Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1033760 | XP_003625051.2 | 95.769 | 260 | 10 | 1 | 1 | 259 | 1 | 260 | 1.38e-154 | 441 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1033760 | sp|Q9M1K1|ORG2_ARATH | 42.412 | 257 | 127 | 9 | 1 | 243 | 1 | 250 | 1.27e-51 | 171 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1033760 | G7KRQ0 | 95.769 | 260 | 10 | 1 | 1 | 259 | 1 | 260 | 6.58e-155 | 441 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1033760 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1033760 | Msa1160170 | 0.955403 | 3.289448e-113 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1033760 | MtrunA17_Chr7g0256671 | 95.769 | 260 | 10 | 1 | 1 | 259 | 1 | 260 | 1.27e-158 | 441 |
| Msa1033760 | MtrunA17_Chr1g0170581 | 57.769 | 251 | 86 | 6 | 1 | 241 | 1 | 241 | 1.04e-80 | 243 |
| Msa1033760 | MtrunA17_Chr1g0170591 | 55.823 | 249 | 88 | 5 | 1 | 242 | 1 | 234 | 1.37e-80 | 242 |
| Msa1033760 | MtrunA17_Chr1g0170571 | 57.661 | 248 | 83 | 5 | 1 | 241 | 1 | 233 | 2.08e-77 | 234 |
| Msa1033760 | MtrunA17_Chr6g0474681 | 34.211 | 152 | 91 | 4 | 66 | 215 | 6 | 150 | 1.37e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1033760 | AT3G56970.1 | 42.412 | 257 | 127 | 9 | 1 | 243 | 1 | 250 | 1.29e-52 | 171 |
| Msa1033760 | AT3G56980.1 | 41.445 | 263 | 132 | 7 | 1 | 246 | 1 | 258 | 8.39e-47 | 157 |
| Msa1033760 | AT2G41240.1 | 40.726 | 248 | 127 | 7 | 1 | 240 | 1 | 236 | 4.18e-43 | 147 |
| Msa1033760 | AT2G41240.2 | 40.323 | 248 | 127 | 8 | 1 | 240 | 1 | 235 | 1.16e-40 | 140 |
| Msa1033760 | AT5G04150.2 | 44.048 | 168 | 85 | 3 | 56 | 219 | 76 | 238 | 8.09e-37 | 130 |
| Msa1033760 | AT5G04150.1 | 41.667 | 180 | 96 | 3 | 56 | 231 | 76 | 250 | 1.80e-36 | 130 |
Find 36 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTCTTTATGACTAATTA+AGG | 0.218000 | 7_1:-68998078 | None:intergenic |
| AGCTTCTTAGCCATAAGTTT+AGG | 0.275147 | 7_1:-68998185 | None:intergenic |
| TCACTTCGTTCACTTCTTCC+TGG | 0.286326 | 7_1:+68998263 | Msa1033760:CDS |
| GCTTCTTAGCCATAAGTTTA+GGG | 0.291086 | 7_1:-68998184 | None:intergenic |
| AAATAATCATTTGGGCACTA+TGG | 0.310932 | 7_1:+68999705 | Msa1033760:CDS |
| TCTTCTTCTTCTAAAACCTT+TGG | 0.334379 | 7_1:+68999353 | Msa1033760:CDS |
| AAGACACGTGAAATTGTTAC+AGG | 0.334795 | 7_1:-68999062 | None:intergenic |
| GCCACAATCCCCTAAACTTA+TGG | 0.343588 | 7_1:+68998175 | Msa1033760:CDS |
| TCAATCTCAACATGTTCCTT+TGG | 0.352411 | 7_1:-68998149 | None:intergenic |
| TTGATGTGTTTAGAAAATAA+TGG | 0.374175 | 7_1:+68999314 | Msa1033760:CDS |
