AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1157390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1157390 MtrunA17_Chr7g0251521 98.544 412 6 0 1 412 1 412 0.0 835
Msa1157390 MtrunA17_Chr1g0188821 43.932 412 209 3 1 391 1 411 8.48e-116 344
Msa1157390 MtrunA17_Chr6g0482521 44.794 413 205 4 1 391 1 412 5.58e-111 332
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1157390 AT5G14020.5 63.384 396 133 5 1 384 1 396 3.10e-177 500
Msa1157390 AT5G14020.4 63.384 396 133 5 1 384 1 396 3.10e-177 500
Msa1157390 AT5G14020.1 63.384 396 133 5 1 384 1 396 3.10e-177 500
Msa1157390 AT5G14020.3 61.224 343 121 5 1 331 1 343 1.61e-143 412
Msa1157390 AT5G14020.7 61.224 343 121 5 1 331 1 343 1.61e-143 412
Msa1157390 AT1G73390.7 42.857 413 216 3 1 394 1 412 2.57e-117 348
Msa1157390 AT1G73390.1 42.857 413 216 3 1 394 1 412 2.57e-117 348
Msa1157390 AT1G73390.3 42.857 413 216 3 1 394 1 412 2.57e-117 348
Msa1157390 AT1G73390.2 42.857 413 216 3 1 394 1 412 2.57e-117 348
Msa1157390 AT1G73390.6 42.857 413 216 3 1 394 1 412 2.57e-117 348
Msa1157390 AT1G73390.5 42.857 413 216 3 1 394 1 412 2.57e-117 348
Msa1157390 AT1G17940.3 44.581 406 204 4 1 386 1 405 1.23e-112 336
Msa1157390 AT1G17940.6 44.581 406 204 4 1 386 1 405 1.23e-112 336
Msa1157390 AT1G17940.5 44.581 406 204 4 1 386 1 405 1.23e-112 336
Msa1157390 AT1G17940.1 44.581 406 204 4 1 386 1 405 1.23e-112 336
Msa1157390 AT5G14020.2 59.375 288 105 5 1 276 1 288 1.28e-111 329
Msa1157390 AT5G14020.6 59.375 288 105 5 1 276 1 288 1.28e-111 329
Msa1157390 AT1G73390.4 42.690 342 177 2 1 323 1 342 1.32e-95 290
Msa1157390 AT1G17940.4 42.321 293 149 3 1 273 1 293 8.51e-72 229
Msa1157390 AT1G17940.2 41.414 297 154 3 1 277 1 297 3.29e-71 227

Find 89 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTATCATGTGTTCACTTTA+TGG 0.109625 7_4:+46375754 Msa1157390:CDS
GATCTTCAAAGAGCACTTAA+AGG 0.201261 7_4:+46375012 Msa1157390:CDS
GTTTAGGGCTCCTCCACTTT+GGG 0.231705 7_4:+46377953 Msa1157390:intron
ACCATTCAGACTCTGGATTC+AGG 0.238038 7_4:+46375822 Msa1157390:CDS
TCCCATGCTGCATCAATTTC+AGG 0.267812 7_4:-46378257 None:intergenic
TGTAATGATAATTGAAATTC+AGG 0.304672 7_4:-46378215 None:intergenic
CCAGATGTATGGATACCTTT+TGG 0.327111 7_4:+46378028 Msa1157390:CDS
TACTTCTTTGATGCAACTTC+AGG 0.340688 7_4:-46378005 None:intergenic
GGATTCAGGGTTGTGTCTGC+AGG 0.363702 7_4:+46375836 Msa1157390:CDS
AACTACTAACCTTGGATTCA+AGG 0.388201 7_4:-46377360 None:intergenic
GATTTGTTACTCAAAGCATC+AGG 0.390162 7_4:+46376226 Msa1157390:CDS
CTAATTGGACTTACTAAGAA+AGG 0.390766 7_4:+46375460 Msa1157390:CDS
TGCACTGGAATTCTGATTGA+TGG 0.392943 7_4:-46374985 None:intergenic
AATTTATCAGCAAGATCCTT+TGG 0.395348 7_4:-46375042 None:intergenic
TGTTTAGGGCTCCTCCACTT+TGG 0.404276 7_4:+46377952 Msa1157390:intron
GGAGTTAACACAACTACTTC+AGG 0.404554 7_4:-46374964 None:intergenic
ACTTCTGCAAGAAAGCAAAA+AGG 0.405890 7_4:+46377584 Msa1157390:CDS
TCTCTAAGGTGTTCTTTCAA+TGG 0.406270 7_4:-46378308 None:intergenic
GTAGGTCTGGCAATGCTTGA+TGG 0.409695 7_4:-46378193 None:intergenic
GATGCTTCTTTCCATGCCCT+TGG 0.413172 7_4:-46377315 None:intergenic
CTGATAAATTGTCGTCTCTT+CGG 0.417648 7_4:+46375055 Msa1157390:CDS
AGCATCTCAGGTTCATCAAA+TGG 0.430921 7_4:+46377332 Msa1157390:CDS
TAGTTTCAGCTGGTATTTGA+GGG 0.431756 7_4:-46376279 None:intergenic
