Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1157230 | XP_024625736.1 | 85.234 | 535 | 56 | 3 | 1 | 535 | 1 | 512 | 0.0 | 853 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1157230 | sp|O49596|HMGB2_ARATH | 65.854 | 82 | 28 | 0 | 4 | 85 | 29 | 110 | 2.67e-29 | 115 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1157230 | A0A2Z6MMR0 | 47.627 | 569 | 127 | 14 | 26 | 535 | 27 | 483 | 4.55e-130 | 397 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1157230 | TR | HMG |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1030300 | Msa1157230 | 0.914022 | 3.118637e-84 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1157230 | MtrunA17_Chr3g0143991 | 66.265 | 83 | 28 | 0 | 2 | 84 | 34 | 116 | 1.71e-28 | 110 |
| Msa1157230 | MtrunA17_Chr5g0407011 | 55.856 | 111 | 38 | 3 | 4 | 114 | 28 | 127 | 2.73e-28 | 109 |
| Msa1157230 | MtrunA17_Chr8g0370431 | 64.634 | 82 | 29 | 0 | 4 | 85 | 28 | 109 | 3.26e-27 | 107 |
| Msa1157230 | MtrunA17_Chr7g0242251 | 63.158 | 76 | 28 | 0 | 9 | 84 | 47 | 122 | 4.90e-25 | 101 |
| Msa1157230 | MtrunA17_Chr7g0251351 | 87.273 | 55 | 7 | 0 | 59 | 113 | 4 | 58 | 9.65e-25 | 97.8 |
| Msa1157230 | MtrunA17_Chr1g0212341 | 48.649 | 74 | 38 | 0 | 9 | 82 | 98 | 171 | 1.59e-16 | 78.6 |
| Msa1157230 | MtrunA17_Chr4g0052011 | 44.578 | 83 | 46 | 0 | 3 | 85 | 54 | 136 | 1.94e-15 | 73.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1157230 | AT1G20693.2 | 55.645 | 124 | 44 | 2 | 4 | 127 | 29 | 141 | 5.60e-33 | 123 |
| Msa1157230 | AT1G20693.3 | 65.854 | 82 | 28 | 0 | 4 | 85 | 29 | 110 | 2.63e-30 | 115 |
| Msa1157230 | AT1G20693.1 | 65.854 | 82 | 28 | 0 | 4 | 85 | 29 | 110 | 2.71e-30 | 115 |
| Msa1157230 | AT1G20696.2 | 58.621 | 87 | 36 | 0 | 4 | 90 | 26 | 112 | 3.39e-29 | 112 |
| Msa1157230 | AT3G51880.2 | 52.941 | 119 | 42 | 2 | 4 | 122 | 44 | 148 | 8.39e-29 | 113 |
| Msa1157230 | AT1G20696.1 | 60.976 | 82 | 32 | 0 | 4 | 85 | 26 | 107 | 1.31e-28 | 111 |
| Msa1157230 | AT1G20696.5 | 59.524 | 84 | 34 | 0 | 4 | 87 | 26 | 109 | 1.91e-28 | 110 |
| Msa1157230 | AT3G51880.5 | 53.846 | 117 | 40 | 2 | 4 | 120 | 44 | 146 | 2.05e-28 | 112 |
| Msa1157230 | AT3G51880.1 | 53.846 | 117 | 40 | 2 | 4 | 120 | 44 | 146 | 2.05e-28 | 112 |
| Msa1157230 | AT3G51880.3 | 53.846 | 117 | 40 | 2 | 4 | 120 | 44 | 146 | 2.05e-28 | 112 |
| Msa1157230 | AT3G51880.4 | 65.000 | 80 | 28 | 0 | 4 | 83 | 44 | 123 | 6.16e-27 | 107 |
| Msa1157230 | AT2G17560.2 | 52.809 | 89 | 42 | 0 | 2 | 90 | 24 | 112 | 6.00e-26 | 103 |
| Msa1157230 | AT2G17560.1 | 52.809 | 89 | 42 | 0 | 2 | 90 | 24 | 112 | 6.00e-26 | 103 |
| Msa1157230 | AT2G17560.3 | 52.809 | 89 | 42 | 0 | 2 | 90 | 24 | 112 | 6.86e-26 | 103 |
| Msa1157230 | AT4G35570.1 | 44.086 | 93 | 48 | 1 | 5 | 97 | 26 | 114 | 1.25e-20 | 88.2 |
| Msa1157230 | AT4G35570.2 | 44.086 | 93 | 48 | 1 | 5 | 97 | 26 | 114 | 1.25e-20 | 88.2 |
| Msa1157230 | AT1G20696.3 | 48.515 | 101 | 41 | 2 | 21 | 121 | 1 | 90 | 2.38e-20 | 86.7 |
| Msa1157230 | AT1G20696.4 | 55.385 | 65 | 29 | 0 | 21 | 85 | 1 | 65 | 1.01e-18 | 82.0 |
| Msa1157230 | AT2G34450.4 | 38.356 | 73 | 45 | 0 | 13 | 85 | 63 | 135 | 2.30e-13 | 68.2 |
| Msa1157230 | AT2G34450.3 | 38.356 | 73 | 45 | 0 | 13 | 85 | 63 | 135 | 2.30e-13 | 68.2 |
| Msa1157230 | AT2G34450.1 | 38.356 | 73 | 45 | 0 | 13 | 85 | 63 | 135 | 2.30e-13 | 68.2 |
| Msa1157230 | AT2G34450.2 | 39.189 | 74 | 44 | 1 | 13 | 85 | 63 | 136 | 6.79e-13 | 67.0 |
| Msa1157230 | AT5G23420.1 | 46.053 | 76 | 38 | 2 | 4 | 78 | 106 | 179 | 3.19e-12 | 67.0 |
Find 156 sgRNAs with CRISPR-Local
Find 290 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCGACTGGACTTGGATTTC+AGG | 0.210233 | 7_4:-46111780 | None:intergenic |
| TTCTGACGTGACCATTTCTT+TGG | 0.236690 | 7_4:-46112203 | None:intergenic |
| CTTCTTATTGTAGGCATTGA+TGG | 0.255785 | 7_4:-46109723 | None:intergenic |
| CTTCTTCACCAAGTCCTCTT+TGG | 0.266738 | 7_4:-46112647 | None:intergenic |
| TGTTGTTTGTTGTGCCAATT+TGG | 0.272200 | 7_4:+46113132 | Msa1157230:three_prime_UTR |
| GTAATTTACCTTAGCCGATA+TGG | 0.279830 | 7_4:+46113161 | Msa1157230:three_prime_UTR |
| GGCCTGCAATAATACTAATT+TGG | 0.281928 | 7_4:+46109754 | Msa1157230:CDS |
| CCTACAGCTTCTGTGTTTGC+TGG | 0.289419 | 7_4:+46112361 | Msa1157230:CDS |
| TGCTACTCTGACTCAATCTT+TGG | 0.296211 | 7_4:+46111824 | Msa1157230:CDS |
| CAATTGTTGATTGTACAAAA+TGG | 0.322044 | 7_4:-46113022 | None:intergenic |
| AGGTTAAGCAAGCGTGTAAT+GGG | 0.339274 | 7_4:+46112281 | Msa1157230:CDS |
| TACCAAATTAGTATTATTGC+AGG | 0.347766 | 7_4:-46109756 | None:intergenic |
| CAAAAGGCTTCGACTGGACT+TGG | 0.362156 | 7_4:-46111788 | None:intergenic |
| CATCAGAACCTTCTTATTGT+AGG | 0.372193 | 7_4:-46109732 | None:intergenic |
| TAAATTACTAGGAACCAAAT+TGG | 0.373762 | 7_4:-46113146 | None:intergenic |
| TCATCCCTTGGATCTTGATC+AGG | 0.378081 | 7_4:-46112247 | None:intergenic |
| TTTACTTTCAGCAAATAATC+AGG | 0.379755 | 7_4:+46113216 | Msa1157230:three_prime_UTR |
| CAAGTCCAGTCGAAGCCTTT+TGG | 0.385813 | 7_4:+46111789 | Msa1157230:CDS |
| TCTGACGTGACCATTTCTTT+GGG | 0.393592 | 7_4:-46112202 | None:intergenic |
| CTACAGCTTCTGTGTTTGCT+GGG | 0.393824 | 7_4:+46112362 | Msa1157230:CDS |
| TAAAGTACGTCAAGGGGAAC+TGG | 0.409531 | 7_4:-46112983 | None:intergenic |
| TGATGCAGAAAAGAAGAAAA+TGG | 0.414304 | 7_4:+46109688 | Msa1157230:CDS |
| TTTCAACTAGCCTCCTCATC+TGG | 0.417590 | 7_4:-46112486 | None:intergenic |
| TTTCTTTGGGAATGACTACT+TGG | 0.419374 | 7_4:-46112189 | None:intergenic |
| AAAGGAGACTGAGGCCTCTT+CGG | 0.421599 | 7_4:-46109055 | None:intergenic |
| CAGGTTAAGCAAGCGTGTAA+TGG | 0.430082 | 7_4:+46112280 | Msa1157230:CDS |
