Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1030300 | XP_024625736.1 | 85.234 | 535 | 56 | 3 | 1 | 535 | 1 | 512 | 0.0 | 852 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1030300 | sp|O49596|HMGB2_ARATH | 65.854 | 82 | 28 | 0 | 4 | 85 | 29 | 110 | 3.39e-29 | 115 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1030300 | A0A2Z6MMR0 | 47.627 | 569 | 127 | 14 | 26 | 535 | 27 | 483 | 7.25e-130 | 397 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1030300 | TR | HMG |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1030300 | Msa1157230 | 0.914022 | 3.118637e-84 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1030300 | MtrunA17_Chr5g0407011 | 56.250 | 112 | 38 | 3 | 3 | 114 | 27 | 127 | 9.40e-30 | 114 |
| Msa1030300 | MtrunA17_Chr3g0143991 | 69.737 | 76 | 23 | 0 | 9 | 84 | 41 | 116 | 1.58e-29 | 114 |
| Msa1030300 | MtrunA17_Chr8g0370431 | 66.265 | 83 | 28 | 0 | 3 | 85 | 27 | 109 | 2.87e-29 | 112 |
| Msa1030300 | MtrunA17_Chr7g0242251 | 64.474 | 76 | 27 | 0 | 9 | 84 | 47 | 122 | 3.58e-26 | 105 |
| Msa1030300 | MtrunA17_Chr7g0251351 | 87.273 | 55 | 7 | 0 | 59 | 113 | 4 | 58 | 9.65e-25 | 97.8 |
| Msa1030300 | MtrunA17_Chr1g0212341 | 50.000 | 74 | 37 | 0 | 9 | 82 | 98 | 171 | 8.38e-18 | 82.4 |
| Msa1030300 | MtrunA17_Chr4g0052011 | 45.679 | 81 | 44 | 0 | 5 | 85 | 56 | 136 | 1.02e-16 | 77.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1030300 | AT1G20693.2 | 55.645 | 124 | 44 | 2 | 4 | 127 | 29 | 141 | 5.38e-33 | 123 |
| Msa1030300 | AT1G20693.3 | 65.854 | 82 | 28 | 0 | 4 | 85 | 29 | 110 | 3.35e-30 | 115 |
| Msa1030300 | AT1G20693.1 | 65.854 | 82 | 28 | 0 | 4 | 85 | 29 | 110 | 3.45e-30 | 115 |
| Msa1030300 | AT3G51880.2 | 53.782 | 119 | 41 | 2 | 4 | 122 | 44 | 148 | 3.50e-30 | 117 |
| Msa1030300 | AT3G51880.5 | 54.701 | 117 | 39 | 2 | 4 | 120 | 44 | 146 | 9.09e-30 | 115 |
| Msa1030300 | AT3G51880.1 | 54.701 | 117 | 39 | 2 | 4 | 120 | 44 | 146 | 9.09e-30 | 115 |
| Msa1030300 | AT3G51880.3 | 54.701 | 117 | 39 | 2 | 4 | 120 | 44 | 146 | 9.09e-30 | 115 |
| Msa1030300 | AT1G20696.2 | 57.303 | 89 | 38 | 0 | 2 | 90 | 24 | 112 | 3.22e-29 | 113 |
| Msa1030300 | AT1G20696.1 | 59.524 | 84 | 34 | 0 | 2 | 85 | 24 | 107 | 1.60e-28 | 110 |
| Msa1030300 | AT1G20696.5 | 58.140 | 86 | 36 | 0 | 2 | 87 | 24 | 109 | 2.38e-28 | 110 |
| Msa1030300 | AT3G51880.4 | 66.250 | 80 | 27 | 0 | 4 | 83 | 44 | 123 | 2.90e-28 | 110 |
| Msa1030300 | AT2G17560.2 | 53.933 | 89 | 41 | 0 | 2 | 90 | 24 | 112 | 1.63e-27 | 108 |
| Msa1030300 | AT2G17560.1 | 53.933 | 89 | 41 | 0 | 2 | 90 | 24 | 112 | 1.63e-27 | 108 |
| Msa1030300 | AT2G17560.3 | 53.933 | 89 | 41 | 0 | 2 | 90 | 24 | 112 | 1.92e-27 | 107 |
| Msa1030300 | AT4G35570.1 | 45.161 | 93 | 47 | 1 | 5 | 97 | 26 | 114 | 6.22e-22 | 92.0 |
| Msa1030300 | AT4G35570.2 | 45.161 | 93 | 47 | 1 | 5 | 97 | 26 | 114 | 6.22e-22 | 92.0 |
| Msa1030300 | AT1G20696.3 | 48.515 | 101 | 41 | 2 | 21 | 121 | 1 | 90 | 2.40e-20 | 86.3 |
| Msa1030300 | AT1G20696.4 | 55.385 | 65 | 29 | 0 | 21 | 85 | 1 | 65 | 1.01e-18 | 82.0 |
| Msa1030300 | AT2G34450.4 | 38.356 | 73 | 45 | 0 | 13 | 85 | 63 | 135 | 2.01e-13 | 68.6 |
| Msa1030300 | AT2G34450.3 | 38.356 | 73 | 45 | 0 | 13 | 85 | 63 | 135 | 2.01e-13 | 68.6 |
| Msa1030300 | AT2G34450.1 | 38.356 | 73 | 45 | 0 | 13 | 85 | 63 | 135 | 2.01e-13 | 68.6 |
| Msa1030300 | AT2G34450.2 | 39.189 | 74 | 44 | 1 | 13 | 85 | 63 | 136 | 5.88e-13 | 67.0 |
| Msa1030300 | AT5G23420.1 | 46.053 | 76 | 38 | 2 | 4 | 78 | 106 | 179 | 3.54e-12 | 67.0 |
Find 157 sgRNAs with CRISPR-Local
Find 292 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCGACTGGACTTGGATTTC+AGG | 0.210233 | 7_1:+64308802 | None:intergenic |
| TTCTGACGTGACCATTTCTT+TGG | 0.236690 | 7_1:+64308379 | None:intergenic |
| CTTCTTATTGTAGGCATTGA+TGG | 0.255785 | 7_1:+64310860 | None:intergenic |
| CTTCTTCACCAAGTCCTCTT+TGG | 0.266738 | 7_1:+64307935 | None:intergenic |
| TGTTGTTTGTTGTGCCAATT+TGG | 0.272200 | 7_1:-64307450 | Msa1030300:three_prime_UTR |
| GTAATTTACCTTAGCCGATA+TGG | 0.279830 | 7_1:-64307421 | Msa1030300:three_prime_UTR |
| GGCCTGCAATAATACTAATT+TGG | 0.281928 | 7_1:-64310829 | Msa1030300:intron |
| CCTACAGCTTCTGTGTTTGC+TGG | 0.289419 | 7_1:-64308221 | Msa1030300:CDS |
| TGCTACTCTGACTCAATCTT+TGG | 0.296211 | 7_1:-64308758 | Msa1030300:CDS |
| CAATTGTTGATTGTACAAAA+TGG | 0.322044 | 7_1:+64307560 | None:intergenic |
| AGGTTAAGCAAGCGTGTAAT+GGG | 0.339274 | 7_1:-64308301 | Msa1030300:CDS |
| TACCAAATTAGTATTATTGC+AGG | 0.347766 | 7_1:+64310827 | None:intergenic |
| CAAAAGGCTTCGACTGGACT+TGG | 0.362156 | 7_1:+64308794 | None:intergenic |
| CATCAGAACCTTCTTATTGT+AGG | 0.372193 | 7_1:+64310851 | None:intergenic |
| TAAATTACTAGGAACCAAAT+TGG | 0.373762 | 7_1:+64307436 | None:intergenic |
| TCATCCCTTGGATCTTGATC+AGG | 0.378081 | 7_1:+64308335 | None:intergenic |
| TTTACTTTCAGCAAATAATC+AGG | 0.379755 | 7_1:-64307366 | None:intergenic |
| CAAGTCCAGTCGAAGCCTTT+TGG | 0.385813 | 7_1:-64308793 | Msa1030300:CDS |
| TCTGACGTGACCATTTCTTT+GGG | 0.393592 | 7_1:+64308380 | None:intergenic |
| CTACAGCTTCTGTGTTTGCT+GGG | 0.393824 | 7_1:-64308220 | Msa1030300:CDS |
| TAAAGTACGTCAAGGGGAAC+TGG | 0.409531 | 7_1:+64307599 | None:intergenic |
| TGATGCAGAAAAGAAGAAAA+TGG | 0.414304 | 7_1:-64310895 | Msa1030300:CDS |
| TTTCAACTAGCCTCCTCATC+TGG | 0.417590 | 7_1:+64308096 | None:intergenic |
| TTTCTTTGGGAATGACTACT+TGG | 0.419374 | 7_1:+64308393 | None:intergenic |
| CAGGTTAAGCAAGCGTGTAA+TGG | 0.430082 | 7_1:-64308302 | Msa1030300:CDS |
| ACGTCAAGGGGAACTGGATT+GGG | 0.432504 | 7_1:+64307605 | None:intergenic |