ACAGCTGATTTACTTTAGTC+AGG 0.433860 7_4:+46376777 Msa1157390:CDS
TCAGGCAATTCATACTCATC+TGG 0.443765 7_4:-46378239 None:intergenic
AATTGAAATTCAGGTAGGTC+TGG 0.452129 7_4:-46378206 None:intergenic
CTTCTGCTACCAACACAATC+TGG 0.453891 7_4:-46375080 None:intergenic
CCATTCAGACTCTGGATTCA+GGG 0.455105 7_4:+46375823 Msa1157390:CDS
ACATTCTGATAAGCAGTGAT+AGG 0.456450 7_4:-46377284 None:intergenic
TCAAAGAAGTACCAGATGTA+TGG 0.462433 7_4:+46378017 Msa1157390:CDS
CCCTGAATCCAGAGTCTGAA+TGG 0.465037 7_4:-46375823 None:intergenic
CCAAAAGGTATCCATACATC+TGG 0.465741 7_4:-46378028 None:intergenic
TTAGTTTCAGCTGGTATTTG+AGG 0.476856 7_4:-46376280 None:intergenic
GGTACCTGGAGTTCTGTGTT+AGG 0.477641 7_4:+46376248 Msa1157390:CDS
CCAAGGGACCATTCAGACTC+TGG 0.481723 7_4:+46375815 Msa1157390:CDS
ACTCAAAGCATCAGGGTACC+TGG 0.482271 7_4:+46376234 Msa1157390:CDS
GGCATGGAAAGAAGCATCTC+AGG 0.490599 7_4:+46377320 Msa1157390:CDS
CTTTGAAGATCAGATTGCAC+TGG 0.502458 7_4:-46375000 None:intergenic
TATGCAGAATATGGTCTTGA+GGG 0.505777 7_4:+46375564 Msa1157390:intron
ATGGAAATTCCTTGAATCCA+AGG 0.508954 7_4:+46377351 Msa1157390:CDS
GAGACATACTTAGTTTCAGC+TGG 0.509304 7_4:-46376289 None:intergenic
TTTAGGGCTCCTCCACTTTG+GGG 0.510359 7_4:+46377954 Msa1157390:intron
CCAGAGTCTGAATGGTCCCT+TGG 0.511678 7_4:-46375815 None:intergenic
GCCACATGACTTGCAGGAGG+GGG 0.517113 7_4:+46376394 Msa1157390:CDS
TCTTGCTGTGGACAGTCAAA+AGG 0.525242 7_4:+46376720 Msa1157390:CDS
TAGGGAACTGAGATTCAGCT+TGG 0.533303 7_4:+46376697 Msa1157390:intron
TATAAAGTGTATCAATCAGT+TGG 0.534930 7_4:-46378344 None:intergenic
TGCAAGACAAAAGCTCAAGC+AGG 0.536936 7_4:-46377607 None:intergenic
TGTGACTTCAACCAAGGGCA+TGG 0.538663 7_4:+46377304 Msa1157390:CDS
TATATCAAATGTGTGGTTTG+AGG 0.541278 7_4:+46375730 Msa1157390:CDS
CTGATTCACTGATGATTCCA+AGG 0.544560 7_4:+46375798 Msa1157390:CDS
GCTACAGCTTACTACTACCA+TGG 0.555200 7_4:+46377489 Msa1157390:CDS
GTCTTGCAGCTCCAGTGACA+AGG 0.563379 7_4:+46377622 Msa1157390:CDS
GGCTATGCTGACACTGTCTG+AGG 0.564225 7_4:+46375775 Msa1157390:CDS
GCCTGAAATTGATGCAGCAT+GGG 0.571004 7_4:+46378256 Msa1157390:CDS
GATTCAGCTTGGTCTTGCTG+TGG 0.571935 7_4:+46376708 Msa1157390:CDS
TTTGCCTAACACAGAACTCC+AGG 0.573619 7_4:-46376252 None:intergenic
TCAGAATGTGACTTCAACCA+AGG 0.574155 7_4:+46377298 Msa1157390:CDS
TGCCACATGACTTGCAGGAG+GGG 0.575171 7_4:+46376393 Msa1157390:CDS
ACCGCAAGAATGTGACTGCT+CGG 0.576974 7_4:-46377537 None:intergenic
GTGTTGGTAGCAGAAGATAC+CGG 0.577339 7_4:+46375087 Msa1157390:CDS
TTGTACTATCAGATAGCAAG+AGG 0.583720 7_4:+46376194 Msa1157390:intron
TTGCCACATGACTTGCAGGA+GGG 0.585734 7_4:+46376392 Msa1157390:CDS
AGGGGCTAATAGAATTCAAG+TGG 0.587919 7_4:+46375583 Msa1157390:CDS
ATATGCAGAATATGGTCTTG+AGG 0.589378 7_4:+46375563 Msa1157390:intron
CAACTTTGTCTGTGAAGAGG+AGG 0.601511 7_4:+46376743 Msa1157390:CDS
TAGGAAACATACCTTGTCAC+TGG 0.602861 7_4:-46377633 None:intergenic
TCTTCGGAACCAGATTGTGT+TGG 0.603938 7_4:+46375071 Msa1157390:CDS
AGGCAACTTTGTCTGTGAAG+AGG 0.606025 7_4:+46376740 Msa1157390:CDS
ACTTAAAGGATTAGTTCCAA+AGG 0.610707 7_4:+46375026 Msa1157390:CDS
ATGATAATTGAAATTCAGGT+AGG 0.613899 7_4:-46378211 None:intergenic
TGATTCACTGATGATTCCAA+GGG 0.617124 7_4:+46375799 Msa1157390:CDS
TGCCTGAAATTGATGCAGCA+TGG 0.617807 7_4:+46378255 Msa1157390:CDS
TCGGTTCATTACCCTTGTCG+AGG 0.617839 7_4:-46377518 None:intergenic