| ACGTCAAGGGGAACTGGATT+GGG | 0.432504 | 7_4:-46112977 | None:intergenic |
| AAAGCAGCAAGAGGCAGTTA+AGG | 0.434200 | 7_4:+46112714 | Msa1157230:CDS |
| TTCACCGCTTGCTCGTAAAC+AGG | 0.445504 | 7_4:-46112622 | None:intergenic |
| ATGGAGAGACATTTGTTTGT+GGG | 0.445586 | 7_4:-46112144 | None:intergenic |
| CTTGATCAGGGTGAACATCC+TGG | 0.449172 | 7_4:-46112234 | None:intergenic |
| TACGTCAAGGGGAACTGGAT+TGG | 0.450076 | 7_4:-46112978 | None:intergenic |
| TATGGCTGTCTTTATCAATT+CGG | 0.451986 | 7_4:+46112816 | Msa1157230:CDS |
| AGTAGTCATTCCCAAAGAAA+TGG | 0.456544 | 7_4:+46112192 | Msa1157230:CDS |
| CATTACACGCTTGCTTAACC+TGG | 0.461225 | 7_4:-46112279 | None:intergenic |
| TACCTCAGATGGGCAACCTT+GGG | 0.462011 | 7_4:-46111625 | None:intergenic |
| ATCAGACGGTGAAAACTCTA+AGG | 0.462564 | 7_4:+46112884 | Msa1157230:CDS |
| GTCAGAGTAGCAGGCGCCTG+TGG | 0.464475 | 7_4:-46111813 | None:intergenic |
| AAAGATTGAGTCAGAGTAGC+AGG | 0.466588 | 7_4:-46111822 | None:intergenic |
| CAGTTCTTTGAAAAGTTCCA+TGG | 0.469713 | 7_4:-46112407 | None:intergenic |
| TCAATCTTTGGATTCGAGAC+AGG | 0.470525 | 7_4:+46111836 | Msa1157230:CDS |
| AAAACAAAATCTACCGATCA+AGG | 0.474475 | 7_4:-46113077 | None:intergenic |
| AAGCAACGGTTGCCTCTCTC+AGG | 0.475194 | 7_4:+46112523 | Msa1157230:CDS |
| AACGAAAGCAAGTCATCTGC+GGG | 0.478267 | 7_4:-46112322 | None:intergenic |
| AAAGAAATGGTCACGTCAGA+AGG | 0.478467 | 7_4:+46112205 | Msa1157230:CDS |
| AAAGAATGTTATACCTCAGA+TGG | 0.481184 | 7_4:-46111636 | None:intergenic |
| TGAGGCCTCTTCGGCTTCGA+TGG | 0.485814 | 7_4:-46109046 | None:intergenic |
| TGTGGGTTTGCGAACACGAC+AGG | 0.487120 | 7_4:-46112127 | None:intergenic |
| CAATTGGCTAGTTTAATACA+AGG | 0.490937 | 7_4:+46113039 | Msa1157230:three_prime_UTR |
| TGAGCAACTCAAGAAGCAAT+TGG | 0.491820 | 7_4:+46112756 | Msa1157230:CDS |
| AACACGACAGGATCAGAAAT+CGG | 0.494737 | 7_4:-46112115 | None:intergenic |
| GACTAAGAAGGTAAAACAAA+TGG | 0.496958 | 7_4:+46111590 | Msa1157230:CDS |
| TTCTAGTGACTTGGAAGCCA+TGG | 0.498589 | 7_4:+46112390 | Msa1157230:CDS |
| GCAGGCGCCTGTGGGCCAAA+AGG | 0.499838 | 7_4:-46111804 | None:intergenic |
| TGACCTGCTCAAGTGTACTT+TGG | 0.503792 | 7_4:-46112546 | None:intergenic |
| AGAGGCAACCGTTGCTTGAG+AGG | 0.504722 | 7_4:-46112517 | None:intergenic |
| AGCTAGTTCCGCCTCAGCTA+AGG | 0.504919 | 7_4:-46112779 | None:intergenic |
| GTGGGCCAAAAGGCTTCGAC+TGG | 0.508859 | 7_4:-46111794 | None:intergenic |
| GGCGACAGCGAAGACTCATT+AGG | 0.508877 | 7_4:-46111759 | None:intergenic |
| TCAAGTTTAAAGTACGTCAA+GGG | 0.509939 | 7_4:-46112990 | None:intergenic |
| ACCTTCTTAGTCCTTGATGT+AGG | 0.510073 | 7_4:-46111579 | None:intergenic |
| AGAGAAAAGAGTGAGGAAGA+AGG | 0.510450 | 7_4:-46108985 | None:intergenic |
| GGTGAATGCCAAAGAGGACT+TGG | 0.510975 | 7_4:+46112639 | Msa1157230:CDS |
| GAGACTAATGTCGAAGCCAT+TGG | 0.511600 | 7_4:+46112432 | Msa1157230:CDS |
| TTCAAGTTTAAAGTACGTCA+AGG | 0.516691 | 7_4:-46112991 | None:intergenic |
| ATACCTCAGATGGGCAACCT+TGG | 0.518861 | 7_4:-46111626 | None:intergenic |
| CGACAATGAGGAGGAGGAGG+AGG | 0.521387 | 7_4:+46110001 | Msa1157230:CDS |
| ATCTGTAGATGTAGTCATGA+AGG | 0.522020 | 7_4:+46112165 | Msa1157230:CDS |
| AGGCCAAAGTACACTTGAGC+AGG | 0.522526 | 7_4:+46112543 | Msa1157230:CDS |
| AGAAATGGTCACGTCAGAAG+GGG | 0.527261 | 7_4:+46112207 | Msa1157230:CDS |
| CATTACATGAAAAGAAAGAA+AGG | 0.527411 | 7_4:-46109073 | None:intergenic |
| ATTGGGTAATCACCAACAAC+AGG | 0.529425 | 7_4:-46112960 | None:intergenic |
| TGGGCTTGATTCTAGTGACT+TGG | 0.530076 | 7_4:+46112381 | Msa1157230:CDS |
| GATGGAGAGACATTTGTTTG+TGG | 0.531109 | 7_4:-46112145 | None:intergenic |
| GATTATAATAGTAACCATAT+CGG | 0.533848 | 7_4:-46113175 | None:intergenic |
| ATCGGCTAAGGTAAATTACT+AGG | 0.534212 | 7_4:-46113157 | None:intergenic |
| TCAGCAGAAGCGACGTCCAA+TGG | 0.535708 | 7_4:-46112448 | None:intergenic |
| AATTAGGTTGGTAAAGCTGC+CGG | 0.536583 | 7_4:+46109524 | Msa1157230:intron |
| AGAACTTGAGGGCCTGTTGT+TGG | 0.541191 | 7_4:+46112948 | Msa1157230:CDS |
| TCATTAGGAGAGGAAGTTGA+GGG | 0.543272 | 7_4:-46111744 | None:intergenic |
| CTCATTAGGAGAGGAAGTTG+AGG | 0.543693 | 7_4:-46111745 | None:intergenic |
| AATAGTAACCATATCGGCTA+AGG | 0.546254 | 7_4:-46113169 | None:intergenic |
| CTTGCTTAACCTGGTGAAGT+AGG | 0.551714 | 7_4:-46112270 | None:intergenic |
| CACCCAAGGTTGCCCATCTG+AGG | 0.552929 | 7_4:+46111623 | Msa1157230:CDS |
| AAGCATTCTTCGAGGCATGA+AGG | 0.553342 | 7_4:-46112582 | None:intergenic |
| CTCAGATGGGCAACCTTGGG+TGG | 0.553687 | 7_4:-46111622 | None:intergenic |
| CTACAATAAGAAGGTTCTGA+TGG | 0.555574 | 7_4:+46109733 | Msa1157230:CDS |
| AAAGACAGCCATACCTGTGT+TGG | 0.557090 | 7_4:-46112806 | None:intergenic |
| TTGACTAAGAAAGAACTTGA+GGG | 0.560316 | 7_4:+46112937 | Msa1157230:CDS |
| CATCAATGCCTACAATAAGA+AGG | 0.560886 | 7_4:+46109724 | Msa1157230:CDS |
| AGCTGAAGCCAACACAGGTA+TGG | 0.561143 | 7_4:+46112798 | Msa1157230:CDS |
| CAACATTGGCTTCTATCTAG+TGG | 0.561401 | 7_4:-46113114 | None:intergenic |
| AAGAAATGGTCACGTCAGAA+GGG | 0.563814 | 7_4:+46112206 | Msa1157230:CDS |
| TCAGAGTAGCAGGCGCCTGT+GGG | 0.570920 | 7_4:-46111812 | None:intergenic |
| CAAGTTTAAAGTACGTCAAG+GGG | 0.573610 | 7_4:-46112989 | None:intergenic |
| AACTCAAGCCTCTCAAGCAA+CGG | 0.576774 | 7_4:+46112509 | Msa1157230:CDS |
| ACCTACATCAAGGACTAAGA+AGG | 0.578453 | 7_4:+46111578 | Msa1157230:CDS |
| CCTCATCTGGTCGAATGCTG+AGG | 0.580011 | 7_4:-46112473 | None:intergenic |
| TGTTAAGAAAGCATTCTTCG+AGG | 0.581632 | 7_4:-46112590 | None:intergenic |
| ATTGGCACAACAAACAACAT+TGG | 0.582537 | 7_4:-46113128 | None:intergenic |
