AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1033980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1033980 MtrunA17_Chr7g0256941 98.256 172 3 0 1 172 1 172 3.25e-121 352
Msa1033980 MtrunA17_Chr3g0085851 61.745 149 54 3 25 172 37 183 7.34e-58 189
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1033980 AT3G57200.2 72.603 146 36 2 29 172 39 182 4.38e-70 219
Msa1033980 AT2G41451.1 65.644 163 53 1 10 172 4 163 1.67e-69 218
Msa1033980 AT3G57200.1 72.603 146 36 2 29 172 39 182 2.00e-69 219
Msa1033980 AT3G08550.1 58.382 173 58 5 12 172 26 196 4.77e-54 179

Find 74 sgRNAs with CRISPR-Local

Find 261 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAAATGAAAATTGAAATT+TGG 0.269674 7_1:+69371347 None:intergenic
GAGACGGGAGGTGGAGGAAG+TGG 0.280549 7_1:+69371220 None:intergenic
ACGGGAGGTGGAGGAAGTGG+TGG 0.311893 7_1:+69371223 None:intergenic
AAGGAGGAGACGGGAGGTGG+AGG 0.322254 7_1:+69371214 None:intergenic
TACGAGTACTTCTGCGGGTT+TGG 0.336044 7_1:-69370528 Msa1033980:CDS
ATTTATTATCATAAAGTTAT+GGG 0.341971 7_1:-69370488 Msa1033980:CDS
GGAGGTGGAGGAAGTGGTGG+GGG 0.349082 7_1:+69371226 None:intergenic
GATTTATTATCATAAAGTTA+TGG 0.369531 7_1:-69370489 Msa1033980:CDS
TAGAGGAGCAACAAGCTAAA+AGG 0.370171 7_1:-69370255 Msa1033980:intron
GCGAAGGCGGCGAGGGTGAG+AGG 0.377621 7_1:+69371176 None:intergenic
GAGAAGGAGGAGACGGGAGG+TGG 0.380685 7_1:+69371211 None:intergenic
CGGTGACGCCGCCGCGCCAT+TGG 0.380983 7_1:+69371144 None:intergenic
ATATAGAACAAGAGAATTAG+AGG 0.382244 7_1:-69370272 Msa1033980:CDS
GGTTAAGAGAAGGAGGAGAC+GGG 0.410311 7_1:+69371205 None:intergenic
TCCGATTGCTCTAGTCTCTT+CGG 0.424302 7_1:-69371029 Msa1033980:CDS
CCTTCGCTTTCCTCCTCCAA+TGG 0.426815 7_1:-69371160 Msa1033980:CDS
GTGATCGGAGGTTGACATAC+CGG 0.436673 7_1:+69371082 None:intergenic
GAGGTGGAGGAAGTGGTGGG+GGG 0.446982 7_1:+69371227 None:intergenic
GGGAGGTGGAGGAAGTGGTG+GGG 0.449526 7_1:+69371225 None:intergenic
TCGGGTGACCAACGGGTGAC+AGG 0.451763 7_1:+69371119 None:intergenic
TCTAAAACTCTAGATACATT+AGG 0.459550 7_1:+69370422 None:intergenic
GAGGAAAGCGAAGGCGGCGA+GGG 0.465773 7_1:+69371169 None:intergenic
CGAAGGCGGCGAGGGTGAGA+GGG 0.466415 7_1:+69371177 None:intergenic
CGGGAGGTGGAGGAAGTGGT+GGG 0.468325 7_1:+69371224 None:intergenic
CTCCTCCGATCTCTCCCCTA+AGG 0.470152 7_1:-69370955 Msa1033980:intron
GAGAAGAATGATGGTGTTGT+TGG 0.470209 7_1:+69371309 None:intergenic
TGGTTAAGAGAAGGAGGAGA+CGG 0.470221 7_1:+69371204 None:intergenic
TGACGCCGCCGCGCCATTGG+AGG 0.476051 7_1:+69371147 None:intergenic
AGAGTCCAATCACGAAAGTA+AGG 0.479757 7_1:+69370984 None:intergenic
TCACGAAAGTAAGGAAAAGA+AGG 0.492215 7_1:+69370993 None:intergenic
GGAGGATGGTTAAGAGAAGG+AGG 0.492785 7_1:+69371198 None:intergenic
TGATCGGAGGTTGACATACC+GGG 0.495608 7_1:+69371083 None:intergenic
GCCGAAGAGACTAGAGCAAT+CGG 0.503849 7_1:+69371028 None:intergenic
TGCACCTCCCACACAATGGC+AGG 0.517788 7_1:-69371263 Msa1033980:exon
ATCGTGTTGATGAGGGAAGA+AGG 0.520326 7_1:+69371373 None:intergenic
TGGGAGGTGCAATTAGAAGA+AGG 0.523054 7_1:+69371275 None:intergenic
GTTTGCACCTGCCATTGTGT+GGG 0.526481 7_1:+69371256 None:intergenic
AGGTTGACATACCGGGGAAG+AGG 0.528361 7_1:+69371090 None:intergenic
GAGGGAGGATGGTTAAGAGA+AGG 0.530034 7_1:+69371195 None:intergenic
ATCAATTCAACTCACCGGAA+TGG 0.535037 7_1:+69370397 None:intergenic
GTGAATTTGGAGAAGAATGA+TGG 0.535335 7_1:+69371300 None:intergenic
GGCGAGGGTGAGAGGGAGGA+TGG 0.540258 7_1:+69371184 None:intergenic
TGATCGTTGTTGAATGTGAT+CGG 0.542485 7_1:+69371067 None:intergenic
