTTTCCGTTGGTACTCT+TGG + chr5_3:1541728-1541747 None:intergenic 45.0%
TGTTCGTACATCGTGTCTCT+CGG - chr5_3:1541786-1541805 Msa0790680:intron 45.0%
! TTCCTTTTCTTCGTCTGTGC+TGG + chr5_3:1541964-1541983 None:intergenic 45.0%
ACGCGTGGAATATTGTGAGT+TGG - chr5_3:1542019-1542038 Msa0790680:intron 45.0%
!! TTGTGAGTTGGTTATGGAGG+AGG - chr5_3:1542031-1542050 Msa0790680:intron 45.0%
!! TGTGAGTTGGTTATGGAGGA+GGG - chr5_3:1542032-1542051 Msa0790680:intron 45.0%
TGTGCTATCGTTTCCCACAT+TGG + chr5_3:1542084-1542103 None:intergenic 45.0%
TGTGGGAAACGATAGCACAA+AGG - chr5_3:1542085-1542104 Msa0790680:intron 45.0%
! TGGAACTGCTCCGACTTTTA+AGG - chr5_3:1542117-1542136 Msa0790680:intron 45.0%
! GGAACTGCTCCGACTTTTAA+GGG - chr5_3:1542118-1542137 Msa0790680:intron 45.0%
CATGTTTGCATCCACCAATC+CGG + chr5_3:1542332-1542351 None:intergenic 45.0%
TGACATACCAAAGCCAAGCA+AGG - chr5_3:1542549-1542568 Msa0790680:five_prime_UTR 45.0%
GACATACCAAAGCCAAGCAA+GGG - chr5_3:1542550-1542569 Msa0790680:five_prime_UTR 45.0%
TTCTAACCCTTGCTTGGCTT+TGG + chr5_3:1542559-1542578 None:intergenic 45.0%
AGCCAAGCAAGGGTTAGAAA+AGG - chr5_3:1542560-1542579 Msa0790680:five_prime_UTR 45.0%
CTTGAGAGAAGGGGAGAAAA+GGG + chr5_3:1542601-1542620 None:intergenic 45.0%
TCTTGAGAGAAGGGGAGAAA+AGG + chr5_3:1542602-1542621 None:intergenic 45.0%
GAATCAAGATGCTAGAGAGG+TGG - chr5_3:1542620-1542639 Msa0790680:five_prime_UTR 45.0%
GTGGTTAGTGCCATGTGATT+TGG - chr5_3:1542639-1542658 Msa0790680:five_prime_UTR 45.0%
!!! ATTAATATATATATTTTGAA+GGG - chr5_3:1542749-1542768 Msa0790680:five_prime_UTR 5.0%
TAAGGGATCTCTTTCGGTCC+TGG + chr5_3:1537546-1537565 None:intergenic 50.0%
GTGGCTAATTTGATAGGGGG+AGG - chr5_3:1537797-1537816 Msa0790680:CDS 50.0%
GGCTAATTTGATAGGGGGAG+GGG - chr5_3:1537799-1537818 Msa0790680:CDS 50.0%
GCTAATTTGATAGGGGGAGG+GGG - chr5_3:1537800-1537819 Msa0790680:CDS 50.0%
GGGGGAATATGTTAGCAGCA+AGG - chr5_3:1537818-1537837 Msa0790680:CDS 50.0%
!! GATGGGAATTTTGGAGGGCA+GGG - chr5_3:1537998-1538017 Msa0790680:CDS 50.0%
CTTAAGGGTCTGTTTGGGAG+GGG + chr5_3:1538150-1538169 None:intergenic 50.0%
GCTTAAGGGTCTGTTTGGGA+GGG + chr5_3:1538151-1538170 None:intergenic 50.0%