| CATCAATGCCCTTCGTGATG+AGG | 0.582798 | 7_4:+46112858 | Msa1157230:CDS |
| CGTTCAAACAGTTACTGTTG+AGG | 0.582849 | 7_4:+46111987 | Msa1157230:CDS |
| CTTTAGGATGAGGATGATGA+GGG | 0.584948 | 7_4:+46110132 | Msa1157230:intron |
| TGGTGAAGTAGGTCATCCCT+TGG | 0.585337 | 7_4:-46112259 | None:intergenic |
| CGACTACGACAATGAGGAGG+AGG | 0.586162 | 7_4:+46109995 | Msa1157230:CDS |
| GCAAGAGGCAGTTAAGGTCA+AGG | 0.587689 | 7_4:+46112720 | Msa1157230:CDS |
| ACTTTAGGATGAGGATGATG+AGG | 0.588511 | 7_4:+46110131 | Msa1157230:intron |
| ATTGTAGAGAGAAAAGAGTG+AGG | 0.588551 | 7_4:-46108992 | None:intergenic |
| GTTGACTAAGAAAGAACTTG+AGG | 0.590085 | 7_4:+46112936 | Msa1157230:CDS |
| CTACGACAATGAGGAGGAGG+AGG | 0.590542 | 7_4:+46109998 | Msa1157230:CDS |
| TTCACCCTGATCAAGATCCA+AGG | 0.590806 | 7_4:+46112242 | Msa1157230:CDS |
| CTTCAGAGTGAGGTTCAAGA+AGG | 0.591413 | 7_4:+46109384 | Msa1157230:CDS |
| CATCCCTTGGATCTTGATCA+GGG | 0.596426 | 7_4:-46112246 | None:intergenic |
| ATTAACAGATACCTACATCA+AGG | 0.597079 | 7_4:+46111568 | Msa1157230:intron |
| CAAGCGTGTAATGGGGACAC+TGG | 0.598612 | 7_4:+46112289 | Msa1157230:CDS |
| AGCATTCTTCGAGGCATGAA+GGG | 0.598722 | 7_4:-46112581 | None:intergenic |
| ATGGTCGGCACTTCCACCCA+AGG | 0.600370 | 7_4:+46111609 | Msa1157230:CDS |
| GCAGGTCTGACTTCAGAGTG+AGG | 0.600951 | 7_4:+46109374 | Msa1157230:intron |
| CGCTTGCTCGTAAACAGGAA+GGG | 0.604065 | 7_4:-46112617 | None:intergenic |
| TATCTTGCAGAAAGTTCCGC+CGG | 0.604387 | 7_4:+46112072 | Msa1157230:intron |
| CCTTCCTGTTTACGAGCAAG+CGG | 0.605144 | 7_4:+46112618 | Msa1157230:CDS |
| AAAGGCTGAACTTCTAATGC+CGG | 0.605603 | 7_4:-46112091 | None:intergenic |
| GCAATTGGCCTTAGCTGAGG+CGG | 0.612733 | 7_4:+46112771 | Msa1157230:CDS |
| AAGAATGTTATACCTCAGAT+GGG | 0.615115 | 7_4:-46111635 | None:intergenic |
| CAACGAAAGCAAGTCATCTG+CGG | 0.615598 | 7_4:-46112323 | None:intergenic |
| ACAGAGACGTATATATTGTG+TGG | 0.616115 | 7_4:-46109412 | None:intergenic |
| CCTCAGCATTCGACCAGATG+AGG | 0.617245 | 7_4:+46112473 | Msa1157230:CDS |
| ATTAGGAGAGGAAGTTGAGG+GGG | 0.618690 | 7_4:-46111742 | None:intergenic |
| CTGATTCACCTCATCACGAA+GGG | 0.619420 | 7_4:-46112866 | None:intergenic |
| AGTGTACTTTGGCCTGAGAG+AGG | 0.623220 | 7_4:-46112535 | None:intergenic |
| TTCATGACTACATCTACAGA+TGG | 0.624634 | 7_4:-46112163 | None:intergenic |
| GAAGCAATTGGCCTTAGCTG+AGG | 0.628924 | 7_4:+46112768 | Msa1157230:CDS |
| CTGATCCATCGAAGCCGAAG+AGG | 0.631240 | 7_4:+46109041 | Msa1157230:CDS |
| AAGGGATGACCTACTTCACC+AGG | 0.631598 | 7_4:+46112261 | Msa1157230:CDS |
| CATTAGGAGAGGAAGTTGAG+GGG | 0.634288 | 7_4:-46111743 | None:intergenic |
| TCACCCTGATCAAGATCCAA+GGG | 0.645163 | 7_4:+46112243 | Msa1157230:CDS |
| ACAGGATCAGAAATCGGCAA+AGG | 0.646456 | 7_4:-46112109 | None:intergenic |
| CAGCGAAGACTCATTAGGAG+AGG | 0.648297 | 7_4:-46111754 | None:intergenic |
| GAAGAAAATGGAATATACGA+AGG | 0.650170 | 7_4:+46109700 | Msa1157230:CDS |
| TCGTGATGAGGTGAATCAGA+CGG | 0.651321 | 7_4:+46112870 | Msa1157230:CDS |
| GGCTGAACTTCTAATGCCGG+CGG | 0.652218 | 7_4:-46112088 | None:intergenic |
| AAGAAGGTAAAACAAATGGT+CGG | 0.653306 | 7_4:+46111594 | Msa1157230:CDS |
| CCAGCAAACACAGAAGCTGT+AGG | 0.657623 | 7_4:-46112361 | None:intergenic |
| GCAAGCGGTGAATGCCAAAG+AGG | 0.658160 | 7_4:+46112633 | Msa1157230:CDS |
| AAAAGAAAGAAAGGAGACTG+AGG | 0.662029 | 7_4:-46109064 | None:intergenic |
| CAGCATTCGACCAGATGAGG+AGG | 0.664997 | 7_4:+46112476 | Msa1157230:CDS |
| TTGCTCGTAAACAGGAAGGG+TGG | 0.672610 | 7_4:-46112614 | None:intergenic |
| GAAATGGTCACGTCAGAAGG+GGG | 0.675891 | 7_4:+46112208 | Msa1157230:CDS |
| TGACGACGACTACGACAATG+AGG | 0.678618 | 7_4:+46109989 | Msa1157230:CDS |
| GGTTAAGCAAGCGTGTAATG+GGG | 0.687162 | 7_4:+46112282 | Msa1157230:CDS |
| GAACTAGCTGAAGCCAACAC+AGG | 0.693957 | 7_4:+46112793 | Msa1157230:CDS |
| ACACAATATATACGTCTCTG+TGG | 0.697197 | 7_4:+46109414 | Msa1157230:CDS |
| CGACGACTACGACAATGAGG+AGG | 0.706916 | 7_4:+46109992 | Msa1157230:CDS |
| TCTGATTCACCTCATCACGA+AGG | 0.708064 | 7_4:-46112867 | None:intergenic |
| GAGTGAGGAAGAAGGTACTG+TGG | 0.709287 | 7_4:-46108977 | None:intergenic |
| ACGAAAGCAAGTCATCTGCG+GGG | 0.766372 | 7_4:-46112321 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGAAATTATTTTGTTAAAT+CGG | - | chr7_4:46109115-46109134 | None:intergenic | 10.0% |
| !!! | CATTTTTTCTAATTTTGTTA+TGG | + | chr7_4:46109349-46109368 | Msa1157230:intron | 15.0% |
| !!! | TTGATTTTAATATCTTTTTG+CGG | + | chr7_4:46109629-46109648 | Msa1157230:intron | 15.0% |
| !! | TTAAAAGAATTTAAAGACAT+TGG | + | chr7_4:46111026-46111045 | Msa1157230:intron | 15.0% |
| !! | TGTTTATAAAAAAGTTAACT+AGG | + | chr7_4:46111147-46111166 | Msa1157230:intron | 15.0% |
| !! | AGATAAAAATAGTTATAACA+GGG | - | chr7_4:46111663-46111682 | None:intergenic | 15.0% |
| !!! | AAATTATTTTGTTAAATCGG+CGG | - | chr7_4:46109112-46109131 | None:intergenic | 20.0% |
| !!! | TTGATTTGTTTATGTACTTT+AGG | + | chr7_4:46110116-46110135 | Msa1157230:intron | 20.0% |
| !!! | TTTGAAGTAAACATTGTTAA+TGG | - | chr7_4:46110300-46110319 | None:intergenic | 20.0% |
| !!! | TTTTCAAAAGAGATAATTGA+AGG | - | chr7_4:46110371-46110390 | None:intergenic | 20.0% |
| !!! | TTACAAGTGTTTTCTAAAAT+AGG | + | chr7_4:46110406-46110425 | Msa1157230:intron | 20.0% |
| !!! | TACAAGTGTTTTCTAAAATA+GGG | + | chr7_4:46110407-46110426 | Msa1157230:intron | 20.0% |
| !! | TATTAATGTCTAATGAGAAA+TGG | + | chr7_4:46110494-46110513 | Msa1157230:intron | 20.0% |
| !! | GCACTAATTTAAAAATTCAT+TGG | - | chr7_4:46110662-46110681 | None:intergenic | 20.0% |
