AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1029580

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1029580 MtrunA17_Chr7g0250071 99.301 143 1 0 1 143 1 143 1.54e-104 294
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1029580 AT2G20930.1 86.429 140 19 0 1 140 1 140 4.05e-89 255

Find 60 sgRNAs with CRISPR-Local

Find 371 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCAAAATGACATCGTTTA+AGG 0.172925 7_1:-63069604 None:intergenic
TCAAGTATCAGGAAATTTAA+AGG 0.234872 7_1:-63074743 None:intergenic
TAACTTAACCTTCAAGTATC+AGG 0.344198 7_1:-63074754 None:intergenic
TTAAATTTCCTGATACTTGA+AGG 0.354303 7_1:+63074746 Msa1029580:three_prime_UTR
AGCATCGGTCCAGATTTCTT+AGG 0.357123 7_1:-63070706 None:intergenic
TACTCGATGCATTGCTGTCC+TGG 0.363704 7_1:+63074837 Msa1029580:three_prime_UTR
TTCTACCTCCCAACCATTCC+AGG 0.370649 7_1:-63074855 None:intergenic
TACGAAGGTGAAATTTATCT+TGG 0.375689 7_1:+63070898 Msa1029580:CDS
CACGTTTGAACCGGTTGAAC+CGG 0.378751 7_1:+63069770 Msa1029580:five_prime_UTR
ACGTGAACCGGATCTGTTAT+TGG 0.379792 7_1:-63069752 None:intergenic
CAAGTATCAGGAAATTTAAA+GGG 0.381505 7_1:-63074742 None:intergenic
GTGAACAATCCTAAGAAATC+TGG 0.390754 7_1:+63070697 Msa1029580:intron
AGCACAATCGTCAAGTCATT+TGG 0.391002 7_1:+63074476 Msa1029580:CDS
TATCTTGGTGACCACGGATC+TGG 0.405812 7_1:+63070913 Msa1029580:CDS
ATCAAAATGACATCGTTTAA+GGG 0.412132 7_1:-63069603 None:intergenic
TTCAAATCCATTCCATGTGC+CGG 0.437254 7_1:+63074415 Msa1029580:CDS
GCCGGACCGACCGGTTCAAC+CGG 0.440457 7_1:-63069780 None:intergenic
CGTCGCCGTCGTTGGTCACC+AGG 0.445406 7_1:+63070028 Msa1029580:CDS
CAACCGGTTCAAACGTGAAC+CGG 0.455973 7_1:-63069764 None:intergenic
ACCGGTTGAACCGGTCGGTC+CGG 0.461770 7_1:+63069779 Msa1029580:five_prime_UTR
GATCCGGTTCACGTTTGAAC+CGG 0.469733 7_1:+63069761 Msa1029580:five_prime_UTR
CATTGCTGTCCTGGAATGGT+TGG 0.471182 7_1:+63074846 Msa1029580:three_prime_UTR
ATCGTCTGCGTCGCCGTCGT+TGG 0.474649 7_1:+63070020 Msa1029580:CDS
CAAAACAAGAGTAATTAAAA+CGG 0.476845 7_1:-63069803 None:intergenic
AAAACAAGAGTAATTAAAAC+GGG 0.477284 7_1:-63069802 None:intergenic
TTAAAACGGGCCGGACCGAC+CGG 0.484658 7_1:-63069789 None:intergenic
TCAAATCCATTCCATGTGCC+GGG 0.503373 7_1:+63074416 Msa1029580:CDS
TTGTGCTTATATATCATCAA+AGG 0.527442 7_1:-63074544 None:intergenic
ATTGCTGTCCTGGAATGGTT+GGG 0.533037 7_1:+63074847 Msa1029580:three_prime_UTR
TTCAATCTATTCAGTGCGTG+CGG 0.545776 7_1:+63069950 Msa1029580:five_prime_UTR
GATGCATTGCTGTCCTGGAA+TGG 0.550924 7_1:+63074842 Msa1029580:three_prime_UTR
TCAATCTATTCAGTGCGTGC+GGG 0.552720 7_1:+63069951 Msa1029580:five_prime_UTR
GATCGGACCAATAACAGATC+CGG 0.554996 7_1:+63069745 Msa1029580:five_prime_UTR
CTTCACCGGCGAAGTGTCGA+AGG 0.560326 7_1:-63069994 None:intergenic
GCGAGCAATGGACGATGTGG+TGG 0.569676 7_1:-63070215 None:intergenic
ATTGTACATTCAGAGCTTCA+CGG 0.571244 7_1:+63070170 Msa1029580:CDS
CTACGACATCGAGCGAGCAA+TGG 0.583024 7_1:-63070227 None:intergenic
GCTGCATGAAAATCTAATAC+CGG 0.586107 7_1:+63074509 Msa1029580:exon
CACTGAATAGATTGAACGAA+GGG 0.588094 7_1:-63069943 None:intergenic
CAAGAGTAATTAAAACGGGC+CGG 0.588974 7_1:-63069798 None:intergenic
AATAGATTGAACGAAGGGAA+AGG 0.589152 7_1:-63069938 None:intergenic
CTCGATGTCGTAGACGAACG+AGG 0.602482 7_1:+63070237 Msa1029580:CDS
TGGATATCTGACTAATACGA+AGG 0.606602 7_1:+63070883 Msa1029580:CDS
ACGCAGACGATCATCTTCAC+CGG 0.606742 7_1:-63070008 None:intergenic
GTAGACCTTCGACACTTCGC+CGG 0.608679 7_1:+63069989 Msa1029580:five_prime_UTR
GGGAAAACCGTCGGTTCGTG+CGG 0.611078 7_1:-63069670 None:intergenic
TCAAAGGATCACATCAGCAC+CGG 0.612385 7_1:-63074528 None:intergenic
ACTTAAACCGCACGAACCGA+CGG 0.615195 7_1:+63069663 Msa1029580:five_prime_UTR
GAAATTTATCTTGGTGACCA+CGG 0.623105 7_1:+63070907 Msa1029580:CDS
GTGAAGCTCTGAATGTACAA+TGG 0.631501 7_1:-63070168 None:intergenic
ATCTTTAACATCCAGATCCG+TGG 0.641072 7_1:-63070924 None:intergenic
CGAGCGAGCAATGGACGATG+TGG 0.648936 7_1:-63070218 None:intergenic
CACCGAGGTAAAATATGTGT+AGG 0.650057 7_1:+63074623 Msa1029580:three_prime_UTR
TTTGAACCGGTTGAACCGGT+CGG 0.651245 7_1:+63069774 Msa1029580:five_prime_UTR
AAAATGACATCGTTTAAGGG+AGG 0.666829 7_1:-63069600 None:intergenic
ACTCACCTGGTGACCAACGA+CGG 0.674353 7_1:-63070033 None:intergenic
GCACTGAATAGATTGAACGA+AGG 0.701914 7_1:-63069944 None:intergenic
CGAAGTGTCGAAGGTCTACG+TGG 0.703239 7_1:-63069985 None:intergenic
GTACATTCAGAGCTTCACGG+AGG 0.780616 7_1:+63070173 Msa1029580:CDS