GGGAGGTGCAATTAGAAGAA+GGG 0.543380 7_1:+69371276 None:intergenic
ACAAACCTTAGGGGAGAGAT+CGG 0.545968 7_1:+69370950 None:intergenic
GGAGGTGCAATTAGAAGAAG+GGG 0.552975 7_1:+69371277 None:intergenic
TGTTTGCACCTGCCATTGTG+TGG 0.557756 7_1:+69371255 None:intergenic
CGGGTGACCAACGGGTGACA+GGG 0.559140 7_1:+69371120 None:intergenic
AGGCGGCGAGGGTGAGAGGG+AGG 0.559850 7_1:+69371180 None:intergenic
CACGAAAGTAAGGAAAAGAA+GGG 0.561897 7_1:+69370994 None:intergenic
TAAGAGAAGGAGGAGACGGG+AGG 0.562423 7_1:+69371208 None:intergenic
CCCGATCAAAACCTCTTCCC+CGG 0.563891 7_1:-69371101 Msa1033980:CDS
TATAACTACGAGTACTTCTG+CGG 0.579392 7_1:-69370534 Msa1033980:CDS
TTAGAACAGATCATTGGCAG+AGG 0.580270 7_1:-69369933 Msa1033980:intron
TTGGTGTATCGTGTTGATGA+GGG 0.581833 7_1:+69371366 None:intergenic
TTTGGTGTATCGTGTTGATG+AGG 0.591136 7_1:+69371365 None:intergenic
GGAGGAAAGCGAAGGCGGCG+AGG 0.593192 7_1:+69371168 None:intergenic
TGACCAACGGGTGACAGGGT+CGG 0.600710 7_1:+69371124 None:intergenic
ACTTTATGATAATAAATCCA+TGG 0.608104 7_1:+69370494 None:intergenic
TTGGAGGAGGAAAGCGAAGG+CGG 0.614337 7_1:+69371163 None:intergenic
TCACCGACCCTGTCACCCGT+TGG 0.628884 7_1:-69371127 Msa1033980:CDS
ATAACTACGAGTACTTCTGC+GGG 0.630167 7_1:-69370533 Msa1033980:CDS
AACCTTAGGGGAGAGATCGG+AGG 0.649517 7_1:+69370953 None:intergenic
GCTTTCCTCCTCCAATGGCG+CGG 0.658623 7_1:-69371155 Msa1033980:CDS
GTTTGGAGCAGACACTACCA+TGG 0.661527 7_1:-69370511 Msa1033980:CDS
TAATTGCACCTCCCACACAA+TGG 0.673561 7_1:-69371267 Msa1033980:exon
GACAATGATACAAACCTTAG+GGG 0.674094 7_1:+69370941 None:intergenic
ACGAAAGTAAGGAAAAGAAG+GGG 0.676120 7_1:+69370995 None:intergenic
TTCCTCCTCCAATGGCGCGG+CGG 0.677063 7_1:-69371152 Msa1033980:CDS
CCATTGGAGGAGGAAAGCGA+AGG 0.686331 7_1:+69371160 None:intergenic
TCGTTGTTGAATGTGATCGG+AGG 0.692013 7_1:+69371070 None:intergenic
GAGCAATCGGAATGTGAACG+AGG 0.693438 7_1:+69371041 None:intergenic
GATCGGAGGTTGACATACCG+GGG 0.720508 7_1:+69371084 None:intergenic
GAGGTGCAATTAGAAGAAGG+GGG 0.740760 7_1:+69371278 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTATTATCATAAAGTTAT+GGG - chr7_1:69370881-69370900 Msa1033980:intron 10.0%
!! ATTTATTATCATAAAGTTAT+GGG - chr7_1:69370881-69370900 Msa1033980:intron 10.0%
!! ATGAAATGAAAATTGAAATT+TGG + chr7_1:69370025-69370044 None:intergenic 15.0%
!! GATTTATTATCATAAAGTTA+TGG - chr7_1:69370880-69370899 Msa1033980:intron 15.0%
!!! TAAAATGATGATTTTTTGTT+AGG - chr7_1:69371061-69371080 Msa1033980:CDS 15.0%
!!! AAAATGATGATTTTTTGTTA+GGG - chr7_1:69371062-69371081 Msa1033980:CDS 15.0%
!! ATGAAATGAAAATTGAAATT+TGG + chr7_1:69370025-69370044 None:intergenic 15.0%
!! GATTTATTATCATAAAGTTA+TGG - chr7_1:69370880-69370899 Msa1033980:intron 15.0%
!!! TAAAATGATGATTTTTTGTT+AGG - chr7_1:69371061-69371080 Msa1033980:CDS 15.0%
!!! AAAATGATGATTTTTTGTTA+GGG - chr7_1:69371062-69371081 Msa1033980:CDS 15.0%
!! TCAAAAATTGAATCTGATAA+GGG + chr7_1:69370502-69370521 None:intergenic 20.0%
!! ATCAAAAATTGAATCTGATA+AGG + chr7_1:69370503-69370522 None:intergenic 20.0%
!! AAATATAAAACAAAGACGAT+TGG + chr7_1:69370548-69370567 None:intergenic 20.0%
!! TTTAATTCAATTCATCATCT+TGG - chr7_1:69370565-69370584 Msa1033980:intron 20.0%
!! CAGAATGAATTGAAATAAAT+GGG - chr7_1:69370709-69370728 Msa1033980:intron 20.0%
!! AGAATGAATTGAAATAAATG+GGG - chr7_1:69370710-69370729 Msa1033980:intron 20.0%
!!! TTTTCTAATGATTTGTCTTT+AGG - chr7_1:69370735-69370754 Msa1033980:intron 20.0%