GCTATAGCTATTCAAGCACT+AGG 0.618036 7_4:+46376425 Msa1157390:CDS
ATTTGTTACTCAAAGCATCA+GGG 0.621991 7_4:+46376227 Msa1157390:CDS
CCATGGTCTGATCCTCGACA+AGG 0.626066 7_4:+46377506 Msa1157390:CDS
TTTGCCACATGACTTGCAGG+AGG 0.634472 7_4:+46376391 Msa1157390:CDS
TTCATGACACCCCAAAGTGG+AGG 0.637927 7_4:-46377963 None:intergenic
TTTGTCTGTGAAGAGGAGGA+TGG 0.648873 7_4:+46376747 Msa1157390:CDS
ACCGAGCAGTCACATTCTTG+CGG 0.652283 7_4:+46377536 Msa1157390:CDS
CAGAATGTGACTTCAACCAA+GGG 0.655314 7_4:+46377299 Msa1157390:CDS
AGTTTCATGACACCCCAAAG+TGG 0.666222 7_4:-46377966 None:intergenic
TGTACTATCAGATAGCAAGA+GGG 0.668745 7_4:+46376195 Msa1157390:intron
ATGCAGAATATGGTCTTGAG+GGG 0.671772 7_4:+46375565 Msa1157390:intron
ATAGTAGTATATCAAATGTG+TGG 0.676872 7_4:+46375723 Msa1157390:CDS
GATCAGCTATAGCTGAATTG+CGG 0.677916 7_4:+46375410 Msa1157390:CDS
CATGGTCTGATCCTCGACAA+GGG 0.693455 7_4:+46377507 Msa1157390:CDS
CCTTGTCGAGGATCAGACCA+TGG 0.693963 7_4:-46377506 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATGGATTAAAAAAATTAAA+TGG - chr7_4:46376493-46376512 None:intergenic 10.0%
!! ATATTTCAATGAAATAATTA+AGG - chr7_4:46378129-46378148 None:intergenic 10.0%
!!! ATTAATTGAAGATATTTTGA+TGG + chr7_4:46375354-46375373 Msa1157390:intron 15.0%
!! GAAAATAAATCATATTTATC+TGG - chr7_4:46375499-46375518 None:intergenic 15.0%
!! TTACTTTAAACAATATATAC+AGG + chr7_4:46376363-46376382 Msa1157390:intron 15.0%
!! GTATCATTAAAAGATATTAA+TGG - chr7_4:46376511-46376530 None:intergenic 15.0%
!! TATTATAAAAGAAAGTGATT+AGG - chr7_4:46377462-46377481 None:intergenic 15.0%
!!! ATCACTTTCTTTTATAATAT+TGG + chr7_4:46377463-46377482 Msa1157390:intron 15.0%
!! ACATATATATGTTTAAATCA+TGG - chr7_4:46377883-46377902 None:intergenic 15.0%
!! GATTTAAACATATATATGTA+TGG + chr7_4:46377884-46377903 Msa1157390:intron 15.0%
!!! TTACTTTGTTTATTTTGTTT+AGG + chr7_4:46377937-46377956 Msa1157390:intron 15.0%
!!! TACTTTGTTTATTTTGTTTA+GGG + chr7_4:46377938-46377957 Msa1157390:intron 15.0%
!! ATATAATGAGTATGTAAAAT+TGG + chr7_4:46378145-46378164 Msa1157390:intron 15.0%
!!! TTTAGAGTTAATAGTGTTTT+TGG + chr7_4:46375135-46375154 Msa1157390:intron 20.0%
!!! GTTTAAAAATTTGAGTTCTT+TGG + chr7_4:46375376-46375395 Msa1157390:intron 20.0%
!!! TTCTTTTTCATCATTGATTT+TGG + chr7_4:46375663-46375682 Msa1157390:intron 20.0%
!!! ATTATTGACTGTTTATATTG+TGG - chr7_4:46376159-46376178 None:intergenic 20.0%
!! ATATAAACAGTCAATAATCA+TGG + chr7_4:46376161-46376180 Msa1157390:intron 20.0%
!! TTAAAGTAAGTACCTTAATA+AGG - chr7_4:46376352-46376371 None:intergenic 20.0%
!! ATTACAAAACATCTATACAA+TGG - chr7_4:46376572-46376591 None:intergenic 20.0%
!!! TGTTTTGTAATTCCAATTAT+TGG + chr7_4:46376581-46376600 Msa1157390:intron 20.0%
!! TTACTAGTTGTAATAAAAGA+AGG - chr7_4:46377662-46377681 None:intergenic 20.0%
!! TGTAATGATAATTGAAATTC+AGG - chr7_4:46378218-46378237 None:intergenic 20.0%
!!! TTTAGAGCTAATAGTGTTTT+TGG + chr7_4:46375227-46375246 Msa1157390:intron 25.0%
!! TAAAAATTTGAGTTCTTTGG+TGG + chr7_4:46375379-46375398 Msa1157390:intron 25.0%
! TATGTATGATATGCAGAATA+TGG + chr7_4:46375555-46375574 Msa1157390:intron 25.0%
!!! TTTGGAGTTTTTTTTAACCA+TGG + chr7_4:46375681-46375700 Msa1157390:intron 25.0%
! ATAGTAGTATATCAAATGTG+TGG + chr7_4:46375723-46375742 Msa1157390:CDS 25.0%
