Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0592090 | PNX64532.1 | 89.362 | 47 | 5 | 0 | 1 | 47 | 1 | 47 | 4.00e-20 | 84.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0592090 | Msa1029580 | 0.819297 | 1.250530e-52 | -8.615850e-47 |
| Msa0592090 | Msa1102850 | -0.819836 | 9.420346e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 29 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGGAATGAATTACCTAAT+TGG | 0.305618 | 4_2:-17201748 | None:intergenic |
| GTAGCTCCCCGTTCATTATC+AGG | 0.331370 | 4_2:+17204393 | Msa0592090:three_prime_UTR |
| GAGAGACAATTTGTTTCATC+TGG | 0.333858 | 4_2:+17204312 | Msa0592090:three_prime_UTR |
| AGCATGTTCTGTAATAAATT+AGG | 0.350546 | 4_2:+17204251 | Msa0592090:three_prime_UTR |
| AACCTCCGCCACCACCAATT+AGG | 0.362228 | 4_2:+17201734 | Msa0592090:CDS |
| TTGAAATATTATGGTTGTCT+TGG | 0.399021 | 4_2:+17204290 | Msa0592090:three_prime_UTR |
| TTCAGCTATGGCGTTCTTGA+AGG | 0.409944 | 4_2:+17201605 | Msa0592090:exon |
| CATTTCTCCTGATAATGAAC+GGG | 0.432620 | 4_2:-17204400 | None:intergenic |
| CGGTGTTCTTCCAGCTGCTA+TGG | 0.443986 | 4_2:+17201668 | Msa0592090:CDS |
| TACCTAATTGGTGGTGGCGG+AGG | 0.454004 | 4_2:-17201736 | None:intergenic |
| TCTTGCCAACGCTGCCACTT+TGG | 0.464149 | 4_2:-17201643 | None:intergenic |
| TTCATTATCAGGAGAAATGC+TGG | 0.483321 | 4_2:+17204404 | Msa0592090:three_prime_UTR |
| GTGGCAGCGTTGGCAAGATT+CGG | 0.493338 | 4_2:+17201648 | Msa0592090:CDS |
| TCTGGTGGAACAGGTGCATG+AGG | 0.519587 | 4_2:+17204192 | Msa0592090:intron |
| AGAGCAGCCACCATAGCAGC+TGG | 0.525098 | 4_2:-17201678 | None:intergenic |
| AATGCAAGTTAAGATTCTGT+TGG | 0.540914 | 4_2:-17201448 | None:intergenic |
| TCAGCTATGGCGTTCTTGAA+GGG | 0.546115 | 4_2:+17201606 | Msa0592090:exon |
| TGTTACCAAAGTGGCAGCGT+TGG | 0.555808 | 4_2:+17201638 | Msa0592090:CDS |
| TGTTTGACCAAAATCATGCA+TGG | 0.566508 | 4_2:+17204463 | Msa0592090:three_prime_UTR |
| ATGAATTACCTAATTGGTGG+TGG | 0.567212 | 4_2:-17201742 | None:intergenic |
| CTGGTGGAACAGGTGCATGA+GGG | 0.583982 | 4_2:+17204193 | Msa0592090:intron |
| GCATTTCTCCTGATAATGAA+CGG | 0.588860 | 4_2:-17204401 | None:intergenic |
| AATTACCTAATTGGTGGTGG+CGG | 0.589184 | 4_2:-17201739 | None:intergenic |
| AGTTTGAGAAGCTTCAGCTA+TGG | 0.593274 | 4_2:+17201593 | Msa0592090:exon |
| TGTTCTTCCAGCTGCTATGG+TGG | 0.595568 | 4_2:+17201671 | Msa0592090:CDS |
| TATGGCGTTCTTGAAGGGAA+AGG | 0.621924 | 4_2:+17201611 | Msa0592090:exon |
| AAAGGCAGTTGTTACCAAAG+TGG | 0.658601 | 4_2:+17201629 | Msa0592090:CDS |
| GGAATGAATTACCTAATTGG+TGG | 0.662786 | 4_2:-17201745 | None:intergenic |
