Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1160170 | XP_003625051.2 | 95.769 | 260 | 10 | 1 | 1 | 259 | 1 | 260 | 1.38e-154 | 441 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1160170 | sp|Q9M1K1|ORG2_ARATH | 42.412 | 257 | 127 | 9 | 1 | 243 | 1 | 250 | 1.27e-51 | 171 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1160170 | G7KRQ0 | 95.769 | 260 | 10 | 1 | 1 | 259 | 1 | 260 | 6.58e-155 | 441 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1160170 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1033760 | Msa1160170 | 0.955403 | 3.289448e-113 | -8.615850e-47 |
| Msa1114200 | Msa1160170 | 0.861073 | 1.324938e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1160170 | MtrunA17_Chr7g0256671 | 95.769 | 260 | 10 | 1 | 1 | 259 | 1 | 260 | 1.27e-158 | 441 |
| Msa1160170 | MtrunA17_Chr1g0170581 | 57.769 | 251 | 86 | 6 | 1 | 241 | 1 | 241 | 1.04e-80 | 243 |
| Msa1160170 | MtrunA17_Chr1g0170591 | 55.823 | 249 | 88 | 5 | 1 | 242 | 1 | 234 | 1.37e-80 | 242 |
| Msa1160170 | MtrunA17_Chr1g0170571 | 57.661 | 248 | 83 | 5 | 1 | 241 | 1 | 233 | 2.08e-77 | 234 |
| Msa1160170 | MtrunA17_Chr6g0474681 | 34.211 | 152 | 91 | 4 | 66 | 215 | 6 | 150 | 1.37e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1160170 | AT3G56970.1 | 42.412 | 257 | 127 | 9 | 1 | 243 | 1 | 250 | 1.29e-52 | 171 |
| Msa1160170 | AT3G56980.1 | 41.445 | 263 | 132 | 7 | 1 | 246 | 1 | 258 | 8.39e-47 | 157 |
| Msa1160170 | AT2G41240.1 | 40.726 | 248 | 127 | 7 | 1 | 240 | 1 | 236 | 4.18e-43 | 147 |
| Msa1160170 | AT2G41240.2 | 40.323 | 248 | 127 | 8 | 1 | 240 | 1 | 235 | 1.16e-40 | 140 |
| Msa1160170 | AT5G04150.2 | 44.048 | 168 | 85 | 3 | 56 | 219 | 76 | 238 | 8.09e-37 | 130 |
| Msa1160170 | AT5G04150.1 | 41.667 | 180 | 96 | 3 | 56 | 231 | 76 | 250 | 1.80e-36 | 130 |
Find 36 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTCTTTATGACTAATTA+AGG | 0.218000 | 7_4:+49968734 | None:intergenic |
| AGCTTCTTAGCCATAAGTTT+AGG | 0.275147 | 7_4:+49968627 | None:intergenic |
| TCACTTCGTTCACTTCTTCC+TGG | 0.286326 | 7_4:-49968549 | Msa1160170:CDS |
| GCTTCTTAGCCATAAGTTTA+GGG | 0.291086 | 7_4:+49968628 | None:intergenic |
| AAATAATCATTTGGGCACTA+TGG | 0.310932 | 7_4:-49967103 | Msa1160170:CDS |
| TCTTCTTCTTCTAAAACCTT+TGG | 0.334379 | 7_4:-49967455 | Msa1160170:CDS |
| AAGACACGTGAAATTGTTAC+AGG | 0.334795 | 7_4:+49967746 | None:intergenic |
| GCCACAATCCCCTAAACTTA+TGG | 0.343588 | 7_4:-49968637 | Msa1160170:CDS |
| TCAATCTCAACATGTTCCTT+TGG | 0.352411 | 7_4:+49968663 | None:intergenic |