AGCTTAAGGGTCTGTTTGGG+AGG + chr5_3:1538152-1538171 None:intergenic 50.0%
GCAAACGGTACTCCCTTGAA+TGG - chr5_3:1538373-1538392 Msa0790680:intron 50.0%
! AGATAGAGGAAGCACGTCCT+CGG - chr5_3:1538748-1538767 Msa0790680:intron 50.0%
CAGAGCAGGTATTCCTGATG+AGG + chr5_3:1538775-1538794 None:intergenic 50.0%
CTCATCAGGAATACCTGCTC+TGG - chr5_3:1538773-1538792 Msa0790680:intron 50.0%
CTGGTTAGCAAAACCAGAGC+AGG + chr5_3:1538789-1538808 None:intergenic 50.0%
! TCCTGTTATGTTGGCTGCAG+AGG - chr5_3:1539182-1539201 Msa0790680:CDS 50.0%
ACCTCTGCAGCCAACATAAC+AGG + chr5_3:1539186-1539205 None:intergenic 50.0%
TCCATTTGGACCCCACTTAG+TGG - chr5_3:1539547-1539566 Msa0790680:CDS 50.0%
CCATTTGGACCCCACTTAGT+GGG - chr5_3:1539548-1539567 Msa0790680:CDS 50.0%
CCTCTTCTTCAGCAGAATCC+AGG + chr5_3:1539695-1539714 None:intergenic 50.0%
CCTGGATTCTGCTGAAGAAG+AGG - chr5_3:1539692-1539711 Msa0790680:CDS 50.0%
GATTCTGCTGAAGAAGAGGC+TGG - chr5_3:1539696-1539715 Msa0790680:CDS 50.0%
CTGTGGTTGAAGGACCTTGT+TGG + chr5_3:1539743-1539762 None:intergenic 50.0%
AAACACGGGAGAACAAGAGG+AGG - chr5_3:1539962-1539981 Msa0790680:CDS 50.0%
TGCGACTCTAATCAACTCGC+TGG + chr5_3:1540102-1540121 None:intergenic 50.0%
GTTGATTAGAGTCGCACCTC+CGG - chr5_3:1540106-1540125 Msa0790680:intron 50.0%
GAGAAACATACGAGCGGATG+TGG - chr5_3:1540189-1540208 Msa0790680:intron 50.0%
TCCGCTTGCCTACTTGGATT+AGG + chr5_3:1540350-1540369 None:intergenic 50.0%
ATGTCTTCCGCTTGCCTACT+TGG + chr5_3:1540356-1540375 None:intergenic 50.0%
AAGCGGAAGACATTCGCTCA+TGG - chr5_3:1540363-1540382 Msa0790680:intron 50.0%
AGCGGAAGACATTCGCTCAT+GGG - chr5_3:1540364-1540383 Msa0790680:intron 50.0%
!! ACGACTAGCCTTCACAAGTG+AGG + chr5_3:1540504-1540523 None:intergenic 50.0%
! TCACTTGTGAAGGCTAGTCG+TGG - chr5_3:1540503-1540522 Msa0790680:CDS 50.0%
CATGACACAAAAGCTCTGCG+AGG - chr5_3:1540767-1540786 Msa0790680:CDS 50.0%
AGGTTAGTGAACGCACGTTC+TGG - chr5_3:1541280-1541299 Msa0790680:intron 50.0%
CTCCTCGAGACTGAAGCAAT+TGG - chr5_3:1541594-1541613 Msa0790680:intron 50.0%
CTCCAATTGCTTCAGTCTCG+AGG + chr5_3:1541599-1541618 None:intergenic 50.0%
GTTCGTACATCGTGTCTCTC+GGG - chr5_3:1541787-1541806 Msa0790680:intron 50.0%
GTCCAGCACAGACGAAGAAA+AGG - chr5_3:1541959-1541978 Msa0790680:intron 50.0%