| ATTTCTCCTGATAATGAACG+GGG | 0.728295 | 4_2:-17204399 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTTGTAATG+AGG | - | chr4_2:17201492-17201511 | None:intergenic | 10.0% |
| !! | ATTCAATCTTAATAAATAAA+TGG | - | chr4_2:17203107-17203126 | None:intergenic | 10.0% |
| !!! | TTTTTGTTTTTGAAATATTA+TGG | + | chr4_2:17204281-17204300 | Msa0592090:three_prime_UTR | 10.0% |
| !! | TATTCAAAAATGAATATTGA+AGG | - | chr4_2:17201769-17201788 | None:intergenic | 15.0% |
| !! | TTAGAATGAATCATTAATTT+AGG | + | chr4_2:17201899-17201918 | Msa0592090:intron | 15.0% |
| !!! | TGTTGTTTTTTTACATATAA+TGG | + | chr4_2:17202506-17202525 | Msa0592090:intron | 15.0% |
| !! | ATGTATTCAATTCATAAATT+TGG | + | chr4_2:17202960-17202979 | Msa0592090:intron | 15.0% |
| !!! | AAATTTTCATATTATCACTT+TGG | + | chr4_2:17203044-17203063 | Msa0592090:intron | 15.0% |
| !!! | AATTTTCATATTATCACTTT+GGG | + | chr4_2:17203045-17203064 | Msa0592090:intron | 15.0% |
| !!! | ATAATTTGAGAGAATTTTTT+TGG | + | chr4_2:17203439-17203458 | Msa0592090:intron | 15.0% |
| !!! | TAATTTGAGAGAATTTTTTT+GGG | + | chr4_2:17203440-17203459 | Msa0592090:intron | 15.0% |
| !! | ATAAGACACAATTATATTAA+TGG | - | chr4_2:17204126-17204145 | None:intergenic | 15.0% |
| !!! | TGTAACACTTTTAAATATTA+AGG | + | chr4_2:17204149-17204168 | Msa0592090:intron | 15.0% |
| !!! | TTCGTTTTTTTTTAGTGTTT+CGG | + | chr4_2:17201795-17201814 | Msa0592090:intron | 20.0% |
| !!! | TTGTTAGTTTATTAAGTTCT+TGG | + | chr4_2:17201827-17201846 | Msa0592090:intron | 20.0% |
| !! | GAGAATTTATATAAGTCAAT+TGG | + | chr4_2:17201870-17201889 | Msa0592090:intron | 20.0% |
| !! | TTTGATCTGCTAAAAAATTA+AGG | + | chr4_2:17202000-17202019 | Msa0592090:intron | 20.0% |
| !! | TTGATCTGCTAAAAAATTAA+GGG | + | chr4_2:17202001-17202020 | Msa0592090:intron | 20.0% |
| !!! | TTTTTGTCGTATATGATTTT+TGG | - | chr4_2:17202165-17202184 | None:intergenic | 20.0% |
| !!! | GATTGAAGATTTAATTTTCA+AGG | + | chr4_2:17202399-17202418 | Msa0592090:intron | 20.0% |
| !! | ATTTAGTCCTTAAAATTACA+GGG | - | chr4_2:17202469-17202488 | None:intergenic | 20.0% |
| !! | TATTTAGTCCTTAAAATTAC+AGG | - | chr4_2:17202470-17202489 | None:intergenic | 20.0% |
| !! | GAAAATTAACTTTATTAGGA+TGG | - | chr4_2:17203140-17203159 | None:intergenic | 20.0% |
| !! | GATGGAAAATTAACTTTATT+AGG | - | chr4_2:17203144-17203163 | None:intergenic | 20.0% |
| !!! | ATTATCATGAAAGTACAAAT+TGG | - | chr4_2:17203196-17203215 | None:intergenic | 20.0% |
| !! | CTTTCATGATAATTGAATTT+AGG | + | chr4_2:17203203-17203222 | Msa0592090:intron | 20.0% |