| !! | AATATCTTGGACAAATTAAT+TGG | + | chr7_4:46110688-46110707 | Msa1157230:intron | 20.0% |
| !! | ATAAATTGTGTGAAATGTAA+AGG | + | chr7_4:46110904-46110923 | Msa1157230:intron | 20.0% |
| !! | AGTTCGAAAAAATATAATTG+AGG | - | chr7_4:46111125-46111144 | None:intergenic | 20.0% |
| !!! | AAAATTCCTAAATTTGACTT+TGG | - | chr7_4:46111544-46111563 | None:intergenic | 20.0% |
| !! | GATAAAAATAGTTATAACAG+GGG | - | chr7_4:46111662-46111681 | None:intergenic | 20.0% |
| !! | GAGATAAAAATAGTTATAAC+AGG | - | chr7_4:46111664-46111683 | None:intergenic | 20.0% |
| !!! | TAACTATTTTTATCTCGTAA+TGG | + | chr7_4:46111668-46111687 | Msa1157230:intron | 20.0% |
| !!! | TAAATGTTTTAAATCTGTGA+AGG | - | chr7_4:46111882-46111901 | None:intergenic | 20.0% |
| !!! | CAGATTTAAAACATTTAATG+TGG | + | chr7_4:46111885-46111904 | Msa1157230:intron | 20.0% |
| !! | GATTATAATAGTAACCATAT+CGG | - | chr7_4:46113178-46113197 | None:intergenic | 20.0% |
| ! | CATTACATGAAAAGAAAGAA+AGG | - | chr7_4:46109076-46109095 | None:intergenic | 25.0% |
| ! | ATTGCGATCAAATTTCAATT+AGG | + | chr7_4:46109508-46109527 | Msa1157230:intron | 25.0% |
| ! | TACCAAATTAGTATTATTGC+AGG | - | chr7_4:46109759-46109778 | None:intergenic | 25.0% |
| !!! | TGAAGTATTTTCGATGTATT+AGG | + | chr7_4:46109878-46109897 | Msa1157230:intron | 25.0% |
| ! | ATCAATATTAACACCTAACA+AGG | - | chr7_4:46110074-46110093 | None:intergenic | 25.0% |
| ! | TTGTTAGGTGTTAATATTGA+TGG | + | chr7_4:46110073-46110092 | Msa1157230:intron | 25.0% |
| ! | AGTACATAAACAAATCAATG+AGG | - | chr7_4:46110114-46110133 | None:intergenic | 25.0% |
| !! | TTCACTTTGTTTGGATTTAA+AGG | + | chr7_4:46110584-46110603 | Msa1157230:intron | 25.0% |
| ! | ATGTGTTGTAAAAACTGTTT+AGG | + | chr7_4:46110741-46110760 | Msa1157230:intron | 25.0% |
| ! | AAGAATTTAAAGACATTGGA+AGG | + | chr7_4:46111030-46111049 | Msa1157230:intron | 25.0% |
| !!! | TGAGAGTTTGAATTTGTTTT+CGG | + | chr7_4:46111066-46111085 | Msa1157230:intron | 25.0% |
| !!! | TACTTTTTTTTGACAGAAGT+TGG | + | chr7_4:46111325-46111344 | Msa1157230:intron | 25.0% |
| !! | ACTATTAGGAATTATCGATT+GGG | + | chr7_4:46111472-46111491 | Msa1157230:intron | 25.0% |
| ! | TTGAAACCAAAGTCAAATTT+AGG | + | chr7_4:46111535-46111554 | Msa1157230:intron | 25.0% |
| !! | TCTTTTCTTATCATAGCTTA+CGG | + | chr7_4:46112028-46112047 | Msa1157230:intron | 25.0% |
| !! | TTTTCTTTTTGTTCTTTGAG+AGG | - | chr7_4:46112679-46112698 | None:intergenic | 25.0% |
| ! | AGAACAAAAAGAAAAGATTG+TGG | + | chr7_4:46112684-46112703 | Msa1157230:CDS | 25.0% |
| !! | CAATTGTTGATTGTACAAAA+TGG | - | chr7_4:46113025-46113044 | None:intergenic | 25.0% |
| !! | CATTTTGTACAATCAACAAT+TGG | + | chr7_4:46113023-46113042 | Msa1157230:three_prime_UTR | 25.0% |
| !!! | TATTTTGACTTTTCCTTGAT+CGG | + | chr7_4:46113064-46113083 | Msa1157230:three_prime_UTR | 25.0% |
| ! | TAAATTACTAGGAACCAAAT+TGG | - | chr7_4:46113149-46113168 | None:intergenic | 25.0% |
| ! | TTTTCTCTCTACAATCGTAA+TGG | + | chr7_4:46109000-46109019 | Msa1157230:exon | 30.0% |
| !! | TCTAATTTTGTTATGGTTGC+AGG | + | chr7_4:46109356-46109375 | Msa1157230:intron | 30.0% |
| CGATCAAATTTCAATTAGGT+TGG | + | chr7_4:46109512-46109531 | Msa1157230:intron | 30.0% | |
| TTTATGTGTATTTCAGGACA+AGG | + | chr7_4:46109652-46109671 | Msa1157230:intron | 30.0% | |
| TGATGCAGAAAAGAAGAAAA+TGG | + | chr7_4:46109688-46109707 | Msa1157230:CDS | 30.0% | |
| GAAGAAAATGGAATATACGA+AGG | + | chr7_4:46109700-46109719 | Msa1157230:CDS | 30.0% | |
| TTTGATGTTCTGATTTCACT+TGG | + | chr7_4:46109825-46109844 | Msa1157230:intron | 30.0% | |
| ! | GTTAATATTGATGGTTGTGT+TGG | + | chr7_4:46110082-46110101 | Msa1157230:intron | 30.0% |
| !! | TGTTTATGTACTTTAGGATG+AGG | + | chr7_4:46110122-46110141 | Msa1157230:intron | 30.0% |
| CTTACCTCTTTGTTAATCTT+TGG | + | chr7_4:46110197-46110216 | Msa1157230:intron | 30.0% | |
| GGTTCAAAGATACATAGAAA+AGG | - | chr7_4:46110257-46110276 | None:intergenic | 30.0% | |
| AGAGATAATTGAAGGATACA+TGG | - | chr7_4:46110363-46110382 | None:intergenic | 30.0% | |
| !! | TCTCTTTTGAAAACTTGAGA+AGG | + | chr7_4:46110378-46110397 | Msa1157230:intron | 30.0% |
| TGTCAAATGTTTGTTTGTGT+TGG | + | chr7_4:46110442-46110461 | Msa1157230:intron | 30.0% | |
| TAAGCCAAAGATTAATGAAG+AGG | + | chr7_4:46110532-46110551 | Msa1157230:intron | 30.0% | |
| GGTGGAAGAATATGTTATTA+CGG | + | chr7_4:46110553-46110572 | Msa1157230:intron | 30.0% | |
| GTGTGTTTATTCACTTTGTT+TGG | + | chr7_4:46110575-46110594 | Msa1157230:intron | 30.0% | |
| !! | GCATTTTGACAAATTTGTCA+TGG | + | chr7_4:46110612-46110631 | Msa1157230:intron | 30.0% |
| TAAAAATTCATTGGCCGATT+TGG | - | chr7_4:46110653-46110672 | None:intergenic | 30.0% | |
| TTAGTGCTATCACAATATCT+TGG | + | chr7_4:46110675-46110694 | Msa1157230:intron | 30.0% | |
| TTAGGTCGAAAATGAGTTAA+TGG | + | chr7_4:46110759-46110778 | Msa1157230:intron | 30.0% | |
| TGTGAAATGTAAAGGAATGA+TGG | + | chr7_4:46110912-46110931 | Msa1157230:intron | 30.0% | |
| GTGGCAATTATTCACTAATT+TGG | + | chr7_4:46111200-46111219 | Msa1157230:intron | 30.0% | |
| GCAATTATTCACTAATTTGG+TGG | + | chr7_4:46111203-46111222 | Msa1157230:intron | 30.0% | |
| TATCAGTGTTAATGGTCTAA+AGG | + | chr7_4:46111227-46111246 | Msa1157230:intron | 30.0% | |
| ATGACAACACAAATAAGTGT+TGG | - | chr7_4:46111257-46111276 | None:intergenic | 30.0% | |
| AAAGTAGATGAAACCAACAT+GGG | - | chr7_4:46111311-46111330 | None:intergenic | 30.0% | |
| AAAAGTAGATGAAACCAACA+TGG | - | chr7_4:46111312-46111331 | None:intergenic | 30.0% | |
| CATGTGAACAAGAAAAATGA+TGG | - | chr7_4:46111412-46111431 | None:intergenic | 30.0% | |