| AAAGCAGCAAGAGGCAGTTA+AGG | 0.434200 | 7_1:-64307868 | Msa1030300:CDS |
| TTCACCGCTTGCTCGTAAAC+AGG | 0.445504 | 7_1:+64307960 | None:intergenic |
| ATGGAGAGACATTTGTTTGT+GGG | 0.445586 | 7_1:+64308438 | None:intergenic |
| CTTGATCAGGGTGAACATCC+TGG | 0.449172 | 7_1:+64308348 | None:intergenic |
| TACGTCAAGGGGAACTGGAT+TGG | 0.450076 | 7_1:+64307604 | None:intergenic |
| AAAGGAGACGGAGGCCTCTT+CGG | 0.451156 | 7_1:+64311529 | None:intergenic |
| TATGGCTGTCTTTATCAATT+CGG | 0.451986 | 7_1:-64307766 | Msa1030300:CDS |
| AGTAGTCATTCCCAAAGAAA+TGG | 0.456544 | 7_1:-64308390 | Msa1030300:CDS |
| CATTACACGCTTGCTTAACC+TGG | 0.461225 | 7_1:+64308303 | None:intergenic |
| TACCTCAGATGGGCAACCTT+GGG | 0.462011 | 7_1:+64308957 | None:intergenic |
| ATCAGACGGTGAAAACTCTA+AGG | 0.462564 | 7_1:-64307698 | Msa1030300:CDS |
| GTCAGAGTAGCAGGCGCCTG+TGG | 0.464475 | 7_1:+64308769 | None:intergenic |
| AAAGATTGAGTCAGAGTAGC+AGG | 0.466588 | 7_1:+64308760 | None:intergenic |
| CAGTTCTTTGAAAAGTTCCA+TGG | 0.469713 | 7_1:+64308175 | None:intergenic |
| TCAATCTTTGGATTCGAGAC+AGG | 0.470525 | 7_1:-64308746 | Msa1030300:intron |
| AAAACAAAATCTACCGATCA+AGG | 0.474475 | 7_1:+64307505 | None:intergenic |
| AAGCAACGGTTGCCTCTCTC+AGG | 0.475194 | 7_1:-64308059 | Msa1030300:CDS |
| AACGAAAGCAAGTCATCTGC+GGG | 0.478267 | 7_1:+64308260 | None:intergenic |
| AAAGAAATGGTCACGTCAGA+AGG | 0.478467 | 7_1:-64308377 | Msa1030300:CDS |
| AAAGAATGTTATACCTCAGA+TGG | 0.481184 | 7_1:+64308946 | None:intergenic |
| TGTGGGTTTGCGAACACGAC+AGG | 0.487120 | 7_1:+64308455 | None:intergenic |
| CAATTGGCTAGTTTAATACA+AGG | 0.490937 | 7_1:-64307543 | Msa1030300:three_prime_UTR |
| TGAGCAACTCAAGAAGCAAT+TGG | 0.491820 | 7_1:-64307826 | Msa1030300:CDS |
| AACACGACAGGATCAGAAAT+CGG | 0.494737 | 7_1:+64308467 | None:intergenic |
| GACTAAGAAGGTAAAACAAA+TGG | 0.496958 | 7_1:-64308992 | Msa1030300:CDS |
| GCAGGCGCCTGTGGGCCAAA+AGG | 0.499838 | 7_1:+64308778 | None:intergenic |
| TGACCTGCTCAAGTGTACTT+TGG | 0.503792 | 7_1:+64308036 | None:intergenic |
| AGAGGCAACCGTTGCTTGAG+AGG | 0.504722 | 7_1:+64308065 | None:intergenic |
| AGCTAGTTCCGCCTCAGCTA+AGG | 0.504919 | 7_1:+64307803 | None:intergenic |
| GGAGGCCTCTTCGGCTTCGA+TGG | 0.507696 | 7_1:+64311538 | None:intergenic |
| GTGGGCCAAAAGGCTTCGAC+TGG | 0.508859 | 7_1:+64308788 | None:intergenic |
| GGCGACAGCGAAGACTCATT+AGG | 0.508877 | 7_1:+64308823 | None:intergenic |
| TCAAGTTTAAAGTACGTCAA+GGG | 0.509939 | 7_1:+64307592 | None:intergenic |
| ACCTTCTTAGTCCTTGATGT+AGG | 0.510073 | 7_1:+64309003 | None:intergenic |
| AGAGAAAAGAGTGAGGAAGA+AGG | 0.510450 | 7_1:+64311599 | None:intergenic |
| GGTGAATGCCAAAGAGGACT+TGG | 0.510975 | 7_1:-64307943 | Msa1030300:CDS |
| GAGACTAATGTCGAAGCCAT+TGG | 0.511600 | 7_1:-64308150 | Msa1030300:CDS |
| TTCAAGTTTAAAGTACGTCA+AGG | 0.516691 | 7_1:+64307591 | None:intergenic |
| ATACCTCAGATGGGCAACCT+TGG | 0.518861 | 7_1:+64308956 | None:intergenic |
| CGACAATGAGGAGGAGGAGG+AGG | 0.521387 | 7_1:-64310581 | Msa1030300:CDS |
| ATCTGTAGATGTAGTCATGA+AGG | 0.522020 | 7_1:-64308417 | Msa1030300:CDS |
| AGGCCAAAGTACACTTGAGC+AGG | 0.522526 | 7_1:-64308039 | Msa1030300:CDS |
| TTCTAGTGACTCGGAAGCCA+TGG | 0.526734 | 7_1:-64308192 | Msa1030300:CDS |
| AGAAATGGTCACGTCAGAAG+GGG | 0.527261 | 7_1:-64308375 | Msa1030300:CDS |
| CATTACATGAAAAGAAAGAA+AGG | 0.527411 | 7_1:+64311511 | None:intergenic |
| ATTGGGTAATCACCAACAAC+AGG | 0.529425 | 7_1:+64307622 | None:intergenic |
| GATGGAGAGACATTTGTTTG+TGG | 0.531109 | 7_1:+64308437 | None:intergenic |
| GATTATAATAGTAACCATAT+CGG | 0.533848 | 7_1:+64307407 | None:intergenic |
| ATCGGCTAAGGTAAATTACT+AGG | 0.534212 | 7_1:+64307425 | None:intergenic |
| TCAGCAGAAGCGACGTCCAA+TGG | 0.535708 | 7_1:+64308134 | None:intergenic |
| AATTAGGTTGGTAAAGCTGC+CGG | 0.536583 | 7_1:-64311059 | Msa1030300:intron |
| AGAACTTGAGGGCCTGTTGT+TGG | 0.541191 | 7_1:-64307634 | Msa1030300:CDS |
| TCATTAGGAGAGGAAGTTGA+GGG | 0.543272 | 7_1:+64308838 | None:intergenic |
| CTCATTAGGAGAGGAAGTTG+AGG | 0.543693 | 7_1:+64308837 | None:intergenic |
| AATAGTAACCATATCGGCTA+AGG | 0.546254 | 7_1:+64307413 | None:intergenic |
| CTTGCTTAACCTGGTGAAGT+AGG | 0.551714 | 7_1:+64308312 | None:intergenic |
| CACCCAAGGTTGCCCATCTG+AGG | 0.552929 | 7_1:-64308959 | Msa1030300:intron |
| AAGCATTCTTCGAGGCATGA+AGG | 0.553342 | 7_1:+64308000 | None:intergenic |
| CTCAGATGGGCAACCTTGGG+TGG | 0.553687 | 7_1:+64308960 | None:intergenic |
| CTACAATAAGAAGGTTCTGA+TGG | 0.555574 | 7_1:-64310850 | Msa1030300:CDS |
| AAAGACAGCCATACCTGTGT+TGG | 0.557090 | 7_1:+64307776 | None:intergenic |
| TTGACTAAGAAAGAACTTGA+GGG | 0.560316 | 7_1:-64307645 | Msa1030300:CDS |
| CATCAATGCCTACAATAAGA+AGG | 0.560886 | 7_1:-64310859 | Msa1030300:CDS |
| AGCTGAAGCCAACACAGGTA+TGG | 0.561143 | 7_1:-64307784 | Msa1030300:CDS |
| CAACATTGGCTTCTATCTAG+TGG | 0.561401 | 7_1:+64307468 | None:intergenic |
| AAGAAATGGTCACGTCAGAA+GGG | 0.563814 | 7_1:-64308376 | Msa1030300:CDS |
| TCAGAGTAGCAGGCGCCTGT+GGG | 0.570920 | 7_1:+64308770 | None:intergenic |
| CAAGTTTAAAGTACGTCAAG+GGG | 0.573610 | 7_1:+64307593 | None:intergenic |
| AACTCAAGCCTCTCAAGCAA+CGG | 0.576774 | 7_1:-64308073 | Msa1030300:CDS |
| ACCTACATCAAGGACTAAGA+AGG | 0.578453 | 7_1:-64309004 | Msa1030300:CDS |
| CCTCATCTGGTCGAATGCTG+AGG | 0.580011 | 7_1:+64308109 | None:intergenic |
| TGTTAAGAAAGCATTCTTCG+AGG | 0.581632 | 7_1:+64307992 | None:intergenic |
| ATTGGCACAACAAACAACAT+TGG | 0.582537 | 7_1:+64307454 | None:intergenic |
| CGACTACGACAATGAGGAGG+AGG | 0.582585 | 7_1:-64310587 | Msa1030300:CDS |
| CATCAATGCCCTTCGTGATG+AGG | 0.582798 | 7_1:-64307724 | Msa1030300:CDS |