TTAAGGGATGTCGAGAGCGA+AGG - chr5_3:1542134-1542153 Msa0790680:intron 50.0%
! TAAGGGACATTCCGGATTGG+TGG - chr5_3:1542318-1542337 Msa0790680:five_prime_UTR 50.0%
TCAGCTCAGTGCCTAACCTA+AGG + chr5_3:1542693-1542712 None:intergenic 50.0%
!! CGATGGGAATTTTGGAGGGC+AGG - chr5_3:1537997-1538016 Msa0790680:CDS 55.0%
! GGGCAGGGTTATGGAGTACT+AGG - chr5_3:1538013-1538032 Msa0790680:CDS 55.0%
TCTGTTTGGGAGGGGAGGAT+AGG + chr5_3:1538142-1538161 None:intergenic 55.0%
GGACGTGCTTCCTCTATCTG+CGG + chr5_3:1538747-1538766 None:intergenic 55.0%
GGTATTCCTGATGAGGACCG+AGG + chr5_3:1538768-1538787 None:intergenic 55.0%
!!! CGCTGCCTTTTGAGGCTACA+AGG - chr5_3:1539377-1539396 Msa0790680:CDS 55.0%
CCCACTAAGTGGGGTCCAAA+TGG + chr5_3:1539551-1539570 None:intergenic 55.0%
TAGGCGTGTCACCTTTGTCC+TGG - chr5_3:1539674-1539693 Msa0790680:CDS 55.0%
TGCTGAAGAAGAGGCTGGGA+GGG - chr5_3:1539701-1539720 Msa0790680:CDS 55.0%
ATCGGGCACGCATATTCCTC+CGG + chr5_3:1540128-1540147 None:intergenic 55.0%
GACACAAAAGCTCTGCGAGG+TGG - chr5_3:1540770-1540789 Msa0790680:CDS 55.0%
! AGTGAACGCACGTTCTGGAC+AGG - chr5_3:1541285-1541304 Msa0790680:intron 55.0%
CTCTTTGTGCTCTCAACGCG+TGG - chr5_3:1542004-1542023 Msa0790680:intron 55.0%
AAGGGTCTGTTTGGGAGGGG+AGG + chr5_3:1538147-1538166 None:intergenic 60.0%
CTGCTGAAGAAGAGGCTGGG+AGG - chr5_3:1539700-1539719 Msa0790680:CDS 60.0%
GATTAGAGTCGCACCTCCGG+AGG - chr5_3:1540109-1540128 Msa0790680:intron 60.0%
! GCACGTTCTGGACAGGACGT+GGG - chr5_3:1541292-1541311 Msa0790680:intron 60.0%
GCACGTCCTCGGTCCTCATC+AGG - chr5_3:1538759-1538778 Msa0790680:intron 65.0%
GGGCACGCATATTCCTCCGG+AGG + chr5_3:1540125-1540144 None:intergenic 65.0%
! CGCACGTTCTGGACAGGACG+TGG - chr5_3:1541291-1541310 Msa0790680:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 1536851 1542781 1536851 ID=Msa0790680;Name=Msa0790680
chr5_3 mRNA 1536851 1542781 1536851 ID=Msa0790680-mRNA-1;Parent=Msa0790680;Name=Msa0790680-mRNA-1;_AED=0.09;_eAED=0.09;_QI=531|1|1|1|0.8|0.66|6|483|760
chr5_3 exon 1536851 1538087 1536851 ID=Msa0790680-mRNA-1:exon:580;Parent=Msa0790680-mRNA-1
chr5_3 exon 1538804 1539981 1538804 ID=Msa0790680-mRNA-1:exon:579;Parent=Msa0790680-mRNA-1