| !! | TTTCTATAGTTCAAATACTA+AGG | + | chr4_2:17203307-17203326 | Msa0592090:intron | 20.0% |
| !!! | AATGACTTTTGAATAATCAT+AGG | - | chr4_2:17203359-17203378 | None:intergenic | 20.0% |
| !! | AGTATACTTTATCAGATTAT+AGG | - | chr4_2:17203764-17203783 | None:intergenic | 20.0% |
| !! | TAATTATTATCAAACCACAA+TGG | - | chr4_2:17203990-17204009 | None:intergenic | 20.0% |
| !!! | AAATAACAGTTTACTTTTTC+TGG | + | chr4_2:17204174-17204193 | Msa0592090:intron | 20.0% |
| !! | CAACATAGGAATATTTGTTA+TGG | - | chr4_2:17202200-17202219 | None:intergenic | 25.0% |
| !! | TGATTGAGGATTTTCAAATT+CGG | - | chr4_2:17202319-17202338 | None:intergenic | 25.0% |
| ! | ATTTCAAGGATTAAATTGAC+TGG | + | chr4_2:17202359-17202378 | Msa0592090:intron | 25.0% |
| !!! | TTAATTTTCAAGGTCTCTTT+TGG | + | chr4_2:17202409-17202428 | Msa0592090:intron | 25.0% |
| !! | AACAATTCCCTGTAATTTTA+AGG | + | chr4_2:17202459-17202478 | Msa0592090:intron | 25.0% |
| ! | GCAGTATGTAATTATACTAA+AGG | - | chr4_2:17202549-17202568 | None:intergenic | 25.0% |
| ! | TTGACAATGTGTTTATAAGT+GGG | + | chr4_2:17202673-17202692 | Msa0592090:intron | 25.0% |
| !!! | CTTTCTGTTTTATTTTTTCC+TGG | + | chr4_2:17202813-17202832 | Msa0592090:intron | 25.0% |
| ! | ATTTGGTTGTAAGTTGTATT+TGG | + | chr4_2:17202977-17202996 | Msa0592090:intron | 25.0% |
| ! | TTTGGTTGTAAGTTGTATTT+GGG | + | chr4_2:17202978-17202997 | Msa0592090:intron | 25.0% |
| ! | ACAACTTAAGATACATAACT+AGG | - | chr4_2:17203020-17203039 | None:intergenic | 25.0% |
| ! | TGAATTATCATGTCTCTTAA+AGG | - | chr4_2:17203235-17203254 | None:intergenic | 25.0% |
| ! | TAAGAGACATGATAATTCAT+TGG | + | chr4_2:17203236-17203255 | Msa0592090:intron | 25.0% |
| ! | TTGAATAATCATAGGTAGTA+GGG | - | chr4_2:17203351-17203370 | None:intergenic | 25.0% |
| ! | TTTGAATAATCATAGGTAGT+AGG | - | chr4_2:17203352-17203371 | None:intergenic | 25.0% |
| ! | GGTATAATACTTACTAATAG+CGG | + | chr4_2:17203926-17203945 | Msa0592090:intron | 25.0% |
| ! | AATTGTTTCCAACAAGAATA+CGG | - | chr4_2:17204035-17204054 | None:intergenic | 25.0% |
| ! | TGACTAGGAATGAAATTTAA+AGG | - | chr4_2:17204059-17204078 | None:intergenic | 25.0% |
| ! | AGCATGTTCTGTAATAAATT+AGG | + | chr4_2:17204251-17204270 | Msa0592090:three_prime_UTR | 25.0% |
| ! | TTGAAATATTATGGTTGTCT+TGG | + | chr4_2:17204290-17204309 | Msa0592090:three_prime_UTR | 25.0% |
| !! | TTTGTTTCATCTGGATTTTA+TGG | + | chr4_2:17204321-17204340 | Msa0592090:three_prime_UTR | 25.0% |
| !! | TATTTTTCCATGCATGATTT+TGG | - | chr4_2:17204473-17204492 | None:intergenic | 25.0% |
| AATGCAAGTTAAGATTCTGT+TGG | - | chr4_2:17201451-17201470 | None:intergenic | 30.0% | |