| CGTTCAAACAGTTACTGTTG+AGG | 0.582849 | 7_1:-64308595 | Msa1030300:intron |
| TGGGCTTGATTCTAGTGACT+CGG | 0.584209 | 7_1:-64308201 | Msa1030300:CDS |
| CTTTAGGATGAGGATGATGA+GGG | 0.584948 | 7_1:-64310450 | Msa1030300:intron |
| TGGTGAAGTAGGTCATCCCT+TGG | 0.585337 | 7_1:+64308323 | None:intergenic |
| ATTGTAGAGAGAAAAGAGTG+AGG | 0.586111 | 7_1:+64311592 | None:intergenic |
| GCAAGAGGCAGTTAAGGTCA+AGG | 0.587689 | 7_1:-64307862 | Msa1030300:CDS |
| ACTTTAGGATGAGGATGATG+AGG | 0.588511 | 7_1:-64310451 | Msa1030300:intron |
| ATGAAAAGAAAGAAAGGAGA+CGG | 0.589136 | 7_1:+64311517 | None:intergenic |
| GTTGACTAAGAAAGAACTTG+AGG | 0.590085 | 7_1:-64307646 | Msa1030300:CDS |
| CTACGACAATGAGGAGGAGG+AGG | 0.590542 | 7_1:-64310584 | Msa1030300:CDS |
| TTCACCCTGATCAAGATCCA+AGG | 0.590806 | 7_1:-64308340 | Msa1030300:CDS |
| CTTCAGAGTGAGGTTCAAGA+AGG | 0.591413 | 7_1:-64311199 | Msa1030300:CDS |
| CATCCCTTGGATCTTGATCA+GGG | 0.596426 | 7_1:+64308336 | None:intergenic |
| ATTAACAGATACCTACATCA+AGG | 0.597079 | 7_1:-64309014 | Msa1030300:intron |
| CAAGCGTGTAATGGGGACAC+TGG | 0.598612 | 7_1:-64308293 | Msa1030300:CDS |
| AGCATTCTTCGAGGCATGAA+GGG | 0.598722 | 7_1:+64308001 | None:intergenic |
| ATGGTCGGCACTTCCACCCA+AGG | 0.600370 | 7_1:-64308973 | Msa1030300:CDS |
| GCAGGTCTGACTTCAGAGTG+AGG | 0.600951 | 7_1:-64311209 | Msa1030300:intron |
| CGCTTGCTCGTAAACAGGAA+GGG | 0.604065 | 7_1:+64307965 | None:intergenic |
| TATCTTGCAGAAAGTTCCGC+CGG | 0.604387 | 7_1:-64308510 | Msa1030300:intron |
| CCTTCCTGTTTACGAGCAAG+CGG | 0.605144 | 7_1:-64307964 | Msa1030300:CDS |
| AAAGGCTGAACTTCTAATGC+CGG | 0.605603 | 7_1:+64308491 | None:intergenic |
| GCAATTGGCCTTAGCTGAGG+CGG | 0.612733 | 7_1:-64307811 | Msa1030300:CDS |
| AAGAATGTTATACCTCAGAT+GGG | 0.615115 | 7_1:+64308947 | None:intergenic |
| CAACGAAAGCAAGTCATCTG+CGG | 0.615598 | 7_1:+64308259 | None:intergenic |
| ACAGAGACGTATATATTGTG+TGG | 0.616115 | 7_1:+64311171 | None:intergenic |
| CCTCAGCATTCGACCAGATG+AGG | 0.617245 | 7_1:-64308109 | Msa1030300:CDS |
| ATTAGGAGAGGAAGTTGAGG+GGG | 0.618690 | 7_1:+64308840 | None:intergenic |
| CTGATTCACCTCATCACGAA+GGG | 0.619420 | 7_1:+64307716 | None:intergenic |
| AGTGTACTTTGGCCTGAGAG+AGG | 0.623220 | 7_1:+64308047 | None:intergenic |
| TTCATGACTACATCTACAGA+TGG | 0.624634 | 7_1:+64308419 | None:intergenic |
| GAAGCAATTGGCCTTAGCTG+AGG | 0.628924 | 7_1:-64307814 | Msa1030300:CDS |
| CTGATCCATCGAAGCCGAAG+AGG | 0.631240 | 7_1:-64311543 | Msa1030300:CDS |
| AAGGGATGACCTACTTCACC+AGG | 0.631598 | 7_1:-64308321 | Msa1030300:CDS |
| CATTAGGAGAGGAAGTTGAG+GGG | 0.634288 | 7_1:+64308839 | None:intergenic |
| TCACCCTGATCAAGATCCAA+GGG | 0.645163 | 7_1:-64308339 | Msa1030300:CDS |
| ACAGGATCAGAAATCGGCAA+AGG | 0.646456 | 7_1:+64308473 | None:intergenic |
| CAGCGAAGACTCATTAGGAG+AGG | 0.648297 | 7_1:+64308828 | None:intergenic |
| GAAGAAAATGGAATATACGA+AGG | 0.650170 | 7_1:-64310883 | Msa1030300:CDS |
| TCGTGATGAGGTGAATCAGA+CGG | 0.651321 | 7_1:-64307712 | Msa1030300:CDS |
| GGCTGAACTTCTAATGCCGG+CGG | 0.652218 | 7_1:+64308494 | None:intergenic |
| AAGAAGGTAAAACAAATGGT+CGG | 0.653306 | 7_1:-64308988 | Msa1030300:CDS |
| CCAGCAAACACAGAAGCTGT+AGG | 0.657623 | 7_1:+64308221 | None:intergenic |
| GCAAGCGGTGAATGCCAAAG+AGG | 0.658160 | 7_1:-64307949 | Msa1030300:CDS |
| CAGCATTCGACCAGATGAGG+AGG | 0.664997 | 7_1:-64308106 | Msa1030300:CDS |
| TTGCTCGTAAACAGGAAGGG+TGG | 0.672610 | 7_1:+64307968 | None:intergenic |
| GAAATGGTCACGTCAGAAGG+GGG | 0.675891 | 7_1:-64308374 | Msa1030300:CDS |
| TGATGACGACTACGACAATG+AGG | 0.679912 | 7_1:-64310593 | Msa1030300:CDS |
| AAAAGAAAGAAAGGAGACGG+AGG | 0.683866 | 7_1:+64311520 | None:intergenic |
| GGTTAAGCAAGCGTGTAATG+GGG | 0.687162 | 7_1:-64308300 | Msa1030300:CDS |
| GAACTAGCTGAAGCCAACAC+AGG | 0.693957 | 7_1:-64307789 | Msa1030300:CDS |
| ACACAATATATACGTCTCTG+TGG | 0.697197 | 7_1:-64311169 | Msa1030300:intron |
| TCTGATTCACCTCATCACGA+AGG | 0.708064 | 7_1:+64307715 | None:intergenic |
| GAGTGAGGAAGAAGGTACTG+TGG | 0.709287 | 7_1:+64311607 | None:intergenic |
| TGACGACTACGACAATGAGG+AGG | 0.720377 | 7_1:-64310590 | Msa1030300:CDS |
| ACGAAAGCAAGTCATCTGCG+GGG | 0.766372 | 7_1:+64308261 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGAAATTATTTTGTTAAAT+CGG | + | chr7_1:64307557-64307576 | None:intergenic | 10.0% |
| !!! | CATTTTTTCTAATTTTGTTA+TGG | - | chr7_1:64307792-64307811 | Msa1030300:CDS | 15.0% |
| !!! | TTGATTTTAATATCTTTTTG+CGG | - | chr7_1:64308072-64308091 | Msa1030300:CDS | 15.0% |
| !! | TTAAAAGAATTTAAAGACAT+TGG | - | chr7_1:64309470-64309489 | Msa1030300:intron | 15.0% |
| !! | TGTTTATAAAAAAGTTAACT+AGG | - | chr7_1:64309591-64309610 | Msa1030300:intron | 15.0% |
| !! | AGATAAAAATAGTTATAACA+GGG | + | chr7_1:64310107-64310126 | None:intergenic | 15.0% |
| !!! | AAATTATTTTGTTAAATCGG+CGG | + | chr7_1:64307554-64307573 | None:intergenic | 20.0% |
| !!! | TTGATTTGTTTATGTACTTT+AGG | - | chr7_1:64308560-64308579 | Msa1030300:intron | 20.0% |
| !!! | TTTGAAGTAAACATTGTTAA+TGG | + | chr7_1:64308744-64308763 | None:intergenic | 20.0% |
| !!! | TTTTCAAAAGAGATAATTGA+AGG | + | chr7_1:64308815-64308834 | None:intergenic | 20.0% |
| !!! | TTACAAGTGTTTTCTAAAAT+AGG | - | chr7_1:64308850-64308869 | Msa1030300:CDS | 20.0% |
| !!! | TACAAGTGTTTTCTAAAATA+GGG | - | chr7_1:64308851-64308870 | Msa1030300:CDS | 20.0% |
| !! | TATTAATGTCTAATGAGAAA+TGG | - | chr7_1:64308938-64308957 | Msa1030300:intron | 20.0% |
| !! | GCACTAATTTAAAAATTCAT+TGG | + | chr7_1:64309106-64309125 | None:intergenic | 20.0% |