! TTCCACATTGAAAAGATATA+AGG + chr7_4:46375932-46375951 Msa1157390:intron 25.0%
!! GAAGATGATTTTCATTTCTT+TGG + chr7_4:46376609-46376628 Msa1157390:intron 25.0%
! ATTCATCAAGATGAGTTATT+AGG - chr7_4:46376674-46376693 None:intergenic 25.0%
!! ACTCATCTTGATGAATTTTT+AGG + chr7_4:46376678-46376697 Msa1157390:intron 25.0%
!! CTCATCTTGATGAATTTTTA+GGG + chr7_4:46376679-46376698 Msa1157390:intron 25.0%
! AACTAATGATTTCGTTTGTA+TGG - chr7_4:46377038-46377057 None:intergenic 25.0%
! TTATTAATAAGACAGTCTGT+TGG - chr7_4:46377150-46377169 None:intergenic 25.0%
! AGCACTAAATGAAGAAAAAA+TGG - chr7_4:46377188-46377207 None:intergenic 25.0%
! TAAAAGTGAGAATTGAGAAA+TGG - chr7_4:46377256-46377275 None:intergenic 25.0%
!! TATCTTCAAGGTTTATCTTT+TGG - chr7_4:46377416-46377435 None:intergenic 25.0%
! CATATTATTGGATATCTTCA+AGG - chr7_4:46377428-46377447 None:intergenic 25.0%
! TAAAAGAAAGTGATTAGGAT+TGG - chr7_4:46377457-46377476 None:intergenic 25.0%
!! CTTTCTTTTATAATATTGGC+AGG + chr7_4:46377467-46377486 Msa1157390:intron 25.0%
!! AAATATGTGTAGAAAGTGTA+TGG - chr7_4:46377690-46377709 None:intergenic 25.0%
!! TAAGTGTATGTTTAGAATCA+CGG + chr7_4:46377719-46377738 Msa1157390:intron 25.0%
! TTGAAAGTTCAACAAAATCA+AGG - chr7_4:46377769-46377788 None:intergenic 25.0%
! ATGATAATTGAAATTCAGGT+AGG - chr7_4:46378214-46378233 None:intergenic 25.0%
! AGTAAAAATTGGGAAACATT+AGG + chr7_4:46378281-46378300 Msa1157390:CDS 25.0%
!! ACTTAAAGGATTAGTTCCAA+AGG + chr7_4:46375026-46375045 Msa1157390:CDS 30.0%
AATTTATCAGCAAGATCCTT+TGG - chr7_4:46375045-46375064 None:intergenic 30.0%
! AGAATTTCAAGTGAACAAAC+CGG - chr7_4:46375109-46375128 None:intergenic 30.0%
! GAGTACTTGTCTTTTCTAAT+TGG + chr7_4:46375445-46375464 Msa1157390:CDS 30.0%
CTAATTGGACTTACTAAGAA+AGG + chr7_4:46375460-46375479 Msa1157390:CDS 30.0%
!! AAGTGGAAAAACTTTGAAGT+TGG + chr7_4:46375600-46375619 Msa1157390:CDS 30.0%
TTGAAGTTGGAAAACAAGTA+CGG + chr7_4:46375613-46375632 Msa1157390:intron 30.0%
AACCATGGTAAAGTGTAATT+TGG + chr7_4:46375696-46375715 Msa1157390:intron 30.0%
TATATCAAATGTGTGGTTTG+AGG + chr7_4:46375730-46375749 Msa1157390:CDS 30.0%
! GACCTTATATCTTTTCAATG+TGG - chr7_4:46375937-46375956 None:intergenic 30.0%
ATAGAATCGGATCATATTGA+AGG + chr7_4:46376131-46376150 Msa1157390:intron 30.0%
! ATTTGTTACTCAAAGCATCA+GGG + chr7_4:46376227-46376246 Msa1157390:CDS 30.0%
! CTTAATAAGGTGTTCAATGT+TGG - chr7_4:46376339-46376358 None:intergenic 30.0%
CAACATTGAACACCTTATTA+AGG + chr7_4:46376337-46376356 Msa1157390:intron 30.0%
CATCTTCACAATCCAATAAT+TGG - chr7_4:46376596-46376615 None:intergenic 30.0%
! TCTTTGGTCTTTCTATTGAA+AGG + chr7_4:46376625-46376644 Msa1157390:intron 30.0%
TTAAAGACTAAGTGCATGTT+TGG + chr7_4:46376841-46376860 Msa1157390:intron 30.0%
AGTAGTTATGCTATCAATAG+TGG + chr7_4:46377376-46377395 Msa1157390:intron 30.0%
GATTGGATCACTCATATTAT+TGG - chr7_4:46377440-46377459 None:intergenic 30.0%
!! TTGTAATAAAAGAAGGTGCT+AGG - chr7_4:46377655-46377674 None:intergenic 30.0%
TGTAGCATTTACCAAAATCA+CGG + chr7_4:46377791-46377810 Msa1157390:intron 30.0%
! ATGACATTTTACCGTGATTT+TGG - chr7_4:46377805-46377824 None:intergenic 30.0%
TATACGTGCATGTTTGAATT+CGG - chr7_4:46377846-46377865 None:intergenic 30.0%
AGCATGGGATAGTAAAAATT+GGG + chr7_4:46378271-46378290 Msa1157390:CDS 30.0%
! GATTTTCATCACTATCTCTA+AGG - chr7_4:46378325-46378344 None:intergenic 30.0%