| TTGATGTGTTTAGAAAATAA+TGG | 0.374175 | 7_4:-49967494 | Msa1160170:CDS |
| AAACATGGGATGGCTCTTAG+AGG | 0.417919 | 7_4:-49968772 | Msa1160170:CDS |
| GGTGAAGAGAATTGATGATA+AGG | 0.444850 | 7_4:+49968684 | None:intergenic |
| GGGATGGCTCTTAGAGGAGT+TGG | 0.478368 | 7_4:-49968766 | Msa1160170:CDS |
| CTCAGATAGAGGAATCTTGT+AGG | 0.481665 | 7_4:+49967520 | None:intergenic |
| TCTTCTTCTAAAACCTTTGG+AGG | 0.482465 | 7_4:-49967452 | Msa1160170:CDS |
| CACATCAAGATCTCAGATAG+AGG | 0.501569 | 7_4:+49967509 | None:intergenic |
| GCCATAAGTTTAGGGGATTG+TGG | 0.507590 | 7_4:+49968636 | None:intergenic |
| CTTCTAAAACCTTTGGAGGG+AGG | 0.546758 | 7_4:-49967448 | Msa1160170:CDS |
| ACGTGTCTTAAAATACATAC+CGG | 0.551566 | 7_4:-49967732 | Msa1160170:CDS |
| TCTTCCTGGTGAAGATCAAA+CGG | 0.553586 | 7_4:-49968535 | Msa1160170:intron |
| ACAAAAGCAGAATTGTAACT+TGG | 0.558897 | 7_4:+49967602 | None:intergenic |
| CTTCTTAGCCATAAGTTTAG+GGG | 0.566289 | 7_4:+49968629 | None:intergenic |
| CTTCTTCTAAAACCTTTGGA+GGG | 0.566421 | 7_4:-49967451 | Msa1160170:CDS |
| ATAGAAGAGCCTCCCTCCAA+AGG | 0.569392 | 7_4:+49967439 | None:intergenic |
| TCATCAATTCTCTTCACCAA+AGG | 0.579398 | 7_4:-49968679 | Msa1160170:CDS |
| GAGTTCTCATACTCAAACAT+GGG | 0.591739 | 7_4:-49968786 | Msa1160170:CDS |
| TCTCATACTCAAACATGGGA+TGG | 0.596383 | 7_4:-49968782 | Msa1160170:CDS |
| TGAGTTCTCATACTCAAACA+TGG | 0.598383 | 7_4:-49968787 | Msa1160170:CDS |
| GATTTACAAAAGCAAGTGCA+AGG | 0.608962 | 7_4:-49967710 | Msa1160170:CDS |
| TTTGAGTATGAGAACTCAGG+TGG | 0.609689 | 7_4:+49968792 | None:intergenic |
| ATGTTTGAGTATGAGAACTC+AGG | 0.624831 | 7_4:+49968789 | None:intergenic |
| AGACACGTGAAATTGTTACA+GGG | 0.628066 | 7_4:+49967747 | None:intergenic |
| ATTACCGTTTGATCTTCACC+AGG | 0.645561 | 7_4:+49968531 | None:intergenic |
| CAGTTAACAAAGAATCGCAA+AGG | 0.655004 | 7_4:-49967634 | Msa1160170:CDS |
| GATCACGTTCACTAGCATTG+TGG | 0.694395 | 7_4:+49968601 | None:intergenic |
| TTGAGTATGAGAACTCAGGT+GGG | 0.707297 | 7_4:+49968793 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTTTTCAAATAGAT+TGG | + | chr7_4:49967711-49967730 | None:intergenic | 10.0% |
| !!! | ATTTTTTTTTTCAAATAGAT+TGG | + | chr7_4:49967711-49967730 | None:intergenic | 10.0% |
| !! | CATACCAAATTAAATAAAAT+TGG | + | chr7_4:49967390-49967409 | None:intergenic | 15.0% |
| !!! | CAATTTTATTTAATTTGGTA+TGG | - | chr7_4:49967388-49967407 | Msa1160170:intron | 15.0% |
| !! | CATACCAAATTAAATAAAAT+TGG | + | chr7_4:49967390-49967409 | None:intergenic | 15.0% |