| ATTATACCTACGAGACTATT+AGG | + | chr7_4:46111458-46111477 | Msa1157230:intron | 30.0% | |
| ATAATTCCTAATAGTCTCGT+AGG | - | chr7_4:46111467-46111486 | None:intergenic | 30.0% | |
| GACTATTAGGAATTATCGAT+TGG | + | chr7_4:46111471-46111490 | Msa1157230:intron | 30.0% | |
| ! | TTGACTTTGGTTTCAAAACT+TGG | - | chr7_4:46111531-46111550 | None:intergenic | 30.0% |
| ATTAACAGATACCTACATCA+AGG | + | chr7_4:46111568-46111587 | Msa1157230:intron | 30.0% | |
| GACTAAGAAGGTAAAACAAA+TGG | + | chr7_4:46111590-46111609 | Msa1157230:CDS | 30.0% | |
| AAGAAGGTAAAACAAATGGT+CGG | + | chr7_4:46111594-46111613 | Msa1157230:CDS | 30.0% | |
| AAGAATGTTATACCTCAGAT+GGG | - | chr7_4:46111638-46111657 | None:intergenic | 30.0% | |
| AAAGAATGTTATACCTCAGA+TGG | - | chr7_4:46111639-46111658 | None:intergenic | 30.0% | |
| CCTGGAAGAAAAAAACAAAT+TGG | - | chr7_4:46111704-46111723 | None:intergenic | 30.0% | |
| !!! | CCAATTTGTTTTTTTCTTCC+AGG | + | chr7_4:46111701-46111720 | Msa1157230:intron | 30.0% |
| TTCTGCAAGATATAAACCAA+GGG | - | chr7_4:46112064-46112083 | None:intergenic | 30.0% | |
| TTTCTGCAAGATATAAACCA+AGG | - | chr7_4:46112065-46112084 | None:intergenic | 30.0% | |
| TATGGCTGTCTTTATCAATT+CGG | + | chr7_4:46112816-46112835 | Msa1157230:CDS | 30.0% | |
| TTGACTAAGAAAGAACTTGA+GGG | + | chr7_4:46112937-46112956 | Msa1157230:CDS | 30.0% | |
| ! | TCAAGTTTAAAGTACGTCAA+GGG | - | chr7_4:46112993-46113012 | None:intergenic | 30.0% |
| ! | TTCAAGTTTAAAGTACGTCA+AGG | - | chr7_4:46112994-46113013 | None:intergenic | 30.0% |
| !! | CAATTGGCTAGTTTAATACA+AGG | + | chr7_4:46113039-46113058 | Msa1157230:three_prime_UTR | 30.0% |
| AAAACAAAATCTACCGATCA+AGG | - | chr7_4:46113080-46113099 | None:intergenic | 30.0% | |
| ATTGTAGAGAGAAAAGAGTG+AGG | - | chr7_4:46108995-46109014 | None:intergenic | 35.0% | |
| AAAAGAAAGAAAGGAGACTG+AGG | - | chr7_4:46109067-46109086 | None:intergenic | 35.0% | |
| AACTGCTTCGAATGAGAATT+TGG | + | chr7_4:46109138-46109157 | Msa1157230:intron | 35.0% | |
| ! | TTGACACATGTGATTTTCAC+TGG | + | chr7_4:46109242-46109261 | Msa1157230:intron | 35.0% |
| ! | ATGTGATTTTCACTGGAAGT+TGG | + | chr7_4:46109249-46109268 | Msa1157230:intron | 35.0% |
| ! | TGTGATTTTCACTGGAAGTT+GGG | + | chr7_4:46109250-46109269 | Msa1157230:intron | 35.0% |
| GTTACAGATTTCCATGTGTA+AGG | - | chr7_4:46109289-46109308 | None:intergenic | 35.0% | |
| GGAAATCTGTAACATTGTTG+CGG | + | chr7_4:46109296-46109315 | Msa1157230:intron | 35.0% | |
| ACAGAGACGTATATATTGTG+TGG | - | chr7_4:46109415-46109434 | None:intergenic | 35.0% | |
| ACACAATATATACGTCTCTG+TGG | + | chr7_4:46109414-46109433 | Msa1157230:CDS | 35.0% | |
| !!! | CATCGATTTCCATTTTTCAC+CGG | - | chr7_4:46109546-46109565 | None:intergenic | 35.0% |
| TTGCGGTTTATGTGTATTTC+AGG | + | chr7_4:46109646-46109665 | Msa1157230:intron | 35.0% | |
| ! | TTTTCTGCATCAGCAATGTA+AGG | - | chr7_4:46109680-46109699 | None:intergenic | 35.0% |
| !! | CTTCTTATTGTAGGCATTGA+TGG | - | chr7_4:46109726-46109745 | None:intergenic | 35.0% |
| CATCAATGCCTACAATAAGA+AGG | + | chr7_4:46109724-46109743 | Msa1157230:CDS | 35.0% | |
| CATCAGAACCTTCTTATTGT+AGG | - | chr7_4:46109735-46109754 | None:intergenic | 35.0% | |
| ! | CTACAATAAGAAGGTTCTGA+TGG | + | chr7_4:46109733-46109752 | Msa1157230:CDS | 35.0% |
| GGCCTGCAATAATACTAATT+TGG | + | chr7_4:46109754-46109773 | Msa1157230:CDS | 35.0% | |
| !! | TTTTCGATGTATTAGGTTGC+CGG | + | chr7_4:46109885-46109904 | Msa1157230:intron | 35.0% |
| !!! | TCTGCTAGAGGATTTTTTTC+CGG | - | chr7_4:46109907-46109926 | None:intergenic | 35.0% |
| TGTTTGAGTGTTTCCTTGTT+AGG | + | chr7_4:46110058-46110077 | Msa1157230:intron | 35.0% | |
| AACAAAGAGGTAAGAGCAAA+TGG | - | chr7_4:46110191-46110210 | None:intergenic | 35.0% | |
| CAGTCCAAAGATTAACAAAG+AGG | - | chr7_4:46110204-46110223 | None:intergenic | 35.0% | |
| ACATTGTTAATGGCGAACAA+GGG | - | chr7_4:46110290-46110309 | None:intergenic | 35.0% | |
| AACATTGTTAATGGCGAACA+AGG | - | chr7_4:46110291-46110310 | None:intergenic | 35.0% | |
| TCCACCTCTTCATTAATCTT+TGG | - | chr7_4:46110539-46110558 | None:intergenic | 35.0% | |
| ! | ATGGACTGTGCTAAAAAGTT+AGG | + | chr7_4:46110931-46110950 | Msa1157230:intron | 35.0% |
| TGGACTGTGCTAAAAAGTTA+GGG | + | chr7_4:46110932-46110951 | Msa1157230:intron | 35.0% | |
| ! | TTGGTGGTTATCAGTGTTAA+TGG | + | chr7_4:46111219-46111238 | Msa1157230:intron | 35.0% |
| ! | TCGAATTTGCTTGTACTACA+TGG | + | chr7_4:46111278-46111297 | Msa1157230:intron | 35.0% |
| !! | ACTTGGAAGGTATCTGTTAA+TGG | - | chr7_4:46111514-46111533 | None:intergenic | 35.0% |
| ! | CTTTGGTTTCAAAACTTGGA+AGG | - | chr7_4:46111527-46111546 | None:intergenic | 35.0% |
| !!! | TGTTTTTTTCTTCCAGGTGT+TGG | + | chr7_4:46111707-46111726 | Msa1157230:intron | 35.0% |
| AGATAGAAATTTCCAACACC+TGG | - | chr7_4:46111722-46111741 | None:intergenic | 35.0% | |
| ATAGTTCTTGGGGAAAATCA+TGG | - | chr7_4:46111950-46111969 | None:intergenic | 35.0% | |
| ! | ATTTTCCCCAAGAACTATGT+TGG | + | chr7_4:46111952-46111971 | Msa1157230:intron | 35.0% |
| ACATCACCAACATAGTTCTT+GGG | - | chr7_4:46111961-46111980 | None:intergenic | 35.0% | |
| AACATCACCAACATAGTTCT+TGG | - | chr7_4:46111962-46111981 | None:intergenic | 35.0% | |
| ATGGAGAGACATTTGTTTGT+GGG | - | chr7_4:46112147-46112166 | None:intergenic | 35.0% | |
| TTCATGACTACATCTACAGA+TGG | - | chr7_4:46112166-46112185 | None:intergenic | 35.0% | |
| ATCTGTAGATGTAGTCATGA+AGG | + | chr7_4:46112165-46112184 | Msa1157230:CDS | 35.0% | |
| ! | TTTCTTTGGGAATGACTACT+TGG | - | chr7_4:46112192-46112211 | None:intergenic | 35.0% |