!! ACTTTATGATAATAAATCCA+TGG + chr7_1:69370878-69370897 None:intergenic 20.0%
!!! AGTTTTTTACTTTTTGTTGA+AGG - chr7_1:69370911-69370930 Msa1033980:intron 20.0%
!!! GTTTTTTACTTTTTGTTGAA+GGG - chr7_1:69370912-69370931 Msa1033980:intron 20.0%
!! TTAATCAAAGTTCAAAACTT+GGG + chr7_1:69371044-69371063 None:intergenic 20.0%
!! TTTAATCAAAGTTCAAAACT+TGG + chr7_1:69371045-69371064 None:intergenic 20.0%
!!! AAATGATGATTTTTTGTTAG+GGG - chr7_1:69371063-69371082 Msa1033980:CDS 20.0%
!! TCAAAAATTGAATCTGATAA+GGG + chr7_1:69370502-69370521 None:intergenic 20.0%
!! ATCAAAAATTGAATCTGATA+AGG + chr7_1:69370503-69370522 None:intergenic 20.0%
!! AAATATAAAACAAAGACGAT+TGG + chr7_1:69370548-69370567 None:intergenic 20.0%
!! TTTAATTCAATTCATCATCT+TGG - chr7_1:69370565-69370584 Msa1033980:intron 20.0%
!! CAGAATGAATTGAAATAAAT+GGG - chr7_1:69370709-69370728 Msa1033980:intron 20.0%
!! AGAATGAATTGAAATAAATG+GGG - chr7_1:69370710-69370729 Msa1033980:intron 20.0%
!!! TTTTCTAATGATTTGTCTTT+AGG - chr7_1:69370735-69370754 Msa1033980:intron 20.0%
!! ACTTTATGATAATAAATCCA+TGG + chr7_1:69370878-69370897 None:intergenic 20.0%
!!! AGTTTTTTACTTTTTGTTGA+AGG - chr7_1:69370911-69370930 Msa1033980:intron 20.0%
!!! GTTTTTTACTTTTTGTTGAA+GGG - chr7_1:69370912-69370931 Msa1033980:intron 20.0%
!! TTAATCAAAGTTCAAAACTT+GGG + chr7_1:69371044-69371063 None:intergenic 20.0%
!! TTTAATCAAAGTTCAAAACT+TGG + chr7_1:69371045-69371064 None:intergenic 20.0%
!!! AAATGATGATTTTTTGTTAG+GGG - chr7_1:69371063-69371082 Msa1033980:CDS 20.0%
! ATTCATTCTGCAATAATTCT+TGG + chr7_1:69370699-69370718 None:intergenic 25.0%
! GCAGAATGAATTGAAATAAA+TGG - chr7_1:69370708-69370727 Msa1033980:intron 25.0%
! AAAACAATATCAAATCAACC+AGG + chr7_1:69370797-69370816 None:intergenic 25.0%
!! TCTAAAACTCTAGATACATT+AGG + chr7_1:69370950-69370969 None:intergenic 25.0%
!!! GAATTGATTTTGATGTGAAA+TGG - chr7_1:69370987-69371006 Msa1033980:CDS 25.0%
!!! AATGATGATTTTTTGTTAGG+GGG - chr7_1:69371064-69371083 Msa1033980:CDS 25.0%
! ATATAGAACAAGAGAATTAG+AGG - chr7_1:69371097-69371116 Msa1033980:CDS 25.0%
!! AATGCATGTTGATTAACTAA+AGG + chr7_1:69371239-69371258 None:intergenic 25.0%
! CTAAAACAAAAAACAAGACA+TGG + chr7_1:69371420-69371439 None:intergenic 25.0%
!!! TTTGTTTTAGAACAGATCAT+TGG - chr7_1:69371430-69371449 Msa1033980:five_prime_UTR 25.0%
! ATTCATTCTGCAATAATTCT+TGG + chr7_1:69370699-69370718 None:intergenic 25.0%
! GCAGAATGAATTGAAATAAA+TGG - chr7_1:69370708-69370727 Msa1033980:intron 25.0%
! AAAACAATATCAAATCAACC+AGG + chr7_1:69370797-69370816 None:intergenic 25.0%
!! TCTAAAACTCTAGATACATT+AGG + chr7_1:69370950-69370969 None:intergenic 25.0%
!!! GAATTGATTTTGATGTGAAA+TGG - chr7_1:69370987-69371006 Msa1033980:CDS 25.0%
!!! AATGATGATTTTTTGTTAGG+GGG - chr7_1:69371064-69371083 Msa1033980:CDS 25.0%
! ATATAGAACAAGAGAATTAG+AGG - chr7_1:69371097-69371116 Msa1033980:CDS 25.0%
!! AATGCATGTTGATTAACTAA+AGG + chr7_1:69371239-69371258 None:intergenic 25.0%
! CTAAAACAAAAAACAAGACA+TGG + chr7_1:69371420-69371439 None:intergenic 25.0%
!!! TTTGTTTTAGAACAGATCAT+TGG - chr7_1:69371430-69371449 Msa1033980:five_prime_UTR 25.0%
AAAAACAACTGCTCAATCAA+TGG + chr7_1:69369929-69369948 None:intergenic 30.0%
ATTATCCTTGGATCTATCTT+TGG - chr7_1:69370460-69370479 Msa1033980:CDS 30.0%
AAAAACCAAAGATAGATCCA+AGG + chr7_1:69370468-69370487 None:intergenic 30.0%
ATTCAAATTCATAACGAGAC+AGG + chr7_1:69370611-69370630 None:intergenic 30.0%
! TCTAATGATTTGTCTTTAGG+TGG - chr7_1:69370738-69370757 Msa1033980:intron 30.0%