| !!! | CAATTTTATTTAATTTGGTA+TGG | - | chr7_4:49967388-49967407 | Msa1160170:intron | 15.0% |
| !! | CCAAATTAAATAAAATTGGA+AGG | + | chr7_4:49967386-49967405 | None:intergenic | 20.0% |
| !!! | CCTTCCAATTTTATTTAATT+TGG | - | chr7_4:49967383-49967402 | Msa1160170:intron | 20.0% |
| !!! | AAGCTATTTTTTAAAATGAC+AGG | - | chr7_4:49967465-49967484 | Msa1160170:CDS | 20.0% |
| !!! | TAACCTACTTTAAGAAAAAA+GGG | - | chr7_4:49967874-49967893 | Msa1160170:intron | 20.0% |
| !! | TTGATGTGTTTAGAAAATAA+TGG | - | chr7_4:49968384-49968403 | Msa1160170:intron | 20.0% |
| !! | AAGCAGAAAAATAATCATTT+GGG | - | chr7_4:49968767-49968786 | Msa1160170:CDS | 20.0% |
| !! | CCAAATTAAATAAAATTGGA+AGG | + | chr7_4:49967386-49967405 | None:intergenic | 20.0% |
| !!! | CCTTCCAATTTTATTTAATT+TGG | - | chr7_4:49967383-49967402 | Msa1160170:intron | 20.0% |
| !!! | AAGCTATTTTTTAAAATGAC+AGG | - | chr7_4:49967465-49967484 | Msa1160170:CDS | 20.0% |
| !!! | TAACCTACTTTAAGAAAAAA+GGG | - | chr7_4:49967874-49967893 | Msa1160170:intron | 20.0% |
| !! | TTGATGTGTTTAGAAAATAA+TGG | - | chr7_4:49968384-49968403 | Msa1160170:intron | 20.0% |
| !! | AAGCAGAAAAATAATCATTT+GGG | - | chr7_4:49968767-49968786 | Msa1160170:CDS | 20.0% |
| ! | CTTCTCTTTATGACTAATTA+AGG | + | chr7_4:49967147-49967166 | None:intergenic | 25.0% |
| !!! | TTTAGCTTTATATAACTCCA+TGG | - | chr7_4:49967494-49967513 | Msa1160170:CDS | 25.0% |
| ! | ATGTGCAAAAAAATTAGTGA+TGG | - | chr7_4:49967781-49967800 | Msa1160170:intron | 25.0% |
| ! | ATAGCTAATCGTTCTTTAAA+AGG | - | chr7_4:49967829-49967848 | Msa1160170:intron | 25.0% |
| !! | GTAACCTACTTTAAGAAAAA+AGG | - | chr7_4:49967873-49967892 | Msa1160170:intron | 25.0% |
| ! | TGACGTATTCATAATATGAA+TGG | - | chr7_4:49968004-49968023 | Msa1160170:intron | 25.0% |
| ! | ACCCTAATTGTTTACTATTA+AGG | - | chr7_4:49968601-49968620 | Msa1160170:CDS | 25.0% |
| ! | CCCTTAATAGTAAACAATTA+GGG | + | chr7_4:49968605-49968624 | None:intergenic | 25.0% |
| ! | CCCTAATTGTTTACTATTAA+GGG | - | chr7_4:49968602-49968621 | Msa1160170:CDS | 25.0% |
| ! | TCCCTTAATAGTAAACAATT+AGG | + | chr7_4:49968606-49968625 | None:intergenic | 25.0% |
| !!! | ATTTATTTTGCAATGTTTGC+AGG | - | chr7_4:49968682-49968701 | Msa1160170:CDS | 25.0% |
| ! | GAAGCAGAAAAATAATCATT+TGG | - | chr7_4:49968766-49968785 | Msa1160170:CDS | 25.0% |
| ! | CTTCTCTTTATGACTAATTA+AGG | + | chr7_4:49967147-49967166 | None:intergenic | 25.0% |
| !!! | TTTAGCTTTATATAACTCCA+TGG | - | chr7_4:49967494-49967513 | Msa1160170:CDS | 25.0% |