TTAGGAATGGAATTTCACCG+AGG 0.782153 7_1:+63074608 Msa1029580:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAATTTTTTATTTTATT+TGG + chr7_1:63070303-63070322 Msa1029580:intron 0.0%
!!! AAATTTCAATATTTTTTTGT+TGG + chr7_1:63070412-63070431 Msa1029580:intron 10.0%
!! AGTAAAAGAATAAAATTAAA+GGG - chr7_1:63072174-63072193 None:intergenic 10.0%
!! TAGTAAAAGAATAAAATTAA+AGG - chr7_1:63072175-63072194 None:intergenic 10.0%
!!! TATATCATATGTATTTTTTT+TGG + chr7_1:63072396-63072415 Msa1029580:intron 10.0%
!!! TTTATTTTATTTGGAGATTT+AGG + chr7_1:63070312-63070331 Msa1029580:intron 15.0%
!!! AATATTTTTTTGTTGGATTT+GGG + chr7_1:63070419-63070438 Msa1029580:intron 15.0%
!! TTAATACTACAAAAACTAAA+AGG + chr7_1:63071394-63071413 Msa1029580:intron 15.0%
!! TAATACTACAAAAACTAAAA+GGG + chr7_1:63071395-63071414 Msa1029580:intron 15.0%
!!! CATATCTTAGATTTTATATT+GGG - chr7_1:63072615-63072634 None:intergenic 15.0%
!!! ACATATCTTAGATTTTATAT+TGG - chr7_1:63072616-63072635 None:intergenic 15.0%
!! TTAGAATTCAATTAAAAGAA+CGG - chr7_1:63074216-63074235 None:intergenic 15.0%
!!! TTCTTTTAATTGAATTCTAA+TGG + chr7_1:63074216-63074235 Msa1029580:intron 15.0%
!!! TCTTTTAATTGAATTCTAAT+GGG + chr7_1:63074217-63074236 Msa1029580:intron 15.0%
!! AAGTAAAAAGAAATAGAAAA+AGG - chr7_1:63074572-63074591 None:intergenic 15.0%
!!! TAAACATGTAATCTTTTAAA+TGG + chr7_1:63074785-63074804 Msa1029580:three_prime_UTR 15.0%
!!! AAACATGTAATCTTTTAAAT+GGG + chr7_1:63074786-63074805 Msa1029580:three_prime_UTR 15.0%
!! AAAACAAGAGTAATTAAAAC+GGG - chr7_1:63069805-63069824 None:intergenic 20.0%
!! CAAAACAAGAGTAATTAAAA+CGG - chr7_1:63069806-63069825 None:intergenic 20.0%
!!! TGAAATTTTCTCTAAACTTA+TGG - chr7_1:63070400-63070419 None:intergenic 20.0%
!!! CAATATTTTTTTGTTGGATT+TGG + chr7_1:63070418-63070437 Msa1029580:intron 20.0%
!! TACAAAATATTGTGAAATAG+TGG + chr7_1:63071525-63071544 Msa1029580:intron 20.0%
!!! TATGATTTTTGAGTGAAATT+GGG + chr7_1:63071645-63071664 Msa1029580:intron 20.0%
!! AATTAAAGGGAAAAAGATAT+AGG - chr7_1:63072161-63072180 None:intergenic 20.0%
!!! AATAATTTTAGAAATCCTGA+AGG + chr7_1:63073109-63073128 Msa1029580:intron 20.0%
!!! ATAATTTTAGAAATCCTGAA+GGG + chr7_1:63073110-63073129 Msa1029580:intron 20.0%
!! CTCTTTACTATTACAAAAAT+TGG - chr7_1:63073230-63073249 None:intergenic 20.0%
!!! CAATTTTTGTAATAGTAAAG+AGG + chr7_1:63073228-63073247 Msa1029580:intron 20.0%
!! GTAAAAGAAATAATTAGCAA+GGG - chr7_1:63073281-63073300 None:intergenic 20.0%
!! AGTAAAAGAAATAATTAGCA+AGG - chr7_1:63073282-63073301 None:intergenic 20.0%
!! TATCATCAATTTGTATTTCT+GGG - chr7_1:63073858-63073877 None:intergenic 20.0%
!! TTTGTAATTTAGTATTCCTT+AGG + chr7_1:63074590-63074609 Msa1029580:intron 20.0%
!!! AACATGTAATCTTTTAAATG+GGG + chr7_1:63074787-63074806 Msa1029580:three_prime_UTR 20.0%
! ATCAAAATGACATCGTTTAA+GGG - chr7_1:63069606-63069625 None:intergenic 25.0%
! TATCAAAATGACATCGTTTA+AGG - chr7_1:63069607-63069626 None:intergenic 25.0%
!!! TTTTTTTTTTGTGCTGCAAA+TGG + chr7_1:63070360-63070379 Msa1029580:intron 25.0%
!!! AATTTTTTTTCTCTTACCGT+TGG + chr7_1:63070442-63070461 Msa1029580:intron 25.0%
!!! ATTTTTTTTCTCTTACCGTT+GGG + chr7_1:63070443-63070462 Msa1029580:intron 25.0%
!!! TTATATTGTTTGCCTTGTTT+TGG + chr7_1:63070642-63070661 Msa1029580:intron 25.0%
!!! TATATTGTTTGCCTTGTTTT+GGG + chr7_1:63070643-63070662 Msa1029580:intron 25.0%
!! CACACTTTGTAATTTTCAAT+TGG - chr7_1:63070760-63070779 None:intergenic 25.0%
! ATTTACGTAGTATAATTTCC+TGG + chr7_1:63070995-63071014 Msa1029580:intron 25.0%
! CTAATGAAAAACATAATTCC+AGG - chr7_1:63071016-63071035 None:intergenic 25.0%
! AAACATAATTCCAGGAAATT+GGG - chr7_1:63071008-63071027 None:intergenic 25.0%
! AAAACATAATTCCAGGAAAT+TGG - chr7_1:63071009-63071028 None:intergenic 25.0%
! CTAATGAAAAACATAATTCC+AGG - chr7_1:63071016-63071035 None:intergenic 25.0%
!! AAGCATGTATTTTGTATTCA+TGG + chr7_1:63071146-63071165 Msa1029580:intron 25.0%
! TTTAGTTGTATTAGTTAGAC+AGG + chr7_1:63071367-63071386 Msa1029580:intron 25.0%
! TTAGTTGTATTAGTTAGACA+GGG + chr7_1:63071368-63071387 Msa1029580:intron 25.0%
! TTGACATCATTGAATAATAG+TGG + chr7_1:63071616-63071635 Msa1029580:intron 25.0%
! TGACATCATTGAATAATAGT+GGG + chr7_1:63071617-63071636 Msa1029580:intron 25.0%
!!! CTATGATTTTTGAGTGAAAT+TGG + chr7_1:63071644-63071663 Msa1029580:intron 25.0%
! AATGACTAAAGAGATCATTT+CGG - chr7_1:63072302-63072321 None:intergenic 25.0%
!!! TCTGTCAACTTATTTTATTC+TGG + chr7_1:63072324-63072343 Msa1029580:intron 25.0%
!!! TAATTTTAGAAATCCTGAAG+GGG + chr7_1:63073111-63073130 Msa1029580:intron 25.0%
