AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0013050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0013050 MtrunA17_Chr1g0162201 97.306 297 8 0 1 297 1 297 0.0 589
Msa0013050 MtrunA17_Chr8g0375261 83.972 287 46 0 11 297 8 294 0.0 503
Msa0013050 MtrunA17_Chr4g0050391 58.484 277 115 0 21 297 13 289 7.23e-121 348
Msa0013050 MtrunA17_Chr2g0288191 60.392 255 101 0 43 297 30 284 2.79e-111 323
Msa0013050 MtrunA17_Chr4g0074691 56.884 276 119 0 22 297 3 278 2.44e-106 310
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0013050 AT2G02180.1 82.918 281 48 0 17 297 23 303 3.66e-177 491
Msa0013050 AT1G14530.2 80.496 282 55 0 16 297 12 293 8.44e-164 457
Msa0013050 AT1G14530.1 78.855 227 48 0 16 242 12 238 1.34e-134 381
Msa0013050 AT4G21790.1 59.286 280 114 0 18 297 12 291 1.31e-123 355

Find 90 sgRNAs with CRISPR-Local

Find 569 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGTGGTTGATTATTTATT+TGG 0.166410 1_1:+20199262 Msa0013050:three_prime_UTR
ATGCACTCCTGGTCTTGTTC+TGG 0.183134 1_1:+20193620 Msa0013050:CDS
CTGTCAAAGGTGTTCTTTGC+AGG 0.214899 1_1:+20196515 Msa0013050:CDS
GGAAATATTACCTTCTTCTT+TGG 0.262599 1_1:+20199143 Msa0013050:CDS
TGGGAACGATCGACGGAGTT+TGG 0.282109 1_1:-20191122 None:intergenic
GATTGAAAATACCGAGAAAA+AGG 0.299833 1_1:+20199234 Msa0013050:three_prime_UTR
TGGGTAGTCCAACCATATTC+TGG 0.305600 1_1:-20191492 None:intergenic
TGAGAAAATGAAACACCTTC+TGG 0.307420 1_1:-20191512 None:intergenic
CAATTGAGAGTTCCAGAATA+TGG 0.308572 1_1:+20191480 Msa0013050:CDS
TGTTGTGGTTTATGCTGTTC+AGG 0.311273 1_1:+20193827 Msa0013050:CDS
GGGAACGATCGACGGAGTTT+GGG 0.318317 1_1:-20191121 None:intergenic
GAATTTGTAGTTTGCTTGCT+AGG 0.331735 1_1:-20191045 None:intergenic
TACACCCTCGCCGGCCTTTA+CGG 0.339761 1_1:+20191279 Msa0013050:CDS
TTTCCTTATCAGAAGTGTTA+TGG 0.345609 1_1:+20198673 Msa0013050:CDS
TGCACTCCTGGTCTTGTTCT+GGG 0.356099 1_1:+20193621 Msa0013050:CDS
CAGCTTCTTACGACGCCCTT+TGG 0.359651 1_1:-20197225 None:intergenic
GTTTCTTTGTTTGCTGCCCT+TGG 0.365159 1_1:+20196637 Msa0013050:CDS
CGACGCCCTTTGGATTCAAC+AGG 0.380572 1_1:-20197215 None:intergenic
TAGGATGGTCCATCACATTA+AGG 0.382104 1_1:-20198810 None:intergenic
CTGGGCTGAGATTTATTACC+AGG 0.402191 1_1:+20193639 Msa0013050:CDS
AATTTGTAGTTTGCTTGCTA+GGG 0.421160 1_1:-20191044 None:intergenic
CGTCGTTTCCGCCATAGCTT+TGG 0.423002 1_1:+20191302 Msa0013050:CDS
GCCCTTGGCTTTCTTCTCTA+CGG 0.437396 1_1:+20196652 Msa0013050:CDS
GAGAAAATGAAACACCTTCT+GGG 0.439545 1_1:-20191511 None:intergenic
GAACGACATCGACGATTCTC+CGG 0.444368 1_1:+20191236 Msa0013050:CDS
CTTTACAACATATGCACTCC+TGG 0.447845 1_1:+20193609 Msa0013050:CDS