TATCAAATCAACCAGGTAAT+CGG + chr7_1:69370790-69370809 None:intergenic 30.0%
!!! TAGAGTTTTAGAAACCATTC+CGG - chr7_1:69370958-69370977 Msa1033980:CDS 30.0%
TCAAAATCAATTCAACTCAC+CGG + chr7_1:69370980-69370999 None:intergenic 30.0%
!!! CAGGTGACTGTTTTTTATAT+TGG - chr7_1:69371205-69371224 Msa1033980:CDS 30.0%
! ATGTTGATTAACTAAAGGCA+CGG + chr7_1:69371234-69371253 None:intergenic 30.0%
TAGTTAATCAACATGCATTC+TGG - chr7_1:69371240-69371259 Msa1033980:CDS 30.0%
AAAAAACAAGACATGGTCTT+TGG + chr7_1:69371413-69371432 None:intergenic 30.0%
AAAAACAACTGCTCAATCAA+TGG + chr7_1:69369929-69369948 None:intergenic 30.0%
ATTATCCTTGGATCTATCTT+TGG - chr7_1:69370460-69370479 Msa1033980:CDS 30.0%
AAAAACCAAAGATAGATCCA+AGG + chr7_1:69370468-69370487 None:intergenic 30.0%
ATTCAAATTCATAACGAGAC+AGG + chr7_1:69370611-69370630 None:intergenic 30.0%
! TCTAATGATTTGTCTTTAGG+TGG - chr7_1:69370738-69370757 Msa1033980:intron 30.0%
TATCAAATCAACCAGGTAAT+CGG + chr7_1:69370790-69370809 None:intergenic 30.0%
!!! TAGAGTTTTAGAAACCATTC+CGG - chr7_1:69370958-69370977 Msa1033980:CDS 30.0%
TCAAAATCAATTCAACTCAC+CGG + chr7_1:69370980-69370999 None:intergenic 30.0%
!!! CAGGTGACTGTTTTTTATAT+TGG - chr7_1:69371205-69371224 Msa1033980:CDS 30.0%
! ATGTTGATTAACTAAAGGCA+CGG + chr7_1:69371234-69371253 None:intergenic 30.0%
TAGTTAATCAACATGCATTC+TGG - chr7_1:69371240-69371259 Msa1033980:CDS 30.0%
AAAAAACAAGACATGGTCTT+TGG + chr7_1:69371413-69371432 None:intergenic 30.0%
GTGAATTTGGAGAAGAATGA+TGG + chr7_1:69370072-69370091 None:intergenic 35.0%
TGATCGTTGTTGAATGTGAT+CGG + chr7_1:69370305-69370324 None:intergenic 35.0%
ACGAAAGTAAGGAAAAGAAG+GGG + chr7_1:69370377-69370396 None:intergenic 35.0%
CACGAAAGTAAGGAAAAGAA+GGG + chr7_1:69370378-69370397 None:intergenic 35.0%
TCACGAAAGTAAGGAAAAGA+AGG + chr7_1:69370379-69370398 None:intergenic 35.0%
! CTTTTCCTTACTTTCGTGAT+TGG - chr7_1:69370380-69370399 Msa1033980:intron 35.0%
GACAATGATACAAACCTTAG+GGG + chr7_1:69370431-69370450 None:intergenic 35.0%
CGACAATGATACAAACCTTA+GGG + chr7_1:69370432-69370451 None:intergenic 35.0%
ACGACAATGATACAAACCTT+AGG + chr7_1:69370433-69370452 None:intergenic 35.0%
!! GTCGTTTTCTTCATTATCCT+TGG - chr7_1:69370448-69370467 Msa1033980:CDS 35.0%
ATCAAATCAACCAGGTAATC+GGG + chr7_1:69370789-69370808 None:intergenic 35.0%
TATAACTACGAGTACTTCTG+CGG - chr7_1:69370835-69370854 Msa1033980:intron 35.0%
!! TTGTTTTTCCTTTGTTGAGC+AGG - chr7_1:69371186-69371205 Msa1033980:CDS 35.0%
! TGCATTCTGGATTTAAAGTG+TGG - chr7_1:69371253-69371272 Msa1033980:exon 35.0%
TTAAAGTTCCACATGCATTC+TGG - chr7_1:69371360-69371379 Msa1033980:five_prime_UTR 35.0%
!! AAGACATGGTCTTTGGAATT+TGG + chr7_1:69371406-69371425 None:intergenic 35.0%
GTGAATTTGGAGAAGAATGA+TGG + chr7_1:69370072-69370091 None:intergenic 35.0%
TGATCGTTGTTGAATGTGAT+CGG + chr7_1:69370305-69370324 None:intergenic 35.0%
ACGAAAGTAAGGAAAAGAAG+GGG + chr7_1:69370377-69370396 None:intergenic 35.0%
CACGAAAGTAAGGAAAAGAA+GGG + chr7_1:69370378-69370397 None:intergenic 35.0%
TCACGAAAGTAAGGAAAAGA+AGG + chr7_1:69370379-69370398 None:intergenic 35.0%
! CTTTTCCTTACTTTCGTGAT+TGG - chr7_1:69370380-69370399 Msa1033980:intron 35.0%
GACAATGATACAAACCTTAG+GGG + chr7_1:69370431-69370450 None:intergenic 35.0%
CGACAATGATACAAACCTTA+GGG + chr7_1:69370432-69370451 None:intergenic 35.0%
ACGACAATGATACAAACCTT+AGG + chr7_1:69370433-69370452 None:intergenic 35.0%
!! GTCGTTTTCTTCATTATCCT+TGG - chr7_1:69370448-69370467 Msa1033980:CDS 35.0%
