Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1030510 | XP_003624428.1 | 97.816 | 412 | 9 | 0 | 1 | 412 | 1 | 412 | 0.0 | 830 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1030510 | G7KW46 | 97.816 | 412 | 9 | 0 | 1 | 412 | 1 | 412 | 0.0 | 830 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1030510 | Msa1157390 | 0.862569 | 4.620080e-64 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1030510 | MtrunA17_Chr7g0251521 | 97.816 | 412 | 9 | 0 | 1 | 412 | 1 | 412 | 0.0 | 830 |
| Msa1030510 | MtrunA17_Chr1g0188821 | 43.447 | 412 | 211 | 3 | 1 | 391 | 1 | 411 | 9.93e-114 | 339 |
| Msa1030510 | MtrunA17_Chr6g0482521 | 44.310 | 413 | 207 | 4 | 1 | 391 | 1 | 412 | 6.02e-109 | 327 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1030510 | AT5G14020.5 | 62.879 | 396 | 135 | 5 | 1 | 384 | 1 | 396 | 4.06e-175 | 495 |
| Msa1030510 | AT5G14020.4 | 62.879 | 396 | 135 | 5 | 1 | 384 | 1 | 396 | 4.06e-175 | 495 |
| Msa1030510 | AT5G14020.1 | 62.879 | 396 | 135 | 5 | 1 | 384 | 1 | 396 | 4.06e-175 | 495 |
| Msa1030510 | AT5G14020.3 | 60.933 | 343 | 122 | 5 | 1 | 331 | 1 | 343 | 2.00e-142 | 410 |
| Msa1030510 | AT5G14020.7 | 60.933 | 343 | 122 | 5 | 1 | 331 | 1 | 343 | 2.00e-142 | 410 |
| Msa1030510 | AT1G73390.7 | 42.373 | 413 | 218 | 3 | 1 | 394 | 1 | 412 | 3.19e-115 | 343 |
| Msa1030510 | AT1G73390.1 | 42.373 | 413 | 218 | 3 | 1 | 394 | 1 | 412 | 3.19e-115 | 343 |
| Msa1030510 | AT1G73390.3 | 42.373 | 413 | 218 | 3 | 1 | 394 | 1 | 412 | 3.19e-115 | 343 |
| Msa1030510 | AT1G73390.2 | 42.373 | 413 | 218 | 3 | 1 | 394 | 1 | 412 | 3.19e-115 | 343 |
| Msa1030510 | AT1G73390.6 | 42.373 | 413 | 218 | 3 | 1 | 394 | 1 | 412 | 3.19e-115 | 343 |
| Msa1030510 | AT1G73390.5 | 42.373 | 413 | 218 | 3 | 1 | 394 | 1 | 412 | 3.19e-115 | 343 |
| Msa1030510 | AT5G14020.2 | 59.028 | 288 | 106 | 5 | 1 | 276 | 1 | 288 | 1.00e-110 | 327 |
| Msa1030510 | AT5G14020.6 | 59.028 | 288 | 106 | 5 | 1 | 276 | 1 | 288 | 1.00e-110 | 327 |
| Msa1030510 | AT1G17940.3 | 44.089 | 406 | 206 | 4 | 1 | 386 | 1 | 405 | 1.97e-110 | 330 |
| Msa1030510 | AT1G17940.6 | 44.089 | 406 | 206 | 4 | 1 | 386 | 1 | 405 | 1.97e-110 | 330 |
| Msa1030510 | AT1G17940.5 | 44.089 | 406 | 206 | 4 | 1 | 386 | 1 | 405 | 1.97e-110 | 330 |
| Msa1030510 | AT1G17940.1 | 44.089 | 406 | 206 | 4 | 1 | 386 | 1 | 405 | 1.97e-110 | 330 |
| Msa1030510 | AT1G73390.4 | 42.398 | 342 | 178 | 2 | 1 | 323 | 1 | 342 | 8.13e-95 | 288 |
| Msa1030510 | AT1G17940.4 | 41.980 | 293 | 150 | 3 | 1 | 273 | 1 | 293 | 5.39e-71 | 227 |
| Msa1030510 | AT1G17940.2 | 41.077 | 297 | 155 | 3 | 1 | 277 | 1 | 297 | 1.81e-70 | 225 |
Find 88 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTATCATGTGTTCACTTTA+TGG | 0.109625 | 7_1:+64613142 | Msa1030510:CDS |
| GATCTTCAAAGAGCACTTAA+AGG | 0.201261 | 7_1:+64612399 | Msa1030510:CDS |
| GTTTAGGGCTTCTCCACTTT+GGG | 0.215700 | 7_1:+64615331 | Msa1030510:intron |
| ACCATTCAGACTCTGGATTC+AGG | 0.238038 | 7_1:+64613210 | Msa1030510:CDS |
| TCCCATGCTGCATCAATTTC+AGG | 0.267812 | 7_1:-64615628 | None:intergenic |
| TGTAATGATAATTGAAATTC+AGG | 0.304672 | 7_1:-64615586 | None:intergenic |
| CCAGATGTATGGATACCTTT+TGG | 0.327111 | 7_1:+64615406 | Msa1030510:CDS |
| TACTTCTTTGATGCAACTTC+AGG | 0.340688 | 7_1:-64615383 | None:intergenic |
| TGCTGCAGAAGAACTTCTTC+AGG | 0.344502 | 7_1:+64614935 | Msa1030510:CDS |
| ACTTCTTCAGGAAAGCAAAA+AGG | 0.352833 | 7_1:+64614947 | Msa1030510:CDS |
| GGATTCAGGGTTGTGTCTGC+AGG | 0.363702 | 7_1:+64613224 | Msa1030510:CDS |
| AACTACTAACCTTGGATTCA+AGG | 0.388201 | 7_1:-64614723 | None:intergenic |
| TGCACTGGAATTCTGATTGA+TGG | 0.392943 | 7_1:-64612372 | None:intergenic |
| TGTTTAGGGCTTCTCCACTT+TGG | 0.392981 | 7_1:+64615330 | Msa1030510:intron |