| AAACATGGGATGGCTCTTAG+AGG | 0.417919 | 7_1:+68998040 | Msa1033760:CDS |
| GGTGAAGAGAATTGATGATA+AGG | 0.444850 | 7_1:-68998128 | None:intergenic |
| GGGATGGCTCTTAGAGGAGT+TGG | 0.478368 | 7_1:+68998046 | Msa1033760:CDS |
| CTCAGATAGAGGAATCTTGT+AGG | 0.481665 | 7_1:-68999288 | None:intergenic |
| TCTTCTTCTAAAACCTTTGG+AGG | 0.482465 | 7_1:+68999356 | Msa1033760:CDS |
| CACATCAAGATCTCAGATAG+AGG | 0.501569 | 7_1:-68999299 | None:intergenic |
| GCCATAAGTTTAGGGGATTG+TGG | 0.507590 | 7_1:-68998176 | None:intergenic |
| CTTCTAAAACCTTTGGAGGG+AGG | 0.546758 | 7_1:+68999360 | Msa1033760:CDS |
| ACGTGTCTTAAAATACATAC+CGG | 0.551566 | 7_1:+68999076 | Msa1033760:CDS |
| TCTTCCTGGTGAAGATCAAA+CGG | 0.553586 | 7_1:+68998277 | Msa1033760:CDS |
| ACAAAAGCAGAATTGTAACT+TGG | 0.558897 | 7_1:-68999206 | None:intergenic |
| CTTCTTAGCCATAAGTTTAG+GGG | 0.566289 | 7_1:-68998183 | None:intergenic |
| CTTCTTCTAAAACCTTTGGA+GGG | 0.566421 | 7_1:+68999357 | Msa1033760:CDS |
| ATAGAAGAGCCTCCCTCCAA+AGG | 0.569392 | 7_1:-68999369 | None:intergenic |
| TCATCAATTCTCTTCACCAA+AGG | 0.579398 | 7_1:+68998133 | Msa1033760:CDS |
| GAGTTCTCATACTCAAACAT+GGG | 0.591739 | 7_1:+68998026 | Msa1033760:CDS |
| TCTCATACTCAAACATGGGA+TGG | 0.596383 | 7_1:+68998030 | Msa1033760:CDS |
| TGAGTTCTCATACTCAAACA+TGG | 0.598383 | 7_1:+68998025 | Msa1033760:CDS |
| GATTTACAAAAGCAAGTGCA+AGG | 0.608962 | 7_1:+68999098 | Msa1033760:CDS |
| TTTGAGTATGAGAACTCAGG+TGG | 0.609689 | 7_1:-68998020 | None:intergenic |
| ATGTTTGAGTATGAGAACTC+AGG | 0.624831 | 7_1:-68998023 | None:intergenic |
| AGACACGTGAAATTGTTACA+GGG | 0.628066 | 7_1:-68999061 | None:intergenic |
| ATTACCGTTTGATCTTCACC+AGG | 0.645561 | 7_1:-68998281 | None:intergenic |
| CAGTTAACAAAGAATCGCAA+AGG | 0.655004 | 7_1:+68999174 | Msa1033760:CDS |
| GATCACGTTCACTAGCATTG+TGG | 0.694395 | 7_1:-68998211 | None:intergenic |
| TTGAGTATGAGAACTCAGGT+GGG | 0.707297 | 7_1:-68998019 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTTTTTCAAATAGAT+TGG | - | chr7_1:68998644-68998663 | None:intergenic | 10.0% |
| !! | TGGAATAATATATATATTAA+TGG | - | chr7_1:68999013-68999032 | None:intergenic | 10.0% |
| !!! | AATTTTTTTTTCAAATAGAT+TGG | - | chr7_1:68998644-68998663 | None:intergenic | 10.0% |
| !! | TGGAATAATATATATATTAA+TGG | - | chr7_1:68999013-68999032 | None:intergenic | 10.0% |
| !! | CATACCAAATTAAATAAAAT+TGG | - | chr7_1:68998324-68998343 | None:intergenic | 15.0% |
| !!! | CAATTTTATTTAATTTGGTA+TGG | + | chr7_1:68998322-68998341 | Msa1033760:intron | 15.0% |