ATCAAATCAACCAGGTAATC+GGG + chr7_1:69370789-69370808 None:intergenic 35.0%
TATAACTACGAGTACTTCTG+CGG - chr7_1:69370835-69370854 Msa1033980:intron 35.0%
!! TTGTTTTTCCTTTGTTGAGC+AGG - chr7_1:69371186-69371205 Msa1033980:CDS 35.0%
! TGCATTCTGGATTTAAAGTG+TGG - chr7_1:69371253-69371272 Msa1033980:exon 35.0%
TTAAAGTTCCACATGCATTC+TGG - chr7_1:69371360-69371379 Msa1033980:five_prime_UTR 35.0%
!! AAGACATGGTCTTTGGAATT+TGG + chr7_1:69371406-69371425 None:intergenic 35.0%
! TTGGTGTATCGTGTTGATGA+GGG + chr7_1:69370006-69370025 None:intergenic 40.0%
! TTTGGTGTATCGTGTTGATG+AGG + chr7_1:69370007-69370026 None:intergenic 40.0%
!! GAGAAGAATGATGGTGTTGT+TGG + chr7_1:69370063-69370082 None:intergenic 40.0%
TTAGAAGAAGGGGGTGAATT+TGG + chr7_1:69370085-69370104 None:intergenic 40.0%
AGAGTCCAATCACGAAAGTA+AGG + chr7_1:69370388-69370407 None:intergenic 40.0%
ATAACTACGAGTACTTCTGC+GGG - chr7_1:69370836-69370855 Msa1033980:intron 40.0%
ATCAATTCAACTCACCGGAA+TGG + chr7_1:69370975-69370994 None:intergenic 40.0%
TAGAGGAGCAACAAGCTAAA+AGG - chr7_1:69371114-69371133 Msa1033980:CDS 40.0%
TTCCACATGCATTCTGGATT+TGG - chr7_1:69371366-69371385 Msa1033980:five_prime_UTR 40.0%
AACCAAATCCAGAATGCATG+TGG + chr7_1:69371371-69371390 None:intergenic 40.0%
! CATGCATTCTGGATTTGGTT+TGG - chr7_1:69371371-69371390 Msa1033980:five_prime_UTR 40.0%
TTAGAACAGATCATTGGCAG+AGG - chr7_1:69371436-69371455 Msa1033980:five_prime_UTR 40.0%
! TTGGTGTATCGTGTTGATGA+GGG + chr7_1:69370006-69370025 None:intergenic 40.0%
! TTTGGTGTATCGTGTTGATG+AGG + chr7_1:69370007-69370026 None:intergenic 40.0%
!! GAGAAGAATGATGGTGTTGT+TGG + chr7_1:69370063-69370082 None:intergenic 40.0%
TTAGAAGAAGGGGGTGAATT+TGG + chr7_1:69370085-69370104 None:intergenic 40.0%
AGAGTCCAATCACGAAAGTA+AGG + chr7_1:69370388-69370407 None:intergenic 40.0%
ATAACTACGAGTACTTCTGC+GGG - chr7_1:69370836-69370855 Msa1033980:intron 40.0%
ATCAATTCAACTCACCGGAA+TGG + chr7_1:69370975-69370994 None:intergenic 40.0%
TAGAGGAGCAACAAGCTAAA+AGG - chr7_1:69371114-69371133 Msa1033980:CDS 40.0%
TTCCACATGCATTCTGGATT+TGG - chr7_1:69371366-69371385 Msa1033980:five_prime_UTR 40.0%
AACCAAATCCAGAATGCATG+TGG + chr7_1:69371371-69371390 None:intergenic 40.0%
! CATGCATTCTGGATTTGGTT+TGG - chr7_1:69371371-69371390 Msa1033980:five_prime_UTR 40.0%
TTAGAACAGATCATTGGCAG+AGG - chr7_1:69371436-69371455 Msa1033980:five_prime_UTR 40.0%
! ATCGTGTTGATGAGGGAAGA+AGG + chr7_1:69369999-69370018 None:intergenic 45.0%
GAGGTGCAATTAGAAGAAGG+GGG + chr7_1:69370094-69370113 None:intergenic 45.0%
! GGAGGTGCAATTAGAAGAAG+GGG + chr7_1:69370095-69370114 None:intergenic 45.0%
! GGGAGGTGCAATTAGAAGAA+GGG + chr7_1:69370096-69370115 None:intergenic 45.0%
! TGGGAGGTGCAATTAGAAGA+AGG + chr7_1:69370097-69370116 None:intergenic 45.0%
TAATTGCACCTCCCACACAA+TGG - chr7_1:69370102-69370121 Msa1033980:intron 45.0%
TGGTTAAGAGAAGGAGGAGA+CGG + chr7_1:69370168-69370187 None:intergenic 45.0%
TCGTTGTTGAATGTGATCGG+AGG + chr7_1:69370302-69370321 None:intergenic 45.0%
TCCGATTGCTCTAGTCTCTT+CGG - chr7_1:69370340-69370359 Msa1033980:intron 45.0%
ACAAACCTTAGGGGAGAGAT+CGG + chr7_1:69370422-69370441 None:intergenic 45.0%
AACAGTCACCTGCTCAACAA+AGG + chr7_1:69371197-69371216 None:intergenic 45.0%
!! GGCAGAGGTTTGTGTTTTGA+CGG - chr7_1:69371451-69371470 Msa1033980:five_prime_UTR 45.0%
! ATCGTGTTGATGAGGGAAGA+AGG + chr7_1:69369999-69370018 None:intergenic 45.0%
GAGGTGCAATTAGAAGAAGG+GGG + chr7_1:69370094-69370113 None:intergenic 45.0%