| AATTTATCAGCAAGATCCTT+TGG | 0.395348 | 7_1:-64612429 | None:intergenic |
| GGAGTTAACACAACTACTTC+AGG | 0.404554 | 7_1:-64612351 | None:intergenic |
| TCTCTAAGGTGTTCTTTCAA+TGG | 0.406270 | 7_1:-64615679 | None:intergenic |
| GTAGGTCTGGCAATGCTTGA+TGG | 0.409695 | 7_1:-64615564 | None:intergenic |
| GATGCTTCTTTCCATGCCCT+TGG | 0.413172 | 7_1:-64614678 | None:intergenic |
| CTGATAAATTGTCGTCTCTT+CGG | 0.417648 | 7_1:+64612442 | Msa1030510:CDS |
| AGCATCTCAGGTTCATCAAA+TGG | 0.430921 | 7_1:+64614695 | Msa1030510:CDS |
| TGACTTGCAGGAGGGTGTAT+TGG | 0.433527 | 7_1:+64613777 | Msa1030510:CDS |
| ACAGCTGATTTACTTTAGTC+AGG | 0.433860 | 7_1:+64614114 | Msa1030510:CDS |
| TCAGGCAATTCATACTCATC+TGG | 0.443765 | 7_1:-64615610 | None:intergenic |
| AATTGAAATTCAGGTAGGTC+TGG | 0.452129 | 7_1:-64615577 | None:intergenic |
| CTTCTGCTACCAACACAATC+TGG | 0.453891 | 7_1:-64612467 | None:intergenic |
| CCATTCAGACTCTGGATTCA+GGG | 0.455105 | 7_1:+64613211 | Msa1030510:CDS |
| GATTTGTTACTCAAAGCATC+AGG | 0.458157 | 7_1:+64613606 | Msa1030510:CDS |
| TCAAAGAAGTACCAGATGTA+TGG | 0.462433 | 7_1:+64615395 | Msa1030510:CDS |
| CCCTGAATCCAGAGTCTGAA+TGG | 0.465037 | 7_1:-64613211 | None:intergenic |
| CCAAAAGGTATCCATACATC+TGG | 0.465741 | 7_1:-64615406 | None:intergenic |
| CCAAGGGACCATTCAGACTC+TGG | 0.481723 | 7_1:+64613203 | Msa1030510:CDS |
| TTGGTTTCAGCTGGTATTTG+AGG | 0.482351 | 7_1:-64613660 | None:intergenic |
| GGCATGGAAAGAAGCATCTC+AGG | 0.490599 | 7_1:+64614683 | Msa1030510:CDS |
| GATACCTAGAGTTCTGTGTT+AGG | 0.492295 | 7_1:+64613628 | Msa1030510:CDS |
| TAAACATACTTGGTTTCAGC+TGG | 0.493250 | 7_1:-64613669 | None:intergenic |
| TATGCAGAATATGGTCTTGA+GGG | 0.494404 | 7_1:+64612951 | Msa1030510:intron |
| GCAGGCGTATCACTGCTTAT+CGG | 0.498362 | 7_1:+64614642 | Msa1030510:intron |
| CTTTGAAGATCAGATTGCAC+TGG | 0.502458 | 7_1:-64612387 | None:intergenic |
| ATGGAAATTCCTTGAATCCA+AGG | 0.508954 | 7_1:+64614714 | Msa1030510:CDS |
| TTTAGGGCTTCTCCACTTTG+GGG | 0.509280 | 7_1:+64615332 | Msa1030510:intron |
| CCAGAGTCTGAATGGTCCCT+TGG | 0.511678 | 7_1:-64613203 | None:intergenic |
| CTAATTGGACTTACTACGAA+AGG | 0.517004 | 7_1:+64612847 | Msa1030510:CDS |
| TCTAGCCGTGGACAGTCAAA+AGG | 0.531165 | 7_1:+64614057 | Msa1030510:CDS |
| TAGGGAACTGAGATTCAGCT+TGG | 0.533303 | 7_1:+64614034 | Msa1030510:intron |
| TATAAAGTGTATCAATCAGT+TGG | 0.534930 | 7_1:-64615715 | None:intergenic |
| TGTGACTTCAACCAAGGGCA+TGG | 0.535012 | 7_1:+64614667 | Msa1030510:CDS |
| TGCAAGACAAAAGCTCAAGC+AGG | 0.536936 | 7_1:-64614970 | None:intergenic |
| TATATCAAATGTGTGGTTTG+AGG | 0.541278 | 7_1:+64613118 | Msa1030510:CDS |
| CTGATTCACTGATGATTCCA+AGG | 0.544560 | 7_1:+64613186 | Msa1030510:CDS |
| TTTGCCTAACACAGAACTCT+AGG | 0.546492 | 7_1:-64613632 | None:intergenic |
| AGCTATTCAAGCACTAGGCC+AGG | 0.549512 | 7_1:+64613807 | Msa1030510:CDS |
| GCTACAGCTTACTACTACCA+TGG | 0.555200 | 7_1:+64614852 | Msa1030510:CDS |
| GTCTTGCAGCTCCAGTGACA+AGG | 0.563379 | 7_1:+64614985 | Msa1030510:CDS |
| GGCTATGCTGACACTGTCTG+AGG | 0.564225 | 7_1:+64613163 | Msa1030510:CDS |
| GCCTGAAATTGATGCAGCAT+GGG | 0.571004 | 7_1:+64615627 | Msa1030510:CDS |
| TCGGAATGTGACTTCAACCA+AGG | 0.572800 | 7_1:+64614661 | Msa1030510:CDS |
| GTGTTGGTAGCAGAAGATAC+CGG | 0.577339 | 7_1:+64612474 | Msa1030510:CDS |
| TTGTACTATCAGATAGCAAG+AGG | 0.583720 | 7_1:+64613574 | Msa1030510:intron |
| ATATGCAGAATATGGTCTTG+AGG | 0.587440 | 7_1:+64612950 | Msa1030510:intron |
| AGGGGCTAATAGAATTCAAG+TGG | 0.587919 | 7_1:+64612970 | Msa1030510:CDS |
| AGACACCGCAAGAATGTGAC+TGG | 0.589190 | 7_1:-64614904 | None:intergenic |
| CAACTTTGTCTGTGAAGAGG+AGG | 0.601511 | 7_1:+64614080 | Msa1030510:CDS |
| TCTTCGGAACCAGATTGTGT+TGG | 0.603938 | 7_1:+64612458 | Msa1030510:CDS |