AAGATGCGGTCTTGCCAAAC+CGG 0.453837 1_1:-20191255 None:intergenic
TGCTTGCTAGGGGCTAAGAT+TGG 0.456523 1_1:-20191033 None:intergenic
ACCTCGCCGTCGTCGGTGAC+AGG 0.458409 1_1:+20191159 Msa0013050:CDS
TGCTAGGGGCTAAGATTGGT+GGG 0.458604 1_1:-20191029 None:intergenic
TTGCTAGGGGCTAAGATTGG+TGG 0.458865 1_1:-20191030 None:intergenic
CGAGGTGTTGTTGGTCATTG+TGG 0.466760 1_1:-20191142 None:intergenic
GTTCCACCAGGTTGAGGAAT+CGG 0.468815 1_1:-20191217 None:intergenic
CGCTTTCCTGTTGAATCCAA+AGG 0.469858 1_1:+20197209 Msa0013050:CDS
ACATTAATTGTATAGAAACT+TGG 0.472412 1_1:-20193807 None:intergenic
TCACCATAACACTTCTGATA+AGG 0.473201 1_1:-20198676 None:intergenic
CGACGACGGCGAGGTGTTGT+TGG 0.475128 1_1:-20191151 None:intergenic
ACATCGACGATTCTCCGGTT+TGG 0.476060 1_1:+20191241 Msa0013050:CDS
GCACATCAAGTAAGATATGT+TGG 0.497834 1_1:-20193573 None:intergenic
GCTTTCTTCTCTACGGTGGA+AGG 0.504569 1_1:+20196659 Msa0013050:CDS
TAATATATGAAGTTTAGAAT+AGG 0.508408 1_1:-20198829 None:intergenic
TTTCTATACAATTAATGTTG+TGG 0.510519 1_1:+20193812 Msa0013050:CDS
TGGCGGAAACGACGCCGTAA+AGG 0.516515 1_1:-20191293 None:intergenic
TGAGAGTTCCAGAATATGGT+TGG 0.518623 1_1:+20191484 Msa0013050:CDS
GAGGTGTTGTTGGTCATTGT+GGG 0.519647 1_1:-20191141 None:intergenic
ATCGTCGATGTCGTTCCACC+AGG 0.520262 1_1:-20191229 None:intergenic
GGAAACGACGCCGTAAAGGC+CGG 0.530370 1_1:-20191289 None:intergenic
GCTTTCCTGTTGAATCCAAA+GGG 0.544156 1_1:+20197210 Msa0013050:CDS
TGGCTGATTCTCATAGTCCA+AGG 0.544934 1_1:+20199282 Msa0013050:three_prime_UTR
CGTACTAGTCATTCTGTCAA+AGG 0.558597 1_1:+20196502 Msa0013050:CDS
GCACGTGCTGTATCCACTGA+TGG 0.558795 1_1:+20193777 Msa0013050:CDS
TATTGTGTGATACCACGCTT+TGG 0.559304 1_1:-20199192 None:intergenic
GGAGTTTGGGGCACACGCGC+CGG 0.561727 1_1:-20191108 None:intergenic
GTCATTGTGGGAACGATCGA+CGG 0.562849 1_1:-20191129 None:intergenic
GATGTCGTTCCACCAGGTTG+AGG 0.564379 1_1:-20191223 None:intergenic
AAATGCGAACCTTAATGTGA+TGG 0.567249 1_1:+20198801 Msa0013050:CDS
ATGAACAAGACCAAAGAAGA+AGG 0.568688 1_1:-20199153 None:intergenic
ATGAGAAGGTACCAAAGCTA+TGG 0.571420 1_1:-20191313 None:intergenic
CGACGCCGTAAAGGCCGGCG+AGG 0.579591 1_1:-20191284 None:intergenic
GGCTGATTCTCATAGTCCAA+GGG 0.583266 1_1:+20199283 Msa0013050:three_prime_UTR
GACAGGCGCGGTGGTGAACG+CGG 0.588632 1_1:+20191176 Msa0013050:CDS
TCTAAACTTCATATATTACC+TGG 0.590927 1_1:+20198834 Msa0013050:CDS
TGTGTGATACCACGCTTTGG+TGG 0.591434 1_1:-20199189 None:intergenic
AACTCACCGATTCCTCAACC+TGG 0.591877 1_1:+20191211 Msa0013050:CDS
CTTGGCTTTCTTCTCTACGG+TGG 0.595848 1_1:+20196655 Msa0013050:CDS
ACCGTAGAGAAGAAAGCCAA+GGG 0.603119 1_1:-20196653 None:intergenic