! GGAGGTGCAATTAGAAGAAG+GGG + chr7_1:69370095-69370114 None:intergenic 45.0%
! GGGAGGTGCAATTAGAAGAA+GGG + chr7_1:69370096-69370115 None:intergenic 45.0%
! TGGGAGGTGCAATTAGAAGA+AGG + chr7_1:69370097-69370116 None:intergenic 45.0%
TAATTGCACCTCCCACACAA+TGG - chr7_1:69370102-69370121 Msa1033980:intron 45.0%
TGGTTAAGAGAAGGAGGAGA+CGG + chr7_1:69370168-69370187 None:intergenic 45.0%
TCGTTGTTGAATGTGATCGG+AGG + chr7_1:69370302-69370321 None:intergenic 45.0%
TCCGATTGCTCTAGTCTCTT+CGG - chr7_1:69370340-69370359 Msa1033980:intron 45.0%
ACAAACCTTAGGGGAGAGAT+CGG + chr7_1:69370422-69370441 None:intergenic 45.0%
AACAGTCACCTGCTCAACAA+AGG + chr7_1:69371197-69371216 None:intergenic 45.0%
GTTTGCACCTGCCATTGTGT+GGG + chr7_1:69370116-69370135 None:intergenic 50.0%
TGTTTGCACCTGCCATTGTG+TGG + chr7_1:69370117-69370136 None:intergenic 50.0%
GGTTAAGAGAAGGAGGAGAC+GGG + chr7_1:69370167-69370186 None:intergenic 50.0%
GGAGGATGGTTAAGAGAAGG+AGG + chr7_1:69370174-69370193 None:intergenic 50.0%
GAGGGAGGATGGTTAAGAGA+AGG + chr7_1:69370177-69370196 None:intergenic 50.0%
!! GTTTTGATCGGGTGACCAAC+GGG + chr7_1:69370260-69370279 None:intergenic 50.0%
!! GGTTTTGATCGGGTGACCAA+CGG + chr7_1:69370261-69370280 None:intergenic 50.0%
!! ACCGGGGAAGAGGTTTTGAT+CGG + chr7_1:69370272-69370291 None:intergenic 50.0%
TGATCGGAGGTTGACATACC+GGG + chr7_1:69370289-69370308 None:intergenic 50.0%
GTGATCGGAGGTTGACATAC+CGG + chr7_1:69370290-69370309 None:intergenic 50.0%
GAGCAATCGGAATGTGAACG+AGG + chr7_1:69370331-69370350 None:intergenic 50.0%
GCCGAAGAGACTAGAGCAAT+CGG + chr7_1:69370344-69370363 None:intergenic 50.0%
TACGAGTACTTCTGCGGGTT+TGG - chr7_1:69370841-69370860 Msa1033980:intron 50.0%
! GTTTGGAGCAGACACTACCA+TGG - chr7_1:69370858-69370877 Msa1033980:intron 50.0%
TCATTGCTAGCGTGCTTTCG+CGG - chr7_1:69371335-69371354 Msa1033980:five_prime_UTR 50.0%
GTTTGCACCTGCCATTGTGT+GGG + chr7_1:69370116-69370135 None:intergenic 50.0%
TGTTTGCACCTGCCATTGTG+TGG + chr7_1:69370117-69370136 None:intergenic 50.0%
GGTTAAGAGAAGGAGGAGAC+GGG + chr7_1:69370167-69370186 None:intergenic 50.0%
GGAGGATGGTTAAGAGAAGG+AGG + chr7_1:69370174-69370193 None:intergenic 50.0%
GAGGGAGGATGGTTAAGAGA+AGG + chr7_1:69370177-69370196 None:intergenic 50.0%
!! GTTTTGATCGGGTGACCAAC+GGG + chr7_1:69370260-69370279 None:intergenic 50.0%
!! GGTTTTGATCGGGTGACCAA+CGG + chr7_1:69370261-69370280 None:intergenic 50.0%
!! ACCGGGGAAGAGGTTTTGAT+CGG + chr7_1:69370272-69370291 None:intergenic 50.0%
TGATCGGAGGTTGACATACC+GGG + chr7_1:69370289-69370308 None:intergenic 50.0%
GTGATCGGAGGTTGACATAC+CGG + chr7_1:69370290-69370309 None:intergenic 50.0%
GAGCAATCGGAATGTGAACG+AGG + chr7_1:69370331-69370350 None:intergenic 50.0%
GCCGAAGAGACTAGAGCAAT+CGG + chr7_1:69370344-69370363 None:intergenic 50.0%
TACGAGTACTTCTGCGGGTT+TGG - chr7_1:69370841-69370860 Msa1033980:intron 50.0%
! GTTTGGAGCAGACACTACCA+TGG - chr7_1:69370858-69370877 Msa1033980:intron 50.0%
TCATTGCTAGCGTGCTTTCG+CGG - chr7_1:69371335-69371354 Msa1033980:five_prime_UTR 50.0%
TAAGAGAAGGAGGAGACGGG+AGG + chr7_1:69370164-69370183 None:intergenic 55.0%
TTGGAGGAGGAAAGCGAAGG+CGG + chr7_1:69370209-69370228 None:intergenic 55.0%
CCATTGGAGGAGGAAAGCGA+AGG + chr7_1:69370212-69370231 None:intergenic 55.0%
CCTTCGCTTTCCTCCTCCAA+TGG - chr7_1:69370209-69370228 Msa1033980:intron 55.0%
!! CCGGGGAAGAGGTTTTGATC+GGG + chr7_1:69370271-69370290 None:intergenic 55.0%
CCCGATCAAAACCTCTTCCC+CGG - chr7_1:69370268-69370287 Msa1033980:CDS 55.0%