| !! | CATACCAAATTAAATAAAAT+TGG | - | chr7_1:68998324-68998343 | None:intergenic | 15.0% |
| !!! | CAATTTTATTTAATTTGGTA+TGG | + | chr7_1:68998322-68998341 | Msa1033760:intron | 15.0% |
| !! | CCAAATTAAATAAAATTGGA+AGG | - | chr7_1:68998320-68998339 | None:intergenic | 20.0% |
| !!! | CCTTCCAATTTTATTTAATT+TGG | + | chr7_1:68998317-68998336 | Msa1033760:intron | 20.0% |
| !!! | AAGCTATTTTTTAAAATGAC+AGG | + | chr7_1:68998399-68998418 | Msa1033760:intron | 20.0% |
| !!! | ATAGATTGGTTAGTTTTTTT+TGG | - | chr7_1:68998630-68998649 | None:intergenic | 20.0% |
| !!! | TAACCTACTTTAAGAAAAAA+GGG | + | chr7_1:68998806-68998825 | Msa1033760:intron | 20.0% |
| !! | TTGATGTGTTTAGAAAATAA+TGG | + | chr7_1:68999314-68999333 | Msa1033760:CDS | 20.0% |
| !! | AAGCAGAAAAATAATCATTT+GGG | + | chr7_1:68999697-68999716 | Msa1033760:CDS | 20.0% |
| !! | CCAAATTAAATAAAATTGGA+AGG | - | chr7_1:68998320-68998339 | None:intergenic | 20.0% |
| !!! | CCTTCCAATTTTATTTAATT+TGG | + | chr7_1:68998317-68998336 | Msa1033760:intron | 20.0% |
| !!! | AAGCTATTTTTTAAAATGAC+AGG | + | chr7_1:68998399-68998418 | Msa1033760:intron | 20.0% |
| !!! | ATAGATTGGTTAGTTTTTTT+TGG | - | chr7_1:68998630-68998649 | None:intergenic | 20.0% |
| !!! | TAACCTACTTTAAGAAAAAA+GGG | + | chr7_1:68998806-68998825 | Msa1033760:intron | 20.0% |
| !! | TTGATGTGTTTAGAAAATAA+TGG | + | chr7_1:68999314-68999333 | Msa1033760:CDS | 20.0% |
| !! | AAGCAGAAAAATAATCATTT+GGG | + | chr7_1:68999697-68999716 | Msa1033760:CDS | 20.0% |
| ! | CTTCTCTTTATGACTAATTA+AGG | - | chr7_1:68998081-68998100 | None:intergenic | 25.0% |
| !!! | TTTAGCTTTATATAACTCCA+TGG | + | chr7_1:68998428-68998447 | Msa1033760:intron | 25.0% |
| ! | ATGTGCAAAAAAATTAGTGA+TGG | + | chr7_1:68998713-68998732 | Msa1033760:intron | 25.0% |
| ! | ATAGCTAATCGTTCTTTAAA+AGG | + | chr7_1:68998761-68998780 | Msa1033760:intron | 25.0% |
| !! | GTAACCTACTTTAAGAAAAA+AGG | + | chr7_1:68998805-68998824 | Msa1033760:intron | 25.0% |
| ! | ACCCTAATTGTTTACTATTA+AGG | + | chr7_1:68999531-68999550 | Msa1033760:intron | 25.0% |
| ! | CCCTTAATAGTAAACAATTA+GGG | - | chr7_1:68999535-68999554 | None:intergenic | 25.0% |
| ! | CCCTAATTGTTTACTATTAA+GGG | + | chr7_1:68999532-68999551 | Msa1033760:intron | 25.0% |
| ! | TCCCTTAATAGTAAACAATT+AGG | - | chr7_1:68999536-68999555 | None:intergenic | 25.0% |
| !!! | ATTTATTTTGCAATGTTTGC+AGG | + | chr7_1:68999612-68999631 | Msa1033760:intron | 25.0% |
| ! | GAAGCAGAAAAATAATCATT+TGG | + | chr7_1:68999696-68999715 | Msa1033760:CDS | 25.0% |