| ! | ATGTGCAAAAAAATTAGTGA+TGG | - | chr7_4:49967781-49967800 | Msa1160170:intron | 25.0% |
| ! | ATAGCTAATCGTTCTTTAAA+AGG | - | chr7_4:49967829-49967848 | Msa1160170:intron | 25.0% |
| !! | GTAACCTACTTTAAGAAAAA+AGG | - | chr7_4:49967873-49967892 | Msa1160170:intron | 25.0% |
| ! | TGACGTATTCATAATATGAA+TGG | - | chr7_4:49968004-49968023 | Msa1160170:intron | 25.0% |
| ! | ACCCTAATTGTTTACTATTA+AGG | - | chr7_4:49968601-49968620 | Msa1160170:CDS | 25.0% |
| ! | CCCTTAATAGTAAACAATTA+GGG | + | chr7_4:49968605-49968624 | None:intergenic | 25.0% |
| ! | CCCTAATTGTTTACTATTAA+GGG | - | chr7_4:49968602-49968621 | Msa1160170:CDS | 25.0% |
| ! | TCCCTTAATAGTAAACAATT+AGG | + | chr7_4:49968606-49968625 | None:intergenic | 25.0% |
| !!! | ATTTATTTTGCAATGTTTGC+AGG | - | chr7_4:49968682-49968701 | Msa1160170:CDS | 25.0% |
| ! | GAAGCAGAAAAATAATCATT+TGG | - | chr7_4:49968766-49968785 | Msa1160170:CDS | 25.0% |
| CTAGAGATAAGCATAATCAT+AGG | + | chr7_4:49967545-49967564 | None:intergenic | 30.0% | |
| CTATGATTATGCTTATCTCT+AGG | - | chr7_4:49967543-49967562 | Msa1160170:CDS | 30.0% | |
| !! | AAGAGTTTTGATGTGACTAT+TGG | - | chr7_4:49967594-49967613 | Msa1160170:CDS | 30.0% |
| CCAATAATTGATTAATCCAG+AGG | + | chr7_4:49967650-49967669 | None:intergenic | 30.0% | |
| CCTCTGGATTAATCAATTAT+TGG | - | chr7_4:49967647-49967666 | Msa1160170:CDS | 30.0% | |
| !!! | ACACCCTTTTTTCTTAAAGT+AGG | + | chr7_4:49967880-49967899 | None:intergenic | 30.0% |
| ! | CTGTTTGTTTCGTAATGTTT+TGG | - | chr7_4:49967928-49967947 | Msa1160170:intron | 30.0% |
| !!! | TTTTTTCTGCAACATCAACA+TGG | + | chr7_4:49968103-49968122 | None:intergenic | 30.0% |
| ACGTGTCTTAAAATACATAC+CGG | - | chr7_4:49968146-49968165 | Msa1160170:intron | 30.0% | |
| ACAAAAGCAGAATTGTAACT+TGG | + | chr7_4:49968279-49968298 | None:intergenic | 30.0% | |
| !! | TCTTCTTCTTCTAAAACCTT+TGG | - | chr7_4:49968423-49968442 | Msa1160170:intron | 30.0% |
| !! | CTTCTATAACTTGCATTTTC+AGG | - | chr7_4:49968455-49968474 | Msa1160170:intron | 30.0% |
| AAATAATCATTTGGGCACTA+TGG | - | chr7_4:49968775-49968794 | Msa1160170:CDS | 30.0% | |
| CTAGAGATAAGCATAATCAT+AGG | + | chr7_4:49967545-49967564 | None:intergenic | 30.0% | |
| CTATGATTATGCTTATCTCT+AGG | - | chr7_4:49967543-49967562 | Msa1160170:CDS | 30.0% | |
| !! | AAGAGTTTTGATGTGACTAT+TGG | - | chr7_4:49967594-49967613 | Msa1160170:CDS | 30.0% |
| CCAATAATTGATTAATCCAG+AGG | + | chr7_4:49967650-49967669 | None:intergenic | 30.0% | |