ATTTGTAGTTTGCTTGCTAG+GGG 0.606723 1_1:-20191043 None:intergenic
CAACAACACCTCGCCGTCGT+CGG 0.609317 1_1:+20191152 Msa0013050:CDS
GCCGTCGTCGGTGACAGGCG+CGG 0.609384 1_1:+20191164 Msa0013050:CDS
GACGCCGTAAAGGCCGGCGA+GGG 0.609478 1_1:-20191283 None:intergenic
CACCGTAGAGAAGAAAGCCA+AGG 0.609487 1_1:-20196654 None:intergenic
ACTTGGCTTCAGTCCATCAG+TGG 0.611275 1_1:-20193790 None:intergenic
GTTGTAAAGAAAGCAAGACT+TGG 0.617097 1_1:-20193595 None:intergenic
AGAATGACTAGTACGCTGAC+TGG 0.622590 1_1:-20196494 None:intergenic
AGAAGGTACCAAAGCTATGG+CGG 0.625010 1_1:-20191310 None:intergenic
ACCGCGCCTGTCACCGACGA+CGG 0.629626 1_1:-20191165 None:intergenic
CGCATCTTCTACACCCTCGC+CGG 0.632929 1_1:+20191270 Msa0013050:CDS
TCTCAGCCCAGAACAAGACC+AGG 0.637637 1_1:-20193627 None:intergenic
AGGAAGCTTCCACCAAAGCG+TGG 0.641984 1_1:+20199180 Msa0013050:CDS
GGAACGATCGACGGAGTTTG+GGG 0.648473 1_1:-20191120 None:intergenic
ATATGAAGTTTAGAATAGGA+TGG 0.649295 1_1:-20198825 None:intergenic
GCCTGTCACCGACGACGGCG+AGG 0.655892 1_1:-20191160 None:intergenic
CGGCGAGGGTGTAGAAGATG+CGG 0.656168 1_1:-20191269 None:intergenic
ATATGGTTGGACTACCCAGA+AGG 0.660843 1_1:+20191497 Msa0013050:CDS
TCTTCTTTCGGAATGTACAG+AGG 0.665668 1_1:+20191692 Msa0013050:CDS
GCGTCGTAAGAAGCTGCAAG+AGG 0.671751 1_1:+20197232 Msa0013050:CDS
GTCGTCGGTGACAGGCGCGG+TGG 0.677193 1_1:+20191167 Msa0013050:CDS
AGGCGCGGTGGTGAACGCGG+TGG 0.685538 1_1:+20191179 Msa0013050:CDS
TGTACAGAGGTTACAGCCAG+AGG 0.691850 1_1:+20191705 Msa0013050:CDS
TCACCGATTCCTCAACCTGG+TGG 0.693137 1_1:+20191214 Msa0013050:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATGTAAAATTACATAAA+AGG - chr1_1:20192717-20192736 None:intergenic 10.0%
!!! ATTTTGTTTTTATAAAAAAG+GGG - chr1_1:20194813-20194832 None:intergenic 10.0%
!!! GATTTTGTTTTTATAAAAAA+GGG - chr1_1:20194814-20194833 None:intergenic 10.0%
!!! TGATTTTGTTTTTATAAAAA+AGG - chr1_1:20194815-20194834 None:intergenic 10.0%
!! AATAAAAACAAAAAAAAGAT+TGG - chr1_1:20196428-20196447 None:intergenic 10.0%
!!! TTAATTTCTTTTTTTTTTGT+TGG + chr1_1:20196686-20196705 Msa0013050:intron 10.0%
!! ATCAAAAATTGAAAAATTTA+AGG + chr1_1:20197045-20197064 Msa0013050:intron 10.0%
!! TAATGATGTTAATATATATT+GGG - chr1_1:20197615-20197634 None:intergenic 10.0%
!! TTAATGATGTTAATATATAT+TGG - chr1_1:20197616-20197635 None:intergenic 10.0%
!! ATTAGAGATATATTAATATT+TGG - chr1_1:20197994-20198013 None:intergenic 10.0%
!!! ATTTTGATTTAAAAATAGAA+GGG - chr1_1:20198704-20198723 None:intergenic 10.0%
!!! AATTTTGATTTAAAAATAGA+AGG - chr1_1:20198705-20198724 None:intergenic 10.0%
!! AAAAAAAAAAAAACAAACAC+CGG + chr1_1:20191089-20191108 Msa0013050:five_prime_UTR 15.0%