| AAGGAAACATACCTTGTCAC+TGG | 0.605033 | 7_1:-64614996 | None:intergenic |
| AGGCAACTTTGTCTGTGAAG+AGG | 0.606025 | 7_1:+64614077 | Msa1030510:CDS |
| ACTTAAAGGATTAGTTCCAA+AGG | 0.610707 | 7_1:+64612413 | Msa1030510:CDS |
| ATGATAATTGAAATTCAGGT+AGG | 0.613899 | 7_1:-64615582 | None:intergenic |
| TGATTCACTGATGATTCCAA+GGG | 0.617124 | 7_1:+64613187 | Msa1030510:CDS |
| TGCCTGAAATTGATGCAGCA+TGG | 0.617807 | 7_1:+64615626 | Msa1030510:CDS |
| GCTATAGCTATTCAAGCACT+AGG | 0.620993 | 7_1:+64613802 | Msa1030510:CDS |
| CCATGGTCTGATCCTCGACA+AGG | 0.626066 | 7_1:+64614869 | Msa1030510:CDS |
| AGTTTCATGACACCCCAAAG+TGG | 0.628154 | 7_1:-64615344 | None:intergenic |
| TTGCCACATGACTTGCAGGA+GGG | 0.631405 | 7_1:+64613769 | Msa1030510:CDS |
| TTTGCCACATGACTTGCAGG+AGG | 0.634882 | 7_1:+64613768 | Msa1030510:CDS |
| ACCGCAAGAATGTGACTGGT+CGG | 0.637785 | 7_1:-64614900 | None:intergenic |
| TCGGTTCGTTACCCTTGTCG+AGG | 0.638329 | 7_1:-64614881 | None:intergenic |
| CGGAATGTGACTTCAACCAA+GGG | 0.644448 | 7_1:+64614662 | Msa1030510:CDS |
| GATTCAGCTTGGTCTAGCCG+TGG | 0.645658 | 7_1:+64614045 | Msa1030510:CDS |
| ACACCCTCCTGCAAGTCATG+TGG | 0.645674 | 7_1:-64613772 | None:intergenic |
| TTTGTCTGTGAAGAGGAGGA+TGG | 0.648873 | 7_1:+64614084 | Msa1030510:CDS |
| ACCGACCAGTCACATTCTTG+CGG | 0.664458 | 7_1:+64614899 | Msa1030510:CDS |
| TGTACTATCAGATAGCAAGA+GGG | 0.668745 | 7_1:+64613575 | Msa1030510:intron |
| ATGCAGAATATGGTCTTGAG+GGG | 0.671772 | 7_1:+64612952 | Msa1030510:intron |
| ATAGTAGTATATCAAATGTG+TGG | 0.676872 | 7_1:+64613111 | Msa1030510:CDS |
| GATCAGCTATAGCTGAATTG+CGG | 0.677916 | 7_1:+64612797 | Msa1030510:CDS |
| CATGGTCTGATCCTCGACAA+GGG | 0.693455 | 7_1:+64614870 | Msa1030510:CDS |
| CCTTGTCGAGGATCAGACCA+TGG | 0.693963 | 7_1:-64614869 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTATTTTCTAAAATTATTAT+CGG | - | chr7_1:64613416-64613435 | None:intergenic | 10.0% |
| !!! | AAATTTTATATAAACATACT+TGG | - | chr7_1:64613682-64613701 | None:intergenic | 10.0% |
| !! | TATAATTAAAGCTAAATAAA+AGG | - | chr7_1:64613968-64613987 | None:intergenic | 10.0% |
| !! | ATATTTCAATGAAATAATTA+AGG | - | chr7_1:64615500-64615519 | None:intergenic | 10.0% |
| !!! | ATTAATTGAAGATATTTTGA+TGG | + | chr7_1:64612741-64612760 | Msa1030510:intron | 15.0% |
| !! | GAAAATAAATCATATTTATC+TGG | - | chr7_1:64612886-64612905 | None:intergenic | 15.0% |
| !!! | TTATTTTTCATCATTGATTT+TGG | + | chr7_1:64613051-64613070 | Msa1030510:intron | 15.0% |
| !!! | ATAGCATTTTATAAATGTTT+TGG | + | chr7_1:64613869-64613888 | Msa1030510:intron | 15.0% |
| !! | AATGAAAAAAAGATATTGAT+TGG | - | chr7_1:64614579-64614598 | None:intergenic | 15.0% |
| !! | TATTATAAAAGAAAGTGATT+AGG | - | chr7_1:64614825-64614844 | None:intergenic | 15.0% |
| !!! | ATCACTTTCTTTTATAATAT+TGG | + | chr7_1:64614826-64614845 | Msa1030510:intron | 15.0% |
| !!! | TTACTTTGTTTATTTTGTTT+AGG | + | chr7_1:64615315-64615334 | Msa1030510:intron | 15.0% |
| !!! | TACTTTGTTTATTTTGTTTA+GGG | + | chr7_1:64615316-64615335 | Msa1030510:intron | 15.0% |
| !! | ATATAATGAGTATGTAAAAT+TGG | + | chr7_1:64615516-64615535 | Msa1030510:intron | 15.0% |
| !!! | TTTAGAGTTAATAGTGTTTT+TGG | + | chr7_1:64612522-64612541 | Msa1030510:intron | 20.0% |
| !!! | GTTTAAAAATTTGAGTTCTT+TGG | + | chr7_1:64612763-64612782 | Msa1030510:intron | 20.0% |
| !!! | TTTGGAATTTTTTTTAACCA+TGG | + | chr7_1:64613069-64613088 | Msa1030510:intron | 20.0% |
| !! | TGCTTAAAAAGCTTATATAT+CGG | - | chr7_1:64613257-64613276 | None:intergenic | 20.0% |
| !!! | ATTATTGACTGTTTATATTG+TGG | - | chr7_1:64613539-64613558 | None:intergenic | 20.0% |
| !! | ATATAAACAGTCAATAATCA+TGG | + | chr7_1:64613541-64613560 | Msa1030510:intron | 20.0% |