| CCTCTGGATTAATCAATTAT+TGG | - | chr7_4:49967647-49967666 | Msa1160170:CDS | 30.0% | |
| !!! | ACACCCTTTTTTCTTAAAGT+AGG | + | chr7_4:49967880-49967899 | None:intergenic | 30.0% |
| ! | CTGTTTGTTTCGTAATGTTT+TGG | - | chr7_4:49967928-49967947 | Msa1160170:intron | 30.0% |
| !!! | TTTTTTCTGCAACATCAACA+TGG | + | chr7_4:49968103-49968122 | None:intergenic | 30.0% |
| ACGTGTCTTAAAATACATAC+CGG | - | chr7_4:49968146-49968165 | Msa1160170:intron | 30.0% | |
| ACAAAAGCAGAATTGTAACT+TGG | + | chr7_4:49968279-49968298 | None:intergenic | 30.0% | |
| !! | TCTTCTTCTTCTAAAACCTT+TGG | - | chr7_4:49968423-49968442 | Msa1160170:intron | 30.0% |
| !! | CTTCTATAACTTGCATTTTC+AGG | - | chr7_4:49968455-49968474 | Msa1160170:intron | 30.0% |
| AAATAATCATTTGGGCACTA+TGG | - | chr7_4:49968775-49968794 | Msa1160170:CDS | 30.0% | |
| ATGTTTGAGTATGAGAACTC+AGG | + | chr7_4:49967092-49967111 | None:intergenic | 35.0% | |
| TGAGTTCTCATACTCAAACA+TGG | - | chr7_4:49967091-49967110 | Msa1160170:CDS | 35.0% | |
| GAGTTCTCATACTCAAACAT+GGG | - | chr7_4:49967092-49967111 | Msa1160170:CDS | 35.0% | |
| ! | GGTGAAGAGAATTGATGATA+AGG | + | chr7_4:49967197-49967216 | None:intergenic | 35.0% |
| TCATCAATTCTCTTCACCAA+AGG | - | chr7_4:49967199-49967218 | Msa1160170:intron | 35.0% | |
| TCAATCTCAACATGTTCCTT+TGG | + | chr7_4:49967218-49967237 | None:intergenic | 35.0% | |
| CTTCTTAGCCATAAGTTTAG+GGG | + | chr7_4:49967252-49967271 | None:intergenic | 35.0% | |
| GCTTCTTAGCCATAAGTTTA+GGG | + | chr7_4:49967253-49967272 | None:intergenic | 35.0% | |
| AGCTTCTTAGCCATAAGTTT+AGG | + | chr7_4:49967254-49967273 | None:intergenic | 35.0% | |
| GCTTTATATAACTCCATGGT+TGG | - | chr7_4:49967498-49967517 | Msa1160170:CDS | 35.0% | |
| ! | TAGGTCTGATGATGAAAGTT+TGG | - | chr7_4:49967562-49967581 | Msa1160170:CDS | 35.0% |
| AGACACGTGAAATTGTTACA+GGG | + | chr7_4:49968134-49968153 | None:intergenic | 35.0% | |
| AAGACACGTGAAATTGTTAC+AGG | + | chr7_4:49968135-49968154 | None:intergenic | 35.0% | |
| !! | TGCACTTGCTTTTGTAAATC+CGG | + | chr7_4:49968168-49968187 | None:intergenic | 35.0% |
| GATTTACAAAAGCAAGTGCA+AGG | - | chr7_4:49968168-49968187 | Msa1160170:intron | 35.0% | |
| CAGTTAACAAAGAATCGCAA+AGG | - | chr7_4:49968244-49968263 | Msa1160170:intron | 35.0% | |
| ! | CTTTTGTAGTTTCGACAAGT+AGG | - | chr7_4:49968292-49968311 | Msa1160170:intron | 35.0% |
| !! | TCTTCTTCTAAAACCTTTGG+AGG | - | chr7_4:49968426-49968445 | Msa1160170:intron | 35.0% |
| !! | CTTCTTCTAAAACCTTTGGA+GGG | - | chr7_4:49968427-49968446 | Msa1160170:intron | 35.0% |