| !!! | GTTTGTTTTTGAGCGTAATT+AGG | - | chr4_2:17201717-17201736 | None:intergenic | 30.0% |
| GAAGGAATGAATTACCTAAT+TGG | - | chr4_2:17201751-17201770 | None:intergenic | 30.0% | |
| AGTTTATTAAGTTCTTGGAG+AGG | + | chr4_2:17201832-17201851 | Msa0592090:intron | 30.0% | |
| GTTTATTAAGTTCTTGGAGA+GGG | + | chr4_2:17201833-17201852 | Msa0592090:intron | 30.0% | |
| TTTATTAAGTTCTTGGAGAG+GGG | + | chr4_2:17201834-17201853 | Msa0592090:intron | 30.0% | |
| ATTTAGTATTGTCTTCGAGT+GGG | + | chr4_2:17201960-17201979 | Msa0592090:intron | 30.0% | |
| !! | TTTAAAGTTGTTCTAGAGAG+AGG | + | chr4_2:17202064-17202083 | Msa0592090:intron | 30.0% |
| GTTGTGACATGATTTAACAA+GGG | - | chr4_2:17202132-17202151 | None:intergenic | 30.0% | |
| AGTTGTGACATGATTTAACA+AGG | - | chr4_2:17202133-17202152 | None:intergenic | 30.0% | |
| !! | TTGTCGTATATGATTTTTGG+TGG | - | chr4_2:17202162-17202181 | None:intergenic | 30.0% |
| CTTGACAATGTGTTTATAAG+TGG | + | chr4_2:17202672-17202691 | Msa0592090:intron | 30.0% | |
| TGACAATGTGTTTATAAGTG+GGG | + | chr4_2:17202674-17202693 | Msa0592090:intron | 30.0% | |
| TTCATAACTCTTAGAAATCG+TGG | - | chr4_2:17202748-17202767 | None:intergenic | 30.0% | |
| TATAAATCACACATCATTCC+AGG | - | chr4_2:17202834-17202853 | None:intergenic | 30.0% | |
| GGAATGATGTGTGATTTATA+TGG | + | chr4_2:17202834-17202853 | Msa0592090:intron | 30.0% | |
| GGTTTCTGTGAATATCTATT+AGG | + | chr4_2:17202855-17202874 | Msa0592090:intron | 30.0% | |
| !! | AGGCTTTTGAATTTGTTTTC+TGG | + | chr4_2:17202875-17202894 | Msa0592090:intron | 30.0% |
| TTGGTTGTAAGTTGTATTTG+GGG | + | chr4_2:17202979-17202998 | Msa0592090:intron | 30.0% | |
| GAAACTAAAATCATGAGAGT+AGG | - | chr4_2:17203279-17203298 | None:intergenic | 30.0% | |
| TGAATAATCATAGGTAGTAG+GGG | - | chr4_2:17203350-17203369 | None:intergenic | 30.0% | |
| AAGGTTAGCAATATCTTATC+AGG | + | chr4_2:17203403-17203422 | Msa0592090:intron | 30.0% | |
| !! | TTTTGGGAATTCTTGTCTTA+TGG | + | chr4_2:17203456-17203475 | Msa0592090:intron | 30.0% |
| TAGTACGTAGTTTGAACAAA+CGG | - | chr4_2:17203511-17203530 | None:intergenic | 30.0% | |
| TTTGTTCAAACTCATCTTCA+AGG | + | chr4_2:17203562-17203581 | Msa0592090:intron | 30.0% | |
| TTGTCAACTTAATTAGTGGA+AGG | - | chr4_2:17203740-17203759 | None:intergenic | 30.0% | |
| AGGTTTGTCAACTTAATTAG+TGG | - | chr4_2:17203744-17203763 | None:intergenic | 30.0% | |
| ! | AACTTTTCTAAGCGATTGAT+GGG | - | chr4_2:17203860-17203879 | None:intergenic | 30.0% |
| GTAAGTATTATACCAAAGCA+TGG | - | chr4_2:17203920-17203939 | None:intergenic | 30.0% | |