| !! | AATATCTTGGACAAATTAAT+TGG | - | chr7_1:64309132-64309151 | Msa1030300:intron | 20.0% |
| !! | ATAAATTGTGTGAAATGTAA+AGG | - | chr7_1:64309348-64309367 | Msa1030300:intron | 20.0% |
| !! | AGTTCGAAAAAATATAATTG+AGG | + | chr7_1:64309569-64309588 | None:intergenic | 20.0% |
| !!! | AAAATTCCTAAATTTGACTT+TGG | + | chr7_1:64309988-64310007 | None:intergenic | 20.0% |
| !! | GATAAAAATAGTTATAACAG+GGG | + | chr7_1:64310106-64310125 | None:intergenic | 20.0% |
| !! | GAGATAAAAATAGTTATAAC+AGG | + | chr7_1:64310108-64310127 | None:intergenic | 20.0% |
| !!! | TAACTATTTTTATCTCGTAA+TGG | - | chr7_1:64310112-64310131 | Msa1030300:intron | 20.0% |
| !!! | TAAATGTTTTAAATCTGTGA+AGG | + | chr7_1:64310326-64310345 | None:intergenic | 20.0% |
| !!! | CAGATTTAAAACATTTAATG+TGG | - | chr7_1:64310329-64310348 | Msa1030300:intron | 20.0% |
| !! | GATTATAATAGTAACCATAT+CGG | + | chr7_1:64311622-64311641 | None:intergenic | 20.0% |
| !! | TTTTCTCTCTACAATCATAA+TGG | - | chr7_1:64307442-64307461 | Msa1030300:three_prime_UTR | 25.0% |
| ! | CATTACATGAAAAGAAAGAA+AGG | + | chr7_1:64307518-64307537 | None:intergenic | 25.0% |
| ! | ATTGCGATCAAATTTCAATT+AGG | - | chr7_1:64307951-64307970 | Msa1030300:CDS | 25.0% |
| ! | TACCAAATTAGTATTATTGC+AGG | + | chr7_1:64308202-64308221 | None:intergenic | 25.0% |
| !!! | TGAAGTATTTTCGATGTATT+AGG | - | chr7_1:64308322-64308341 | Msa1030300:CDS | 25.0% |
| ! | ATCAATATTAACACCTAACA+AGG | + | chr7_1:64308518-64308537 | None:intergenic | 25.0% |
| ! | TTGTTAGGTGTTAATATTGA+TGG | - | chr7_1:64308517-64308536 | Msa1030300:intron | 25.0% |
| ! | AGTACATAAACAAATCAATG+AGG | + | chr7_1:64308558-64308577 | None:intergenic | 25.0% |
| !! | TTCACTTTGTTTGGATTTAA+AGG | - | chr7_1:64309028-64309047 | Msa1030300:intron | 25.0% |
| ! | ATGTGTTGTAAAAACTGTTT+AGG | - | chr7_1:64309185-64309204 | Msa1030300:intron | 25.0% |
| ! | AAGAATTTAAAGACATTGGA+AGG | - | chr7_1:64309474-64309493 | Msa1030300:intron | 25.0% |
| !!! | TGAGAGTTTGAATTTGTTTT+CGG | - | chr7_1:64309510-64309529 | Msa1030300:intron | 25.0% |
| !!! | TACTTTTTTTTGACAGAAGT+TGG | - | chr7_1:64309769-64309788 | Msa1030300:intron | 25.0% |
| !! | ACTATTAGGAATTATCGATT+GGG | - | chr7_1:64309916-64309935 | Msa1030300:intron | 25.0% |
| ! | TTGAAACCAAAGTCAAATTT+AGG | - | chr7_1:64309979-64309998 | Msa1030300:intron | 25.0% |
| !! | TCTTTTCTTATCATAGCTTA+CGG | - | chr7_1:64310472-64310491 | Msa1030300:intron | 25.0% |
| !! | TTTTCTTTTTGTTCTTTGAG+AGG | + | chr7_1:64311123-64311142 | None:intergenic | 25.0% |
| ! | AGAACAAAAAGAAAAGATTG+TGG | - | chr7_1:64311128-64311147 | Msa1030300:intron | 25.0% |
| !! | CAATTGTTGATTGTACAAAA+TGG | + | chr7_1:64311469-64311488 | None:intergenic | 25.0% |
| !! | CATTTTGTACAATCAACAAT+TGG | - | chr7_1:64311467-64311486 | Msa1030300:intron | 25.0% |
| !!! | TATTTTGACTTTTCCTTGAT+CGG | - | chr7_1:64311508-64311527 | Msa1030300:intron | 25.0% |
| ! | TAAATTACTAGGAACCAAAT+TGG | + | chr7_1:64311593-64311612 | None:intergenic | 25.0% |
| ATGAAAAGAAAGAAAGGAGA+CGG | + | chr7_1:64307512-64307531 | None:intergenic | 30.0% | |
| !! | TCTAATTTTGTTATGGTTGC+AGG | - | chr7_1:64307799-64307818 | Msa1030300:CDS | 30.0% |
| CGATCAAATTTCAATTAGGT+TGG | - | chr7_1:64307955-64307974 | Msa1030300:CDS | 30.0% | |
| TTTATGTGTATTTCAGGACA+AGG | - | chr7_1:64308095-64308114 | Msa1030300:CDS | 30.0% | |
| TGATGCAGAAAAGAAGAAAA+TGG | - | chr7_1:64308131-64308150 | Msa1030300:CDS | 30.0% | |
| GAAGAAAATGGAATATACGA+AGG | - | chr7_1:64308143-64308162 | Msa1030300:CDS | 30.0% | |
| TTTGATGTTCTGATTTCACT+TGG | - | chr7_1:64308268-64308287 | Msa1030300:CDS | 30.0% | |
| ! | GTTAATATTGATGGTTGTGT+TGG | - | chr7_1:64308526-64308545 | Msa1030300:intron | 30.0% |
| !! | TGTTTATGTACTTTAGGATG+AGG | - | chr7_1:64308566-64308585 | Msa1030300:intron | 30.0% |
| CTTACCTCTTTGTTAATCTT+TGG | - | chr7_1:64308641-64308660 | Msa1030300:intron | 30.0% | |
| GGTTCAAAGATACATAGAAA+AGG | + | chr7_1:64308701-64308720 | None:intergenic | 30.0% | |
| AGAGATAATTGAAGGATACA+TGG | + | chr7_1:64308807-64308826 | None:intergenic | 30.0% | |
| !! | TCTCTTTTGAAAACTTGAGA+AGG | - | chr7_1:64308822-64308841 | Msa1030300:CDS | 30.0% |
| TGTCAAATGTTTGTTTGTGT+TGG | - | chr7_1:64308886-64308905 | Msa1030300:intron | 30.0% | |
| TAAGCCAAAGATTAATGAAG+AGG | - | chr7_1:64308976-64308995 | Msa1030300:CDS | 30.0% | |
| GGTGGAAGAATATGTTATTA+CGG | - | chr7_1:64308997-64309016 | Msa1030300:CDS | 30.0% | |
| GTGTGTTTATTCACTTTGTT+TGG | - | chr7_1:64309019-64309038 | Msa1030300:intron | 30.0% | |
| !! | GCATTTTGACAAATTTGTCA+TGG | - | chr7_1:64309056-64309075 | Msa1030300:intron | 30.0% |
| TAAAAATTCATTGGCCGATT+TGG | + | chr7_1:64309097-64309116 | None:intergenic | 30.0% | |
| TTAGTGCTATCACAATATCT+TGG | - | chr7_1:64309119-64309138 | Msa1030300:intron | 30.0% | |
| TTAGGTCGAAAATGAGTTAA+TGG | - | chr7_1:64309203-64309222 | Msa1030300:intron | 30.0% | |
| TGTGAAATGTAAAGGAATGA+TGG | - | chr7_1:64309356-64309375 | Msa1030300:intron | 30.0% | |
| GTGGCAATTATTCACTAATT+TGG | - | chr7_1:64309644-64309663 | Msa1030300:intron | 30.0% | |
| GCAATTATTCACTAATTTGG+TGG | - | chr7_1:64309647-64309666 | Msa1030300:intron | 30.0% | |
| TATCAGTGTTAATGGTCTAA+AGG | - | chr7_1:64309671-64309690 | Msa1030300:intron | 30.0% | |
| ATGACAACACAAATAAGTGT+TGG | + | chr7_1:64309701-64309720 | None:intergenic | 30.0% | |
| AAAGTAGATGAAACCAACAT+GGG | + | chr7_1:64309755-64309774 | None:intergenic | 30.0% | |
| AAAAGTAGATGAAACCAACA+TGG | + | chr7_1:64309756-64309775 | None:intergenic | 30.0% | |
| CATGTGAACAAGAAAAATGA+TGG | + | chr7_1:64309856-64309875 | None:intergenic | 30.0% | |