| ! | TATTTTGCAATGTTTGCAGG+TGG | - | chr7_4:49968685-49968704 | Msa1160170:CDS | 35.0% |
| ATGTTTGAGTATGAGAACTC+AGG | + | chr7_4:49967092-49967111 | None:intergenic | 35.0% | |
| TGAGTTCTCATACTCAAACA+TGG | - | chr7_4:49967091-49967110 | Msa1160170:CDS | 35.0% | |
| GAGTTCTCATACTCAAACAT+GGG | - | chr7_4:49967092-49967111 | Msa1160170:CDS | 35.0% | |
| ! | GGTGAAGAGAATTGATGATA+AGG | + | chr7_4:49967197-49967216 | None:intergenic | 35.0% |
| TCATCAATTCTCTTCACCAA+AGG | - | chr7_4:49967199-49967218 | Msa1160170:intron | 35.0% | |
| TCAATCTCAACATGTTCCTT+TGG | + | chr7_4:49967218-49967237 | None:intergenic | 35.0% | |
| CTTCTTAGCCATAAGTTTAG+GGG | + | chr7_4:49967252-49967271 | None:intergenic | 35.0% | |
| GCTTCTTAGCCATAAGTTTA+GGG | + | chr7_4:49967253-49967272 | None:intergenic | 35.0% | |
| AGCTTCTTAGCCATAAGTTT+AGG | + | chr7_4:49967254-49967273 | None:intergenic | 35.0% | |
| GCTTTATATAACTCCATGGT+TGG | - | chr7_4:49967498-49967517 | Msa1160170:CDS | 35.0% | |
| ! | TAGGTCTGATGATGAAAGTT+TGG | - | chr7_4:49967562-49967581 | Msa1160170:CDS | 35.0% |
| AGACACGTGAAATTGTTACA+GGG | + | chr7_4:49968134-49968153 | None:intergenic | 35.0% | |
| AAGACACGTGAAATTGTTAC+AGG | + | chr7_4:49968135-49968154 | None:intergenic | 35.0% | |
| !! | TGCACTTGCTTTTGTAAATC+CGG | + | chr7_4:49968168-49968187 | None:intergenic | 35.0% |
| GATTTACAAAAGCAAGTGCA+AGG | - | chr7_4:49968168-49968187 | Msa1160170:intron | 35.0% | |
| CAGTTAACAAAGAATCGCAA+AGG | - | chr7_4:49968244-49968263 | Msa1160170:intron | 35.0% | |
| ! | CTTTTGTAGTTTCGACAAGT+AGG | - | chr7_4:49968292-49968311 | Msa1160170:intron | 35.0% |
| !! | TCTTCTTCTAAAACCTTTGG+AGG | - | chr7_4:49968426-49968445 | Msa1160170:intron | 35.0% |
| !! | CTTCTTCTAAAACCTTTGGA+GGG | - | chr7_4:49968427-49968446 | Msa1160170:intron | 35.0% |
| ! | TATTTTGCAATGTTTGCAGG+TGG | - | chr7_4:49968685-49968704 | Msa1160170:CDS | 35.0% |
| TTGAGTATGAGAACTCAGGT+GGG | + | chr7_4:49967088-49967107 | None:intergenic | 40.0% | |
| TTTGAGTATGAGAACTCAGG+TGG | + | chr7_4:49967089-49967108 | None:intergenic | 40.0% | |
| TCTCATACTCAAACATGGGA+TGG | - | chr7_4:49967096-49967115 | Msa1160170:CDS | 40.0% | |
| TCTTCCTGGTGAAGATCAAA+CGG | - | chr7_4:49967343-49967362 | Msa1160170:intron | 40.0% | |
| ATTACCGTTTGATCTTCACC+AGG | + | chr7_4:49967350-49967369 | None:intergenic | 40.0% | |
| TTTCATCATCAGACCAACCA+TGG | + | chr7_4:49967514-49967533 | None:intergenic | 40.0% | |
| CTCAGATAGAGGAATCTTGT+AGG | + | chr7_4:49968361-49968380 | None:intergenic | 40.0% | |