!!! ATTATTTTTCTTTCCAATTT+AGG + chr1_1:20191386-20191405 Msa0013050:intron 15.0%
!!! TTATTTTTCTTTCCAATTTA+GGG + chr1_1:20191387-20191406 Msa0013050:intron 15.0%
!! GAATTTAGTTAGAATAATAA+GGG - chr1_1:20192297-20192316 None:intergenic 15.0%
!!! ACATGAAAATTGATTTTTTT+AGG - chr1_1:20192608-20192627 None:intergenic 15.0%
!! TTTATTATATAAATGAACTC+TGG - chr1_1:20192689-20192708 None:intergenic 15.0%
!! TGATATATGATGAAATATTA+TGG + chr1_1:20193243-20193262 Msa0013050:intron 15.0%
!!! TGTTGTATATGATTTTTATT+AGG + chr1_1:20193318-20193337 Msa0013050:intron 15.0%
!! AAAAAATAATGACTGTAATA+TGG - chr1_1:20194426-20194445 None:intergenic 15.0%
!! AATTAAAATTATGAGTTGTT+AGG - chr1_1:20197371-20197390 None:intergenic 15.0%
!! TAACTTAAGAATTCAAAAAA+AGG - chr1_1:20197586-20197605 None:intergenic 15.0%
!! TCTCTAATAAAGTAATTATT+TGG + chr1_1:20198006-20198025 Msa0013050:intron 15.0%
!! CTCTAATAAAGTAATTATTT+GGG + chr1_1:20198007-20198026 Msa0013050:intron 15.0%
!!! TTTTGATTTAAAAATAGAAG+GGG - chr1_1:20198703-20198722 None:intergenic 15.0%
!!! TAATATATGAAGTTTAGAAT+AGG - chr1_1:20198832-20198851 None:intergenic 15.0%
!!! TGCTGTTTAATTTTATTTTT+TGG + chr1_1:20198907-20198926 Msa0013050:intron 15.0%
!!! ATTTTATTTTTTGGTAAGAT+TGG + chr1_1:20198916-20198935 Msa0013050:intron 15.0%
!! AAGTAAATAAAACCCTAAAT+TGG - chr1_1:20191402-20191421 None:intergenic 20.0%
!!! TTAGTGATATGTAAACTTTT+TGG + chr1_1:20191643-20191662 Msa0013050:intron 20.0%
!! GGAATTTAGTTAGAATAATA+AGG - chr1_1:20192298-20192317 None:intergenic 20.0%
!! GAAATGAAAGAGAATATTAA+GGG - chr1_1:20192328-20192347 None:intergenic 20.0%
!! TGAAATGAAAGAGAATATTA+AGG - chr1_1:20192329-20192348 None:intergenic 20.0%
!!! TTGATTTTTTTAGGAACTAT+GGG - chr1_1:20192599-20192618 None:intergenic 20.0%
!!! ATTGATTTTTTTAGGAACTA+TGG - chr1_1:20192600-20192619 None:intergenic 20.0%
!! TGATGATTACAATTGATTAA+CGG - chr1_1:20193380-20193399 None:intergenic 20.0%
!!! TATTCTTATTTGTAAAGAAC+AGG + chr1_1:20193488-20193507 Msa0013050:intron 20.0%
!!! ATTCTTATTTGTAAAGAACA+GGG + chr1_1:20193489-20193508 Msa0013050:intron 20.0%
!! ACATTAATTGTATAGAAACT+TGG - chr1_1:20193810-20193829 None:intergenic 20.0%
!! TTTCTATACAATTAATGTTG+TGG + chr1_1:20193812-20193831 Msa0013050:CDS 20.0%
!! GATTATATTACAATAGCTTA+AGG - chr1_1:20194052-20194071 None:intergenic 20.0%
!!! GAACATTTAACTTTTATGTA+GGG - chr1_1:20195286-20195305 None:intergenic 20.0%
!!! ACTTAGATAAAAGTTCTAAA+CGG + chr1_1:20195407-20195426 Msa0013050:intron 20.0%
!!! AATATACTGTTTTCAAACTA+TGG + chr1_1:20195465-20195484 Msa0013050:intron 20.0%
!! TGATAAATTGAAAGAAGTAA+AGG - chr1_1:20196566-20196585 None:intergenic 20.0%