!!! TTTTTGATAATGCTTGAGAA+CGG - chr7_1:63073318-63073337 None:intergenic 25.0%
! TCAAAAAATGTCTATCTCTT+TGG + chr7_1:63073331-63073350 Msa1029580:intron 25.0%
! TCATTAATTAAGGTACATGT+TGG + chr7_1:63073441-63073460 Msa1029580:intron 25.0%
! ATGAAGCTACTATAAATCAT+AGG + chr7_1:63073524-63073543 Msa1029580:intron 25.0%
! CAATGCAAAATATCTATCTT+TGG - chr7_1:63073589-63073608 None:intergenic 25.0%
!! CAAAGATAGATATTTTGCAT+TGG + chr7_1:63073587-63073606 Msa1029580:intron 25.0%
! CTATCAACAAATTTGGAAAA+AGG - chr7_1:63073617-63073636 None:intergenic 25.0%
! GAATGATCTATCAACAAATT+TGG - chr7_1:63073624-63073643 None:intergenic 25.0%
! ATACTGGATCATATATACAA+AGG - chr7_1:63073748-63073767 None:intergenic 25.0%
! CTATCATCAATTTGTATTTC+TGG - chr7_1:63073859-63073878 None:intergenic 25.0%
!! CAGAAATACAAATTGATGAT+AGG + chr7_1:63073857-63073876 Msa1029580:intron 25.0%
!!! TATATAACTTTTTTTCCCAC+AGG + chr7_1:63073935-63073954 Msa1029580:intron 25.0%
!! TTTTGTGAAAGAAAACATGT+AGG - chr7_1:63074130-63074149 None:intergenic 25.0%
! TTTCTTTCACAAAATATGAC+AGG + chr7_1:63074136-63074155 Msa1029580:intron 25.0%
!! ATTCTAATGGGTAATACTAT+TGG + chr7_1:63074229-63074248 Msa1029580:intron 25.0%
! CAAACAGTACAATATTTCTT+AGG - chr7_1:63074322-63074341 None:intergenic 25.0%
! CTAAGAAATATTGTACTGTT+TGG + chr7_1:63074320-63074339 Msa1029580:intron 25.0%
! TTGTGCTTATATATCATCAA+AGG - chr7_1:63074547-63074566 None:intergenic 25.0%
! AATTTAGTATTCCTTAGGAA+TGG + chr7_1:63074595-63074614 Msa1029580:intron 25.0%
! CAAGTATCAGGAAATTTAAA+GGG - chr7_1:63074745-63074764 None:intergenic 25.0%
! TCAAGTATCAGGAAATTTAA+AGG - chr7_1:63074746-63074765 None:intergenic 25.0%
! TTAAATTTCCTGATACTTGA+AGG + chr7_1:63074746-63074765 Msa1029580:three_prime_UTR 25.0%
!! ACATGTAATCTTTTAAATGG+GGG + chr7_1:63074788-63074807 Msa1029580:three_prime_UTR 25.0%
CTTTCAAAAATCTCAAAACG+CGG + chr7_1:63069633-63069652 Msa1029580:five_prime_UTR 30.0%
!!! TTTTTTGATTGGACGGTTTT+TGG + chr7_1:63069718-63069737 Msa1029580:five_prime_UTR 30.0%
!! ATTATTATCAGTGTCGTTTC+CGG - chr7_1:63070496-63070515 None:intergenic 30.0%
!!! ATATTGTTTGCCTTGTTTTG+GGG + chr7_1:63070644-63070663 Msa1029580:intron 30.0%
TCTGATGAAATGTGTTTGAT+TGG + chr7_1:63070672-63070691 Msa1029580:intron 30.0%
TATAACCCAACAATGAAAAG+TGG + chr7_1:63070821-63070840 Msa1029580:intron 30.0%
ATAACCCAACAATGAAAAGT+GGG + chr7_1:63070822-63070841 Msa1029580:intron 30.0%
TACGAAGGTGAAATTTATCT+TGG + chr7_1:63070898-63070917 Msa1029580:CDS 30.0%
TGAGTATCAATAGAAGTTGA+TGG + chr7_1:63070963-63070982 Msa1029580:intron 30.0%
TTCAAGAAGACAAGGAAATT+GGG - chr7_1:63071070-63071089 None:intergenic 30.0%
ATTCAAGAAGACAAGGAAAT+TGG - chr7_1:63071071-63071090 None:intergenic 30.0%
AATTTCCTTGTCTTCTTGAA+TGG + chr7_1:63071070-63071089 Msa1029580:intron 30.0%
! CATGTATTTTGTATTCATGG+TGG + chr7_1:63071149-63071168 Msa1029580:intron 30.0%
! ATTTTCCATTCTTCCATTGA+AGG - chr7_1:63071336-63071355 None:intergenic 30.0%
AATTGTTAAATAGCGCATAG+CGG + chr7_1:63071432-63071451 Msa1029580:intron 30.0%
CAAGAATGTACAATGGAAAT+GGG - chr7_1:63071714-63071733 None:intergenic 30.0%
CACATTCATTAGAACTTAGA+AGG + chr7_1:63071750-63071769 Msa1029580:intron 30.0%
CACAAGAAATACATGACAAT+AGG - chr7_1:63071876-63071895 None:intergenic 30.0%
GTGTAGAATCTGTATTTGTT+AGG + chr7_1:63071893-63071912 Msa1029580:intron 30.0%
ATAGAAATACAAAGCGAAGA+AGG + chr7_1:63071944-63071963 Msa1029580:intron 30.0%
TGGAGAAGTAAGGAAAAATT+GGG + chr7_1:63072111-63072130 Msa1029580:intron 30.0%
!!! CATTTTCCAGTTCTGAAATT+TGG + chr7_1:63072259-63072278 Msa1029580:intron 30.0%
AATGAACCAAATTTCAGAAC+TGG - chr7_1:63072268-63072287 None:intergenic 30.0%
! TCTGAAATTTGGTTCATTTC+AGG + chr7_1:63072270-63072289 Msa1029580:intron 30.0%
TGTGTAGTGTATATAAAGCT+TGG + chr7_1:63072546-63072565 Msa1029580:intron 30.0%
GTGTAGTGTATATAAAGCTT+GGG + chr7_1:63072547-63072566 Msa1029580:intron 30.0%
ATGAAATCATAGAACTTTGC+CGG + chr7_1:63072731-63072750 Msa1029580:intron 30.0%
TGAATTGCGTAGAAAATGTT+TGG + chr7_1:63073192-63073211 Msa1029580:intron 30.0%
AAGCTACTATAAATCATAGG+AGG + chr7_1:63073527-63073546 Msa1029580:intron 30.0%
AGCTACTATAAATCATAGGA+GGG + chr7_1:63073528-63073547 Msa1029580:intron 30.0%
TGTTAGAATTCTTGCGATTA+CGG - chr7_1:63073680-63073699 None:intergenic 30.0%
ATTCTAACATGACCACAATT+TGG + chr7_1:63073691-63073710 Msa1029580:intron 30.0%
TATACAAAGGTTCCAAATTG+TGG - chr7_1:63073706-63073725 None:intergenic 30.0%
ATTGTGGTCATGTTATACAA+AGG - chr7_1:63073719-63073738 None:intergenic 30.0%