| !! | TTAAAGTTAGTTCCTTAATA+AGG | - | chr7_1:64613731-64613750 | None:intergenic | 20.0% |
| !! | ACTAACTTTAAACAATATAC+AGG | + | chr7_1:64613740-64613759 | Msa1030510:intron | 20.0% |
| !!! | TGTTTTGGATTTCATATTAT+TGG | + | chr7_1:64613884-64613903 | Msa1030510:intron | 20.0% |
| !! | TTTCATATTATTGGATTATG+AGG | + | chr7_1:64613893-64613912 | Msa1030510:intron | 20.0% |
| !! | TTCCATACATTTCAATAAAA+AGG | - | chr7_1:64613938-64613957 | None:intergenic | 20.0% |
| !! | CAAATTCTTTCAAAATCAAT+TGG | + | chr7_1:64614521-64614540 | Msa1030510:intron | 20.0% |
| !! | CCATATATATGTTTAAATCA+TGG | - | chr7_1:64615265-64615284 | None:intergenic | 20.0% |
| !! | CCATGATTTAAACATATATA+TGG | + | chr7_1:64615262-64615281 | Msa1030510:intron | 20.0% |
| !! | TGTAATGATAATTGAAATTC+AGG | - | chr7_1:64615589-64615608 | None:intergenic | 20.0% |
| !!! | TTTAGAGCTAATAGTGTTTT+TGG | + | chr7_1:64612614-64612633 | Msa1030510:intron | 25.0% |
| !! | TAAAAATTTGAGTTCTTTGG+TGG | + | chr7_1:64612766-64612785 | Msa1030510:intron | 25.0% |
| ! | TATGTAAGATATGCAGAATA+TGG | + | chr7_1:64612942-64612961 | Msa1030510:intron | 25.0% |
| ! | ATAGTAGTATATCAAATGTG+TGG | + | chr7_1:64613111-64613130 | Msa1030510:CDS | 25.0% |
| !! | TGCCTTTTTATTGAAATGTA+TGG | + | chr7_1:64613933-64613952 | Msa1030510:intron | 25.0% |
| ! | ATAGAACAAATGATTTCGTT+TGG | - | chr7_1:64614447-64614466 | None:intergenic | 25.0% |
| !! | GAAAAAAAGATATTGATTGG+AGG | - | chr7_1:64614576-64614595 | None:intergenic | 25.0% |
| !! | TATCTTCAAGGTTTATCTTT+TGG | - | chr7_1:64614779-64614798 | None:intergenic | 25.0% |
| ! | CATATTATTGGATATCTTCA+AGG | - | chr7_1:64614791-64614810 | None:intergenic | 25.0% |
| ! | TAAAAGAAAGTGATTAGGAT+TGG | - | chr7_1:64614820-64614839 | None:intergenic | 25.0% |
| !! | CTTTCTTTTATAATATTGGC+AGG | + | chr7_1:64614830-64614849 | Msa1030510:intron | 25.0% |
| ! | TTGTAATAAAAGAATGTGCA+AGG | - | chr7_1:64615018-64615037 | None:intergenic | 25.0% |
| ! | AAAACAACTAAGTGTATGTT+TGG | + | chr7_1:64615092-64615111 | Msa1030510:intron | 25.0% |
| ! | ATGATAATTGAAATTCAGGT+AGG | - | chr7_1:64615585-64615604 | None:intergenic | 25.0% |
| ! | AGTAAAAATTGGGAAACATT+AGG | + | chr7_1:64615652-64615671 | Msa1030510:CDS | 25.0% |
| !! | ACTTAAAGGATTAGTTCCAA+AGG | + | chr7_1:64612413-64612432 | Msa1030510:CDS | 30.0% |
| AATTTATCAGCAAGATCCTT+TGG | - | chr7_1:64612432-64612451 | None:intergenic | 30.0% | |
| ! | AGAATTTCAAGTGAACAAAC+CGG | - | chr7_1:64612496-64612515 | None:intergenic | 30.0% |
| ! | GAGTACTTGTCTTTTCTAAT+TGG | + | chr7_1:64612832-64612851 | Msa1030510:CDS | 30.0% |
| !! | AAGTGGAAAAACTTTGAAGT+TGG | + | chr7_1:64612987-64613006 | Msa1030510:CDS | 30.0% |
| TTGAAGTTGGAAAACAAGTA+CGG | + | chr7_1:64613000-64613019 | Msa1030510:intron | 30.0% | |
| AACCATGGTAAAGTGTAATT+TGG | + | chr7_1:64613084-64613103 | Msa1030510:intron | 30.0% | |
| TATATCAAATGTGTGGTTTG+AGG | + | chr7_1:64613118-64613137 | Msa1030510:CDS | 30.0% | |
| TTCCACGTTGAAAAGAAATA+AGG | + | chr7_1:64613320-64613339 | Msa1030510:intron | 30.0% | |
| AATCACATGTGTCATAGAAT+CGG | + | chr7_1:64613449-64613468 | Msa1030510:intron | 30.0% | |
| TATATTGTGGATCCTTCAAT+AGG | - | chr7_1:64613526-64613545 | None:intergenic | 30.0% | |
| ! | CTTAATAAGGTGCTTAATGT+TGG | - | chr7_1:64613718-64613737 | None:intergenic | 30.0% |
| CAACATTAAGCACCTTATTA+AGG | + | chr7_1:64613716-64613735 | Msa1030510:intron | 30.0% | |
| TGCTATTATTTGACAAAACC+TGG | - | chr7_1:64613855-64613874 | None:intergenic | 30.0% | |
| TTAAAGACTAAGTGCATGTT+TGG | + | chr7_1:64614181-64614200 | Msa1030510:intron | 30.0% | |
| ! | CCATTGAGATTTTGTAAAAC+TGG | - | chr7_1:64614215-64614234 | None:intergenic | 30.0% |
| ! | CCAGTTTTACAAAATCTCAA+TGG | + | chr7_1:64614212-64614231 | Msa1030510:intron | 30.0% |