AGGTTGACATACCGGGGAAG+AGG + chr7_1:69370282-69370301 None:intergenic 55.0%
GATCGGAGGTTGACATACCG+GGG + chr7_1:69370288-69370307 None:intergenic 55.0%
AACCTTAGGGGAGAGATCGG+AGG + chr7_1:69370419-69370438 None:intergenic 55.0%
TGAGTCTGAGCCCGATTACC+TGG - chr7_1:69370776-69370795 Msa1033980:intron 55.0%
TAAGAGAAGGAGGAGACGGG+AGG + chr7_1:69370164-69370183 None:intergenic 55.0%
TTGGAGGAGGAAAGCGAAGG+CGG + chr7_1:69370209-69370228 None:intergenic 55.0%
CCATTGGAGGAGGAAAGCGA+AGG + chr7_1:69370212-69370231 None:intergenic 55.0%
CCTTCGCTTTCCTCCTCCAA+TGG - chr7_1:69370209-69370228 Msa1033980:intron 55.0%
!! CCGGGGAAGAGGTTTTGATC+GGG + chr7_1:69370271-69370290 None:intergenic 55.0%
CCCGATCAAAACCTCTTCCC+CGG - chr7_1:69370268-69370287 Msa1033980:CDS 55.0%
AGGTTGACATACCGGGGAAG+AGG + chr7_1:69370282-69370301 None:intergenic 55.0%
GATCGGAGGTTGACATACCG+GGG + chr7_1:69370288-69370307 None:intergenic 55.0%
AACCTTAGGGGAGAGATCGG+AGG + chr7_1:69370419-69370438 None:intergenic 55.0%
TGAGTCTGAGCCCGATTACC+TGG - chr7_1:69370776-69370795 Msa1033980:intron 55.0%
TGCACCTCCCACACAATGGC+AGG - chr7_1:69370106-69370125 Msa1033980:intron 60.0%
TGCACCTGCCATTGTGTGGG+AGG + chr7_1:69370113-69370132 None:intergenic 60.0%
GCTTTCCTCCTCCAATGGCG+CGG - chr7_1:69370214-69370233 Msa1033980:intron 60.0%
TGACCAACGGGTGACAGGGT+CGG + chr7_1:69370248-69370267 None:intergenic 60.0%
CTCCTCCGATCTCTCCCCTA+AGG - chr7_1:69370414-69370433 Msa1033980:CDS 60.0%
TGCACCTCCCACACAATGGC+AGG - chr7_1:69370106-69370125 Msa1033980:intron 60.0%
TGCACCTGCCATTGTGTGGG+AGG + chr7_1:69370113-69370132 None:intergenic 60.0%
GCTTTCCTCCTCCAATGGCG+CGG - chr7_1:69370214-69370233 Msa1033980:intron 60.0%
TGACCAACGGGTGACAGGGT+CGG + chr7_1:69370248-69370267 None:intergenic 60.0%
CTCCTCCGATCTCTCCCCTA+AGG - chr7_1:69370414-69370433 Msa1033980:CDS 60.0%
! GAGGTGGAGGAAGTGGTGGG+GGG + chr7_1:69370145-69370164 None:intergenic 65.0%
GGAGGTGGAGGAAGTGGTGG+GGG + chr7_1:69370146-69370165 None:intergenic 65.0%
GGGAGGTGGAGGAAGTGGTG+GGG + chr7_1:69370147-69370166 None:intergenic 65.0%
CGGGAGGTGGAGGAAGTGGT+GGG + chr7_1:69370148-69370167 None:intergenic 65.0%
ACGGGAGGTGGAGGAAGTGG+TGG + chr7_1:69370149-69370168 None:intergenic 65.0%
GAGACGGGAGGTGGAGGAAG+TGG + chr7_1:69370152-69370171 None:intergenic 65.0%
AAGGAGGAGACGGGAGGTGG+AGG + chr7_1:69370158-69370177 None:intergenic 65.0%
GAGAAGGAGGAGACGGGAGG+TGG + chr7_1:69370161-69370180 None:intergenic 65.0%
GAGGAAAGCGAAGGCGGCGA+GGG + chr7_1:69370203-69370222 None:intergenic 65.0%
TTCCTCCTCCAATGGCGCGG+CGG - chr7_1:69370217-69370236 Msa1033980:intron 65.0%
TCACCGACCCTGTCACCCGT+TGG - chr7_1:69370242-69370261 Msa1033980:intron 65.0%
CGGGTGACCAACGGGTGACA+GGG + chr7_1:69370252-69370271 None:intergenic 65.0%
TCGGGTGACCAACGGGTGAC+AGG + chr7_1:69370253-69370272 None:intergenic 65.0%
! GAGGTGGAGGAAGTGGTGGG+GGG + chr7_1:69370145-69370164 None:intergenic 65.0%
GGAGGTGGAGGAAGTGGTGG+GGG + chr7_1:69370146-69370165 None:intergenic 65.0%
GGGAGGTGGAGGAAGTGGTG+GGG + chr7_1:69370147-69370166 None:intergenic 65.0%
CGGGAGGTGGAGGAAGTGGT+GGG + chr7_1:69370148-69370167 None:intergenic 65.0%
ACGGGAGGTGGAGGAAGTGG+TGG + chr7_1:69370149-69370168 None:intergenic 65.0%
GAGACGGGAGGTGGAGGAAG+TGG + chr7_1:69370152-69370171 None:intergenic 65.0%
AAGGAGGAGACGGGAGGTGG+AGG + chr7_1:69370158-69370177 None:intergenic 65.0%
GAGAAGGAGGAGACGGGAGG+TGG + chr7_1:69370161-69370180 None:intergenic 65.0%
GAGGAAAGCGAAGGCGGCGA+GGG + chr7_1:69370203-69370222 None:intergenic 65.0%