| AGTAGTCATTCCCAAAGAAA+TGG | + | chr7_4:46112192-46112211 | Msa1157230:CDS | 35.0% | |
| ! | CAGTTCTTTGAAAAGTTCCA+TGG | - | chr7_4:46112410-46112429 | None:intergenic | 35.0% |
| !! | TGTTAAGAAAGCATTCTTCG+AGG | - | chr7_4:46112593-46112612 | None:intergenic | 35.0% |
| !! | CTTTTTGTTCTTTGAGAGGA+AGG | - | chr7_4:46112675-46112694 | None:intergenic | 35.0% |
| GGTAAATAAAAAGCAGCAAG+AGG | + | chr7_4:46112705-46112724 | Msa1157230:CDS | 35.0% | |
| GTTGACTAAGAAAGAACTTG+AGG | + | chr7_4:46112936-46112955 | Msa1157230:CDS | 35.0% | |
| ! | CAAGTTTAAAGTACGTCAAG+GGG | - | chr7_4:46112992-46113011 | None:intergenic | 35.0% |
| ATTGGCACAACAAACAACAT+TGG | - | chr7_4:46113131-46113150 | None:intergenic | 35.0% | |
| !! | TGTTGTTTGTTGTGCCAATT+TGG | + | chr7_4:46113132-46113151 | Msa1157230:three_prime_UTR | 35.0% |
| ATCGGCTAAGGTAAATTACT+AGG | - | chr7_4:46113160-46113179 | None:intergenic | 35.0% | |
| GTAATTTACCTTAGCCGATA+TGG | + | chr7_4:46113161-46113180 | Msa1157230:three_prime_UTR | 35.0% | |
| ! | AATAGTAACCATATCGGCTA+AGG | - | chr7_4:46113172-46113191 | None:intergenic | 35.0% |
| AGAGAAAAGAGTGAGGAAGA+AGG | - | chr7_4:46108988-46109007 | None:intergenic | 40.0% | |
| ! | TATGAAGCACTCCTTACACA+TGG | + | chr7_4:46109275-46109294 | Msa1157230:intron | 40.0% |
| !! | AATTAGGTTGGTAAAGCTGC+CGG | + | chr7_4:46109524-46109543 | Msa1157230:intron | 40.0% |
| TGTTCTGATTTCACTTGGAC+TGG | + | chr7_4:46109830-46109849 | Msa1157230:intron | 40.0% | |
| !! | GACAGAACTTTTTCTGCTAG+AGG | - | chr7_4:46109919-46109938 | None:intergenic | 40.0% |
| !! | ACTTTAGGATGAGGATGATG+AGG | + | chr7_4:46110131-46110150 | Msa1157230:intron | 40.0% |
| !! | CTTTAGGATGAGGATGATGA+GGG | + | chr7_4:46110132-46110151 | Msa1157230:intron | 40.0% |
| GCAGATTGTGTAATGAAGGA+AGG | - | chr7_4:46110233-46110252 | None:intergenic | 40.0% | |
| AGGTGCAGATTGTGTAATGA+AGG | - | chr7_4:46110237-46110256 | None:intergenic | 40.0% | |
| TGAGAAATGGTGTGTTGCAT+TGG | + | chr7_4:46110507-46110526 | Msa1157230:intron | 40.0% | |
| GCCAAAGATTAATGAAGAGG+TGG | + | chr7_4:46110535-46110554 | Msa1157230:intron | 40.0% | |
| AACTGTGAAGTGTGCCAAAT+CGG | + | chr7_4:46110636-46110655 | Msa1157230:intron | 40.0% | |
| AAAAAGTTAGGGACTCGACA+TGG | + | chr7_4:46110943-46110962 | Msa1157230:intron | 40.0% | |
| ACCTACATCAAGGACTAAGA+AGG | + | chr7_4:46111578-46111597 | Msa1157230:CDS | 40.0% | |
| ACCTTCTTAGTCCTTGATGT+AGG | - | chr7_4:46111582-46111601 | None:intergenic | 40.0% | |
| TCATTAGGAGAGGAAGTTGA+GGG | - | chr7_4:46111747-46111766 | None:intergenic | 40.0% | |
| AAAGATTGAGTCAGAGTAGC+AGG | - | chr7_4:46111825-46111844 | None:intergenic | 40.0% | |
| TGCTACTCTGACTCAATCTT+TGG | + | chr7_4:46111824-46111843 | Msa1157230:CDS | 40.0% | |
| TCAATCTTTGGATTCGAGAC+AGG | + | chr7_4:46111836-46111855 | Msa1157230:CDS | 40.0% | |
| CATCACCAACATAGTTCTTG+GGG | - | chr7_4:46111960-46111979 | None:intergenic | 40.0% | |
| CGTTCAAACAGTTACTGTTG+AGG | + | chr7_4:46111987-46112006 | Msa1157230:CDS | 40.0% | |
| CAGTTACTGTTGAGGTAATG+TGG | + | chr7_4:46111995-46112014 | Msa1157230:intron | 40.0% | |
| AAAGGCTGAACTTCTAATGC+CGG | - | chr7_4:46112094-46112113 | None:intergenic | 40.0% | |
| AACACGACAGGATCAGAAAT+CGG | - | chr7_4:46112118-46112137 | None:intergenic | 40.0% | |
| GATGGAGAGACATTTGTTTG+TGG | - | chr7_4:46112148-46112167 | None:intergenic | 40.0% | |
| TCTGACGTGACCATTTCTTT+GGG | - | chr7_4:46112205-46112224 | None:intergenic | 40.0% | |
| TTCTGACGTGACCATTTCTT+TGG | - | chr7_4:46112206-46112225 | None:intergenic | 40.0% | |
| AAAGAAATGGTCACGTCAGA+AGG | + | chr7_4:46112205-46112224 | Msa1157230:CDS | 40.0% | |
| AAGAAATGGTCACGTCAGAA+GGG | + | chr7_4:46112206-46112225 | Msa1157230:CDS | 40.0% | |
| AGGTTAAGCAAGCGTGTAAT+GGG | + | chr7_4:46112281-46112300 | Msa1157230:CDS | 40.0% | |
| TGAGCAACTCAAGAAGCAAT+TGG | + | chr7_4:46112756-46112775 | Msa1157230:CDS | 40.0% | |
| ATCAGACGGTGAAAACTCTA+AGG | + | chr7_4:46112884-46112903 | Msa1157230:CDS | 40.0% | |
| ATTGGGTAATCACCAACAAC+AGG | - | chr7_4:46112963-46112982 | None:intergenic | 40.0% | |
| !! | CAACATTGGCTTCTATCTAG+TGG | - | chr7_4:46113117-46113136 | None:intergenic | 40.0% |
| CTTCAGAGTGAGGTTCAAGA+AGG | + | chr7_4:46109384-46109403 | Msa1157230:CDS | 45.0% | |
| GTAAAGCTGCCGGTGAAAAA+TGG | + | chr7_4:46109534-46109553 | Msa1157230:CDS | 45.0% | |
| ATACGCACGTAAGGTCTCAT+AGG | - | chr7_4:46110717-46110736 | None:intergenic | 45.0% | |
| CACATACTCATACGCACGTA+AGG | - | chr7_4:46110726-46110745 | None:intergenic | 45.0% | |
| ! | ACTGTAAAAAGCGCGAAAGC+AGG | + | chr7_4:46110804-46110823 | Msa1157230:intron | 45.0% |
| GTGAATAATTGCCACGAGTG+TGG | - | chr7_4:46111195-46111214 | None:intergenic | 45.0% | |
| ATTAGGAGAGGAAGTTGAGG+GGG | - | chr7_4:46111745-46111764 | None:intergenic | 45.0% | |
| CATTAGGAGAGGAAGTTGAG+GGG | - | chr7_4:46111746-46111765 | None:intergenic | 45.0% | |
| CTCATTAGGAGAGGAAGTTG+AGG | - | chr7_4:46111748-46111767 | None:intergenic | 45.0% | |
| TTCGACTGGACTTGGATTTC+AGG | - | chr7_4:46111783-46111802 | None:intergenic | 45.0% | |
| TTACGGACATGTCTAACCCT+TGG | + | chr7_4:46112045-46112064 | Msa1157230:intron | 45.0% | |
| TATCTTGCAGAAAGTTCCGC+CGG | + | chr7_4:46112072-46112091 | Msa1157230:intron | 45.0% | |
| ACAGGATCAGAAATCGGCAA+AGG | - | chr7_4:46112112-46112131 | None:intergenic | 45.0% | |
| AGAAATGGTCACGTCAGAAG+GGG | + | chr7_4:46112207-46112226 | Msa1157230:CDS | 45.0% | |
| TTCACCCTGATCAAGATCCA+AGG | + | chr7_4:46112242-46112261 | Msa1157230:CDS | 45.0% | |