TGTATAACATGACCACAATT+TGG + chr7_1:63073720-63073739 Msa1029580:intron 30.0%
TATACAAAGGTTCCAAATTG+TGG - chr7_1:63073706-63073725 None:intergenic 30.0%
TATGATGTGAAATCACAAGA+GGG - chr7_1:63073824-63073843 None:intergenic 30.0%
TTATGATGTGAAATCACAAG+AGG - chr7_1:63073825-63073844 None:intergenic 30.0%
!! ATCAATTTGTATTTCTGGGA+GGG - chr7_1:63073854-63073873 None:intergenic 30.0%
! AAAGCATCAATTTCATCACT+CGG - chr7_1:63074073-63074092 None:intergenic 30.0%
GTATCAAAACATAGTGGTAT+TGG - chr7_1:63074194-63074213 None:intergenic 30.0%
! CTTCTGATATACAGTTTTTC+AGG + chr7_1:63074363-63074382 Msa1029580:intron 30.0%
! CTAGATGTTATCTTTTTACC+CGG - chr7_1:63074437-63074456 None:intergenic 30.0%
!!! CAAGTCATTTGGTTTTAGTT+CGG + chr7_1:63074487-63074506 Msa1029580:CDS 30.0%
! TTCCTACACATATTTTACCT+CGG - chr7_1:63074628-63074647 None:intergenic 30.0%
TAACTTAACCTTCAAGTATC+AGG - chr7_1:63074757-63074776 None:intergenic 30.0%
AAAATGACATCGTTTAAGGG+AGG - chr7_1:63069603-63069622 None:intergenic 35.0%
AAACCGTCCAATCAAAAAAC+CGG - chr7_1:63069717-63069736 None:intergenic 35.0%
AATAGATTGAACGAAGGGAA+AGG - chr7_1:63069941-63069960 None:intergenic 35.0%
CACTGAATAGATTGAACGAA+GGG - chr7_1:63069946-63069965 None:intergenic 35.0%
GAAATCACAGAGTTTCAGAT+CGG - chr7_1:63070099-63070118 None:intergenic 35.0%
ATTGTACATTCAGAGCTTCA+CGG + chr7_1:63070170-63070189 Msa1029580:CDS 35.0%
ACTCAATGTATTCTCGTGTT+TGG + chr7_1:63070532-63070551 Msa1029580:intron 35.0%
!!! TATTGTTTGCCTTGTTTTGG+GGG + chr7_1:63070645-63070664 Msa1029580:intron 35.0%
GTGAACAATCCTAAGAAATC+TGG + chr7_1:63070697-63070716 Msa1029580:intron 35.0%
AAAAACGTCTCATTCAGCAT+CGG - chr7_1:63070724-63070743 None:intergenic 35.0%
! ATGCTGAATGAGACGTTTTT+AGG + chr7_1:63070724-63070743 Msa1029580:CDS 35.0%
!! ATCACCCACTTTTCATTGTT+GGG - chr7_1:63070829-63070848 None:intergenic 35.0%
!! AATCACCCACTTTTCATTGT+TGG - chr7_1:63070830-63070849 None:intergenic 35.0%
! TGTGATGTCATTTGCAGTTA+TGG + chr7_1:63070863-63070882 Msa1029580:intron 35.0%
TGGATATCTGACTAATACGA+AGG + chr7_1:63070883-63070902 Msa1029580:CDS 35.0%
! GAAATTTATCTTGGTGACCA+CGG + chr7_1:63070907-63070926 Msa1029580:CDS 35.0%
! TTTTCATTAGCCCAATTTCC+TGG + chr7_1:63071026-63071045 Msa1029580:intron 35.0%
AACTTCCATTCAAGAAGACA+AGG - chr7_1:63071078-63071097 None:intergenic 35.0%
CTTGAATGGAAGTTTATGAC+TGG + chr7_1:63071084-63071103 Msa1029580:intron 35.0%
TACAGATTAAGCTCAACACA+CGG - chr7_1:63071187-63071206 None:intergenic 35.0%
AGTAAACACAACCACACATT+AGG - chr7_1:63071299-63071318 None:intergenic 35.0%
TAATGTGTGGTTGTGTTTAC+TGG + chr7_1:63071298-63071317 Msa1029580:intron 35.0%
GTGTATTAGAAGACCTTCAA+TGG + chr7_1:63071320-63071339 Msa1029580:intron 35.0%
GCTATAGTACTGTTACATAG+CGG + chr7_1:63071558-63071577 Msa1029580:intron 35.0%
! CATCATTGAATAATAGTGGG+AGG + chr7_1:63071620-63071639 Msa1029580:intron 35.0%
CCAAGAATGTACAATGGAAA+TGG - chr7_1:63071715-63071734 None:intergenic 35.0%
CCATTTCCATTGTACATTCT+TGG + chr7_1:63071712-63071731 Msa1029580:intron 35.0%
AGGTGGAAATAGATCAGATT+TGG - chr7_1:63071806-63071825 None:intergenic 35.0%
CATTAACTGCTTATGCTAGA+AGG - chr7_1:63071826-63071845 None:intergenic 35.0%
CTTCTAGCATAAGCAGTTAA+TGG + chr7_1:63071824-63071843 Msa1029580:intron 35.0%
!! TATCGACTTTAGTAACTGTG+AGG - chr7_1:63071921-63071940 None:intergenic 35.0%
ATTCAAATCACATGCACATG+TGG + chr7_1:63072018-63072037 Msa1029580:intron 35.0%
TAGTATTAGGAAGGTAAAGG+AGG + chr7_1:63072052-63072071 Msa1029580:intron 35.0%
TAGAATGTAAAGTGGGAGAA+GGG + chr7_1:63072084-63072103 Msa1029580:intron 35.0%
GTGGAGAAGTAAGGAAAAAT+TGG + chr7_1:63072110-63072129 Msa1029580:intron 35.0%
GGAGAAGTAAGGAAAAATTG+GGG + chr7_1:63072112-63072131 Msa1029580:intron 35.0%
GAGAAGTAAGGAAAAATTGG+GGG + chr7_1:63072113-63072132 Msa1029580:intron 35.0%
TTTAACACCTTCAGTGTGTT+GGG + chr7_1:63072489-63072508 Msa1029580:intron 35.0%
!! TCTTACAAGCCGGTTTTTAA+CGG + chr7_1:63072579-63072598 Msa1029580:intron 35.0%
CTAACTCATCCGTTAAAAAC+CGG - chr7_1:63072591-63072610 None:intergenic 35.0%
TTCAGAATTATAGTCTGCAG+TGG + chr7_1:63072642-63072661 Msa1029580:intron 35.0%
TTTCATTCACTCTATCATCG+TGG - chr7_1:63072717-63072736 None:intergenic 35.0%
TGAAATCATAGAACTTTGCC+GGG + chr7_1:63072732-63072751 Msa1029580:intron 35.0%
TGCACTACAACAATAGTGTT+TGG - chr7_1:63072816-63072835 None:intergenic 35.0%
! AAGTTGGCTTAATGTTGTGA+AGG + chr7_1:63072997-63073016 Msa1029580:intron 35.0%
GAAACAAATGGGACTTGTAT+GGG + chr7_1:63073133-63073152 Msa1029580:intron 35.0%
! GGACTTGTATGGGAAAATTT+TGG + chr7_1:63073143-63073162 Msa1029580:intron 35.0%