!! GATCTTCAAAGAGCACTTAA+AGG + chr7_4:46375012-46375031 Msa1157390:CDS 35.0%
CTGATAAATTGTCGTCTCTT+CGG + chr7_4:46375055-46375074 Msa1157390:CDS 35.0%
AGAGTTTCAGATGAACAAAC+CGG - chr7_4:46375201-46375220 None:intergenic 35.0%
ATTCTATCGAGGACTAAAAG+TGG - chr7_4:46375271-46375290 None:intergenic 35.0%
TCGATCGATAAATTCTATCG+AGG - chr7_4:46375282-46375301 None:intergenic 35.0%
! TCGATCGAAAAATGATGATG+TGG + chr7_4:46375294-46375313 Msa1157390:intron 35.0%
! ATATGCAGAATATGGTCTTG+AGG + chr7_4:46375563-46375582 Msa1157390:intron 35.0%
! TATGCAGAATATGGTCTTGA+GGG + chr7_4:46375564-46375583 Msa1157390:intron 35.0%
TGCCAAATTACACTTTACCA+TGG - chr7_4:46375701-46375720 None:intergenic 35.0%
ATGGTAAAGTGTAATTTGGC+AGG + chr7_4:46375700-46375719 Msa1157390:intron 35.0%
GCTATCATGTGTTCACTTTA+TGG + chr7_4:46375754-46375773 Msa1157390:CDS 35.0%
TGATTCACTGATGATTCCAA+GGG + chr7_4:46375799-46375818 Msa1157390:CDS 35.0%
AACCACATGTGTCATAGAAT+CGG + chr7_4:46376069-46376088 Msa1157390:intron 35.0%
ATTGCTTTCAATGTGAAGTG+CGG + chr7_4:46376102-46376121 Msa1157390:intron 35.0%
TTGTACTATCAGATAGCAAG+AGG + chr7_4:46376194-46376213 Msa1157390:intron 35.0%
TGTACTATCAGATAGCAAGA+GGG + chr7_4:46376195-46376214 Msa1157390:intron 35.0%
!! GATTTGTTACTCAAAGCATC+AGG + chr7_4:46376226-46376245 Msa1157390:CDS 35.0%
TAGTTTCAGCTGGTATTTGA+GGG - chr7_4:46376282-46376301 None:intergenic 35.0%
TTAGTTTCAGCTGGTATTTG+AGG - chr7_4:46376283-46376302 None:intergenic 35.0%
!! GAGATTGATCAAGAAGTACT+TGG - chr7_4:46376451-46376470 None:intergenic 35.0%
AGTACTTCTTGATCAATCTC+TGG + chr7_4:46376451-46376470 Msa1157390:intron 35.0%
GGTCTTTCTATTGAAAGGTA+TGG + chr7_4:46376630-46376649 Msa1157390:intron 35.0%
! ACAGCTGATTTACTTTAGTC+AGG + chr7_4:46376777-46376796 Msa1157390:CDS 35.0%
AGTGATGAGTAAAAGCTGAA+AGG - chr7_4:46376815-46376834 None:intergenic 35.0%
CCATTTAGATTGTGTAAAGC+TGG - chr7_4:46376875-46376894 None:intergenic 35.0%
CCAGCTTTACACAATCTAAA+TGG + chr7_4:46376872-46376891 Msa1157390:intron 35.0%
!! CAATTCTCACTTTTATGAGC+AGG + chr7_4:46377261-46377280 Msa1157390:intron 35.0%
ACATTCTGATAAGCAGTGAT+AGG - chr7_4:46377287-46377306 None:intergenic 35.0%
ATGGAAATTCCTTGAATCCA+AGG + chr7_4:46377351-46377370 Msa1157390:CDS 35.0%
AACTACTAACCTTGGATTCA+AGG - chr7_4:46377363-46377382 None:intergenic 35.0%
GATAGCATAACTACTAACCT+TGG - chr7_4:46377371-46377390 None:intergenic 35.0%
ACTTCTGCAAGAAAGCAAAA+AGG + chr7_4:46377584-46377603 Msa1157390:CDS 35.0%
GGTGATTTCACATAATCACA+TGG + chr7_4:46377740-46377759 Msa1157390:intron 35.0%
TACTTCTTTGATGCAACTTC+AGG - chr7_4:46378008-46378027 None:intergenic 35.0%
!! TCAAAGAAGTACCAGATGTA+TGG + chr7_4:46378017-46378036 Msa1157390:CDS 35.0%
!! CTTACTTTTCTTGCTCCAAA+AGG - chr7_4:46378046-46378065 None:intergenic 35.0%
!!! CTTTTGGAGCAAGAAAAGTA+AGG + chr7_4:46378044-46378063 Msa1157390:intron 35.0%
! GAATTTTGCTAATGATGCAG+AGG + chr7_4:46378167-46378186 Msa1157390:intron 35.0%
AATTGAAATTCAGGTAGGTC+TGG - chr7_4:46378209-46378228 None:intergenic 35.0%
CAGCATGGGATAGTAAAAAT+TGG + chr7_4:46378270-46378289 Msa1157390:CDS 35.0%
!! TCTCTAAGGTGTTCTTTCAA+TGG - chr7_4:46378311-46378330 None:intergenic 35.0%
GGAGTTAACACAACTACTTC+AGG - chr7_4:46374967-46374986 None:intergenic 40.0%
TGCACTGGAATTCTGATTGA+TGG - chr7_4:46374988-46375007 None:intergenic 40.0%