| TCACCCTGATCAAGATCCAA+GGG | + | chr7_4:46112243-46112262 | Msa1157230:CDS | 45.0% | |
| CATCCCTTGGATCTTGATCA+GGG | - | chr7_4:46112249-46112268 | None:intergenic | 45.0% | |
| TCATCCCTTGGATCTTGATC+AGG | - | chr7_4:46112250-46112269 | None:intergenic | 45.0% | |
| CTTGCTTAACCTGGTGAAGT+AGG | - | chr7_4:46112273-46112292 | None:intergenic | 45.0% | |
| CATTACACGCTTGCTTAACC+TGG | - | chr7_4:46112282-46112301 | None:intergenic | 45.0% | |
| CAGGTTAAGCAAGCGTGTAA+TGG | + | chr7_4:46112280-46112299 | Msa1157230:CDS | 45.0% | |
| GGTTAAGCAAGCGTGTAATG+GGG | + | chr7_4:46112282-46112301 | Msa1157230:CDS | 45.0% | |
| AACGAAAGCAAGTCATCTGC+GGG | - | chr7_4:46112325-46112344 | None:intergenic | 45.0% | |
| CAACGAAAGCAAGTCATCTG+CGG | - | chr7_4:46112326-46112345 | None:intergenic | 45.0% | |
| CTACAGCTTCTGTGTTTGCT+GGG | + | chr7_4:46112362-46112381 | Msa1157230:CDS | 45.0% | |
| TGGGCTTGATTCTAGTGACT+TGG | + | chr7_4:46112381-46112400 | Msa1157230:CDS | 45.0% | |
| ! | TTCTAGTGACTTGGAAGCCA+TGG | + | chr7_4:46112390-46112409 | Msa1157230:CDS | 45.0% |
| GAGACTAATGTCGAAGCCAT+TGG | + | chr7_4:46112432-46112451 | Msa1157230:CDS | 45.0% | |
| ! | TTTCAACTAGCCTCCTCATC+TGG | - | chr7_4:46112489-46112508 | None:intergenic | 45.0% |
| AACTCAAGCCTCTCAAGCAA+CGG | + | chr7_4:46112509-46112528 | Msa1157230:CDS | 45.0% | |
| TGACCTGCTCAAGTGTACTT+TGG | - | chr7_4:46112549-46112568 | None:intergenic | 45.0% | |
| AGCATTCTTCGAGGCATGAA+GGG | - | chr7_4:46112584-46112603 | None:intergenic | 45.0% | |
| AAGCATTCTTCGAGGCATGA+AGG | - | chr7_4:46112585-46112604 | None:intergenic | 45.0% | |
| CTTCTTCACCAAGTCCTCTT+TGG | - | chr7_4:46112650-46112669 | None:intergenic | 45.0% | |
| AAAGCAGCAAGAGGCAGTTA+AGG | + | chr7_4:46112714-46112733 | Msa1157230:CDS | 45.0% | |
| AAAGACAGCCATACCTGTGT+TGG | - | chr7_4:46112809-46112828 | None:intergenic | 45.0% | |
| CTGATTCACCTCATCACGAA+GGG | - | chr7_4:46112869-46112888 | None:intergenic | 45.0% | |
| TCTGATTCACCTCATCACGA+AGG | - | chr7_4:46112870-46112889 | None:intergenic | 45.0% | |
| TCGTGATGAGGTGAATCAGA+CGG | + | chr7_4:46112870-46112889 | Msa1157230:CDS | 45.0% | |
| TAAAGTACGTCAAGGGGAAC+TGG | - | chr7_4:46112986-46113005 | None:intergenic | 45.0% | |
| !! | GAGTGAGGAAGAAGGTACTG+TGG | - | chr7_4:46108980-46108999 | None:intergenic | 50.0% |
| AAAGGAGACTGAGGCCTCTT+CGG | - | chr7_4:46109058-46109077 | None:intergenic | 50.0% | |
| TGACGACGACTACGACAATG+AGG | + | chr7_4:46109989-46110008 | Msa1157230:CDS | 50.0% | |
| ACATGGTTGTCGACCCATGT+TGG | + | chr7_4:46111295-46111314 | Msa1157230:intron | 50.0% | |
| TACCTCAGATGGGCAACCTT+GGG | - | chr7_4:46111628-46111647 | None:intergenic | 50.0% | |
| ATACCTCAGATGGGCAACCT+TGG | - | chr7_4:46111629-46111648 | None:intergenic | 50.0% | |
| CAGCGAAGACTCATTAGGAG+AGG | - | chr7_4:46111757-46111776 | None:intergenic | 50.0% | |
| CAAAAGGCTTCGACTGGACT+TGG | - | chr7_4:46111791-46111810 | None:intergenic | 50.0% | |
| ! | CAAGTCCAGTCGAAGCCTTT+TGG | + | chr7_4:46111789-46111808 | Msa1157230:CDS | 50.0% |
| GAAATGGTCACGTCAGAAGG+GGG | + | chr7_4:46112208-46112227 | Msa1157230:CDS | 50.0% | |
| CTTGATCAGGGTGAACATCC+TGG | - | chr7_4:46112237-46112256 | None:intergenic | 50.0% | |
| TGGTGAAGTAGGTCATCCCT+TGG | - | chr7_4:46112262-46112281 | None:intergenic | 50.0% | |
| AAGGGATGACCTACTTCACC+AGG | + | chr7_4:46112261-46112280 | Msa1157230:CDS | 50.0% | |
| ACGAAAGCAAGTCATCTGCG+GGG | - | chr7_4:46112324-46112343 | None:intergenic | 50.0% | |
| CCAGCAAACACAGAAGCTGT+AGG | - | chr7_4:46112364-46112383 | None:intergenic | 50.0% | |
| CCTACAGCTTCTGTGTTTGC+TGG | + | chr7_4:46112361-46112380 | Msa1157230:CDS | 50.0% | |
| AGTGTACTTTGGCCTGAGAG+AGG | - | chr7_4:46112538-46112557 | None:intergenic | 50.0% | |
| AGGCCAAAGTACACTTGAGC+AGG | + | chr7_4:46112543-46112562 | Msa1157230:CDS | 50.0% | |
| TTGCTCGTAAACAGGAAGGG+TGG | - | chr7_4:46112617-46112636 | None:intergenic | 50.0% | |
| CGCTTGCTCGTAAACAGGAA+GGG | - | chr7_4:46112620-46112639 | None:intergenic | 50.0% | |
| CCTTCCTGTTTACGAGCAAG+CGG | + | chr7_4:46112618-46112637 | Msa1157230:CDS | 50.0% | |
| TTCACCGCTTGCTCGTAAAC+AGG | - | chr7_4:46112625-46112644 | None:intergenic | 50.0% | |
| GGTGAATGCCAAAGAGGACT+TGG | + | chr7_4:46112639-46112658 | Msa1157230:CDS | 50.0% | |
| GCAAGAGGCAGTTAAGGTCA+AGG | + | chr7_4:46112720-46112739 | Msa1157230:CDS | 50.0% | |
| !! | GAAGCAATTGGCCTTAGCTG+AGG | + | chr7_4:46112768-46112787 | Msa1157230:CDS | 50.0% |
| GAACTAGCTGAAGCCAACAC+AGG | + | chr7_4:46112793-46112812 | Msa1157230:CDS | 50.0% | |
| AGCTGAAGCCAACACAGGTA+TGG | + | chr7_4:46112798-46112817 | Msa1157230:CDS | 50.0% | |
| CATCAATGCCCTTCGTGATG+AGG | + | chr7_4:46112858-46112877 | Msa1157230:CDS | 50.0% | |
| AGAACTTGAGGGCCTGTTGT+TGG | + | chr7_4:46112948-46112967 | Msa1157230:CDS | 50.0% | |
| ACGTCAAGGGGAACTGGATT+GGG | - | chr7_4:46112980-46112999 | None:intergenic | 50.0% | |
| TACGTCAAGGGGAACTGGAT+TGG | - | chr7_4:46112981-46113000 | None:intergenic | 50.0% | |
| CTGATCCATCGAAGCCGAAG+AGG | + | chr7_4:46109041-46109060 | Msa1157230:CDS | 55.0% | |
| GCAGGTCTGACTTCAGAGTG+AGG | + | chr7_4:46109374-46109393 | Msa1157230:intron | 55.0% | |
| CGACGACTACGACAATGAGG+AGG | + | chr7_4:46109992-46110011 | Msa1157230:CDS | 55.0% | |
| CGACTACGACAATGAGGAGG+AGG | + | chr7_4:46109995-46110014 | Msa1157230:CDS | 55.0% | |
| CTACGACAATGAGGAGGAGG+AGG | + | chr7_4:46109998-46110017 | Msa1157230:CDS | 55.0% | |
| GCGAACAAGGGCAAACGAGA+TGG | - | chr7_4:46110278-46110297 | None:intergenic | 55.0% | |