| !!! | TAACAGTTTACTTTTTCTGG+TGG | + | chr4_2:17204177-17204196 | Msa0592090:intron | 30.0% |
| !! | TGAGGAGTGTGATTTTTGAA+TGG | - | chr4_2:17201474-17201493 | None:intergenic | 35.0% |
| !! | TGTTTTTGAGCGTAATTAGG+AGG | - | chr4_2:17201714-17201733 | None:intergenic | 35.0% |
| ATGAATTACCTAATTGGTGG+TGG | - | chr4_2:17201745-17201764 | None:intergenic | 35.0% | |
| GGAATGAATTACCTAATTGG+TGG | - | chr4_2:17201748-17201767 | None:intergenic | 35.0% | |
| CACTCGAAGACAATACTAAA+TGG | - | chr4_2:17201961-17201980 | None:intergenic | 35.0% | |
| CATTTAGTATTGTCTTCGAG+TGG | + | chr4_2:17201959-17201978 | Msa0592090:intron | 35.0% | |
| AGAGACGTAACAAACAACAT+AGG | - | chr4_2:17202214-17202233 | None:intergenic | 35.0% | |
| !! | TCGGAGATCATTTTGAAAGT+TGG | - | chr4_2:17202300-17202319 | None:intergenic | 35.0% |
| TCTACGTCTAGCTAATTTCA+AGG | + | chr4_2:17202345-17202364 | Msa0592090:intron | 35.0% | |
| ! | TACATACTGCTAGTTTGTGT+AGG | + | chr4_2:17202559-17202578 | Msa0592090:intron | 35.0% |
| ACAACAACAACTTGAGATCA+AGG | - | chr4_2:17202606-17202625 | None:intergenic | 35.0% | |
| TATTGTTAAGAGTCCCACAT+CGG | + | chr4_2:17202638-17202657 | Msa0592090:intron | 35.0% | |
| GACAATGTGTTTATAAGTGG+GGG | + | chr4_2:17202675-17202694 | Msa0592090:intron | 35.0% | |
| AACTCTTAGAAATCGTGGTT+GGG | - | chr4_2:17202743-17202762 | None:intergenic | 35.0% | |
| TAACTCTTAGAAATCGTGGT+TGG | - | chr4_2:17202744-17202763 | None:intergenic | 35.0% | |
| TGTATTTGGGGAAGAAATTG+AGG | + | chr4_2:17202991-17203010 | Msa0592090:intron | 35.0% | |
| GTATTTGGGGAAGAAATTGA+GGG | + | chr4_2:17202992-17203011 | Msa0592090:intron | 35.0% | |
| ACAGTTCTTGTATCTCAAGA+TGG | - | chr4_2:17203162-17203181 | None:intergenic | 35.0% | |
| TTGCTAACCTTATACCATAC+AGG | - | chr4_2:17203394-17203413 | None:intergenic | 35.0% | |
| ACAATCAAACGTGTGATCAA+GGG | - | chr4_2:17203612-17203631 | None:intergenic | 35.0% | |
| AACAATCAAACGTGTGATCA+AGG | - | chr4_2:17203613-17203632 | None:intergenic | 35.0% | |
| AATTGTTTGAACTTCCTGCT+TGG | + | chr4_2:17203638-17203657 | Msa0592090:intron | 35.0% | |
| TCAACTTAATTAGTGGAAGG+AGG | - | chr4_2:17203737-17203756 | None:intergenic | 35.0% | |
| ! | GAACTTTTCTAAGCGATTGA+TGG | - | chr4_2:17203861-17203880 | None:intergenic | 35.0% |
| TCGCTTAGAAAAGTTCAAGA+TGG | + | chr4_2:17203865-17203884 | Msa0592090:intron | 35.0% | |
| AGGAAACCTTATCCAATGTA+TGG | + | chr4_2:17203954-17203973 | Msa0592090:intron | 35.0% | |
| AAGAATACGGACGTGTATTT+GGG | - | chr4_2:17204022-17204041 | None:intergenic | 35.0% | |