| ATTATACCTACGAGACTATT+AGG | - | chr7_1:64309902-64309921 | Msa1030300:intron | 30.0% | |
| ATAATTCCTAATAGTCTCGT+AGG | + | chr7_1:64309911-64309930 | None:intergenic | 30.0% | |
| GACTATTAGGAATTATCGAT+TGG | - | chr7_1:64309915-64309934 | Msa1030300:intron | 30.0% | |
| ! | TTGACTTTGGTTTCAAAACT+TGG | + | chr7_1:64309975-64309994 | None:intergenic | 30.0% |
| ATTAACAGATACCTACATCA+AGG | - | chr7_1:64310012-64310031 | Msa1030300:intron | 30.0% | |
| GACTAAGAAGGTAAAACAAA+TGG | - | chr7_1:64310034-64310053 | Msa1030300:intron | 30.0% | |
| AAGAAGGTAAAACAAATGGT+CGG | - | chr7_1:64310038-64310057 | Msa1030300:intron | 30.0% | |
| AAGAATGTTATACCTCAGAT+GGG | + | chr7_1:64310082-64310101 | None:intergenic | 30.0% | |
| AAAGAATGTTATACCTCAGA+TGG | + | chr7_1:64310083-64310102 | None:intergenic | 30.0% | |
| CCTGGAAGAAAAAAACAAAT+TGG | + | chr7_1:64310148-64310167 | None:intergenic | 30.0% | |
| !!! | CCAATTTGTTTTTTTCTTCC+AGG | - | chr7_1:64310145-64310164 | Msa1030300:intron | 30.0% |
| TTCTGCAAGATATAAACCAA+GGG | + | chr7_1:64310508-64310527 | None:intergenic | 30.0% | |
| TTTCTGCAAGATATAAACCA+AGG | + | chr7_1:64310509-64310528 | None:intergenic | 30.0% | |
| TATGGCTGTCTTTATCAATT+CGG | - | chr7_1:64311260-64311279 | Msa1030300:intron | 30.0% | |
| TTGACTAAGAAAGAACTTGA+GGG | - | chr7_1:64311381-64311400 | Msa1030300:intron | 30.0% | |
| ! | TCAAGTTTAAAGTACGTCAA+GGG | + | chr7_1:64311437-64311456 | None:intergenic | 30.0% |
| ! | TTCAAGTTTAAAGTACGTCA+AGG | + | chr7_1:64311438-64311457 | None:intergenic | 30.0% |
| !! | CAATTGGCTAGTTTAATACA+AGG | - | chr7_1:64311483-64311502 | Msa1030300:intron | 30.0% |
| AAAACAAAATCTACCGATCA+AGG | + | chr7_1:64311524-64311543 | None:intergenic | 30.0% | |
| ATTGTAGAGAGAAAAGAGTG+AGG | + | chr7_1:64307437-64307456 | None:intergenic | 35.0% | |
| AACTGCTTCGAATGAGAATT+TGG | - | chr7_1:64307580-64307599 | Msa1030300:three_prime_UTR | 35.0% | |
| ! | TTGACACATGTGATTTTCAC+TGG | - | chr7_1:64307685-64307704 | Msa1030300:CDS | 35.0% |
| ! | ATGTGATTTTCACTGGAAGT+TGG | - | chr7_1:64307692-64307711 | Msa1030300:CDS | 35.0% |
| ! | TGTGATTTTCACTGGAAGTT+GGG | - | chr7_1:64307693-64307712 | Msa1030300:CDS | 35.0% |
| ACAGAGACGTATATATTGTG+TGG | + | chr7_1:64307858-64307877 | None:intergenic | 35.0% | |
| ACACAATATATACGTCTCTG+TGG | - | chr7_1:64307857-64307876 | Msa1030300:CDS | 35.0% | |
| !!! | CATCGATTTCCATTTTTCAC+CGG | + | chr7_1:64307989-64308008 | None:intergenic | 35.0% |
| TTGCGGTTTATGTGTATTTC+AGG | - | chr7_1:64308089-64308108 | Msa1030300:CDS | 35.0% | |
| ! | TTTTCTGCATCAGCAATGTA+AGG | + | chr7_1:64308123-64308142 | None:intergenic | 35.0% |
| !! | CTTCTTATTGTAGGCATTGA+TGG | + | chr7_1:64308169-64308188 | None:intergenic | 35.0% |
| CATCAATGCCTACAATAAGA+AGG | - | chr7_1:64308167-64308186 | Msa1030300:CDS | 35.0% | |
| CATCAGAACCTTCTTATTGT+AGG | + | chr7_1:64308178-64308197 | None:intergenic | 35.0% | |
| ! | CTACAATAAGAAGGTTCTGA+TGG | - | chr7_1:64308176-64308195 | Msa1030300:CDS | 35.0% |
| GGCCTGCAATAATACTAATT+TGG | - | chr7_1:64308197-64308216 | Msa1030300:CDS | 35.0% | |
| !! | TTTTCGATGTATTAGGTTGC+CGG | - | chr7_1:64308329-64308348 | Msa1030300:CDS | 35.0% |
| !!! | TCTGCTAGAGGATTTTTTTC+CGG | + | chr7_1:64308351-64308370 | None:intergenic | 35.0% |
| TGTTTGAGTGTTTCCTTGTT+AGG | - | chr7_1:64308502-64308521 | Msa1030300:CDS | 35.0% | |
| AACAAAGAGGTAAGAGCAAA+TGG | + | chr7_1:64308635-64308654 | None:intergenic | 35.0% | |
| CAGTCCAAAGATTAACAAAG+AGG | + | chr7_1:64308648-64308667 | None:intergenic | 35.0% | |
| ACATTGTTAATGGCGAACAA+GGG | + | chr7_1:64308734-64308753 | None:intergenic | 35.0% | |
| AACATTGTTAATGGCGAACA+AGG | + | chr7_1:64308735-64308754 | None:intergenic | 35.0% | |
| TCCACCTCTTCATTAATCTT+TGG | + | chr7_1:64308983-64309002 | None:intergenic | 35.0% | |
| ! | ATGGACTGTGCTAAAAAGTT+AGG | - | chr7_1:64309375-64309394 | Msa1030300:intron | 35.0% |
| TGGACTGTGCTAAAAAGTTA+GGG | - | chr7_1:64309376-64309395 | Msa1030300:intron | 35.0% | |
| ! | TTGGTGGTTATCAGTGTTAA+TGG | - | chr7_1:64309663-64309682 | Msa1030300:intron | 35.0% |
| ! | TCGAATTTGCTTGTACTACA+TGG | - | chr7_1:64309722-64309741 | Msa1030300:intron | 35.0% |
| !! | ACTTGGAAGGTATCTGTTAA+TGG | + | chr7_1:64309958-64309977 | None:intergenic | 35.0% |
| ! | CTTTGGTTTCAAAACTTGGA+AGG | + | chr7_1:64309971-64309990 | None:intergenic | 35.0% |
| !!! | TGTTTTTTTCTTCCAGGTGT+TGG | - | chr7_1:64310151-64310170 | Msa1030300:intron | 35.0% |
| AGATAGAAATTTCCAACACC+TGG | + | chr7_1:64310166-64310185 | None:intergenic | 35.0% | |
| ATAGTTCTTGGGGAAAATCA+TGG | + | chr7_1:64310394-64310413 | None:intergenic | 35.0% | |
| ! | ATTTTCCCCAAGAACTATGT+TGG | - | chr7_1:64310396-64310415 | Msa1030300:intron | 35.0% |
| ACATCACCAACATAGTTCTT+GGG | + | chr7_1:64310405-64310424 | None:intergenic | 35.0% | |
| AACATCACCAACATAGTTCT+TGG | + | chr7_1:64310406-64310425 | None:intergenic | 35.0% | |
| ATGGAGAGACATTTGTTTGT+GGG | + | chr7_1:64310591-64310610 | None:intergenic | 35.0% | |
| TTCATGACTACATCTACAGA+TGG | + | chr7_1:64310610-64310629 | None:intergenic | 35.0% | |
| ATCTGTAGATGTAGTCATGA+AGG | - | chr7_1:64310609-64310628 | Msa1030300:CDS | 35.0% | |
| ! | TTTCTTTGGGAATGACTACT+TGG | + | chr7_1:64310636-64310655 | None:intergenic | 35.0% |
| AGTAGTCATTCCCAAAGAAA+TGG | - | chr7_1:64310636-64310655 | Msa1030300:CDS | 35.0% | |
| ! | CAGTTCTTTGAAAAGTTCCA+TGG | + | chr7_1:64310854-64310873 | None:intergenic | 35.0% |
| !! | TGTTAAGAAAGCATTCTTCG+AGG | + | chr7_1:64311037-64311056 | None:intergenic | 35.0% |
| !! | CTTTTTGTTCTTTGAGAGGA+AGG | + | chr7_1:64311119-64311138 | None:intergenic | 35.0% |