TTCCTCCTCCAATGGCGCGG+CGG - chr7_1:69370217-69370236 Msa1033980:intron 65.0%
TCACCGACCCTGTCACCCGT+TGG - chr7_1:69370242-69370261 Msa1033980:intron 65.0%
CGGGTGACCAACGGGTGACA+GGG + chr7_1:69370252-69370271 None:intergenic 65.0%
TCGGGTGACCAACGGGTGAC+AGG + chr7_1:69370253-69370272 None:intergenic 65.0%
GGCGAGGGTGAGAGGGAGGA+TGG + chr7_1:69370188-69370207 None:intergenic 70.0%
CGAAGGCGGCGAGGGTGAGA+GGG + chr7_1:69370195-69370214 None:intergenic 70.0%
GGAGGAAAGCGAAGGCGGCG+AGG + chr7_1:69370204-69370223 None:intergenic 70.0%
GGCGAGGGTGAGAGGGAGGA+TGG + chr7_1:69370188-69370207 None:intergenic 70.0%
CGAAGGCGGCGAGGGTGAGA+GGG + chr7_1:69370195-69370214 None:intergenic 70.0%
GGAGGAAAGCGAAGGCGGCG+AGG + chr7_1:69370204-69370223 None:intergenic 70.0%
AGGCGGCGAGGGTGAGAGGG+AGG + chr7_1:69370192-69370211 None:intergenic 75.0%
GCGAAGGCGGCGAGGGTGAG+AGG + chr7_1:69370196-69370215 None:intergenic 75.0%
TGACGCCGCCGCGCCATTGG+AGG + chr7_1:69370225-69370244 None:intergenic 75.0%
AGGCGGCGAGGGTGAGAGGG+AGG + chr7_1:69370192-69370211 None:intergenic 75.0%
GCGAAGGCGGCGAGGGTGAG+AGG + chr7_1:69370196-69370215 None:intergenic 75.0%
TGACGCCGCCGCGCCATTGG+AGG + chr7_1:69370225-69370244 None:intergenic 75.0%
! CGCCGCCGCGCCATTGGAGG+AGG + chr7_1:69370222-69370241 None:intergenic 80.0%
! CGGTGACGCCGCCGCGCCAT+TGG + chr7_1:69370228-69370247 None:intergenic 80.0%
! CGCCGCCGCGCCATTGGAGG+AGG + chr7_1:69370222-69370241 None:intergenic 80.0%
! CGGTGACGCCGCCGCGCCAT+TGG + chr7_1:69370228-69370247 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 69369921 69371470 69369921 ID=Msa1033980;Name=Msa1033980
chr7_1 mRNA 69369921 69371470 69369921 ID=Msa1033980-mRNA-1;Parent=Msa1033980;Name=Msa1033980-mRNA-1;_AED=0.04;_eAED=0.04;_QI=200|0.66|0.5|0.75|1|1|4|0|182
chr7_1 exon 69369921 69369951 69369921 ID=Msa1033980-mRNA-1:exon:16282;Parent=Msa1033980-mRNA-1
chr7_1 exon 69370256 69370308 69370256 ID=Msa1033980-mRNA-1:exon:16281;Parent=Msa1033980-mRNA-1
chr7_1 exon 69370412 69370561 69370412 ID=Msa1033980-mRNA-1:exon:16280;Parent=Msa1033980-mRNA-1
chr7_1 exon 69370956 69371470 69370956 ID=Msa1033980-mRNA-1:exon:16279;Parent=Msa1033980-mRNA-1
chr7_1 five_prime_UTR 69371271 69371470 69371271 ID=Msa1033980-mRNA-1:five_prime_utr;Parent=Msa1033980-mRNA-1
chr7_1 CDS 69370956 69371270 69370956 ID=Msa1033980-mRNA-1:cds;Parent=Msa1033980-mRNA-1
chr7_1 CDS 69370412 69370561 69370412 ID=Msa1033980-mRNA-1:cds;Parent=Msa1033980-mRNA-1
chr7_1 CDS 69370256 69370308 69370256 ID=Msa1033980-mRNA-1:cds;Parent=Msa1033980-mRNA-1
chr7_1 CDS 69369921 69369951 69369921 ID=Msa1033980-mRNA-1:cds;Parent=Msa1033980-mRNA-1
Gene Sequence

>Msa1033980

ATGGCAGGTGCAAACAAACATCCCCCCACCACTTCCTCCACCTCCCGTCTCCTCCTTCTCTTAACCATCCTCCCTCTCACCCTCGCCGCCTTCGCTTTCCTCCTCCAATGGCGCGGCGGCGTCACCGACCCTGTCACCCGTTGGTCACCCGATCAAAACCTCTTCCCCGGTATGTCAACCTCCGATCACATTCAACAACGATCACAACCTCGTTCACATTCCGATTGCTCTAGTCTCTTCGGCAATACTCATTCCCCTTCTTTTCCTTACTTTCGTGATTGGACTCTTGATTTCTCCTCCGATCTCTCCCCTAAGATATGTATAACTACGAGTACTTCTGCGGGTTTGGAGCAGACACTACCATGGATTTATTATCATAAAGTTATGGGAGTTTCAAGTTTTTTACTTTTTGTTGAAGGGAAAGCTGCGTCGCCTAATGTATCTAGAGTTTTAGAAACCATTCCGGGGGTTAAAGTTATATATAGAACAAGAGAATTAGAGGAGCAACAAGCTAAAAGAACAGATCATTGGCAGAGGTTTGTGTTTTGA
Protein sequence

>Msa1033980

MAGANKHPPTTSSTSRLLLLLTILPLTLAAFAFLLQWRGGVTDPVTRWSPDQNLFPGMSTSDHIQQRSQPRSHSDCSSLFGNTHSPSFPYFRDWTLDFSSDLSPKICITTSTSAGLEQTLPWIYYHKVMGVSSFLLFVEGKAASPNVSRVLETIPGVKVIYRTRELEEQQAKRTDHWQRFVF*