! CTTTGAAGATCAGATTGCAC+TGG - chr7_4:46375003-46375022 None:intergenic 40.0%
GATCAGCTATAGCTGAATTG+CGG + chr7_4:46375410-46375429 Msa1157390:CDS 40.0%
! ATGCAGAATATGGTCTTGAG+GGG + chr7_4:46375565-46375584 Msa1157390:intron 40.0%
AGGGGCTAATAGAATTCAAG+TGG + chr7_4:46375583-46375602 Msa1157390:CDS 40.0%
CTGATTCACTGATGATTCCA+AGG + chr7_4:46375798-46375817 Msa1157390:CDS 40.0%
ATCCGATTCTATGACACATG+TGG - chr7_4:46376074-46376093 None:intergenic 40.0%
GAGACATACTTAGTTTCAGC+TGG - chr7_4:46376292-46376311 None:intergenic 40.0%
!! AATTTTGCCACATGACTTGC+AGG + chr7_4:46376388-46376407 Msa1157390:CDS 40.0%
GCTATAGCTATTCAAGCACT+AGG + chr7_4:46376425-46376444 Msa1157390:CDS 40.0%
! CCAACGAGTCAGTATGATTT+TGG - chr7_4:46376936-46376955 None:intergenic 40.0%
!! CCAAAATCATACTGACTCGT+TGG + chr7_4:46376933-46376952 Msa1157390:intron 40.0%
GTGAGAATTGAGAAATGGAC+TGG - chr7_4:46377251-46377270 None:intergenic 40.0%
TCAGAATGTGACTTCAACCA+AGG + chr7_4:46377298-46377317 Msa1157390:CDS 40.0%
CAGAATGTGACTTCAACCAA+GGG + chr7_4:46377299-46377318 Msa1157390:CDS 40.0%
AGCATCTCAGGTTCATCAAA+TGG + chr7_4:46377332-46377351 Msa1157390:CDS 40.0%
TAGGAAACATACCTTGTCAC+TGG - chr7_4:46377636-46377655 None:intergenic 40.0%
!! CCAAAAGGTATCCATACATC+TGG - chr7_4:46378031-46378050 None:intergenic 40.0%
! CCAGATGTATGGATACCTTT+TGG + chr7_4:46378028-46378047 Msa1157390:CDS 40.0%
TCAGGCAATTCATACTCATC+TGG - chr7_4:46378242-46378261 None:intergenic 40.0%
TCTTCGGAACCAGATTGTGT+TGG + chr7_4:46375071-46375090 Msa1157390:CDS 45.0%
CTTCTGCTACCAACACAATC+TGG - chr7_4:46375083-46375102 None:intergenic 45.0%
!! GTGTTGGTAGCAGAAGATAC+CGG + chr7_4:46375087-46375106 Msa1157390:CDS 45.0%
CATCTGCTACAAGCACAATC+TGG - chr7_4:46375175-46375194 None:intergenic 45.0%
GTGCTTGTAGCAGATGATAC+CGG + chr7_4:46375179-46375198 Msa1157390:intron 45.0%
CTATCGAGGACTAAAAGTGG+AGG - chr7_4:46375268-46375287 None:intergenic 45.0%
ACCATTCAGACTCTGGATTC+AGG + chr7_4:46375822-46375841 Msa1157390:CDS 45.0%
CCATTCAGACTCTGGATTCA+GGG + chr7_4:46375823-46375842 Msa1157390:CDS 45.0%
! AGAGCAATGATGCACTGACA+TGG + chr7_4:46375973-46375992 Msa1157390:intron 45.0%
!! AGTGCGGTGTTGCATAGAAT+CGG + chr7_4:46376118-46376137 Msa1157390:intron 45.0%
TTTGCCTAACACAGAACTCC+AGG - chr7_4:46376255-46376274 None:intergenic 45.0%
TAGGGAACTGAGATTCAGCT+TGG + chr7_4:46376697-46376716 Msa1157390:intron 45.0%
! TCTTGCTGTGGACAGTCAAA+AGG + chr7_4:46376720-46376739 Msa1157390:CDS 45.0%
AGGCAACTTTGTCTGTGAAG+AGG + chr7_4:46376740-46376759 Msa1157390:CDS 45.0%
CAACTTTGTCTGTGAAGAGG+AGG + chr7_4:46376743-46376762 Msa1157390:CDS 45.0%
TTTGTCTGTGAAGAGGAGGA+TGG + chr7_4:46376747-46376766 Msa1157390:CDS 45.0%
CTTGCGGTAAGTGCATGTTA+CGG - chr7_4:46376981-46377000 None:intergenic 45.0%
CGTTTGCTCGTCAAATCTTG+CGG - chr7_4:46376997-46377016 None:intergenic 45.0%
GCTACAGCTTACTACTACCA+TGG + chr7_4:46377489-46377508 Msa1157390:CDS 45.0%
TGCAAGACAAAAGCTCAAGC+AGG - chr7_4:46377610-46377629 None:intergenic 45.0%
AGTTTCATGACACCCCAAAG+TGG - chr7_4:46377969-46377988 None:intergenic 45.0%
TGCCTGAAATTGATGCAGCA+TGG + chr7_4:46378255-46378274 Msa1157390:CDS 45.0%
GCCTGAAATTGATGCAGCAT+GGG + chr7_4:46378256-46378275 Msa1157390:CDS 45.0%
TCCCATGCTGCATCAATTTC+AGG - chr7_4:46378260-46378279 None:intergenic 45.0%