| TTTGAGCTTCAACATAATCA+TGG | - | chr7_1:64614240-64614259 | None:intergenic | 30.0% | |
| ! | TCAATGTGTAAACGTGATTT+TGG | - | chr7_1:64614276-64614295 | None:intergenic | 30.0% |
| !!! | GTTTTGATTGACGTTAAGTT+TGG | - | chr7_1:64614304-64614323 | None:intergenic | 30.0% |
| !! | AGAAAACTTGATTTTGAGTG+TGG | + | chr7_1:64614371-64614390 | Msa1030510:intron | 30.0% |
| GGATCAAAATCCAAAATAGA+TGG | + | chr7_1:64614542-64614561 | Msa1030510:intron | 30.0% | |
| ! | GGTATAAAGACCATCTATTT+TGG | - | chr7_1:64614555-64614574 | None:intergenic | 30.0% |
| GATTGGATCACTCATATTAT+TGG | - | chr7_1:64614803-64614822 | None:intergenic | 30.0% | |
| ! | TAAGTGTATGTTTGGAATCA+CGG | + | chr7_1:64615100-64615119 | Msa1030510:intron | 30.0% |
| !! | TTGAAAGCACTACAAAATCA+CGG | - | chr7_1:64615151-64615170 | None:intergenic | 30.0% |
| TGTAGCATTTACCAAAATCA+CGG | + | chr7_1:64615173-64615192 | Msa1030510:intron | 30.0% | |
| ! | ATGACATTTTACCGTGATTT+TGG | - | chr7_1:64615187-64615206 | None:intergenic | 30.0% |
| TATACGTGCATGTTTGAATT+CGG | - | chr7_1:64615228-64615247 | None:intergenic | 30.0% | |
| AGCATGGGATAGTAAAAATT+GGG | + | chr7_1:64615642-64615661 | Msa1030510:CDS | 30.0% | |
| ! | GATTTTCATCACTATCTCTA+AGG | - | chr7_1:64615696-64615715 | None:intergenic | 30.0% |
| !! | GATCTTCAAAGAGCACTTAA+AGG | + | chr7_1:64612399-64612418 | Msa1030510:CDS | 35.0% |
| CTGATAAATTGTCGTCTCTT+CGG | + | chr7_1:64612442-64612461 | Msa1030510:CDS | 35.0% | |
| AGAGTTTCAGATGAACAAAC+CGG | - | chr7_1:64612588-64612607 | None:intergenic | 35.0% | |
| ATTCTATCGAGGACTAAAAG+TGG | - | chr7_1:64612658-64612677 | None:intergenic | 35.0% | |
| TCGATCGATAAATTCTATCG+AGG | - | chr7_1:64612669-64612688 | None:intergenic | 35.0% | |
| ! | TCGATCGAAAAATGATGATG+TGG | + | chr7_1:64612681-64612700 | Msa1030510:intron | 35.0% |
| CTAATTGGACTTACTACGAA+AGG | + | chr7_1:64612847-64612866 | Msa1030510:CDS | 35.0% | |
| ! | ATATGCAGAATATGGTCTTG+AGG | + | chr7_1:64612950-64612969 | Msa1030510:intron | 35.0% |
| ! | TATGCAGAATATGGTCTTGA+GGG | + | chr7_1:64612951-64612970 | Msa1030510:intron | 35.0% |
| TGCCAAATTACACTTTACCA+TGG | - | chr7_1:64613089-64613108 | None:intergenic | 35.0% | |
| ATGGTAAAGTGTAATTTGGC+AGG | + | chr7_1:64613088-64613107 | Msa1030510:intron | 35.0% | |
| GCTATCATGTGTTCACTTTA+TGG | + | chr7_1:64613142-64613161 | Msa1030510:CDS | 35.0% | |
| TGATTCACTGATGATTCCAA+GGG | + | chr7_1:64613187-64613206 | Msa1030510:CDS | 35.0% | |
| ! | TCTGCTAATGCTGCATATTT+TGG | + | chr7_1:64613286-64613305 | Msa1030510:intron | 35.0% |
| !! | GACCTTATTTCTTTTCAACG+TGG | - | chr7_1:64613325-64613344 | None:intergenic | 35.0% |
| ATAGAATCGGATCCTATTGA+AGG | + | chr7_1:64613511-64613530 | Msa1030510:intron | 35.0% | |
| TTGTACTATCAGATAGCAAG+AGG | + | chr7_1:64613574-64613593 | Msa1030510:intron | 35.0% | |
| TGTACTATCAGATAGCAAGA+GGG | + | chr7_1:64613575-64613594 | Msa1030510:intron | 35.0% | |
| !! | GATTTGTTACTCAAAGCATC+AGG | + | chr7_1:64613606-64613625 | Msa1030510:CDS | 35.0% |
| TAAACATACTTGGTTTCAGC+TGG | - | chr7_1:64613672-64613691 | None:intergenic | 35.0% | |
| ! | GTACTTGTTGATCAATCACT+AGG | + | chr7_1:64613829-64613848 | Msa1030510:intron | 35.0% |
| TATAGACCAAGTCCTACATT+AGG | + | chr7_1:64613986-64614005 | Msa1030510:intron | 35.0% | |
| CTTATACCTAATGTAGGACT+TGG | - | chr7_1:64613995-64614014 | None:intergenic | 35.0% | |
| ! | TGAGGTCTTATACCTAATGT+AGG | - | chr7_1:64614001-64614020 | None:intergenic | 35.0% |
| !! | ACCTCATCTTGATGACTTTT+AGG | + | chr7_1:64614015-64614034 | Msa1030510:intron | 35.0% |
| !! | CCTCATCTTGATGACTTTTA+GGG | + | chr7_1:64614016-64614035 | Msa1030510:intron | 35.0% |
| ! | ACAGCTGATTTACTTTAGTC+AGG | + | chr7_1:64614114-64614133 | Msa1030510:CDS | 35.0% |