| !!! | TTTACTTTTTCTGGTGGAAC+AGG | + | chr4_2:17204183-17204202 | Msa0592090:intron | 35.0% |
| ! | GAGAGACAATTTGTTTCATC+TGG | + | chr4_2:17204312-17204331 | Msa0592090:three_prime_UTR | 35.0% |
| ! | ATTTCTCCTGATAATGAACG+GGG | - | chr4_2:17204402-17204421 | None:intergenic | 35.0% |
| ! | CATTTCTCCTGATAATGAAC+GGG | - | chr4_2:17204403-17204422 | None:intergenic | 35.0% |
| ! | GCATTTCTCCTGATAATGAA+CGG | - | chr4_2:17204404-17204423 | None:intergenic | 35.0% |
| TTCATTATCAGGAGAAATGC+TGG | + | chr4_2:17204404-17204423 | Msa0592090:three_prime_UTR | 35.0% | |
| TGTTTGACCAAAATCATGCA+TGG | + | chr4_2:17204463-17204482 | Msa0592090:three_prime_UTR | 35.0% | |
| ! | ATCGCGTTTTTGCGTTTTGA+TGG | - | chr4_2:17201566-17201585 | None:intergenic | 40.0% |
| AGTTTGAGAAGCTTCAGCTA+TGG | + | chr4_2:17201593-17201612 | Msa0592090:exon | 40.0% | |
| AAAGGCAGTTGTTACCAAAG+TGG | + | chr4_2:17201629-17201648 | Msa0592090:CDS | 40.0% | |
| !! | AATTACCTAATTGGTGGTGG+CGG | - | chr4_2:17201742-17201761 | None:intergenic | 40.0% |
| ! | TTCGAGTGGGTTTGAACTTT+GGG | + | chr4_2:17201973-17201992 | Msa0592090:intron | 40.0% |
| TCTAGAGAGAGGACAAATTG+AGG | + | chr4_2:17202075-17202094 | Msa0592090:intron | 40.0% | |
| GACGTAGACTAATGTGATTG+AGG | - | chr4_2:17202333-17202352 | None:intergenic | 40.0% | |
| ! | TACTGCTAGTTTGTGTAGGT+AGG | + | chr4_2:17202563-17202582 | Msa0592090:intron | 40.0% |
| AGAGTAGGCTTAAACATTCG+AGG | - | chr4_2:17203264-17203283 | None:intergenic | 40.0% | |
| TAATCATAGGTAGTAGGGGA+AGG | - | chr4_2:17203346-17203365 | None:intergenic | 40.0% | |
| TTCAATAAGTAGCGCCTGTA+TGG | + | chr4_2:17203377-17203396 | Msa0592090:intron | 40.0% | |
| CAAACTACGTACTATAGCTC+TGG | + | chr4_2:17203517-17203536 | Msa0592090:intron | 40.0% | |
| ATGCAATGAGAGCTGGTTAA+TGG | - | chr4_2:17203670-17203689 | None:intergenic | 40.0% | |
| GTACTTTAGCATCCATGCTT+TGG | + | chr4_2:17203905-17203924 | Msa0592090:intron | 40.0% | |
| CACAGTCCATACATTGGATA+AGG | - | chr4_2:17203963-17203982 | None:intergenic | 40.0% | |
| CAAGAATACGGACGTGTATT+TGG | - | chr4_2:17204023-17204042 | None:intergenic | 40.0% | |
| ATACACGTCCGTATTCTTGT+TGG | + | chr4_2:17204024-17204043 | Msa0592090:intron | 40.0% | |
| GATATGCATTGTGAGTGACT+AGG | - | chr4_2:17204074-17204093 | None:intergenic | 40.0% | |
| TTCAGCTATGGCGTTCTTGA+AGG | + | chr4_2:17201605-17201624 | Msa0592090:exon | 45.0% | |
| TCAGCTATGGCGTTCTTGAA+GGG | + | chr4_2:17201606-17201625 | Msa0592090:exon | 45.0% | |
| TATGGCGTTCTTGAAGGGAA+AGG | + | chr4_2:17201611-17201630 | Msa0592090:exon | 45.0% | |