| ! | CTTCTCTTTATGACTAATTA+AGG | - | chr7_1:68998081-68998100 | None:intergenic | 25.0% |
| !!! | TTTAGCTTTATATAACTCCA+TGG | + | chr7_1:68998428-68998447 | Msa1033760:intron | 25.0% |
| ! | ATGTGCAAAAAAATTAGTGA+TGG | + | chr7_1:68998713-68998732 | Msa1033760:intron | 25.0% |
| ! | ATAGCTAATCGTTCTTTAAA+AGG | + | chr7_1:68998761-68998780 | Msa1033760:intron | 25.0% |
| !! | GTAACCTACTTTAAGAAAAA+AGG | + | chr7_1:68998805-68998824 | Msa1033760:intron | 25.0% |
| ! | ACCCTAATTGTTTACTATTA+AGG | + | chr7_1:68999531-68999550 | Msa1033760:intron | 25.0% |
| ! | CCCTTAATAGTAAACAATTA+GGG | - | chr7_1:68999535-68999554 | None:intergenic | 25.0% |
| ! | CCCTAATTGTTTACTATTAA+GGG | + | chr7_1:68999532-68999551 | Msa1033760:intron | 25.0% |
| ! | TCCCTTAATAGTAAACAATT+AGG | - | chr7_1:68999536-68999555 | None:intergenic | 25.0% |
| !!! | ATTTATTTTGCAATGTTTGC+AGG | + | chr7_1:68999612-68999631 | Msa1033760:intron | 25.0% |
| ! | GAAGCAGAAAAATAATCATT+TGG | + | chr7_1:68999696-68999715 | Msa1033760:CDS | 25.0% |
| CTAGAGATAAGCATAATCAT+AGG | - | chr7_1:68998479-68998498 | None:intergenic | 30.0% | |
| CTATGATTATGCTTATCTCT+AGG | + | chr7_1:68998477-68998496 | Msa1033760:intron | 30.0% | |
| !! | AAGAGTTTTGATCTGACTAT+TGG | + | chr7_1:68998528-68998547 | Msa1033760:intron | 30.0% |
| CCAATAATTGATTAATCCAG+AGG | - | chr7_1:68998584-68998603 | None:intergenic | 30.0% | |
| CCTCTGGATTAATCAATTAT+TGG | + | chr7_1:68998581-68998600 | Msa1033760:intron | 30.0% | |
| !!! | ACACCCTTTTTTCTTAAAGT+AGG | - | chr7_1:68998812-68998831 | None:intergenic | 30.0% |
| ! | CTGTTTGTTTCGTAATGTTT+TGG | + | chr7_1:68998860-68998879 | Msa1033760:intron | 30.0% |
| TGACGTATTCATGATATGAA+TGG | + | chr7_1:68998936-68998955 | Msa1033760:intron | 30.0% | |
| !!! | TTTTTTCTGCAACATCAACA+TGG | - | chr7_1:68999033-68999052 | None:intergenic | 30.0% |
| ACGTGTCTTAAAATACATAC+CGG | + | chr7_1:68999076-68999095 | Msa1033760:CDS | 30.0% | |
| ACAAAAGCAGAATTGTAACT+TGG | - | chr7_1:68999209-68999228 | None:intergenic | 30.0% | |
| !! | TCTTCTTCTTCTAAAACCTT+TGG | + | chr7_1:68999353-68999372 | Msa1033760:CDS | 30.0% |
| !! | CTTCTATAACTTGCATTTTC+AGG | + | chr7_1:68999385-68999404 | Msa1033760:CDS | 30.0% |
| AAATAATCATTTGGGCACTA+TGG | + | chr7_1:68999705-68999724 | Msa1033760:CDS | 30.0% | |
| CTAGAGATAAGCATAATCAT+AGG | - | chr7_1:68998479-68998498 | None:intergenic | 30.0% | |
| CTATGATTATGCTTATCTCT+AGG | + | chr7_1:68998477-68998496 | Msa1033760:intron | 30.0% | |
| !! | AAGAGTTTTGATCTGACTAT+TGG | + | chr7_1:68998528-68998547 | Msa1033760:intron | 30.0% |