!! TGTATGGGAAAATTTTGGTG+AGG + chr7_1:63073148-63073167 Msa1029580:intron 35.0%
! TTTTGGTGAGGTAATTTTGC+AGG + chr7_1:63073160-63073179 Msa1029580:intron 35.0%
ATTCACATCGCAACATGTTA+AGG + chr7_1:63073561-63073580 Msa1029580:intron 35.0%
GTTAGAATTCTTGCGATTAC+GGG - chr7_1:63073679-63073698 None:intergenic 35.0%
! TGTCACTCAAAAAAGCATAC+TGG - chr7_1:63073764-63073783 None:intergenic 35.0%
! AAACTGCATTCTTTGGTGTA+CGG + chr7_1:63073783-63073802 Msa1029580:intron 35.0%
!! CATCAATTTGTATTTCTGGG+AGG - chr7_1:63073855-63073874 None:intergenic 35.0%
GAACAAAGTGAAACAAAGCA+AGG - chr7_1:63073904-63073923 None:intergenic 35.0%
TTGTTTCACTTTGTTCTCTC+TGG + chr7_1:63073908-63073927 Msa1029580:intron 35.0%
AAGCATCAATTTCATCACTC+GGG - chr7_1:63074072-63074091 None:intergenic 35.0%
AGAACGGTATCAAAACATAG+TGG - chr7_1:63074200-63074219 None:intergenic 35.0%
CCAGAGTTATTATGTGACAA+AGG - chr7_1:63074293-63074312 None:intergenic 35.0%
CCTTTGTCACATAATAACTC+TGG + chr7_1:63074290-63074309 Msa1029580:intron 35.0%
CTGTATATCAGAAGTTAGCA+TGG - chr7_1:63074357-63074376 None:intergenic 35.0%
GCTGCATGAAAATCTAATAC+CGG + chr7_1:63074509-63074528 Msa1029580:exon 35.0%
CAAGAGTAATTAAAACGGGC+CGG - chr7_1:63069801-63069820 None:intergenic 40.0%
GCACTGAATAGATTGAACGA+AGG - chr7_1:63069947-63069966 None:intergenic 40.0%
TTCAATCTATTCAGTGCGTG+CGG + chr7_1:63069950-63069969 Msa1029580:five_prime_UTR 40.0%
AAAATGACGAAGTGGAGAAC+GGG - chr7_1:63070071-63070090 None:intergenic 40.0%
GAAAATGACGAAGTGGAGAA+CGG - chr7_1:63070072-63070091 None:intergenic 40.0%
! ATGGATTGTTCTGCAGCAAT+CGG - chr7_1:63070152-63070171 None:intergenic 40.0%
!! GTGAAGCTCTGAATGTACAA+TGG - chr7_1:63070171-63070190 None:intergenic 40.0%
CCAATAAGCTATGTAGCACA+CGG - chr7_1:63070593-63070612 None:intergenic 40.0%
!!! ATTGTTTGCCTTGTTTTGGG+GGG + chr7_1:63070646-63070665 Msa1029580:intron 40.0%
ATCTTTAACATCCAGATCCG+TGG - chr7_1:63070927-63070946 None:intergenic 40.0%
GTGGAGTAAATCCTAATGTG+TGG + chr7_1:63071285-63071304 Msa1029580:intron 40.0%
GAAGACCTTCAATGGAAGAA+TGG + chr7_1:63071328-63071347 Msa1029580:intron 40.0%
! ACGATAGTGCTATTGCATAG+CGG + chr7_1:63071461-63071480 Msa1029580:intron 40.0%
TTGTGAAATAGTGGCTATCG+CGG + chr7_1:63071534-63071553 Msa1029580:intron 40.0%
TGCAGGTCTCTTAAATACCT+AGG + chr7_1:63071674-63071693 Msa1029580:intron 40.0%
GCAGGTCTCTTAAATACCTA+GGG + chr7_1:63071675-63071694 Msa1029580:intron 40.0%
CGAATGCCAAGAATGTACAA+TGG - chr7_1:63071721-63071740 None:intergenic 40.0%
TAACTGCTTATGCTAGAAGG+TGG - chr7_1:63071823-63071842 None:intergenic 40.0%
TGGTGACACGATGTTAACAT+TGG + chr7_1:63071844-63071863 Msa1029580:intron 40.0%
GGTGACACGATGTTAACATT+GGG + chr7_1:63071845-63071864 Msa1029580:intron 40.0%
GAAATACAAAGCGAAGAAGG+CGG + chr7_1:63071947-63071966 Msa1029580:intron 40.0%
GTGACAATGAGGGATATTCA+AGG + chr7_1:63071973-63071992 Msa1029580:intron 40.0%
ACAATGAGGGATATTCAAGG+AGG + chr7_1:63071976-63071995 Msa1029580:intron 40.0%
CAATGAGGGATATTCAAGGA+GGG + chr7_1:63071977-63071996 Msa1029580:intron 40.0%
! ATTCAAGGAGGGAGCATATT+AGG + chr7_1:63071988-63072007 Msa1029580:intron 40.0%
! TTCAAGGAGGGAGCATATTA+GGG + chr7_1:63071989-63072008 Msa1029580:intron 40.0%
GGGTAGTATTAGGAAGGTAA+AGG + chr7_1:63072049-63072068 Msa1029580:intron 40.0%
AGTAGGGGTAGAATGTAAAG+TGG + chr7_1:63072076-63072095 Msa1029580:intron 40.0%
GTAGGGGTAGAATGTAAAGT+GGG + chr7_1:63072077-63072096 Msa1029580:intron 40.0%
GTAGAATGTAAAGTGGGAGA+AGG + chr7_1:63072083-63072102 Msa1029580:intron 40.0%
AGGAAAAATTGGGGGAAGTT+TGG + chr7_1:63072121-63072140 Msa1029580:intron 40.0%
GGAAAAATTGGGGGAAGTTT+GGG + chr7_1:63072122-63072141 Msa1029580:intron 40.0%
TCTCAGATTCAGAGCAATTC+TGG + chr7_1:63072371-63072390 Msa1029580:intron 40.0%
!! CAACACACTGAAGGTGTTAA+AGG - chr7_1:63072490-63072509 None:intergenic 40.0%
CTTTAACACCTTCAGTGTGT+TGG + chr7_1:63072488-63072507 Msa1029580:intron 40.0%
!! AAAACCGGCTTGTAAGATGA+GGG - chr7_1:63072576-63072595 None:intergenic 40.0%
!! AAAAACCGGCTTGTAAGATG+AGG - chr7_1:63072577-63072596 None:intergenic 40.0%
!! CGGTTTTTAACGGATGAGTT+AGG + chr7_1:63072589-63072608 Msa1029580:intron 40.0%
! TAGTGTTTGGTGATTTGCAG+TGG - chr7_1:63072803-63072822 None:intergenic 40.0%
AGCAAACAAGACAAGCTTTG+AGG - chr7_1:63072847-63072866 None:intergenic 40.0%
ACACAAATCAACCACAGAAG+TGG - chr7_1:63072910-63072929 None:intergenic 40.0%
! TGATTTGTGTTCTGCGTCAA+TGG + chr7_1:63072920-63072939 Msa1029580:intron 40.0%