| !! | AGTTTCTCACTTTTATGAGC+AGG | + | chr7_1:64614624-64614643 | Msa1030510:intron | 35.0% |
| ATGGAAATTCCTTGAATCCA+AGG | + | chr7_1:64614714-64614733 | Msa1030510:CDS | 35.0% | |
| AACTACTAACCTTGGATTCA+AGG | - | chr7_1:64614726-64614745 | None:intergenic | 35.0% | |
| GATAGCATAACTACTAACCT+TGG | - | chr7_1:64614734-64614753 | None:intergenic | 35.0% | |
| ! | CTTCAAGGTTTATCTTTTGG+TGG | - | chr7_1:64614776-64614795 | None:intergenic | 35.0% |
| ACTTCTTCAGGAAAGCAAAA+AGG | + | chr7_1:64614947-64614966 | Msa1030510:CDS | 35.0% | |
| GTGAATTTCACAGAATCACA+TGG | + | chr7_1:64615122-64615141 | Msa1030510:intron | 35.0% | |
| TACTTCTTTGATGCAACTTC+AGG | - | chr7_1:64615386-64615405 | None:intergenic | 35.0% | |
| !! | TCAAAGAAGTACCAGATGTA+TGG | + | chr7_1:64615395-64615414 | Msa1030510:CDS | 35.0% |
| !! | CTTACTTTTCTTGCTCCAAA+AGG | - | chr7_1:64615424-64615443 | None:intergenic | 35.0% |
| !!! | CTTTTGGAGCAAGAAAAGTA+AGG | + | chr7_1:64615422-64615441 | Msa1030510:intron | 35.0% |
| ! | GAATTTTGCTAATGATGCAG+AGG | + | chr7_1:64615538-64615557 | Msa1030510:intron | 35.0% |
| AATTGAAATTCAGGTAGGTC+TGG | - | chr7_1:64615580-64615599 | None:intergenic | 35.0% | |
| CAGCATGGGATAGTAAAAAT+TGG | + | chr7_1:64615641-64615660 | Msa1030510:CDS | 35.0% | |
| !! | TCTCTAAGGTGTTCTTTCAA+TGG | - | chr7_1:64615682-64615701 | None:intergenic | 35.0% |
| GGAGTTAACACAACTACTTC+AGG | - | chr7_1:64612354-64612373 | None:intergenic | 40.0% | |
| TGCACTGGAATTCTGATTGA+TGG | - | chr7_1:64612375-64612394 | None:intergenic | 40.0% | |
| ! | CTTTGAAGATCAGATTGCAC+TGG | - | chr7_1:64612390-64612409 | None:intergenic | 40.0% |
| GATCAGCTATAGCTGAATTG+CGG | + | chr7_1:64612797-64612816 | Msa1030510:CDS | 40.0% | |
| ! | ATGCAGAATATGGTCTTGAG+GGG | + | chr7_1:64612952-64612971 | Msa1030510:intron | 40.0% |
| AGGGGCTAATAGAATTCAAG+TGG | + | chr7_1:64612970-64612989 | Msa1030510:CDS | 40.0% | |
| CTGATTCACTGATGATTCCA+AGG | + | chr7_1:64613186-64613205 | Msa1030510:CDS | 40.0% | |
| CACTGCTTATCGCTTTCAAT+TGG | + | chr7_1:64613474-64613493 | Msa1030510:intron | 40.0% | |
| ATCGCTTTCAATTGGAAGTG+CGG | + | chr7_1:64613482-64613501 | Msa1030510:intron | 40.0% | |
| !! | AGTGCGGTGTTACATAGAAT+CGG | + | chr7_1:64613498-64613517 | Msa1030510:intron | 40.0% |
| GATACCTAGAGTTCTGTGTT+AGG | + | chr7_1:64613628-64613647 | Msa1030510:CDS | 40.0% | |
| TTTGCCTAACACAGAACTCT+AGG | - | chr7_1:64613635-64613654 | None:intergenic | 40.0% | |
| TTGGTTTCAGCTGGTATTTG+AGG | - | chr7_1:64613663-64613682 | None:intergenic | 40.0% | |
| !! | AATTTTGCCACATGACTTGC+AGG | + | chr7_1:64613765-64613784 | Msa1030510:CDS | 40.0% |
| GCTATAGCTATTCAAGCACT+AGG | + | chr7_1:64613802-64613821 | Msa1030510:CDS | 40.0% | |
| GTGATTGATCAACAAGTACC+TGG | - | chr7_1:64613828-64613847 | None:intergenic | 40.0% | |
| CCCTAAAAGTCATCAAGATG+AGG | - | chr7_1:64614019-64614038 | None:intergenic | 40.0% | |
| AGTGATGAGTAGAAGCTGAA+AGG | - | chr7_1:64614155-64614174 | None:intergenic | 40.0% | |
| AGCATCTCAGGTTCATCAAA+TGG | + | chr7_1:64614695-64614714 | Msa1030510:CDS | 40.0% | |
| AAGGAAACATACCTTGTCAC+TGG | - | chr7_1:64614999-64615018 | None:intergenic | 40.0% | |
| ATGCAACTTGTGAGAATGCA+TGG | - | chr7_1:64615053-64615072 | None:intergenic | 40.0% | |
| TGCATTCTCACAAGTTGCAT+TGG | + | chr7_1:64615053-64615072 | Msa1030510:intron | 40.0% | |
| !! | CCAAAAGGTATCCATACATC+TGG | - | chr7_1:64615409-64615428 | None:intergenic | 40.0% |
| ! | CCAGATGTATGGATACCTTT+TGG | + | chr7_1:64615406-64615425 | Msa1030510:CDS | 40.0% |
| TCAGGCAATTCATACTCATC+TGG | - | chr7_1:64615613-64615632 | None:intergenic | 40.0% | |
| TCTTCGGAACCAGATTGTGT+TGG | + | chr7_1:64612458-64612477 | Msa1030510:CDS | 45.0% | |
| CTTCTGCTACCAACACAATC+TGG | - | chr7_1:64612470-64612489 | None:intergenic | 45.0% | |