| CCAATAATTGATTAATCCAG+AGG | - | chr7_1:68998584-68998603 | None:intergenic | 30.0% | |
| CCTCTGGATTAATCAATTAT+TGG | + | chr7_1:68998581-68998600 | Msa1033760:intron | 30.0% | |
| !!! | ACACCCTTTTTTCTTAAAGT+AGG | - | chr7_1:68998812-68998831 | None:intergenic | 30.0% |
| ! | CTGTTTGTTTCGTAATGTTT+TGG | + | chr7_1:68998860-68998879 | Msa1033760:intron | 30.0% |
| TGACGTATTCATGATATGAA+TGG | + | chr7_1:68998936-68998955 | Msa1033760:intron | 30.0% | |
| !!! | TTTTTTCTGCAACATCAACA+TGG | - | chr7_1:68999033-68999052 | None:intergenic | 30.0% |
| ACGTGTCTTAAAATACATAC+CGG | + | chr7_1:68999076-68999095 | Msa1033760:CDS | 30.0% | |
| ACAAAAGCAGAATTGTAACT+TGG | - | chr7_1:68999209-68999228 | None:intergenic | 30.0% | |
| !! | TCTTCTTCTTCTAAAACCTT+TGG | + | chr7_1:68999353-68999372 | Msa1033760:CDS | 30.0% |
| !! | CTTCTATAACTTGCATTTTC+AGG | + | chr7_1:68999385-68999404 | Msa1033760:CDS | 30.0% |
| AAATAATCATTTGGGCACTA+TGG | + | chr7_1:68999705-68999724 | Msa1033760:CDS | 30.0% | |
| ATGTTTGAGTATGAGAACTC+AGG | - | chr7_1:68998026-68998045 | None:intergenic | 35.0% | |
| TGAGTTCTCATACTCAAACA+TGG | + | chr7_1:68998025-68998044 | Msa1033760:CDS | 35.0% | |
| GAGTTCTCATACTCAAACAT+GGG | + | chr7_1:68998026-68998045 | Msa1033760:CDS | 35.0% | |
| ! | GGTGAAGAGAATTGATGATA+AGG | - | chr7_1:68998131-68998150 | None:intergenic | 35.0% |
| TCATCAATTCTCTTCACCAA+AGG | + | chr7_1:68998133-68998152 | Msa1033760:CDS | 35.0% | |
| TCAATCTCAACATGTTCCTT+TGG | - | chr7_1:68998152-68998171 | None:intergenic | 35.0% | |
| CTTCTTAGCCATAAGTTTAG+GGG | - | chr7_1:68998186-68998205 | None:intergenic | 35.0% | |
| GCTTCTTAGCCATAAGTTTA+GGG | - | chr7_1:68998187-68998206 | None:intergenic | 35.0% | |
| AGCTTCTTAGCCATAAGTTT+AGG | - | chr7_1:68998188-68998207 | None:intergenic | 35.0% | |
| GCTTTATATAACTCCATGGT+TGG | + | chr7_1:68998432-68998451 | Msa1033760:intron | 35.0% | |
| ! | TAGGTCTGATGATGAAAGTT+TGG | + | chr7_1:68998496-68998515 | Msa1033760:intron | 35.0% |
| AGACACGTGAAATTGTTACA+GGG | - | chr7_1:68999064-68999083 | None:intergenic | 35.0% | |
| AAGACACGTGAAATTGTTAC+AGG | - | chr7_1:68999065-68999084 | None:intergenic | 35.0% | |
| !! | TGCACTTGCTTTTGTAAATC+CGG | - | chr7_1:68999098-68999117 | None:intergenic | 35.0% |
| GATTTACAAAAGCAAGTGCA+AGG | + | chr7_1:68999098-68999117 | Msa1033760:CDS | 35.0% | |
| CAGTTAACAAAGAATCGCAA+AGG | + | chr7_1:68999174-68999193 | Msa1033760:CDS | 35.0% | |
| ! | CTTTTGTAGTTTCGACAAGT+AGG | + | chr7_1:68999222-68999241 | Msa1033760:CDS | 35.0% |