GATTTGTGTTCTGCGTCAAT+GGG + chr7_1:63072921-63072940 Msa1029580:intron 40.0%
AACTACCAGTGAGTGTTAGA+TGG + chr7_1:63072974-63072993 Msa1029580:intron 40.0%
AACTTCCATCTAACACTCAC+TGG - chr7_1:63072982-63073001 None:intergenic 40.0%
AGTGAGTGTTAGATGGAAGT+TGG + chr7_1:63072981-63073000 Msa1029580:intron 40.0%
AATCCTGAAGGGGAAACAAA+TGG + chr7_1:63073121-63073140 Msa1029580:intron 40.0%
ATCCTGAAGGGGAAACAAAT+GGG + chr7_1:63073122-63073141 Msa1029580:intron 40.0%
GGAAACAAATGGGACTTGTA+TGG + chr7_1:63073132-63073151 Msa1029580:intron 40.0%
GTAAAGAGGCAATATATGCG+TGG + chr7_1:63073242-63073261 Msa1029580:intron 40.0%
! TGATAATGCTTGAGAACGGA+TGG - chr7_1:63073314-63073333 None:intergenic 40.0%
GTATTGTGAATGTTGCGATG+TGG - chr7_1:63073657-63073676 None:intergenic 40.0%
GAGTGACAAACTGCATTCTT+TGG + chr7_1:63073776-63073795 Msa1029580:intron 40.0%
! AGAAGAAAAAGCATGCCTGT+GGG - chr7_1:63073953-63073972 None:intergenic 40.0%
! TAGAAGAAAAAGCATGCCTG+TGG - chr7_1:63073954-63073973 None:intergenic 40.0%
!! GCTTTTGTTTCTCACATCAG+TGG + chr7_1:63074088-63074107 Msa1029580:intron 40.0%
TTCAAATCCATTCCATGTGC+CGG + chr7_1:63074415-63074434 Msa1029580:CDS 40.0%
! TTATCTTTTTACCCGGCACA+TGG - chr7_1:63074430-63074449 None:intergenic 40.0%
AGCACAATCGTCAAGTCATT+TGG + chr7_1:63074476-63074495 Msa1029580:CDS 40.0%
TCGGTGAAATTCCATTCCTA+AGG - chr7_1:63074609-63074628 None:intergenic 40.0%
TTAGGAATGGAATTTCACCG+AGG + chr7_1:63074608-63074627 Msa1029580:intron 40.0%
CACCGAGGTAAAATATGTGT+AGG + chr7_1:63074623-63074642 Msa1029580:three_prime_UTR 40.0%
TGAAAAACCGGGAAAACCGT+CGG - chr7_1:63069682-63069701 None:intergenic 45.0%
!!! CTGTCCACCGGTTTTTTGAT+TGG + chr7_1:63069707-63069726 Msa1029580:five_prime_UTR 45.0%
!!! CCACCGGTTTTTTGATTGGA+CGG + chr7_1:63069711-63069730 Msa1029580:five_prime_UTR 45.0%
!!! GGACGGTTTTTGGCTTAGAT+CGG + chr7_1:63069728-63069747 Msa1029580:five_prime_UTR 45.0%
GATCGGACCAATAACAGATC+CGG + chr7_1:63069745-63069764 Msa1029580:five_prime_UTR 45.0%
ACGTGAACCGGATCTGTTAT+TGG - chr7_1:63069755-63069774 None:intergenic 45.0%
TCAATCTATTCAGTGCGTGC+GGG + chr7_1:63069951-63069970 Msa1029580:five_prime_UTR 45.0%
CGGAGATGAAAATGACGAAG+TGG - chr7_1:63070079-63070098 None:intergenic 45.0%
GACACTTCTAATCGAAGACG+TGG - chr7_1:63070571-63070590 None:intergenic 45.0%
CCGTGTGCTACATAGCTTAT+TGG + chr7_1:63070590-63070609 Msa1029580:intron 45.0%
TCAGATATCCCCCCAAAACA+AGG - chr7_1:63070657-63070676 None:intergenic 45.0%
!! AGCATCGGTCCAGATTTCTT+AGG - chr7_1:63070709-63070728 None:intergenic 45.0%
GTGAGTGCATTTGTAGCATG+TGG + chr7_1:63070777-63070796 Msa1029580:intron 45.0%
!! CAGCTGTTTGGTTTGACGAT+AGG - chr7_1:63071266-63071285 None:intergenic 45.0%
ATCGTCAAACCAAACAGCTG+TGG + chr7_1:63071266-63071285 Msa1029580:intron 45.0%
GGATTTACTCCACAGCTGTT+TGG - chr7_1:63071278-63071297 None:intergenic 45.0%
AAGGCGGTTAGTGACAATGA+GGG + chr7_1:63071963-63071982 Msa1029580:intron 45.0%
GTGGATGGGTAGTATTAGGA+AGG + chr7_1:63072043-63072062 Msa1029580:intron 45.0%
CTAGAGGCGAACTGCAATAA+AGG - chr7_1:63072430-63072449 None:intergenic 45.0%
GGTGTTAAAGGCTGCAATGA+AGG - chr7_1:63072478-63072497 None:intergenic 45.0%
AAATCCACCCAACACACTGA+AGG - chr7_1:63072499-63072518 None:intergenic 45.0%
GACCTATCTCTAAGCAGTGT+GGG - chr7_1:63072525-63072544 None:intergenic 45.0%
TGACCTATCTCTAAGCAGTG+TGG - chr7_1:63072526-63072545 None:intergenic 45.0%
! ATAGTCTGCAGTGGTTGATG+TGG + chr7_1:63072651-63072670 Msa1029580:intron 45.0%
ATGTGGCCGCTAAAAGTTAG+TGG + chr7_1:63072668-63072687 Msa1029580:intron 45.0%
! CGCTGACCACTAACTTTTAG+CGG - chr7_1:63072677-63072696 None:intergenic 45.0%
CGCTAAAAGTTAGTGGTCAG+CGG + chr7_1:63072675-63072694 Msa1029580:intron 45.0%
! TGTTTGGTGATTTGCAGTGG+TGG - chr7_1:63072800-63072819 None:intergenic 45.0%
! AACCAAAGATTTGGAGCCGT+CGG - chr7_1:63072882-63072901 None:intergenic 45.0%
GTGGCTGAGAACCAAAGATT+TGG - chr7_1:63072891-63072910 None:intergenic 45.0%
GTGAAGGCAAGAAGTTGTGA+CGG + chr7_1:63073013-63073032 Msa1029580:intron 45.0%
GTTGCGATGTGGATAGCAAA+CGG - chr7_1:63073646-63073665 None:intergenic 45.0%
TCAAATCCATTCCATGTGCC+GGG + chr7_1:63074416-63074435 Msa1029580:CDS 45.0%
! TTTTTACCCGGCACATGGAA+TGG - chr7_1:63074425-63074444 None:intergenic 45.0%
TCAAAGGATCACATCAGCAC+CGG - chr7_1:63074531-63074550 None:intergenic 45.0%
!! AAATCATAATTATTTATTAT+TGG + chr7_1:63071223-63071242 Msa1029580:intron 5.0%
!! AATCATAATTATTTATTATT+GGG + chr7_1:63071224-63071243 Msa1029580:intron 5.0%
!! TTATTATAAATCATTAATTA+AGG + chr7_1:63073431-63073450 Msa1029580:intron 5.0%