| !! | GTGTTGGTAGCAGAAGATAC+CGG | + | chr7_1:64612474-64612493 | Msa1030510:CDS | 45.0% |
| CTTCTGCTACAAGCACAATC+TGG | - | chr7_1:64612562-64612581 | None:intergenic | 45.0% | |
| GTGCTTGTAGCAGAAGATAC+CGG | + | chr7_1:64612566-64612585 | Msa1030510:intron | 45.0% | |
| CTATCGAGGACTAAAAGTGG+AGG | - | chr7_1:64612655-64612674 | None:intergenic | 45.0% | |
| ACCATTCAGACTCTGGATTC+AGG | + | chr7_1:64613210-64613229 | Msa1030510:CDS | 45.0% | |
| CCATTCAGACTCTGGATTCA+GGG | + | chr7_1:64613211-64613230 | Msa1030510:CDS | 45.0% | |
| ! | AGACCAATGATGCACTGACA+TGG | + | chr7_1:64613361-64613380 | Msa1030510:intron | 45.0% |
| TGTCCATGTCAGTGCATCAT+TGG | - | chr7_1:64613367-64613386 | None:intergenic | 45.0% | |
| TGTTGATCAATCACTAGGCC+AGG | + | chr7_1:64613834-64613853 | Msa1030510:intron | 45.0% | |
| TAGGGAACTGAGATTCAGCT+TGG | + | chr7_1:64614034-64614053 | Msa1030510:intron | 45.0% | |
| !! | AGTTGCCTTTTGACTGTCCA+CGG | - | chr7_1:64614065-64614084 | None:intergenic | 45.0% |
| AGGCAACTTTGTCTGTGAAG+AGG | + | chr7_1:64614077-64614096 | Msa1030510:CDS | 45.0% | |
| CAACTTTGTCTGTGAAGAGG+AGG | + | chr7_1:64614080-64614099 | Msa1030510:CDS | 45.0% | |
| TTTGTCTGTGAAGAGGAGGA+TGG | + | chr7_1:64614084-64614103 | Msa1030510:CDS | 45.0% | |
| TCGGAATGTGACTTCAACCA+AGG | + | chr7_1:64614661-64614680 | Msa1030510:CDS | 45.0% | |
| CGGAATGTGACTTCAACCAA+GGG | + | chr7_1:64614662-64614681 | Msa1030510:CDS | 45.0% | |
| GCTACAGCTTACTACTACCA+TGG | + | chr7_1:64614852-64614871 | Msa1030510:CDS | 45.0% | |
| TGCTGCAGAAGAACTTCTTC+AGG | + | chr7_1:64614935-64614954 | Msa1030510:CDS | 45.0% | |
| TGCAAGACAAAAGCTCAAGC+AGG | - | chr7_1:64614973-64614992 | None:intergenic | 45.0% | |
| ! | TGTTTAGGGCTTCTCCACTT+TGG | + | chr7_1:64615330-64615349 | Msa1030510:intron | 45.0% |
| ! | GTTTAGGGCTTCTCCACTTT+GGG | + | chr7_1:64615331-64615350 | Msa1030510:intron | 45.0% |
| ! | TTTAGGGCTTCTCCACTTTG+GGG | + | chr7_1:64615332-64615351 | Msa1030510:intron | 45.0% |
| AGTTTCATGACACCCCAAAG+TGG | - | chr7_1:64615347-64615366 | None:intergenic | 45.0% | |
| TGCCTGAAATTGATGCAGCA+TGG | + | chr7_1:64615626-64615645 | Msa1030510:CDS | 45.0% | |
| GCCTGAAATTGATGCAGCAT+GGG | + | chr7_1:64615627-64615646 | Msa1030510:CDS | 45.0% | |
| TCCCATGCTGCATCAATTTC+AGG | - | chr7_1:64615631-64615650 | None:intergenic | 45.0% | |
| !! | GAGTTCTTTGGTGGTGCAGA+TGG | + | chr7_1:64612775-64612794 | Msa1030510:intron | 50.0% |
| CCCTGAATCCAGAGTCTGAA+TGG | - | chr7_1:64613214-64613233 | None:intergenic | 50.0% | |
| CAGCGTGTCAATTTCGTGTC+TGG | - | chr7_1:64613390-64613409 | None:intergenic | 50.0% | |
| ! | TTTGCCACATGACTTGCAGG+AGG | + | chr7_1:64613768-64613787 | Msa1030510:CDS | 50.0% |
| ! | TTGCCACATGACTTGCAGGA+GGG | + | chr7_1:64613769-64613788 | Msa1030510:CDS | 50.0% |
| ! | TGACTTGCAGGAGGGTGTAT+TGG | + | chr7_1:64613777-64613796 | Msa1030510:CDS | 50.0% |
| AGCTATTCAAGCACTAGGCC+AGG | + | chr7_1:64613807-64613826 | Msa1030510:CDS | 50.0% | |
| TCTAGCCGTGGACAGTCAAA+AGG | + | chr7_1:64614057-64614076 | Msa1030510:CDS | 50.0% | |
| GCAGGCGTATCACTGCTTAT+CGG | + | chr7_1:64614642-64614661 | Msa1030510:intron | 50.0% | |
| TGTGACTTCAACCAAGGGCA+TGG | + | chr7_1:64614667-64614686 | Msa1030510:CDS | 50.0% | |
| GATGCTTCTTTCCATGCCCT+TGG | - | chr7_1:64614681-64614700 | None:intergenic | 50.0% | |
| !! | GGCATGGAAAGAAGCATCTC+AGG | + | chr7_1:64614683-64614702 | Msa1030510:CDS | 50.0% |
| CATGGTCTGATCCTCGACAA+GGG | + | chr7_1:64614870-64614889 | Msa1030510:CDS | 50.0% | |
| ACCGACCAGTCACATTCTTG+CGG | + | chr7_1:64614899-64614918 | Msa1030510:CDS | 50.0% | |
| ACCGCAAGAATGTGACTGGT+CGG | - | chr7_1:64614903-64614922 | None:intergenic | 50.0% | |