| !! | TCTTCTTCTAAAACCTTTGG+AGG | + | chr7_1:68999356-68999375 | Msa1033760:CDS | 35.0% |
| !! | CTTCTTCTAAAACCTTTGGA+GGG | + | chr7_1:68999357-68999376 | Msa1033760:CDS | 35.0% |
| ! | TATTTTGCAATGTTTGCAGG+TGG | + | chr7_1:68999615-68999634 | Msa1033760:intron | 35.0% |
| ATGTTTGAGTATGAGAACTC+AGG | - | chr7_1:68998026-68998045 | None:intergenic | 35.0% | |
| TGAGTTCTCATACTCAAACA+TGG | + | chr7_1:68998025-68998044 | Msa1033760:CDS | 35.0% | |
| GAGTTCTCATACTCAAACAT+GGG | + | chr7_1:68998026-68998045 | Msa1033760:CDS | 35.0% | |
| ! | GGTGAAGAGAATTGATGATA+AGG | - | chr7_1:68998131-68998150 | None:intergenic | 35.0% |
| TCATCAATTCTCTTCACCAA+AGG | + | chr7_1:68998133-68998152 | Msa1033760:CDS | 35.0% | |
| TCAATCTCAACATGTTCCTT+TGG | - | chr7_1:68998152-68998171 | None:intergenic | 35.0% | |
| CTTCTTAGCCATAAGTTTAG+GGG | - | chr7_1:68998186-68998205 | None:intergenic | 35.0% | |
| GCTTCTTAGCCATAAGTTTA+GGG | - | chr7_1:68998187-68998206 | None:intergenic | 35.0% | |
| AGCTTCTTAGCCATAAGTTT+AGG | - | chr7_1:68998188-68998207 | None:intergenic | 35.0% | |
| GCTTTATATAACTCCATGGT+TGG | + | chr7_1:68998432-68998451 | Msa1033760:intron | 35.0% | |
| ! | TAGGTCTGATGATGAAAGTT+TGG | + | chr7_1:68998496-68998515 | Msa1033760:intron | 35.0% |
| AGACACGTGAAATTGTTACA+GGG | - | chr7_1:68999064-68999083 | None:intergenic | 35.0% | |
| AAGACACGTGAAATTGTTAC+AGG | - | chr7_1:68999065-68999084 | None:intergenic | 35.0% | |
| !! | TGCACTTGCTTTTGTAAATC+CGG | - | chr7_1:68999098-68999117 | None:intergenic | 35.0% |
| GATTTACAAAAGCAAGTGCA+AGG | + | chr7_1:68999098-68999117 | Msa1033760:CDS | 35.0% | |
| CAGTTAACAAAGAATCGCAA+AGG | + | chr7_1:68999174-68999193 | Msa1033760:CDS | 35.0% | |
| ! | CTTTTGTAGTTTCGACAAGT+AGG | + | chr7_1:68999222-68999241 | Msa1033760:CDS | 35.0% |
| !! | TCTTCTTCTAAAACCTTTGG+AGG | + | chr7_1:68999356-68999375 | Msa1033760:CDS | 35.0% |
| !! | CTTCTTCTAAAACCTTTGGA+GGG | + | chr7_1:68999357-68999376 | Msa1033760:CDS | 35.0% |
| ! | TATTTTGCAATGTTTGCAGG+TGG | + | chr7_1:68999615-68999634 | Msa1033760:intron | 35.0% |
| TTGAGTATGAGAACTCAGGT+GGG | - | chr7_1:68998022-68998041 | None:intergenic | 40.0% | |
| TTTGAGTATGAGAACTCAGG+TGG | - | chr7_1:68998023-68998042 | None:intergenic | 40.0% | |
| TCTCATACTCAAACATGGGA+TGG | + | chr7_1:68998030-68998049 | Msa1033760:CDS | 40.0% | |
| TCTTCCTGGTGAAGATCAAA+CGG | + | chr7_1:68998277-68998296 | Msa1033760:CDS | 40.0% | |
| ATTACCGTTTGATCTTCACC+AGG | - | chr7_1:68998284-68998303 | None:intergenic | 40.0% | |