chr5_3 exon 1540429 1540536 1540429 ID=Msa0790680-mRNA-1:exon:578;Parent=Msa0790680-mRNA-1
chr5_3 exon 1540763 1540948 1540763 ID=Msa0790680-mRNA-1:exon:577;Parent=Msa0790680-mRNA-1
chr5_3 exon 1541184 1541270 1541184 ID=Msa0790680-mRNA-1:exon:576;Parent=Msa0790680-mRNA-1
chr5_3 exon 1542281 1542781 1542281 ID=Msa0790680-mRNA-1:exon:575;Parent=Msa0790680-mRNA-1
chr5_3 five_prime_UTR 1542281 1542781 1542281 ID=Msa0790680-mRNA-1:five_prime_utr;Parent=Msa0790680-mRNA-1
chr5_3 five_prime_UTR 1541241 1541270 1541241 ID=Msa0790680-mRNA-1:five_prime_utr;Parent=Msa0790680-mRNA-1
chr5_3 CDS 1541184 1541240 1541184 ID=Msa0790680-mRNA-1:cds;Parent=Msa0790680-mRNA-1
chr5_3 CDS 1540763 1540948 1540763 ID=Msa0790680-mRNA-1:cds;Parent=Msa0790680-mRNA-1
chr5_3 CDS 1540429 1540536 1540429 ID=Msa0790680-mRNA-1:cds;Parent=Msa0790680-mRNA-1
chr5_3 CDS 1538804 1539981 1538804 ID=Msa0790680-mRNA-1:cds;Parent=Msa0790680-mRNA-1
chr5_3 CDS 1537334 1538087 1537334 ID=Msa0790680-mRNA-1:cds;Parent=Msa0790680-mRNA-1
chr5_3 three_prime_UTR 1536851 1537333 1536851 ID=Msa0790680-mRNA-1:three_prime_utr;Parent=Msa0790680-mRNA-1
Gene Sequence

>Msa0790680

ATGGGAACTGATAGTTGTAAAGTGGCAGAGACATTACCAGATCCCCGCTTTTTTAAGGTACATCGTAGACTCTGCACAGAACTCAAGAAATTAGTTGATAAGGTGTTAAGGATCTTTCCGCAGATAGAGGAAGCACGTCCTCGGTCCTCATCAGGAATACCTGCTCTGGTTTTGCTAACCAGTACAATTGATAAAGCCAAACAACTTCTGCAAAATTGCTCTGATTCTAGTGTACTTTACCTGGCAATAACAGGGGAGTCAATTCTCTCAAAATGCCAAAAGGCAAGAAAGTCATTAGAGAAAAGCTTAGTCCAGATTCAAGATATAGTTCCTGTTATGTTGGCTGCAGAGATTTCTCGAATAGTTGATGATCTTAGGCGTGTCACCTTTGTCCTGGATTCTGCTGAAGAAGAGGCTGGGAGGGTTATGAGAGAATTGCTCCAACAAGGTCCTTCAACCACAGATAACGATTCAAAGGAAAACTCAGACGTAAAATCTCTTCAGTTTGCAGCGGCAAGACTTAATATCACATCCGCAACAAGCATCGTAATAGAGAGAAGATCTATTAAGAAGTTACTACAAAAACTTGGACAAAATGAGGAAACCAAAAAGGTGATCTTGAAAAATCTGTTGTATCTTCTGATAAAGTATGGAAACTTATTAAACACGGGAGAACAAGAGGAGGTCTATTCTTATCGTGAAAAACCTGTAGCGAATGAGAATTCCAGTCATGATTCTTTACGCACCGATAGTGTGAATTCTGAGCCGTATTCAAACCACGATCAGTATGGAATTCGTGCCAGCGAGTTGATTAGAGTCGCACCTCCGGAGGAATATGCGTGCCCGATATCTTTAAGGTTGATGTATGATCCTGTTGTCATTGCTTCAGGAGAAACATACGAGCGGATGTGGATACAGAAATGGTTTGATGAGGGTAATGTTATATGCCCGAAAACTAAAAAGAAATTGCCGCATTTGTCGATGACTCCTAACGTTGCTTTAAAGGAATTAATATCAAAGTGGTGCAAAACTAATGACGTCTCCATTCCTAATCCAAGTAGGCAAGCGGAAGACATTCGCTCATGGGAAGCTTCAGTCACTTCCATTAGGAGTTTCGGAAGTTCCATGAATGGTTTGAACGTGCCAATGGATCTTAGTAACGTATCATTTGGATCGGTAGATAACAGTTATAATTCAGATTCCTCACTTGTGAAGGCTAGTCGTGGCTTAAATTCGATGTTGATCAAGACTAGAAACAGTTCTCGCGGGCATCAATCTCGTTCGCAGATACATGGCTCATATCTGGCATCCTTGTCTGAACTTCATGAGCGTCAATGGGATTCACAGTGCCAAGTAGTCAAAGATATGAAAATAGATTTCAAATGCAATTCCGAAGCTTTTAACTCTGTGTCACCGGATAATTTCATTGACCCAGTTATGAGATTTCTGAGCACTGCATGTGATAAGCATGACACAAAAGCTCTGCGAGGTGGATGTCAATTACTGTTGGAATTTACAAAGTACTGCAGAAATGGTGTGATAAACTTAAGTGAAGATACATGCAGTGTGTTGGCAAGTCTCCTCGAGACTGAAGCAATTGGAGAAGCTCTTGCTATACTGGAAGAATTGTCGAACCATTGGTCCGATAAAGCGAACATTGCAGCTTCCAATGCACTGACTTCTATTTTAAAGATCCTTGATTCTGGTAACCAAGAGTACCAACGGAAAGCTATTAGAATAATGTGCAATTTTTCATCCAATTCTGAATTTTGTTCGTACATCGTGTCTCTCGGGTGCATCCCAAAATTACTACCATTTTTCGAAGACAAGTCCCTTTCAAGAGACTGTATATGCATATTGAAAAACCTTTGTGATACTAAAGATGGTAGGGTATCTGTTGTTGAAACTAAGGGATGCATGTCTTGTGTTGTTGAAATACTTGGGTCCAGCACAGACGAAGAAAAGGAATTTGCACTGGCGATTGTACTCTCTTTGTGCTCTCAACGCGTGGAATATTGTGAGTTGGTTATGGAGGAGGGTATTATACCGTATCTTGTCAATATCTCCAATGTGGGAAACGATAGCACAAAGGTGTATGCATTGGAACTGCTCCGACTTTTAAGGGATGTCGAGAGCGAAGGTTGCTTTGAGCAGAATCTCAACAAATCTAGAGATTCCAACGATCAATATGAAGAAAAGAAATCGTCAAAGAAATCCACATTTTTGAACAAGCTATCACGGTTCGGAAAATCAAGTTCAATTTCATCAAAAAACAAGAGATAA
Protein sequence

>Msa0790680

MGTDSCKVAETLPDPRFFKVHRRLCTELKKLVDKVLRIFPQIEEARPRSSSGIPALVLLTSTIDKAKQLLQNCSDSSVLYLAITGESILSKCQKARKSLEKSLVQIQDIVPVMLAAEISRIVDDLRRVTFVLDSAEEEAGRVMRELLQQGPSTTDNDSKENSDVKSLQFAAARLNITSATSIVIERRSIKKLLQKLGQNEETKKVILKNLLYLLIKYGNLLNTGEQEEVYSYREKPVANENSSHDSLRTDSVNSEPYSNHDQYGIRASELIRVAPPEEYACPISLRLMYDPVVIASGETYERMWIQKWFDEGNVICPKTKKKLPHLSMTPNVALKELISKWCKTNDVSIPNPSRQAEDIRSWEASVTSIRSFGSSMNGLNVPMDLSNVSFGSVDNSYNSDSSLVKASRGLNSMLIKTRNSSRGHQSRSQIHGSYLASLSELHERQWDSQCQVVKDMKIDFKCNSEAFNSVSPDNFIDPVMRFLSTACDKHDTKALRGGCQLLLEFTKYCRNGVINLSEDTCSVLASLLETEAIGEALAILEELSNHWSDKANIAASNALTSILKILDSGNQEYQRKAIRIMCNFSSNSEFCSYIVSLGCIPKLLPFFEDKSLSRDCICILKNLCDTKDGRVSVVETKGCMSCVVEILGSSTDEEKEFALAIVLSLCSQRVEYCELVMEEGIIPYLVNISNVGNDSTKVYALELLRLLRDVESEGCFEQNLNKSRDSNDQYEEKKSSKKSTFLNKLSRFGKSSSISSKNKR*