| ATTAAGTTCTTGGAGAGGGG+TGG | + | chr4_2:17201837-17201856 | Msa0592090:intron | 45.0% | |
| ! | CTTCGAGTGGGTTTGAACTT+TGG | + | chr4_2:17201972-17201991 | Msa0592090:intron | 45.0% |
| GACAAATTGAGGCAAGTGAC+TGG | + | chr4_2:17202086-17202105 | Msa0592090:intron | 45.0% | |
| GTTGTACGAGCTGACACAAA+AGG | - | chr4_2:17202262-17202281 | None:intergenic | 45.0% | |
| ! | GCTAGTTTGTGTAGGTAGGT+AGG | + | chr4_2:17202567-17202586 | Msa0592090:intron | 45.0% |
| AGCCAACTTCTATCCGATGT+GGG | - | chr4_2:17202654-17202673 | None:intergenic | 45.0% | |
| AAGCCAACTTCTATCCGATG+TGG | - | chr4_2:17202655-17202674 | None:intergenic | 45.0% | |
| CTAACACAACCCCACAAAAC+CGG | - | chr4_2:17202719-17202738 | None:intergenic | 45.0% | |
| AGTAGCGCCTGTATGGTATA+AGG | + | chr4_2:17203384-17203403 | Msa0592090:intron | 45.0% | |
| CAATGAGAGCTGGTTAATGG+AGG | - | chr4_2:17203667-17203686 | None:intergenic | 45.0% | |
| TAGCAGTCCTTCTGCAAAAG+AGG | + | chr4_2:17203689-17203708 | Msa0592090:intron | 45.0% | |
| AGCAGTCCTTCTGCAAAAGA+GGG | + | chr4_2:17203690-17203709 | Msa0592090:intron | 45.0% | |
| AAGGAGGAGACTCCATGTTA+GGG | - | chr4_2:17203721-17203740 | None:intergenic | 45.0% | |
| ACTGCGTATGCAGCAACTAT+TGG | + | chr4_2:17203813-17203832 | Msa0592090:intron | 45.0% | |
| GGTTGACACAGTCCATACAT+TGG | - | chr4_2:17203969-17203988 | None:intergenic | 45.0% | |
| ! | ATGGACTGTGTCAACCATTG+TGG | + | chr4_2:17203973-17203992 | Msa0592090:intron | 45.0% |
| TGTTACCAAAGTGGCAGCGT+TGG | + | chr4_2:17201638-17201657 | Msa0592090:CDS | 50.0% | |
| TGTTCTTCCAGCTGCTATGG+TGG | + | chr4_2:17201671-17201690 | Msa0592090:CDS | 50.0% | |
| GTCCCACATCGGATAGAAGT+TGG | + | chr4_2:17202649-17202668 | Msa0592090:intron | 50.0% | |
| !! | ACCTCACAAGCCGGTTTTGT+GGG | + | chr4_2:17202706-17202725 | Msa0592090:intron | 50.0% |
| !! | CGGTTTTGTGGGGTTGTGTT+AGG | + | chr4_2:17202717-17202736 | Msa0592090:intron | 50.0% |
| GTTAATGGAGGCTTCCAAGC+AGG | - | chr4_2:17203655-17203674 | None:intergenic | 50.0% | |
| GACTGCTATGCAATGAGAGC+TGG | - | chr4_2:17203677-17203696 | None:intergenic | 50.0% | |
| ! | GGGAAACCCTCTTTTGCAGA+AGG | - | chr4_2:17203699-17203718 | None:intergenic | 50.0% |
| AAGAGGGTTTCCCCCTAACA+TGG | + | chr4_2:17203706-17203725 | Msa0592090:intron | 50.0% | |
| AGGAGGAGACTCCATGTTAG+GGG | - | chr4_2:17203720-17203739 | None:intergenic | 50.0% | |
| GAAGGAGGAGACTCCATGTT+AGG | - | chr4_2:17203722-17203741 | None:intergenic | 50.0% | |
| ATACGCAGTCACGGTTTAGG+AGG | - | chr4_2:17203802-17203821 | None:intergenic | 50.0% | |
| TGCATACGCAGTCACGGTTT+AGG | - | chr4_2:17203805-17203824 | None:intergenic | 50.0% | |