| TTTCATCATCAGACCAACCA+TGG | - | chr7_1:68998448-68998467 | None:intergenic | 40.0% | |
| CTCAGATAGAGGAATCTTGT+AGG | - | chr7_1:68999291-68999310 | None:intergenic | 40.0% | |
| CACATCAAGATCTCAGATAG+AGG | - | chr7_1:68999302-68999321 | None:intergenic | 40.0% | |
| TTGAGTATGAGAACTCAGGT+GGG | - | chr7_1:68998022-68998041 | None:intergenic | 40.0% | |
| TTTGAGTATGAGAACTCAGG+TGG | - | chr7_1:68998023-68998042 | None:intergenic | 40.0% | |
| TCTCATACTCAAACATGGGA+TGG | + | chr7_1:68998030-68998049 | Msa1033760:CDS | 40.0% | |
| TCTTCCTGGTGAAGATCAAA+CGG | + | chr7_1:68998277-68998296 | Msa1033760:CDS | 40.0% | |
| ATTACCGTTTGATCTTCACC+AGG | - | chr7_1:68998284-68998303 | None:intergenic | 40.0% | |
| TTTCATCATCAGACCAACCA+TGG | - | chr7_1:68998448-68998467 | None:intergenic | 40.0% | |
| CTCAGATAGAGGAATCTTGT+AGG | - | chr7_1:68999291-68999310 | None:intergenic | 40.0% | |
| CACATCAAGATCTCAGATAG+AGG | - | chr7_1:68999302-68999321 | None:intergenic | 40.0% | |
| AAACATGGGATGGCTCTTAG+AGG | + | chr7_1:68998040-68998059 | Msa1033760:CDS | 45.0% | |
| GCCACAATCCCCTAAACTTA+TGG | + | chr7_1:68998175-68998194 | Msa1033760:CDS | 45.0% | |
| GCCATAAGTTTAGGGGATTG+TGG | - | chr7_1:68998179-68998198 | None:intergenic | 45.0% | |
| GATCACGTTCACTAGCATTG+TGG | - | chr7_1:68998214-68998233 | None:intergenic | 45.0% | |
| TCACTTCGTTCACTTCTTCC+TGG | + | chr7_1:68998263-68998282 | Msa1033760:CDS | 45.0% | |
| !! | CTTCTAAAACCTTTGGAGGG+AGG | + | chr7_1:68999360-68999379 | Msa1033760:CDS | 45.0% |
| AAACATGGGATGGCTCTTAG+AGG | + | chr7_1:68998040-68998059 | Msa1033760:CDS | 45.0% | |
| GCCACAATCCCCTAAACTTA+TGG | + | chr7_1:68998175-68998194 | Msa1033760:CDS | 45.0% | |
| GCCATAAGTTTAGGGGATTG+TGG | - | chr7_1:68998179-68998198 | None:intergenic | 45.0% | |
| GATCACGTTCACTAGCATTG+TGG | - | chr7_1:68998214-68998233 | None:intergenic | 45.0% | |
| TCACTTCGTTCACTTCTTCC+TGG | + | chr7_1:68998263-68998282 | Msa1033760:CDS | 45.0% | |
| !! | CTTCTAAAACCTTTGGAGGG+AGG | + | chr7_1:68999360-68999379 | Msa1033760:CDS | 45.0% |
| ATAGAAGAGCCTCCCTCCAA+AGG | - | chr7_1:68999372-68999391 | None:intergenic | 50.0% | |
| ATAGAAGAGCCTCCCTCCAA+AGG | - | chr7_1:68999372-68999391 | None:intergenic | 50.0% | |
| GGGATGGCTCTTAGAGGAGT+TGG | + | chr7_1:68998046-68998065 | Msa1033760:CDS | 55.0% | |
| CTATTGGACCCTCGCTAGAG+TGG | + | chr7_1:68998544-68998563 | Msa1033760:intron | 55.0% | |
| GGGATGGCTCTTAGAGGAGT+TGG | + | chr7_1:68998046-68998065 | Msa1033760:CDS | 55.0% | |