| CACATCAAGATCTCAGATAG+AGG | + | chr7_4:49968372-49968391 | None:intergenic | 40.0% | |
| TTGAGTATGAGAACTCAGGT+GGG | + | chr7_4:49967088-49967107 | None:intergenic | 40.0% | |
| TTTGAGTATGAGAACTCAGG+TGG | + | chr7_4:49967089-49967108 | None:intergenic | 40.0% | |
| TCTCATACTCAAACATGGGA+TGG | - | chr7_4:49967096-49967115 | Msa1160170:CDS | 40.0% | |
| TCTTCCTGGTGAAGATCAAA+CGG | - | chr7_4:49967343-49967362 | Msa1160170:intron | 40.0% | |
| ATTACCGTTTGATCTTCACC+AGG | + | chr7_4:49967350-49967369 | None:intergenic | 40.0% | |
| TTTCATCATCAGACCAACCA+TGG | + | chr7_4:49967514-49967533 | None:intergenic | 40.0% | |
| CTCAGATAGAGGAATCTTGT+AGG | + | chr7_4:49968361-49968380 | None:intergenic | 40.0% | |
| CACATCAAGATCTCAGATAG+AGG | + | chr7_4:49968372-49968391 | None:intergenic | 40.0% | |
| AAACATGGGATGGCTCTTAG+AGG | - | chr7_4:49967106-49967125 | Msa1160170:CDS | 45.0% | |
| GCCACAATCCCCTAAACTTA+TGG | - | chr7_4:49967241-49967260 | Msa1160170:intron | 45.0% | |
| GCCATAAGTTTAGGGGATTG+TGG | + | chr7_4:49967245-49967264 | None:intergenic | 45.0% | |
| GATCACGTTCACTAGCATTG+TGG | + | chr7_4:49967280-49967299 | None:intergenic | 45.0% | |
| TCACTTCGTTCACTTCTTCC+TGG | - | chr7_4:49967329-49967348 | Msa1160170:intron | 45.0% | |
| !! | CTTCTAAAACCTTTGGAGGG+AGG | - | chr7_4:49968430-49968449 | Msa1160170:intron | 45.0% |
| AAACATGGGATGGCTCTTAG+AGG | - | chr7_4:49967106-49967125 | Msa1160170:CDS | 45.0% | |
| GCCACAATCCCCTAAACTTA+TGG | - | chr7_4:49967241-49967260 | Msa1160170:intron | 45.0% | |
| GCCATAAGTTTAGGGGATTG+TGG | + | chr7_4:49967245-49967264 | None:intergenic | 45.0% | |
| GATCACGTTCACTAGCATTG+TGG | + | chr7_4:49967280-49967299 | None:intergenic | 45.0% | |
| TCACTTCGTTCACTTCTTCC+TGG | - | chr7_4:49967329-49967348 | Msa1160170:intron | 45.0% | |
| !! | CTTCTAAAACCTTTGGAGGG+AGG | - | chr7_4:49968430-49968449 | Msa1160170:intron | 45.0% |
| !! | GAATAAAATATATATATTAA+TGG | + | chr7_4:49968081-49968100 | None:intergenic | 5.0% |
| !! | GAATAAAATATATATATTAA+TGG | + | chr7_4:49968081-49968100 | None:intergenic | 5.0% |
| ATAGAAGAGCCTCCCTCCAA+AGG | + | chr7_4:49968442-49968461 | None:intergenic | 50.0% | |
| ATAGAAGAGCCTCCCTCCAA+AGG | + | chr7_4:49968442-49968461 | None:intergenic | 50.0% | |
| GGGATGGCTCTTAGAGGAGT+TGG | - | chr7_4:49967112-49967131 | Msa1160170:CDS | 55.0% | |
| CTATTGGACCCTCGCTAGAG+TGG | - | chr7_4:49967610-49967629 | Msa1160170:CDS | 55.0% | |
| GGGATGGCTCTTAGAGGAGT+TGG | - | chr7_4:49967112-49967131 | Msa1160170:CDS | 55.0% | |