ACTTAAACCGCACGAACCGA+CGG + chr7_1:63069663-63069682 Msa1029580:five_prime_UTR 50.0%
! CGGTTTTCCCGGTTTTTCAC+CGG + chr7_1:63069683-63069702 Msa1029580:five_prime_UTR 50.0%
TGGACAGACCGGTGAAAAAC+CGG - chr7_1:63069694-63069713 None:intergenic 50.0%
! TTTTTCACCGGTCTGTCCAC+CGG + chr7_1:63069695-63069714 Msa1029580:five_prime_UTR 50.0%
CAAAAAACCGGTGGACAGAC+CGG - chr7_1:63069705-63069724 None:intergenic 50.0%
CCGTCCAATCAAAAAACCGG+TGG - chr7_1:63069714-63069733 None:intergenic 50.0%
GATCCGGTTCACGTTTGAAC+CGG + chr7_1:63069761-63069780 Msa1029580:five_prime_UTR 50.0%
! CAACCGGTTCAAACGTGAAC+CGG - chr7_1:63069767-63069786 None:intergenic 50.0%
CACGTTTGAACCGGTTGAAC+CGG + chr7_1:63069770-63069789 Msa1029580:five_prime_UTR 50.0%
TTTGAACCGGTTGAACCGGT+CGG + chr7_1:63069774-63069793 Msa1029580:five_prime_UTR 50.0%
ACGCAGACGATCATCTTCAC+CGG - chr7_1:63070011-63070030 None:intergenic 50.0%
AGTGGAGAACGGGAAAGTGA+CGG - chr7_1:63070061-63070080 None:intergenic 50.0%
GTACATTCAGAGCTTCACGG+AGG + chr7_1:63070173-63070192 Msa1029580:CDS 50.0%
ATGTCGTAGACGAACGAGGT+AGG + chr7_1:63070241-63070260 Msa1029580:intron 50.0%
GCTGCAAATGGTCGAGATCT+TGG + chr7_1:63070372-63070391 Msa1029580:intron 50.0%
TCTCTTACCGTTGGGCTATG+AGG + chr7_1:63070451-63070470 Msa1029580:intron 50.0%
!! TCGTGTTTGGTGTCAGACAC+CGG + chr7_1:63070545-63070564 Msa1029580:intron 50.0%
CTTCTAATCGAAGACGTGGC+CGG - chr7_1:63070567-63070586 None:intergenic 50.0%
! TATCTTGGTGACCACGGATC+TGG + chr7_1:63070913-63070932 Msa1029580:CDS 50.0%
! GTGAAATTGGGAGAGAGTGC+AGG + chr7_1:63071657-63071676 Msa1029580:intron 50.0%
! GGGTAACTTTTCAGCACCCT+AGG - chr7_1:63071694-63071713 None:intergenic 50.0%
GAAGGCGGTTAGTGACAATG+AGG + chr7_1:63071962-63071981 Msa1029580:intron 50.0%
ATCACATGCACATGTGGCAG+TGG + chr7_1:63072024-63072043 Msa1029580:intron 50.0%
ATGCACATGTGGCAGTGGAT+GGG + chr7_1:63072029-63072048 Msa1029580:intron 50.0%
GGCAGTGGATGGGTAGTATT+AGG + chr7_1:63072039-63072058 Msa1029580:intron 50.0%
AGGAAGGTAAAGGAGGCAGT+AGG + chr7_1:63072059-63072078 Msa1029580:intron 50.0%
GGAAGGTAAAGGAGGCAGTA+GGG + chr7_1:63072060-63072079 Msa1029580:intron 50.0%
GAAGGTAAAGGAGGCAGTAG+GGG + chr7_1:63072061-63072080 Msa1029580:intron 50.0%
TAAAGTGGGAGAAGGGAGAG+TGG + chr7_1:63072091-63072110 Msa1029580:intron 50.0%
GAAGGGAGAGTGGAGAAGTA+AGG + chr7_1:63072101-63072120 Msa1029580:intron 50.0%
TTGGGGGAAGTTTGGGAAAG+AGG + chr7_1:63072129-63072148 Msa1029580:intron 50.0%
GCTATCAGAAGACGTAGCAG+TGG - chr7_1:63072217-63072236 None:intergenic 50.0%
AGCCACCTAATGGTGGCATT+TGG + chr7_1:63072448-63072467 Msa1029580:intron 50.0%
GCCACCTAATGGTGGCATTT+GGG + chr7_1:63072449-63072468 Msa1029580:intron 50.0%
ACCCAAATGCCACCATTAGG+TGG - chr7_1:63072453-63072472 None:intergenic 50.0%
GCAACCCAAATGCCACCATT+AGG - chr7_1:63072456-63072475 None:intergenic 50.0%
AACACCTTCAGTGTGTTGGG+TGG + chr7_1:63072492-63072511 Msa1029580:intron 50.0%
CTCCCACACTGCTTAGAGAT+AGG + chr7_1:63072520-63072539 Msa1029580:intron 50.0%
TCATAGAACTTTGCCGGGAC+AGG + chr7_1:63072737-63072756 Msa1029580:intron 50.0%
! TTGGTTCTCAGCCACTTCTG+TGG + chr7_1:63072896-63072915 Msa1029580:intron 50.0%
TTGTGTTCTGCGTCAATGGG+TGG + chr7_1:63072924-63072943 Msa1029580:intron 50.0%
AAGGCAAGAAGTTGTGACGG+AGG + chr7_1:63073016-63073035 Msa1029580:intron 50.0%
! AGGCAAGAAGTTGTGACGGA+GGG + chr7_1:63073017-63073036 Msa1029580:intron 50.0%
! AGAAGTTGTGACGGAGGGAA+AGG + chr7_1:63073022-63073041 Msa1029580:intron 50.0%
AGGCAAGAGAGGTGAGGAAA+AGG + chr7_1:63073042-63073061 Msa1029580:intron 50.0%
GGCAAGAGAGGTGAGGAAAA+GGG + chr7_1:63073043-63073062 Msa1029580:intron 50.0%
GTCCCATTTGTTTCCCCTTC+AGG - chr7_1:63073127-63073146 None:intergenic 50.0%
CACTCGGGAAAATGACAGCA+GGG - chr7_1:63074057-63074076 None:intergenic 50.0%
TCACTCGGGAAAATGACAGC+AGG - chr7_1:63074058-63074077 None:intergenic 50.0%
AATGGGGGTTTGCACTAGAG+TGG + chr7_1:63074803-63074822 Msa1029580:three_prime_UTR 50.0%
TACTCGATGCATTGCTGTCC+TGG + chr7_1:63074837-63074856 Msa1029580:three_prime_UTR 50.0%
GATGCATTGCTGTCCTGGAA+TGG + chr7_1:63074842-63074861 Msa1029580:three_prime_UTR 50.0%
GGACAGACCGGTGAAAAACC+GGG - chr7_1:63069693-63069712 None:intergenic 55.0%
!! CGAAGTGTCGAAGGTCTACG+TGG - chr7_1:63069988-63070007 None:intergenic 55.0%
GTAGACCTTCGACACTTCGC+CGG + chr7_1:63069989-63070008 Msa1029580:five_prime_UTR 55.0%
ACTCACCTGGTGACCAACGA+CGG - chr7_1:63070036-63070055 None:intergenic 55.0%
! GAAAGTGACGGAGACTCACC+TGG - chr7_1:63070049-63070068 None:intergenic 55.0%