!!! TCAATTTATCAAGACTTTTA+CGG + chr1_1:20196575-20196594 Msa0013050:intron 20.0%
!!! AGTAGTTCTATTATATTAGT+GGG - chr1_1:20197305-20197324 None:intergenic 20.0%
!!! TAGTAGTTCTATTATATTAG+TGG - chr1_1:20197306-20197325 None:intergenic 20.0%
!! TGTAAACTAGAAAAAAAAAG+AGG + chr1_1:20197707-20197726 Msa0013050:intron 20.0%
!!! AAATCAAAATTGATTCCTAT+TGG + chr1_1:20198714-20198733 Msa0013050:intron 20.0%
!! GTTTCATTTTCTCAATTTTG+TGG + chr1_1:20191521-20191540 Msa0013050:CDS 25.0%
!!! GTTTAGTTTTCATCTTCTTT+CGG + chr1_1:20191680-20191699 Msa0013050:CDS 25.0%
! AAAATTTCCTTAAGCTTATG+CGG - chr1_1:20191862-20191881 None:intergenic 25.0%
!! TGTTTTGTGATATGCTATAT+AGG + chr1_1:20192056-20192075 Msa0013050:intron 25.0%
!! TAAGCTATAAGCTCTTTTTA+TGG - chr1_1:20192097-20192116 None:intergenic 25.0%
! TAGAATAATAAGGGTAAAAC+TGG - chr1_1:20192288-20192307 None:intergenic 25.0%
! TTCGCAAAGAAAGAAAAAAT+GGG - chr1_1:20192484-20192503 None:intergenic 25.0%
! AGACATGATATAATTAGACA+TGG + chr1_1:20193008-20193027 Msa0013050:intron 25.0%
! GACATGATATAATTAGACAT+GGG + chr1_1:20193009-20193028 Msa0013050:intron 25.0%
! ACATGATATAATTAGACATG+GGG + chr1_1:20193010-20193029 Msa0013050:intron 25.0%
!! TCTACCATATTTTCTACAAA+AGG - chr1_1:20193062-20193081 None:intergenic 25.0%
!! AAGGAGAGTATATCAAATTA+AGG + chr1_1:20193127-20193146 Msa0013050:intron 25.0%
!! AGGAGAGTATATCAAATTAA+GGG + chr1_1:20193128-20193147 Msa0013050:intron 25.0%
!!! TTTTGTAGTTTGGTTTTGAT+GGG + chr1_1:20193720-20193739 Msa0013050:intron 25.0%
!!! GTTTTACCTTTTTAAGATCA+TGG + chr1_1:20193878-20193897 Msa0013050:intron 25.0%
! TATTACTACAATCAAACTTC+TGG + chr1_1:20193961-20193980 Msa0013050:intron 25.0%
! TTCTGGACAATATAATTTGA+TGG + chr1_1:20193978-20193997 Msa0013050:intron 25.0%
!! CAAATGTCAAGTGAAAATTT+TGG + chr1_1:20194071-20194090 Msa0013050:intron 25.0%
!! TTTGGAGCGTTTATAAAATT+TGG + chr1_1:20194089-20194108 Msa0013050:intron 25.0%
! TTTCCATGAATCAATGATTA+CGG + chr1_1:20194182-20194201 Msa0013050:intron 25.0%
! ACGGATAATATTATTTCACA+TGG + chr1_1:20194201-20194220 Msa0013050:intron 25.0%
! ACAATTCAGTAAAATGAGAA+TGG - chr1_1:20194229-20194248 None:intergenic 25.0%
!! ATTCTCATTTTACTGAATTG+TGG + chr1_1:20194228-20194247 Msa0013050:intron 25.0%
!! TTCTCATTTTACTGAATTGT+GGG + chr1_1:20194229-20194248 Msa0013050:intron 25.0%
!!! TAGAAAATCACTTTTTCCTT+GGG - chr1_1:20194451-20194470 None:intergenic 25.0%
!!! TTAGAAAATCACTTTTTCCT+TGG - chr1_1:20194452-20194471 None:intergenic 25.0%
!!! TTTTTTTTTGACAACTGCTA+TGG + chr1_1:20194530-20194549 Msa0013050:intron 25.0%