| CTATTGGACCCTCGCTAGAG+TGG | - | chr7_4:49967610-49967629 | Msa1160170:CDS | 55.0% | |
| TGGACCCTCGCTAGAGTGGA+TGG | - | chr7_4:49967614-49967633 | Msa1160170:CDS | 60.0% | |
| ACCCTCGCTAGAGTGGATGG+TGG | - | chr7_4:49967617-49967636 | Msa1160170:CDS | 60.0% | |
| CCCACCATCCACTCTAGCGA+GGG | + | chr7_4:49967621-49967640 | None:intergenic | 60.0% | |
| CCCTCGCTAGAGTGGATGGT+GGG | - | chr7_4:49967618-49967637 | Msa1160170:CDS | 60.0% | |
| CCTCGCTAGAGTGGATGGTG+GGG | - | chr7_4:49967619-49967638 | Msa1160170:CDS | 60.0% | |
| !! | GCTAGAGTGGATGGTGGGGT+CGG | - | chr7_4:49967623-49967642 | Msa1160170:CDS | 60.0% |
| TGGACCCTCGCTAGAGTGGA+TGG | - | chr7_4:49967614-49967633 | Msa1160170:CDS | 60.0% | |
| ACCCTCGCTAGAGTGGATGG+TGG | - | chr7_4:49967617-49967636 | Msa1160170:CDS | 60.0% | |
| CCCACCATCCACTCTAGCGA+GGG | + | chr7_4:49967621-49967640 | None:intergenic | 60.0% | |
| CCCTCGCTAGAGTGGATGGT+GGG | - | chr7_4:49967618-49967637 | Msa1160170:CDS | 60.0% | |
| CCTCGCTAGAGTGGATGGTG+GGG | - | chr7_4:49967619-49967638 | Msa1160170:CDS | 60.0% | |
| !! | GCTAGAGTGGATGGTGGGGT+CGG | - | chr7_4:49967623-49967642 | Msa1160170:CDS | 60.0% |
| CCCCACCATCCACTCTAGCG+AGG | + | chr7_4:49967622-49967641 | None:intergenic | 65.0% | |
| CCCCACCATCCACTCTAGCG+AGG | + | chr7_4:49967622-49967641 | None:intergenic | 65.0% | |
| !! | GGATGGTGGGGTCGGTCCTC+TGG | - | chr7_4:49967631-49967650 | Msa1160170:CDS | 70.0% |
| !! | GGATGGTGGGGTCGGTCCTC+TGG | - | chr7_4:49967631-49967650 | Msa1160170:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 49967071 | 49968829 | 49967071 | ID=Msa1160170;Name=Msa1160170 |
| chr7_4 | mRNA | 49967071 | 49968829 | 49967071 | ID=Msa1160170-mRNA-1;Parent=Msa1160170;Name=Msa1160170-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|3|0|259 |
| chr7_4 | exon | 49968536 | 49968829 | 49968536 | ID=Msa1160170-mRNA-1:exon:13842;Parent=Msa1160170-mRNA-1 |
| chr7_4 | exon | 49967424 | 49967783 | 49967424 | ID=Msa1160170-mRNA-1:exon:13841;Parent=Msa1160170-mRNA-1 |
| chr7_4 | exon | 49967071 | 49967196 | 49967071 | ID=Msa1160170-mRNA-1:exon:13840;Parent=Msa1160170-mRNA-1 |
| chr7_4 | CDS | 49968536 | 49968829 | 49968536 | ID=Msa1160170-mRNA-1:cds;Parent=Msa1160170-mRNA-1 |
| chr7_4 | CDS | 49967424 | 49967783 | 49967424 | ID=Msa1160170-mRNA-1:cds;Parent=Msa1160170-mRNA-1 |
| chr7_4 | CDS | 49967071 | 49967196 | 49967071 | ID=Msa1160170-mRNA-1:cds;Parent=Msa1160170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