| GGTAAATAAAAAGCAGCAAG+AGG | - | chr7_1:64311149-64311168 | Msa1030300:intron | 35.0% | |
| GTTGACTAAGAAAGAACTTG+AGG | - | chr7_1:64311380-64311399 | Msa1030300:intron | 35.0% | |
| ! | CAAGTTTAAAGTACGTCAAG+GGG | + | chr7_1:64311436-64311455 | None:intergenic | 35.0% |
| ATTGGCACAACAAACAACAT+TGG | + | chr7_1:64311575-64311594 | None:intergenic | 35.0% | |
| !! | TGTTGTTTGTTGTGCCAATT+TGG | - | chr7_1:64311576-64311595 | Msa1030300:exon | 35.0% |
| ATCGGCTAAGGTAAATTACT+AGG | + | chr7_1:64311604-64311623 | None:intergenic | 35.0% | |
| GTAATTTACCTTAGCCGATA+TGG | - | chr7_1:64311605-64311624 | Msa1030300:five_prime_UTR | 35.0% | |
| ! | AATAGTAACCATATCGGCTA+AGG | + | chr7_1:64311616-64311635 | None:intergenic | 35.0% |
| AGAGAAAAGAGTGAGGAAGA+AGG | + | chr7_1:64307430-64307449 | None:intergenic | 40.0% | |
| AAAAGAAAGAAAGGAGACGG+AGG | + | chr7_1:64307509-64307528 | None:intergenic | 40.0% | |
| ! | TATGAAGCACTCCTTACACA+TGG | - | chr7_1:64307718-64307737 | Msa1030300:CDS | 40.0% |
| CACTCCTTACACATGGAAAT+CGG | - | chr7_1:64307725-64307744 | Msa1030300:CDS | 40.0% | |
| !! | GTTACCGATTTCCATGTGTA+AGG | + | chr7_1:64307732-64307751 | None:intergenic | 40.0% |
| GGAAATCGGTAACATTGTTG+CGG | - | chr7_1:64307739-64307758 | Msa1030300:CDS | 40.0% | |
| !! | AATTAGGTTGGTAAAGCTGC+CGG | - | chr7_1:64307967-64307986 | Msa1030300:CDS | 40.0% |
| TGTTCTGATTTCACTTGGAC+TGG | - | chr7_1:64308273-64308292 | Msa1030300:CDS | 40.0% | |
| !! | GACAGAACTTTTTCTGCTAG+AGG | + | chr7_1:64308363-64308382 | None:intergenic | 40.0% |
| !! | ACTTTAGGATGAGGATGATG+AGG | - | chr7_1:64308575-64308594 | Msa1030300:intron | 40.0% |
| !! | CTTTAGGATGAGGATGATGA+GGG | - | chr7_1:64308576-64308595 | Msa1030300:intron | 40.0% |
| GCAGATTGTGTAATGAAGGA+AGG | + | chr7_1:64308677-64308696 | None:intergenic | 40.0% | |
| AGGTGCAGATTGTGTAATGA+AGG | + | chr7_1:64308681-64308700 | None:intergenic | 40.0% | |
| TGAGAAATGGTGTGTTGCAT+TGG | - | chr7_1:64308951-64308970 | Msa1030300:intron | 40.0% | |
| GCCAAAGATTAATGAAGAGG+TGG | - | chr7_1:64308979-64308998 | Msa1030300:CDS | 40.0% | |
| AACTGTGAAGTGTGCCAAAT+CGG | - | chr7_1:64309080-64309099 | Msa1030300:intron | 40.0% | |
| AAAAAGTTAGGGACTCGACA+TGG | - | chr7_1:64309387-64309406 | Msa1030300:intron | 40.0% | |
| ACCTACATCAAGGACTAAGA+AGG | - | chr7_1:64310022-64310041 | Msa1030300:intron | 40.0% | |
| ACCTTCTTAGTCCTTGATGT+AGG | + | chr7_1:64310026-64310045 | None:intergenic | 40.0% | |
| TCATTAGGAGAGGAAGTTGA+GGG | + | chr7_1:64310191-64310210 | None:intergenic | 40.0% | |
| AAAGATTGAGTCAGAGTAGC+AGG | + | chr7_1:64310269-64310288 | None:intergenic | 40.0% | |
| TGCTACTCTGACTCAATCTT+TGG | - | chr7_1:64310268-64310287 | Msa1030300:intron | 40.0% | |
| TCAATCTTTGGATTCGAGAC+AGG | - | chr7_1:64310280-64310299 | Msa1030300:intron | 40.0% | |
| CATCACCAACATAGTTCTTG+GGG | + | chr7_1:64310404-64310423 | None:intergenic | 40.0% | |
| CGTTCAAACAGTTACTGTTG+AGG | - | chr7_1:64310431-64310450 | Msa1030300:intron | 40.0% | |
| CAGTTACTGTTGAGGTAATG+TGG | - | chr7_1:64310439-64310458 | Msa1030300:intron | 40.0% | |
| AAAGGCTGAACTTCTAATGC+CGG | + | chr7_1:64310538-64310557 | None:intergenic | 40.0% | |
| AACACGACAGGATCAGAAAT+CGG | + | chr7_1:64310562-64310581 | None:intergenic | 40.0% | |
| GATGGAGAGACATTTGTTTG+TGG | + | chr7_1:64310592-64310611 | None:intergenic | 40.0% | |
| TCTGACGTGACCATTTCTTT+GGG | + | chr7_1:64310649-64310668 | None:intergenic | 40.0% | |
| TTCTGACGTGACCATTTCTT+TGG | + | chr7_1:64310650-64310669 | None:intergenic | 40.0% | |
| AAAGAAATGGTCACGTCAGA+AGG | - | chr7_1:64310649-64310668 | Msa1030300:CDS | 40.0% | |
| AAGAAATGGTCACGTCAGAA+GGG | - | chr7_1:64310650-64310669 | Msa1030300:CDS | 40.0% | |
| AGGTTAAGCAAGCGTGTAAT+GGG | - | chr7_1:64310725-64310744 | Msa1030300:intron | 40.0% | |
| TGAGCAACTCAAGAAGCAAT+TGG | - | chr7_1:64311200-64311219 | Msa1030300:CDS | 40.0% | |
| ATCAGACGGTGAAAACTCTA+AGG | - | chr7_1:64311328-64311347 | Msa1030300:intron | 40.0% | |
| ATTGGGTAATCACCAACAAC+AGG | + | chr7_1:64311407-64311426 | None:intergenic | 40.0% | |
| !! | CAACATTGGCTTCTATCTAG+TGG | + | chr7_1:64311561-64311580 | None:intergenic | 40.0% |
| CTTCAGAGTGAGGTTCAAGA+AGG | - | chr7_1:64307827-64307846 | Msa1030300:CDS | 45.0% | |
| GTAAAGCTGCCGGTGAAAAA+TGG | - | chr7_1:64307977-64307996 | Msa1030300:CDS | 45.0% | |
| ! | TGATGACGACTACGACAATG+AGG | - | chr7_1:64308433-64308452 | Msa1030300:CDS | 45.0% |
| ATACGCACGTAAGGTCTCAT+AGG | + | chr7_1:64309161-64309180 | None:intergenic | 45.0% | |
| CACATACTCATACGCACGTA+AGG | + | chr7_1:64309170-64309189 | None:intergenic | 45.0% | |
| ! | ACTGTAAAAAGCGCGAAAGC+AGG | - | chr7_1:64309248-64309267 | Msa1030300:intron | 45.0% |
| GTGAATAATTGCCACGAGTG+TGG | + | chr7_1:64309639-64309658 | None:intergenic | 45.0% | |
| ATTAGGAGAGGAAGTTGAGG+GGG | + | chr7_1:64310189-64310208 | None:intergenic | 45.0% | |
| CATTAGGAGAGGAAGTTGAG+GGG | + | chr7_1:64310190-64310209 | None:intergenic | 45.0% | |
| CTCATTAGGAGAGGAAGTTG+AGG | + | chr7_1:64310192-64310211 | None:intergenic | 45.0% | |
| TTCGACTGGACTTGGATTTC+AGG | + | chr7_1:64310227-64310246 | None:intergenic | 45.0% | |
| TTACGGACATGTCTAACCCT+TGG | - | chr7_1:64310489-64310508 | Msa1030300:intron | 45.0% | |
| TATCTTGCAGAAAGTTCCGC+CGG | - | chr7_1:64310516-64310535 | Msa1030300:intron | 45.0% | |
| ACAGGATCAGAAATCGGCAA+AGG | + | chr7_1:64310556-64310575 | None:intergenic | 45.0% | |
| AGAAATGGTCACGTCAGAAG+GGG | - | chr7_1:64310651-64310670 | Msa1030300:CDS | 45.0% | |