| CTATTGGACCCTCGCTAGAG+TGG | + | chr7_1:68998544-68998563 | Msa1033760:intron | 55.0% | |
| TGGACCCTCGCTAGAGTGGA+TGG | + | chr7_1:68998548-68998567 | Msa1033760:intron | 60.0% | |
| ACCCTCGCTAGAGTGGATGG+TGG | + | chr7_1:68998551-68998570 | Msa1033760:intron | 60.0% | |
| CCCACCATCCACTCTAGCGA+GGG | - | chr7_1:68998555-68998574 | None:intergenic | 60.0% | |
| CCCTCGCTAGAGTGGATGGT+GGG | + | chr7_1:68998552-68998571 | Msa1033760:intron | 60.0% | |
| CCTCGCTAGAGTGGATGGTG+GGG | + | chr7_1:68998553-68998572 | Msa1033760:intron | 60.0% | |
| !! | GCTAGAGTGGATGGTGGGGT+TGG | + | chr7_1:68998557-68998576 | Msa1033760:intron | 60.0% |
| TGGACCCTCGCTAGAGTGGA+TGG | + | chr7_1:68998548-68998567 | Msa1033760:intron | 60.0% | |
| ACCCTCGCTAGAGTGGATGG+TGG | + | chr7_1:68998551-68998570 | Msa1033760:intron | 60.0% | |
| CCCACCATCCACTCTAGCGA+GGG | - | chr7_1:68998555-68998574 | None:intergenic | 60.0% | |
| CCCTCGCTAGAGTGGATGGT+GGG | + | chr7_1:68998552-68998571 | Msa1033760:intron | 60.0% | |
| CCTCGCTAGAGTGGATGGTG+GGG | + | chr7_1:68998553-68998572 | Msa1033760:intron | 60.0% | |
| !! | GCTAGAGTGGATGGTGGGGT+TGG | + | chr7_1:68998557-68998576 | Msa1033760:intron | 60.0% |
| CCCCACCATCCACTCTAGCG+AGG | - | chr7_1:68998556-68998575 | None:intergenic | 65.0% | |
| !! | GGATGGTGGGGTTGGTCCTC+TGG | + | chr7_1:68998565-68998584 | Msa1033760:intron | 65.0% |
| CCCCACCATCCACTCTAGCG+AGG | - | chr7_1:68998556-68998575 | None:intergenic | 65.0% | |
| !! | GGATGGTGGGGTTGGTCCTC+TGG | + | chr7_1:68998565-68998584 | Msa1033760:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 68998005 | 68999759 | 68998005 | ID=Msa1033760;Name=Msa1033760 |
| chr7_1 | mRNA | 68998005 | 68999759 | 68998005 | ID=Msa1033760-mRNA-1;Parent=Msa1033760;Name=Msa1033760-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|3|0|259 |
| chr7_1 | exon | 68998005 | 68998298 | 68998005 | ID=Msa1033760-mRNA-1:exon:16203;Parent=Msa1033760-mRNA-1 |
| chr7_1 | exon | 68999047 | 68999406 | 68999047 | ID=Msa1033760-mRNA-1:exon:16204;Parent=Msa1033760-mRNA-1 |
| chr7_1 | exon | 68999634 | 68999759 | 68999634 | ID=Msa1033760-mRNA-1:exon:16205;Parent=Msa1033760-mRNA-1 |
| chr7_1 | CDS | 68998005 | 68998298 | 68998005 | ID=Msa1033760-mRNA-1:cds;Parent=Msa1033760-mRNA-1 |
| chr7_1 | CDS | 68999047 | 68999406 | 68999047 | ID=Msa1033760-mRNA-1:cds;Parent=Msa1033760-mRNA-1 |
| chr7_1 | CDS | 68999634 | 68999759 | 68999634 | ID=Msa1033760-mRNA-1:cds;Parent=Msa1033760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