!! GAGTTCTTTGGTGGTGCAGA+TGG + chr7_4:46375388-46375407 Msa1157390:intron 50.0%
CCCTGAATCCAGAGTCTGAA+TGG - chr7_4:46375826-46375845 None:intergenic 50.0%
! GGTTGTGTCTGCAGGTTTTG+TGG + chr7_4:46375844-46375863 Msa1157390:intron 50.0%
! ACTCAAAGCATCAGGGTACC+TGG + chr7_4:46376234-46376253 Msa1157390:CDS 50.0%
GGTACCTGGAGTTCTGTGTT+AGG + chr7_4:46376248-46376267 Msa1157390:CDS 50.0%
! TTTGCCACATGACTTGCAGG+AGG + chr7_4:46376391-46376410 Msa1157390:CDS 50.0%
! TTGCCACATGACTTGCAGGA+GGG + chr7_4:46376392-46376411 Msa1157390:CDS 50.0%
!! GATTCAGCTTGGTCTTGCTG+TGG + chr7_4:46376708-46376727 Msa1157390:CDS 50.0%
CGGTAAGTGCATGTTACGGT+TGG - chr7_4:46376977-46376996 None:intergenic 50.0%
TGTGACTTCAACCAAGGGCA+TGG + chr7_4:46377304-46377323 Msa1157390:CDS 50.0%
GATGCTTCTTTCCATGCCCT+TGG - chr7_4:46377318-46377337 None:intergenic 50.0%
!! GGCATGGAAAGAAGCATCTC+AGG + chr7_4:46377320-46377339 Msa1157390:CDS 50.0%
CATGGTCTGATCCTCGACAA+GGG + chr7_4:46377507-46377526 Msa1157390:CDS 50.0%
TCGGTTCATTACCCTTGTCG+AGG - chr7_4:46377521-46377540 None:intergenic 50.0%
ACCGAGCAGTCACATTCTTG+CGG + chr7_4:46377536-46377555 Msa1157390:CDS 50.0%
ACCGCAAGAATGTGACTGCT+CGG - chr7_4:46377540-46377559 None:intergenic 50.0%
! TGTTTAGGGCTCCTCCACTT+TGG + chr7_4:46377952-46377971 Msa1157390:intron 50.0%
! GTTTAGGGCTCCTCCACTTT+GGG + chr7_4:46377953-46377972 Msa1157390:intron 50.0%
! TTTAGGGCTCCTCCACTTTG+GGG + chr7_4:46377954-46377973 Msa1157390:intron 50.0%
TTCATGACACCCCAAAGTGG+AGG - chr7_4:46377966-46377985 None:intergenic 50.0%
GTAGGTCTGGCAATGCTTGA+TGG - chr7_4:46378196-46378215 None:intergenic 50.0%
GGCTATGCTGACACTGTCTG+AGG + chr7_4:46375775-46375794 Msa1157390:CDS 55.0%
CCAGAGTCTGAATGGTCCCT+TGG - chr7_4:46375818-46375837 None:intergenic 55.0%
CCAAGGGACCATTCAGACTC+TGG + chr7_4:46375815-46375834 Msa1157390:CDS 55.0%
GGATTCAGGGTTGTGTCTGC+AGG + chr7_4:46375836-46375855 Msa1157390:CDS 55.0%
! TGCCACATGACTTGCAGGAG+GGG + chr7_4:46376393-46376412 Msa1157390:CDS 55.0%
! TGACTTGCAGGAGGGGGTAT+TGG + chr7_4:46376400-46376419 Msa1157390:CDS 55.0%
CCTTGTCGAGGATCAGACCA+TGG - chr7_4:46377509-46377528 None:intergenic 55.0%
CCATGGTCTGATCCTCGACA+AGG + chr7_4:46377506-46377525 Msa1157390:CDS 55.0%
GTCTTGCAGCTCCAGTGACA+AGG + chr7_4:46377622-46377641 Msa1157390:CDS 55.0%
! GCCACATGACTTGCAGGAGG+GGG + chr7_4:46376394-46376413 Msa1157390:CDS 60.0%
ACCCCCTCCTGCAAGTCATG+TGG - chr7_4:46376398-46376417 None:intergenic 60.0%
!! CTTGCAGGAGGGGGTATTGG+AGG + chr7_4:46376403-46376422 Msa1157390:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 46374919 46378355 46374919 ID=Msa1157390;Name=Msa1157390
chr7_4 mRNA 46374919 46378355 46374919 ID=Msa1157390-mRNA-1;Parent=Msa1157390;Name=Msa1157390-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|11|0|412
chr7_4 exon 46374919 46375108 46374919 ID=Msa1157390-mRNA-1:exon:12098;Parent=Msa1157390-mRNA-1
chr7_4 exon 46375407 46375481 46375407 ID=Msa1157390-mRNA-1:exon:12099;Parent=Msa1157390-mRNA-1
chr7_4 exon 46375571 46375629 46375571 ID=Msa1157390-mRNA-1:exon:12100;Parent=Msa1157390-mRNA-1
chr7_4 exon 46375722 46375857 46375722 ID=Msa1157390-mRNA-1:exon:12101;Parent=Msa1157390-mRNA-1
chr7_4 exon 46376206 46376302 46376206 ID=Msa1157390-mRNA-1:exon:12102;Parent=Msa1157390-mRNA-1