| TTCACCCTGATCAAGATCCA+AGG | - | chr7_1:64310686-64310705 | Msa1030300:intron | 45.0% | |
| TCACCCTGATCAAGATCCAA+GGG | - | chr7_1:64310687-64310706 | Msa1030300:intron | 45.0% | |
| CATCCCTTGGATCTTGATCA+GGG | + | chr7_1:64310693-64310712 | None:intergenic | 45.0% | |
| TCATCCCTTGGATCTTGATC+AGG | + | chr7_1:64310694-64310713 | None:intergenic | 45.0% | |
| CTTGCTTAACCTGGTGAAGT+AGG | + | chr7_1:64310717-64310736 | None:intergenic | 45.0% | |
| CATTACACGCTTGCTTAACC+TGG | + | chr7_1:64310726-64310745 | None:intergenic | 45.0% | |
| CAGGTTAAGCAAGCGTGTAA+TGG | - | chr7_1:64310724-64310743 | Msa1030300:intron | 45.0% | |
| GGTTAAGCAAGCGTGTAATG+GGG | - | chr7_1:64310726-64310745 | Msa1030300:intron | 45.0% | |
| AACGAAAGCAAGTCATCTGC+GGG | + | chr7_1:64310769-64310788 | None:intergenic | 45.0% | |
| CAACGAAAGCAAGTCATCTG+CGG | + | chr7_1:64310770-64310789 | None:intergenic | 45.0% | |
| CTACAGCTTCTGTGTTTGCT+GGG | - | chr7_1:64310806-64310825 | Msa1030300:intron | 45.0% | |
| TGGGCTTGATTCTAGTGACT+CGG | - | chr7_1:64310825-64310844 | Msa1030300:intron | 45.0% | |
| GAGACTAATGTCGAAGCCAT+TGG | - | chr7_1:64310876-64310895 | Msa1030300:CDS | 45.0% | |
| ! | TTTCAACTAGCCTCCTCATC+TGG | + | chr7_1:64310933-64310952 | None:intergenic | 45.0% |
| AACTCAAGCCTCTCAAGCAA+CGG | - | chr7_1:64310953-64310972 | Msa1030300:intron | 45.0% | |
| TGACCTGCTCAAGTGTACTT+TGG | + | chr7_1:64310993-64311012 | None:intergenic | 45.0% | |
| AGCATTCTTCGAGGCATGAA+GGG | + | chr7_1:64311028-64311047 | None:intergenic | 45.0% | |
| AAGCATTCTTCGAGGCATGA+AGG | + | chr7_1:64311029-64311048 | None:intergenic | 45.0% | |
| CTTCTTCACCAAGTCCTCTT+TGG | + | chr7_1:64311094-64311113 | None:intergenic | 45.0% | |
| AAAGCAGCAAGAGGCAGTTA+AGG | - | chr7_1:64311158-64311177 | Msa1030300:intron | 45.0% | |
| AAAGACAGCCATACCTGTGT+TGG | + | chr7_1:64311253-64311272 | None:intergenic | 45.0% | |
| CTGATTCACCTCATCACGAA+GGG | + | chr7_1:64311313-64311332 | None:intergenic | 45.0% | |
| TCTGATTCACCTCATCACGA+AGG | + | chr7_1:64311314-64311333 | None:intergenic | 45.0% | |
| TCGTGATGAGGTGAATCAGA+CGG | - | chr7_1:64311314-64311333 | Msa1030300:intron | 45.0% | |
| TAAAGTACGTCAAGGGGAAC+TGG | + | chr7_1:64311430-64311449 | None:intergenic | 45.0% | |
| !! | GAGTGAGGAAGAAGGTACTG+TGG | + | chr7_1:64307422-64307441 | None:intergenic | 50.0% |
| TGACGACTACGACAATGAGG+AGG | - | chr7_1:64308436-64308455 | Msa1030300:CDS | 50.0% | |
| ACATGGTTGTCGACCCATGT+TGG | - | chr7_1:64309739-64309758 | Msa1030300:intron | 50.0% | |
| TACCTCAGATGGGCAACCTT+GGG | + | chr7_1:64310072-64310091 | None:intergenic | 50.0% | |
| ATACCTCAGATGGGCAACCT+TGG | + | chr7_1:64310073-64310092 | None:intergenic | 50.0% | |
| CAGCGAAGACTCATTAGGAG+AGG | + | chr7_1:64310201-64310220 | None:intergenic | 50.0% | |
| CAAAAGGCTTCGACTGGACT+TGG | + | chr7_1:64310235-64310254 | None:intergenic | 50.0% | |
| ! | CAAGTCCAGTCGAAGCCTTT+TGG | - | chr7_1:64310233-64310252 | Msa1030300:intron | 50.0% |
| GAAATGGTCACGTCAGAAGG+GGG | - | chr7_1:64310652-64310671 | Msa1030300:CDS | 50.0% | |
| CTTGATCAGGGTGAACATCC+TGG | + | chr7_1:64310681-64310700 | None:intergenic | 50.0% | |
| TGGTGAAGTAGGTCATCCCT+TGG | + | chr7_1:64310706-64310725 | None:intergenic | 50.0% | |
| AAGGGATGACCTACTTCACC+AGG | - | chr7_1:64310705-64310724 | Msa1030300:intron | 50.0% | |
| ACGAAAGCAAGTCATCTGCG+GGG | + | chr7_1:64310768-64310787 | None:intergenic | 50.0% | |
| CCAGCAAACACAGAAGCTGT+AGG | + | chr7_1:64310808-64310827 | None:intergenic | 50.0% | |
| CCTACAGCTTCTGTGTTTGC+TGG | - | chr7_1:64310805-64310824 | Msa1030300:intron | 50.0% | |
| ! | TTCTAGTGACTCGGAAGCCA+TGG | - | chr7_1:64310834-64310853 | Msa1030300:CDS | 50.0% |
| AGTGTACTTTGGCCTGAGAG+AGG | + | chr7_1:64310982-64311001 | None:intergenic | 50.0% | |
| AGGCCAAAGTACACTTGAGC+AGG | - | chr7_1:64310987-64311006 | Msa1030300:intron | 50.0% | |
| TTGCTCGTAAACAGGAAGGG+TGG | + | chr7_1:64311061-64311080 | None:intergenic | 50.0% | |
| CGCTTGCTCGTAAACAGGAA+GGG | + | chr7_1:64311064-64311083 | None:intergenic | 50.0% | |
| CCTTCCTGTTTACGAGCAAG+CGG | - | chr7_1:64311062-64311081 | Msa1030300:intron | 50.0% | |
| TTCACCGCTTGCTCGTAAAC+AGG | + | chr7_1:64311069-64311088 | None:intergenic | 50.0% | |
| GGTGAATGCCAAAGAGGACT+TGG | - | chr7_1:64311083-64311102 | Msa1030300:intron | 50.0% | |
| GCAAGAGGCAGTTAAGGTCA+AGG | - | chr7_1:64311164-64311183 | Msa1030300:intron | 50.0% | |
| !! | GAAGCAATTGGCCTTAGCTG+AGG | - | chr7_1:64311212-64311231 | Msa1030300:intron | 50.0% |
| GAACTAGCTGAAGCCAACAC+AGG | - | chr7_1:64311237-64311256 | Msa1030300:intron | 50.0% | |
| AGCTGAAGCCAACACAGGTA+TGG | - | chr7_1:64311242-64311261 | Msa1030300:intron | 50.0% | |
| CATCAATGCCCTTCGTGATG+AGG | - | chr7_1:64311302-64311321 | Msa1030300:intron | 50.0% | |
| AGAACTTGAGGGCCTGTTGT+TGG | - | chr7_1:64311392-64311411 | Msa1030300:intron | 50.0% | |
| ACGTCAAGGGGAACTGGATT+GGG | + | chr7_1:64311424-64311443 | None:intergenic | 50.0% | |
| TACGTCAAGGGGAACTGGAT+TGG | + | chr7_1:64311425-64311444 | None:intergenic | 50.0% | |
| CTGATCCATCGAAGCCGAAG+AGG | - | chr7_1:64307483-64307502 | Msa1030300:three_prime_UTR | 55.0% | |
| AAAGGAGACGGAGGCCTCTT+CGG | + | chr7_1:64307500-64307519 | None:intergenic | 55.0% | |
| GCAGGTCTGACTTCAGAGTG+AGG | - | chr7_1:64307817-64307836 | Msa1030300:CDS | 55.0% | |
| CGACTACGACAATGAGGAGG+AGG | - | chr7_1:64308439-64308458 | Msa1030300:CDS | 55.0% | |
| CTACGACAATGAGGAGGAGG+AGG | - | chr7_1:64308442-64308461 | Msa1030300:CDS | 55.0% | |
| GCGAACAAGGGCAAACGAGA+TGG | + | chr7_1:64308722-64308741 | None:intergenic | 55.0% | |