CTACGACATCGAGCGAGCAA+TGG - chr7_1:63070230-63070249 None:intergenic 55.0%
CTCGATGTCGTAGACGAACG+AGG + chr7_1:63070237-63070256 Msa1029580:CDS 55.0%
GTTCGTGCCTCATAGCCCAA+CGG - chr7_1:63070461-63070480 None:intergenic 55.0%
CACGAACAGTGACACGACAC+CGG + chr7_1:63070474-63070493 Msa1029580:intron 55.0%
CATGCACATGTGGCAGTGGA+TGG + chr7_1:63072028-63072047 Msa1029580:intron 55.0%
GTTCGCCTCTAGCCACCTAA+TGG + chr7_1:63072438-63072457 Msa1029580:intron 55.0%
TGCCACCATTAGGTGGCTAG+AGG - chr7_1:63072446-63072465 None:intergenic 55.0%
GCAGCCCTCATCTTACAAGC+CGG + chr7_1:63072569-63072588 Msa1029580:intron 55.0%
TAGAACTTTGCCGGGACAGG+TGG + chr7_1:63072740-63072759 Msa1029580:intron 55.0%
AGACACAACACCACCTGTCC+CGG - chr7_1:63072753-63072772 None:intergenic 55.0%
TGCTGTTCATGCTCAGCCGA+CGG + chr7_1:63072863-63072882 Msa1029580:intron 55.0%
AGCCGACGGCTCCAAATCTT+TGG + chr7_1:63072877-63072896 Msa1029580:intron 55.0%
AGGGAAAGGCAAGAGAGGTG+AGG + chr7_1:63073036-63073055 Msa1029580:intron 55.0%
!! GGGAGTGTCCATGACTGTGA+TGG + chr7_1:63073063-63073082 Msa1029580:intron 55.0%
!! GGGAAAACCGTCGGTTCGTG+CGG - chr7_1:63069673-63069692 None:intergenic 60.0%
! GCACGAACCGACGGTTTTCC+CGG + chr7_1:63069672-63069691 Msa1029580:five_prime_UTR 60.0%
TTAAAACGGGCCGGACCGAC+CGG - chr7_1:63069792-63069811 None:intergenic 60.0%
!! CTTCACCGGCGAAGTGTCGA+AGG - chr7_1:63069997-63070016 None:intergenic 60.0%
GCGAGCAATGGACGATGTGG+TGG - chr7_1:63070218-63070237 None:intergenic 60.0%
CGAGCGAGCAATGGACGATG+TGG - chr7_1:63070221-63070240 None:intergenic 60.0%
CGCCTCTAGCCACCTAATGG+TGG + chr7_1:63072441-63072460 Msa1029580:intron 60.0%
TCTGCGTCAATGGGTGGCTG+TGG + chr7_1:63072930-63072949 Msa1029580:intron 60.0%
GTCAATGGGTGGCTGTGGTG+TGG + chr7_1:63072935-63072954 Msa1029580:intron 60.0%
GACGGAGGGAAAGGCAAGAG+AGG + chr7_1:63073031-63073050 Msa1029580:intron 60.0%
ACCGGTTGAACCGGTCGGTC+CGG + chr7_1:63069779-63069798 Msa1029580:five_prime_UTR 65.0%
ATCGTCTGCGTCGCCGTCGT+TGG + chr7_1:63070020-63070039 Msa1029580:CDS 65.0%
! GCCGGACCGACCGGTTCAAC+CGG - chr7_1:63069783-63069802 None:intergenic 70.0%
CGTCGCCGTCGTTGGTCACC+AGG + chr7_1:63070028-63070047 Msa1029580:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 63069590 63074867 63069590 ID=Msa1029580;Name=Msa1029580
chr7_1 mRNA 63069590 63074867 63069590 ID=Msa1029580-mRNA-1;Parent=Msa1029580;Name=Msa1029580-mRNA-1;_AED=0.03;_eAED=0.03;_QI=427|1|1|1|0.6|0.66|6|330|143
chr7_1 exon 63069590 63070049 63069590 ID=Msa1029580-mRNA-1:exon:13589;Parent=Msa1029580-mRNA-1
chr7_1 exon 63070162 63070258 63070162 ID=Msa1029580-mRNA-1:exon:13590;Parent=Msa1029580-mRNA-1
chr7_1 exon 63070698 63070776 63070698 ID=Msa1029580-mRNA-1:exon:13591;Parent=Msa1029580-mRNA-1
chr7_1 exon 63070880 63070961 63070880 ID=Msa1029580-mRNA-1:exon:13592;Parent=Msa1029580-mRNA-1
chr7_1 exon 63074377 63074596 63074377 ID=Msa1029580-mRNA-1:exon:13593;Parent=Msa1029580-mRNA-1
chr7_1 exon 63074617 63074867 63074617 ID=Msa1029580-mRNA-1:exon:13594;Parent=Msa1029580-mRNA-1
chr7_1 five_prime_UTR 63069590 63070016 63069590 ID=Msa1029580-mRNA-1:five_prime_utr;Parent=Msa1029580-mRNA-1
chr7_1 CDS 63070017 63070049 63070017 ID=Msa1029580-mRNA-1:cds;Parent=Msa1029580-mRNA-1
chr7_1 CDS 63070162 63070258 63070162 ID=Msa1029580-mRNA-1:cds;Parent=Msa1029580-mRNA-1
chr7_1 CDS 63070698 63070776 63070698 ID=Msa1029580-mRNA-1:cds;Parent=Msa1029580-mRNA-1
chr7_1 CDS 63070880 63070961 63070880 ID=Msa1029580-mRNA-1:cds;Parent=Msa1029580-mRNA-1
chr7_1 CDS 63074377 63074517 63074377 ID=Msa1029580-mRNA-1:cds;Parent=Msa1029580-mRNA-1
chr7_1 three_prime_UTR 63074518 63074596 63074518 ID=Msa1029580-mRNA-1:three_prime_utr;Parent=Msa1029580-mRNA-1
chr7_1 three_prime_UTR 63074617 63074867 63074617 ID=Msa1029580-mRNA-1:three_prime_utr;Parent=Msa1029580-mRNA-1
Gene Sequence

>Msa1029580

ATGATCGTCTGCGTCGCCGTCGTTGGTCACCAGAACAATCCATTGTACATTCAGAGCTTCACGGAGGCTGATGATGCTCTCAAGCTCCACCACATCGTCCATTGCTCGCTCGATGTCGTAGACGAACGAGTGAACAATCCTAAGAAATCTGGACCGATGCTGAATGAGACGTTTTTAGGATTGCTTTATCCAATTGAAAATTACAAAGTTTATGGATATCTGACTAATACGAAGGTGAAATTTATCTTGGTGACCACGGATCTGGATGTTAAAGATGCAGATGTGAGAAATTTTTTCAGGAGATTTCATGCTGCATATGTAGATGCAGTTTCAAATCCATTCCATGTGCCGGGTAAAAAGATAACATCTAGAACATTTGCAGAAAGAGTGAGCACAATCGTCAAGTCATTTGGTTTTAGTTCGGCTGCATGA
Protein sequence

>Msa1029580

MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPMLNETFLGLLYPIENYKVYGYLTNTKVKFILVTTDLDVKDADVRNFFRRFHAAYVDAVSNPFHVPGKKITSRTFAERVSTIVKSFGFSSAA*