chr7_4 exon 46376385 46376451 46376385 ID=Msa1157390-mRNA-1:exon:12103;Parent=Msa1157390-mRNA-1
chr7_4 exon 46376700 46376798 46376700 ID=Msa1157390-mRNA-1:exon:12104;Parent=Msa1157390-mRNA-1
chr7_4 exon 46377283 46377372 46377283 ID=Msa1157390-mRNA-1:exon:12105;Parent=Msa1157390-mRNA-1
chr7_4 exon 46377489 46377643 46377489 ID=Msa1157390-mRNA-1:exon:12106;Parent=Msa1157390-mRNA-1
chr7_4 exon 46377959 46378060 46377959 ID=Msa1157390-mRNA-1:exon:12107;Parent=Msa1157390-mRNA-1
chr7_4 exon 46378187 46378355 46378187 ID=Msa1157390-mRNA-1:exon:12108;Parent=Msa1157390-mRNA-1
chr7_4 CDS 46374919 46375108 46374919 ID=Msa1157390-mRNA-1:cds;Parent=Msa1157390-mRNA-1
chr7_4 CDS 46375407 46375481 46375407 ID=Msa1157390-mRNA-1:cds;Parent=Msa1157390-mRNA-1
chr7_4 CDS 46375571 46375629 46375571 ID=Msa1157390-mRNA-1:cds;Parent=Msa1157390-mRNA-1
chr7_4 CDS 46375722 46375857 46375722 ID=Msa1157390-mRNA-1:cds;Parent=Msa1157390-mRNA-1
chr7_4 CDS 46376206 46376302 46376206 ID=Msa1157390-mRNA-1:cds;Parent=Msa1157390-mRNA-1
chr7_4 CDS 46376385 46376451 46376385 ID=Msa1157390-mRNA-1:cds;Parent=Msa1157390-mRNA-1
chr7_4 CDS 46376700 46376798 46376700 ID=Msa1157390-mRNA-1:cds;Parent=Msa1157390-mRNA-1
chr7_4 CDS 46377283 46377372 46377283 ID=Msa1157390-mRNA-1:cds;Parent=Msa1157390-mRNA-1
chr7_4 CDS 46377489 46377643 46377489 ID=Msa1157390-mRNA-1:cds;Parent=Msa1157390-mRNA-1
chr7_4 CDS 46377959 46378060 46377959 ID=Msa1157390-mRNA-1:cds;Parent=Msa1157390-mRNA-1
chr7_4 CDS 46378187 46378355 46378187 ID=Msa1157390-mRNA-1:cds;Parent=Msa1157390-mRNA-1
Gene Sequence

>Msa1157390

ATGGGGTGCACTTATTCTGTGTATAAGAAGAAGAAATCAAGCTTTCCTGAAGTAGTTGTGTTAACTCCATCAATCAGAATTCCAGTGCAATCTGATCTTCAAAGAGCACTTAAAGGATTAGTTCCAAAGGATCTTGCTGATAAATTGTCGTCTCTTCGGAACCAGATTGTGTTGGTAGCAGAAGATACCGATGGATCAGCTATAGCTGAATTGCGGCGAGCTTTGAATGAGTACTTGTCTTTTCTAATTGGACTTACTAAGAAAGAATATGGTCTTGAGGGGCTAATAGAATTCAAGTGGAAAAACTTTGAAGTTGGAAAACAAGATAGTAGTATATCAAATGTGTGGTTTGAGGTGCTATCATGTGTTCACTTTATGGCTATGCTGACACTGTCTGAGGCTGATTCACTGATGATTCCAAGGGACCATTCAGACTCTGGATTCAGGGTTGTGTCTGCAGATAGCAAGAGGGAAGCAATTGATTTGTTACTCAAAGCATCAGGGTACCTGGAGTTCTGTGTTAGGCAAATTCTCCCTCAAATACCAGCTGAAACTAAGAAAATTTTGCCACATGACTTGCAGGAGGGGGTATTGGAGGCTATAGCTATTCAAGCACTAGGCCAAGGAACTGAGATTCAGCTTGGTCTTGCTGTGGACAGTCAAAAGGCAACTTTGTCTGTGAAGAGGAGGATGGCATGTGAACAGCTGATTTACTTTAGTCAGGCCTATCACTGCTTATCAGAATGTGACTTCAACCAAGGGCATGGAAAGAAGCATCTCAGGTTCATCAAATGGAAATTCCTTGAATCCAAGGCTACAGCTTACTACTACCATGGTCTGATCCTCGACAAGGGTAATGAACCGAGCAGTCACATTCTTGCGGTGTCTTGTTTTCTTGCTGCAGAAGAACTTCTGCAAGAAAGCAAAAAGGCCTGCTTGAGCTTTTGTCTTGCAGCTCCAGTGACAAGGGCTCCTCCACTTTGGGGTGTCATGAAACTTCTAAATCAAAAAATTCCTGAAGTTGCATCAAAGAAGTACCAGATGTATGGATACCTTTTGGAGCAAGAAAAAGGTCTCCATCAAGCATTGCCAGACCTACCTGAATTTCAATTATCATTACATCCAGATGAGTATGAATTGCCTGAAATTGATGCAGCATGGGATAGTAAAAATTGGGAAACATTAGGACAACCATTGAAAGAACACCTTAGAGATAGTGATGAAAATCCAACTGATTGA

Protein sequence

>Msa1157390

MGCTYSVYKKKKSSFPEVVVLTPSIRIPVQSDLQRALKGLVPKDLADKLSSLRNQIVLVAEDTDGSAIAELRRALNEYLSFLIGLTKKEYGLEGLIEFKWKNFEVGKQDSSISNVWFEVLSCVHFMAMLTLSEADSLMIPRDHSDSGFRVVSADSKREAIDLLLKASGYLEFCVRQILPQIPAETKKILPHDLQEGVLEAIAIQALGQGTEIQLGLAVDSQKATLSVKRRMACEQLIYFSQAYHCLSECDFNQGHGKKHLRFIKWKFLESKATAYYYHGLILDKGNEPSSHILAVSCFLAAEELLQESKKACLSFCLAAPVTRAPPLWGVMKLLNQKIPEVASKKYQMYGYLLEQEKGLHQALPDLPEFQLSLHPDEYELPEIDAAWDSKNWETLGQPLKEHLRDSDENPTD*