| CTAGGTAACTGCCCACTACG+TGG | - | chr7_1:64309609-64309628 | Msa1030300:intron | 55.0% | |
| GTAACTGCCCACTACGTGGA+AGG | - | chr7_1:64309613-64309632 | Msa1030300:intron | 55.0% | |
| AGTGTGGCCTTCCACGTAGT+GGG | + | chr7_1:64309623-64309642 | None:intergenic | 55.0% | |
| GGCGACAGCGAAGACTCATT+AGG | + | chr7_1:64310206-64310225 | None:intergenic | 55.0% | |
| GGCTGAACTTCTAATGCCGG+CGG | + | chr7_1:64310535-64310554 | None:intergenic | 55.0% | |
| TGTGGGTTTGCGAACACGAC+AGG | + | chr7_1:64310574-64310593 | None:intergenic | 55.0% | |
| ! | CAAGCGTGTAATGGGGACAC+TGG | - | chr7_1:64310733-64310752 | Msa1030300:intron | 55.0% |
| TCAGCAGAAGCGACGTCCAA+TGG | + | chr7_1:64310895-64310914 | None:intergenic | 55.0% | |
| CCTCATCTGGTCGAATGCTG+AGG | + | chr7_1:64310920-64310939 | None:intergenic | 55.0% | |
| CCTCAGCATTCGACCAGATG+AGG | - | chr7_1:64310917-64310936 | Msa1030300:CDS | 55.0% | |
| CAGCATTCGACCAGATGAGG+AGG | - | chr7_1:64310920-64310939 | Msa1030300:intron | 55.0% | |
| AGAGGCAACCGTTGCTTGAG+AGG | + | chr7_1:64310964-64310983 | None:intergenic | 55.0% | |
| AAGCAACGGTTGCCTCTCTC+AGG | - | chr7_1:64310967-64310986 | Msa1030300:intron | 55.0% | |
| CCGCTTGCTCGTAAACAGGA+AGG | + | chr7_1:64311065-64311084 | None:intergenic | 55.0% | |
| GCAAGCGGTGAATGCCAAAG+AGG | - | chr7_1:64311077-64311096 | Msa1030300:intron | 55.0% | |
| !! | GCAATTGGCCTTAGCTGAGG+CGG | - | chr7_1:64311215-64311234 | Msa1030300:intron | 55.0% |
| AGCTAGTTCCGCCTCAGCTA+AGG | + | chr7_1:64311226-64311245 | None:intergenic | 55.0% | |
| CGACAATGAGGAGGAGGAGG+AGG | - | chr7_1:64308445-64308464 | Msa1030300:CDS | 60.0% | |
| CAATGAGGAGGAGGAGGAGG+AGG | - | chr7_1:64308448-64308467 | Msa1030300:CDS | 60.0% | |
| GGAGGAGGAGGAGGATGATG+AGG | - | chr7_1:64308457-64308476 | Msa1030300:CDS | 60.0% | |
| GAGTGTGGCCTTCCACGTAG+TGG | + | chr7_1:64309624-64309643 | None:intergenic | 60.0% | |
| TACGTGGAAGGCCACACTCG+TGG | - | chr7_1:64309625-64309644 | Msa1030300:intron | 60.0% | |
| ATGGTCGGCACTTCCACCCA+AGG | - | chr7_1:64310053-64310072 | Msa1030300:intron | 60.0% | |
| CTCAGATGGGCAACCTTGGG+TGG | + | chr7_1:64310069-64310088 | None:intergenic | 60.0% | |
| CACCCAAGGTTGCCCATCTG+AGG | - | chr7_1:64310067-64310086 | Msa1030300:intron | 60.0% | |
| GTGGGCCAAAAGGCTTCGAC+TGG | + | chr7_1:64310241-64310260 | None:intergenic | 60.0% | |
| ! | GTCGAAGCCTTTTGGCCCAC+AGG | - | chr7_1:64310241-64310260 | Msa1030300:intron | 60.0% |
| TCAGAGTAGCAGGCGCCTGT+GGG | + | chr7_1:64310259-64310278 | None:intergenic | 60.0% | |
| CACGTCAGAAGGGGGTTTCC+AGG | - | chr7_1:64310660-64310679 | Msa1030300:CDS | 60.0% | |
| GGAGGCCTCTTCGGCTTCGA+TGG | + | chr7_1:64307491-64307510 | None:intergenic | 65.0% | |
| GTCAGAGTAGCAGGCGCCTG+TGG | + | chr7_1:64310260-64310279 | None:intergenic | 65.0% | |
| GCAGGCGCCTGTGGGCCAAA+AGG | + | chr7_1:64310251-64310270 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 64307368 | 64311680 | 64307368 | ID=Msa1030300;Name=Msa1030300 |
| chr7_1 | mRNA | 64307368 | 64311680 | 64307368 | ID=Msa1030300-mRNA-1;Parent=Msa1030300;Name=Msa1030300-mRNA-1;_AED=0.05;_eAED=0.05;_QI=93|0.77|0.9|0.9|1|1|10|240|535 |
| chr7_1 | exon | 64307368 | 64308522 | 64307368 | ID=Msa1030300-mRNA-1:exon:14113;Parent=Msa1030300-mRNA-1 |
| chr7_1 | exon | 64308596 | 64308640 | 64308596 | ID=Msa1030300-mRNA-1:exon:14112;Parent=Msa1030300-mRNA-1 |
| chr7_1 | exon | 64308747 | 64308881 | 64308747 | ID=Msa1030300-mRNA-1:exon:14111;Parent=Msa1030300-mRNA-1 |
| chr7_1 | exon | 64308960 | 64309028 | 64308960 | ID=Msa1030300-mRNA-1:exon:14110;Parent=Msa1030300-mRNA-1 |
| chr7_1 | exon | 64310440 | 64310466 | 64310440 | ID=Msa1030300-mRNA-1:exon:14109;Parent=Msa1030300-mRNA-1 |
| chr7_1 | exon | 64310570 | 64310704 | 64310570 | ID=Msa1030300-mRNA-1:exon:14108;Parent=Msa1030300-mRNA-1 |
| chr7_1 | exon | 64310830 | 64310937 | 64310830 | ID=Msa1030300-mRNA-1:exon:14107;Parent=Msa1030300-mRNA-1 |
| chr7_1 | exon | 64311031 | 64311075 | 64311031 | ID=Msa1030300-mRNA-1:exon:14106;Parent=Msa1030300-mRNA-1 |
| chr7_1 | exon | 64311170 | 64311227 | 64311170 | ID=Msa1030300-mRNA-1:exon:14105;Parent=Msa1030300-mRNA-1 |
| chr7_1 | exon | 64311517 | 64311680 | 64311517 | ID=Msa1030300-mRNA-1:exon:14104;Parent=Msa1030300-mRNA-1 |
| chr7_1 | five_prime_UTR | 64311588 | 64311680 | 64311588 | ID=Msa1030300-mRNA-1:five_prime_utr;Parent=Msa1030300-mRNA-1 |
| chr7_1 | CDS | 64311517 | 64311587 | 64311517 | ID=Msa1030300-mRNA-1:cds;Parent=Msa1030300-mRNA-1 |
| chr7_1 | CDS | 64311170 | 64311227 | 64311170 | ID=Msa1030300-mRNA-1:cds;Parent=Msa1030300-mRNA-1 |
| chr7_1 | CDS | 64311031 | 64311075 | 64311031 | ID=Msa1030300-mRNA-1:cds;Parent=Msa1030300-mRNA-1 |
| chr7_1 | CDS | 64310830 | 64310937 | 64310830 | ID=Msa1030300-mRNA-1:cds;Parent=Msa1030300-mRNA-1 |
| chr7_1 | CDS | 64310570 | 64310704 | 64310570 | ID=Msa1030300-mRNA-1:cds;Parent=Msa1030300-mRNA-1 |
| chr7_1 | CDS | 64310440 | 64310466 | 64310440 | ID=Msa1030300-mRNA-1:cds;Parent=Msa1030300-mRNA-1 |
| chr7_1 | CDS | 64308960 | 64309028 | 64308960 | ID=Msa1030300-mRNA-1:cds;Parent=Msa1030300-mRNA-1 |
| chr7_1 | CDS | 64308747 | 64308881 | 64308747 | ID=Msa1030300-mRNA-1:cds;Parent=Msa1030300-mRNA-1 |
| chr7_1 | CDS | 64308596 | 64308640 | 64308596 | ID=Msa1030300-mRNA-1:cds;Parent=Msa1030300-mRNA-1 |
| chr7_1 | CDS | 64307608 | 64308522 | 64307608 | ID=Msa1030300-mRNA-1:cds;Parent=Msa1030300-mRNA-1 |
| chr7_1 | three_prime_UTR | 64307368 | 64307607 | 64307368 | ID=Msa1030300-mRNA-1:three_prime_utr;Parent=Msa1030300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