| AGACACCGCAAGAATGTGAC+TGG | - | chr7_1:64614907-64614926 | None:intergenic | 50.0% | |
| GTAGGTCTGGCAATGCTTGA+TGG | - | chr7_1:64615567-64615586 | None:intergenic | 50.0% | |
| GGCTATGCTGACACTGTCTG+AGG | + | chr7_1:64613163-64613182 | Msa1030510:CDS | 55.0% | |
| CCAGAGTCTGAATGGTCCCT+TGG | - | chr7_1:64613206-64613225 | None:intergenic | 55.0% | |
| CCAAGGGACCATTCAGACTC+TGG | + | chr7_1:64613203-64613222 | Msa1030510:CDS | 55.0% | |
| GGATTCAGGGTTGTGTCTGC+AGG | + | chr7_1:64613224-64613243 | Msa1030510:CDS | 55.0% | |
| ACACCCTCCTGCAAGTCATG+TGG | - | chr7_1:64613775-64613794 | None:intergenic | 55.0% | |
| GATTCAGCTTGGTCTAGCCG+TGG | + | chr7_1:64614045-64614064 | Msa1030510:CDS | 55.0% | |
| CCTTGTCGAGGATCAGACCA+TGG | - | chr7_1:64614872-64614891 | None:intergenic | 55.0% | |
| CCATGGTCTGATCCTCGACA+AGG | + | chr7_1:64614869-64614888 | Msa1030510:CDS | 55.0% | |
| ! | TCGGTTCGTTACCCTTGTCG+AGG | - | chr7_1:64614884-64614903 | None:intergenic | 55.0% |
| GTCTTGCAGCTCCAGTGACA+AGG | + | chr7_1:64614985-64615004 | Msa1030510:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 64612306 | 64615726 | 64612306 | ID=Msa1030510;Name=Msa1030510 |
| chr7_1 | mRNA | 64612306 | 64615726 | 64612306 | ID=Msa1030510-mRNA-1;Parent=Msa1030510;Name=Msa1030510-mRNA-1;_AED=0.06;_eAED=0.07;_QI=0|0|0|1|1|1|11|0|412 |
| chr7_1 | exon | 64612306 | 64612495 | 64612306 | ID=Msa1030510-mRNA-1:exon:14203;Parent=Msa1030510-mRNA-1 |
| chr7_1 | exon | 64612794 | 64612868 | 64612794 | ID=Msa1030510-mRNA-1:exon:14204;Parent=Msa1030510-mRNA-1 |
| chr7_1 | exon | 64612958 | 64613016 | 64612958 | ID=Msa1030510-mRNA-1:exon:14205;Parent=Msa1030510-mRNA-1 |
| chr7_1 | exon | 64613110 | 64613245 | 64613110 | ID=Msa1030510-mRNA-1:exon:14206;Parent=Msa1030510-mRNA-1 |
| chr7_1 | exon | 64613586 | 64613682 | 64613586 | ID=Msa1030510-mRNA-1:exon:14207;Parent=Msa1030510-mRNA-1 |
| chr7_1 | exon | 64613762 | 64613828 | 64613762 | ID=Msa1030510-mRNA-1:exon:14208;Parent=Msa1030510-mRNA-1 |
| chr7_1 | exon | 64614037 | 64614135 | 64614037 | ID=Msa1030510-mRNA-1:exon:14209;Parent=Msa1030510-mRNA-1 |
| chr7_1 | exon | 64614646 | 64614735 | 64614646 | ID=Msa1030510-mRNA-1:exon:14210;Parent=Msa1030510-mRNA-1 |
| chr7_1 | exon | 64614852 | 64615006 | 64614852 | ID=Msa1030510-mRNA-1:exon:14211;Parent=Msa1030510-mRNA-1 |
| chr7_1 | exon | 64615337 | 64615438 | 64615337 | ID=Msa1030510-mRNA-1:exon:14212;Parent=Msa1030510-mRNA-1 |
| chr7_1 | exon | 64615558 | 64615726 | 64615558 | ID=Msa1030510-mRNA-1:exon:14213;Parent=Msa1030510-mRNA-1 |
| chr7_1 | CDS | 64612306 | 64612495 | 64612306 | ID=Msa1030510-mRNA-1:cds;Parent=Msa1030510-mRNA-1 |
| chr7_1 | CDS | 64612794 | 64612868 | 64612794 | ID=Msa1030510-mRNA-1:cds;Parent=Msa1030510-mRNA-1 |
| chr7_1 | CDS | 64612958 | 64613016 | 64612958 | ID=Msa1030510-mRNA-1:cds;Parent=Msa1030510-mRNA-1 |
| chr7_1 | CDS | 64613110 | 64613245 | 64613110 | ID=Msa1030510-mRNA-1:cds;Parent=Msa1030510-mRNA-1 |
| chr7_1 | CDS | 64613586 | 64613682 | 64613586 | ID=Msa1030510-mRNA-1:cds;Parent=Msa1030510-mRNA-1 |
| chr7_1 | CDS | 64613762 | 64613828 | 64613762 | ID=Msa1030510-mRNA-1:cds;Parent=Msa1030510-mRNA-1 |
| chr7_1 | CDS | 64614037 | 64614135 | 64614037 | ID=Msa1030510-mRNA-1:cds;Parent=Msa1030510-mRNA-1 |
| chr7_1 | CDS | 64614646 | 64614735 | 64614646 | ID=Msa1030510-mRNA-1:cds;Parent=Msa1030510-mRNA-1 |
| chr7_1 | CDS | 64614852 | 64615006 | 64614852 | ID=Msa1030510-mRNA-1:cds;Parent=Msa1030510-mRNA-1 |
| chr7_1 | CDS | 64615337 | 64615438 | 64615337 | ID=Msa1030510-mRNA-1:cds;Parent=Msa1030510-mRNA-1 |
| chr7_1 | CDS | 64615558 | 64615726 | 64615558 | ID=Msa1030510-mRNA-1:cds;Parent=Msa1030510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