| CTAGGTAACTGCCCACTACG+TGG | + | chr7_4:46111165-46111184 | Msa1157230:intron | 55.0% | |
| GTAACTGCCCACTACGTGGA+AGG | + | chr7_4:46111169-46111188 | Msa1157230:intron | 55.0% | |
| AGTGTGGCCTTCCACGTAGT+GGG | - | chr7_4:46111179-46111198 | None:intergenic | 55.0% | |
| GGCGACAGCGAAGACTCATT+AGG | - | chr7_4:46111762-46111781 | None:intergenic | 55.0% | |
| GGCTGAACTTCTAATGCCGG+CGG | - | chr7_4:46112091-46112110 | None:intergenic | 55.0% | |
| TGTGGGTTTGCGAACACGAC+AGG | - | chr7_4:46112130-46112149 | None:intergenic | 55.0% | |
| ! | CAAGCGTGTAATGGGGACAC+TGG | + | chr7_4:46112289-46112308 | Msa1157230:CDS | 55.0% |
| TCAGCAGAAGCGACGTCCAA+TGG | - | chr7_4:46112451-46112470 | None:intergenic | 55.0% | |
| CCTCATCTGGTCGAATGCTG+AGG | - | chr7_4:46112476-46112495 | None:intergenic | 55.0% | |
| CCTCAGCATTCGACCAGATG+AGG | + | chr7_4:46112473-46112492 | Msa1157230:CDS | 55.0% | |
| CAGCATTCGACCAGATGAGG+AGG | + | chr7_4:46112476-46112495 | Msa1157230:CDS | 55.0% | |
| AGAGGCAACCGTTGCTTGAG+AGG | - | chr7_4:46112520-46112539 | None:intergenic | 55.0% | |
| AAGCAACGGTTGCCTCTCTC+AGG | + | chr7_4:46112523-46112542 | Msa1157230:CDS | 55.0% | |
| CCGCTTGCTCGTAAACAGGA+AGG | - | chr7_4:46112621-46112640 | None:intergenic | 55.0% | |
| GCAAGCGGTGAATGCCAAAG+AGG | + | chr7_4:46112633-46112652 | Msa1157230:CDS | 55.0% | |
| !! | GCAATTGGCCTTAGCTGAGG+CGG | + | chr7_4:46112771-46112790 | Msa1157230:CDS | 55.0% |
| AGCTAGTTCCGCCTCAGCTA+AGG | - | chr7_4:46112782-46112801 | None:intergenic | 55.0% | |
| TGAGGCCTCTTCGGCTTCGA+TGG | - | chr7_4:46109049-46109068 | None:intergenic | 60.0% | |
| CGACAATGAGGAGGAGGAGG+AGG | + | chr7_4:46110001-46110020 | Msa1157230:CDS | 60.0% | |
| CAATGAGGAGGAGGAGGAGG+AGG | + | chr7_4:46110004-46110023 | Msa1157230:CDS | 60.0% | |
| GGAGGAGGAGGAGGATGATG+AGG | + | chr7_4:46110013-46110032 | Msa1157230:CDS | 60.0% | |
| GAGTGTGGCCTTCCACGTAG+TGG | - | chr7_4:46111180-46111199 | None:intergenic | 60.0% | |
| TACGTGGAAGGCCACACTCG+TGG | + | chr7_4:46111181-46111200 | Msa1157230:intron | 60.0% | |
| ATGGTCGGCACTTCCACCCA+AGG | + | chr7_4:46111609-46111628 | Msa1157230:CDS | 60.0% | |
| CTCAGATGGGCAACCTTGGG+TGG | - | chr7_4:46111625-46111644 | None:intergenic | 60.0% | |
| CACCCAAGGTTGCCCATCTG+AGG | + | chr7_4:46111623-46111642 | Msa1157230:CDS | 60.0% | |
| GTGGGCCAAAAGGCTTCGAC+TGG | - | chr7_4:46111797-46111816 | None:intergenic | 60.0% | |
| ! | GTCGAAGCCTTTTGGCCCAC+AGG | + | chr7_4:46111797-46111816 | Msa1157230:CDS | 60.0% |
| TCAGAGTAGCAGGCGCCTGT+GGG | - | chr7_4:46111815-46111834 | None:intergenic | 60.0% | |
| CACGTCAGAAGGGGGTTTCC+AGG | + | chr7_4:46112216-46112235 | Msa1157230:CDS | 60.0% | |
| GTCAGAGTAGCAGGCGCCTG+TGG | - | chr7_4:46111816-46111835 | None:intergenic | 65.0% | |
| GCAGGCGCCTGTGGGCCAAA+AGG | - | chr7_4:46111807-46111826 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 46108926 | 46113236 | 46108926 | ID=Msa1157230;Name=Msa1157230 |
| chr7_4 | mRNA | 46108926 | 46113236 | 46108926 | ID=Msa1157230-mRNA-1;Parent=Msa1157230;Name=Msa1157230-mRNA-1;_AED=0.05;_eAED=0.05;_QI=93|0.77|0.9|0.9|1|1|10|240|535 |
| chr7_4 | exon | 46108926 | 46109089 | 46108926 | ID=Msa1157230-mRNA-1:exon:12000;Parent=Msa1157230-mRNA-1 |
| chr7_4 | exon | 46109378 | 46109435 | 46109378 | ID=Msa1157230-mRNA-1:exon:12001;Parent=Msa1157230-mRNA-1 |
| chr7_4 | exon | 46109530 | 46109574 | 46109530 | ID=Msa1157230-mRNA-1:exon:12002;Parent=Msa1157230-mRNA-1 |
| chr7_4 | exon | 46109668 | 46109775 | 46109668 | ID=Msa1157230-mRNA-1:exon:12003;Parent=Msa1157230-mRNA-1 |
| chr7_4 | exon | 46109900 | 46110034 | 46109900 | ID=Msa1157230-mRNA-1:exon:12004;Parent=Msa1157230-mRNA-1 |
| chr7_4 | exon | 46110138 | 46110164 | 46110138 | ID=Msa1157230-mRNA-1:exon:12005;Parent=Msa1157230-mRNA-1 |
| chr7_4 | exon | 46111576 | 46111644 | 46111576 | ID=Msa1157230-mRNA-1:exon:12006;Parent=Msa1157230-mRNA-1 |
| chr7_4 | exon | 46111723 | 46111857 | 46111723 | ID=Msa1157230-mRNA-1:exon:12007;Parent=Msa1157230-mRNA-1 |
| chr7_4 | exon | 46111964 | 46112008 | 46111964 | ID=Msa1157230-mRNA-1:exon:12008;Parent=Msa1157230-mRNA-1 |
| chr7_4 | exon | 46112082 | 46113236 | 46112082 | ID=Msa1157230-mRNA-1:exon:12009;Parent=Msa1157230-mRNA-1 |
| chr7_4 | five_prime_UTR | 46108926 | 46109018 | 46108926 | ID=Msa1157230-mRNA-1:five_prime_utr;Parent=Msa1157230-mRNA-1 |
| chr7_4 | CDS | 46109019 | 46109089 | 46109019 | ID=Msa1157230-mRNA-1:cds;Parent=Msa1157230-mRNA-1 |
| chr7_4 | CDS | 46109378 | 46109435 | 46109378 | ID=Msa1157230-mRNA-1:cds;Parent=Msa1157230-mRNA-1 |
| chr7_4 | CDS | 46109530 | 46109574 | 46109530 | ID=Msa1157230-mRNA-1:cds;Parent=Msa1157230-mRNA-1 |
| chr7_4 | CDS | 46109668 | 46109775 | 46109668 | ID=Msa1157230-mRNA-1:cds;Parent=Msa1157230-mRNA-1 |
| chr7_4 | CDS | 46109900 | 46110034 | 46109900 | ID=Msa1157230-mRNA-1:cds;Parent=Msa1157230-mRNA-1 |
| chr7_4 | CDS | 46110138 | 46110164 | 46110138 | ID=Msa1157230-mRNA-1:cds;Parent=Msa1157230-mRNA-1 |
| chr7_4 | CDS | 46111576 | 46111644 | 46111576 | ID=Msa1157230-mRNA-1:cds;Parent=Msa1157230-mRNA-1 |
| chr7_4 | CDS | 46111723 | 46111857 | 46111723 | ID=Msa1157230-mRNA-1:cds;Parent=Msa1157230-mRNA-1 |
| chr7_4 | CDS | 46111964 | 46112008 | 46111964 | ID=Msa1157230-mRNA-1:cds;Parent=Msa1157230-mRNA-1 |
| chr7_4 | CDS | 46112082 | 46112996 | 46112082 | ID=Msa1157230-mRNA-1:cds;Parent=Msa1157230-mRNA-1 |
| chr7_4 | three_prime_UTR | 46112997 | 46113236 | 46112997 | ID=Msa1157230-mRNA-1:three_prime_utr;Parent=Msa1157230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