| AGTTGCTGCATACGCAGTCA+CGG | - | chr4_2:17203811-17203830 | None:intergenic | 50.0% | |
| ACTTACTAATAGCGGCTGCG+AGG | + | chr4_2:17203934-17203953 | Msa0592090:intron | 50.0% | |
| GTAGCTCCCCGTTCATTATC+AGG | + | chr4_2:17204393-17204412 | Msa0592090:three_prime_UTR | 50.0% | |
| ! | TCTTGCCAACGCTGCCACTT+TGG | - | chr4_2:17201646-17201665 | None:intergenic | 55.0% |
| !! | GTGGCAGCGTTGGCAAGATT+CGG | + | chr4_2:17201648-17201667 | Msa0592090:CDS | 55.0% |
| CGGTGTTCTTCCAGCTGCTA+TGG | + | chr4_2:17201668-17201687 | Msa0592090:CDS | 55.0% | |
| AACCTCCGCCACCACCAATT+AGG | + | chr4_2:17201734-17201753 | Msa0592090:CDS | 55.0% | |
| !! | TACCTAATTGGTGGTGGCGG+AGG | - | chr4_2:17201739-17201758 | None:intergenic | 55.0% |
| GCAATCCTCACCTCACAAGC+CGG | + | chr4_2:17202697-17202716 | Msa0592090:intron | 55.0% | |
| !! | CAAAACCGGCTTGTGAGGTG+AGG | - | chr4_2:17202705-17202724 | None:intergenic | 55.0% |
| !! | CACCTCACAAGCCGGTTTTG+TGG | + | chr4_2:17202705-17202724 | Msa0592090:intron | 55.0% |
| !! | CCTCACAAGCCGGTTTTGTG+GGG | + | chr4_2:17202707-17202726 | Msa0592090:intron | 55.0% |
| GTAGTAGGGGAAGGACTGAG+AGG | - | chr4_2:17203337-17203356 | None:intergenic | 55.0% | |
| GGAGGAGACTCCATGTTAGG+GGG | - | chr4_2:17203719-17203738 | None:intergenic | 55.0% | |
| TCTGGTGGAACAGGTGCATG+AGG | + | chr4_2:17204192-17204211 | Msa0592090:intron | 55.0% | |
| CTGGTGGAACAGGTGCATGA+GGG | + | chr4_2:17204193-17204212 | Msa0592090:intron | 55.0% | |
| AGAGCAGCCACCATAGCAGC+TGG | - | chr4_2:17201681-17201700 | None:intergenic | 60.0% | |
| !! | CCCCACAAAACCGGCTTGTG+AGG | - | chr4_2:17202710-17202729 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 17201441 | 17204516 | 17201441 | ID=Msa0592090;Name=Msa0592090 |
| chr4_2 | mRNA | 17201441 | 17204516 | 17201441 | ID=Msa0592090-mRNA-1;Parent=Msa0592090;Name=Msa0592090-mRNA-1;_AED=0.00;_eAED=0.00;_QI=171|1|1|1|0|0.5|2|312|47 |
| chr4_2 | exon | 17201441 | 17201755 | 17201441 | ID=Msa0592090-mRNA-1:exon:4973;Parent=Msa0592090-mRNA-1 |
| chr4_2 | exon | 17204205 | 17204516 | 17204205 | ID=Msa0592090-mRNA-1:exon:4974;Parent=Msa0592090-mRNA-1 |
| chr4_2 | five_prime_UTR | 17201441 | 17201611 | 17201441 | ID=Msa0592090-mRNA-1:five_prime_utr;Parent=Msa0592090-mRNA-1 |
| chr4_2 | CDS | 17201612 | 17201755 | 17201612 | ID=Msa0592090-mRNA-1:cds;Parent=Msa0592090-mRNA-1 |
| chr4_2 | three_prime_UTR | 17204205 | 17204516 | 17204205 | ID=Msa0592090-mRNA-1:three_prime_utr;Parent=Msa0592090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