! TTTCGATAGAAAAGATGTTA+TGG - chr1_1:20194632-20194651 None:intergenic 25.0%
! TATTTCAACATAGTGATGAT+CGG + chr1_1:20194719-20194738 Msa0013050:intron 25.0%
!!! TTGTTTTTATAAAAAAGGGG+CGG - chr1_1:20194810-20194829 None:intergenic 25.0%
! AGTGCTAGAATTTAATCAAA+AGG - chr1_1:20194870-20194889 None:intergenic 25.0%
! ATATTGCCACTAGTTAAATT+TGG + chr1_1:20194910-20194929 Msa0013050:intron 25.0%
!!! GGAACATTTAACTTTTATGT+AGG - chr1_1:20195287-20195306 None:intergenic 25.0%
!! ATTTTTGTAATAGATGCTAG+AGG - chr1_1:20195315-20195334 None:intergenic 25.0%
!!! CTTAGATAAAAGTTCTAAAC+GGG + chr1_1:20195408-20195427 Msa0013050:intron 25.0%
! AAAGTTACTTAGAAACATCT+GGG + chr1_1:20195636-20195655 Msa0013050:intron 25.0%
!!! ATATTTGTTTTCAAGAAACC+AGG + chr1_1:20195844-20195863 Msa0013050:intron 25.0%
!! ATCCTGATTTTCTAATTAAC+TGG - chr1_1:20196117-20196136 None:intergenic 25.0%
!! GATGGACTTATTGAATATTA+AGG - chr1_1:20196261-20196280 None:intergenic 25.0%
! TAGTTATGATAGACAAAAGA+TGG - chr1_1:20196279-20196298 None:intergenic 25.0%
! AATATTGAAATCAGAACCAA+TGG - chr1_1:20196345-20196364 None:intergenic 25.0%
!!! TCATTTTGTGGTTGATATTA+TGG + chr1_1:20196465-20196484 Msa0013050:CDS 25.0%
!! CAATTTATCAAGACTTTTAC+GGG + chr1_1:20196576-20196595 Msa0013050:intron 25.0%
! TTCATTCCAAATTACATCAA+GGG - chr1_1:20196723-20196742 None:intergenic 25.0%
! TTTCATTCCAAATTACATCA+AGG - chr1_1:20196724-20196743 None:intergenic 25.0%
!! TTTTTCTCATGGTTTCTTAA+AGG + chr1_1:20196889-20196908 Msa0013050:intron 25.0%
!! TTTTCTCATGGTTTCTTAAA+GGG + chr1_1:20196890-20196909 Msa0013050:intron 25.0%
! GAGAAGATAATAGAAAAAGA+AGG - chr1_1:20197009-20197028 None:intergenic 25.0%
! TCTATTATATTAGTGGGATT+GGG - chr1_1:20197299-20197318 None:intergenic 25.0%
! TTCTATTATATTAGTGGGAT+TGG - chr1_1:20197300-20197319 None:intergenic 25.0%
! AATATAAACATGTCAGATGA+GGG - chr1_1:20197404-20197423 None:intergenic 25.0%
!!! CCTATTTCGTTTTGAAATTA+AGG - chr1_1:20197643-20197662 None:intergenic 25.0%
! CCTTAATTTCAAAACGAAAT+AGG + chr1_1:20197640-20197659 Msa0013050:intron 25.0%
! TGATAATTAAGAGCTATTAG+TGG + chr1_1:20198048-20198067 Msa0013050:intron 25.0%
! GATAATTAAGAGCTATTAGT+GGG + chr1_1:20198049-20198068 Msa0013050:intron 25.0%
! ATAATTAAGAGCTATTAGTG+GGG + chr1_1:20198050-20198069 Msa0013050:intron 25.0%
! TGTTAAGATCTTTGTAATTG+AGG + chr1_1:20198317-20198336 Msa0013050:intron 25.0%
! AATTCCTATAACCTAAACAT+GGG - chr1_1:20198478-20198497 None:intergenic 25.0%
! TAATTCCTATAACCTAAACA+TGG - chr1_1:20198479-20198498 None:intergenic 25.0%
! TAGGAATTATCTAGAGATAA+AGG + chr1_1:20198490-20198509 Msa0013050:intron 25.0%
! AGAATAGTCACTTCAAATAA+TGG + chr1_1:20198542-20198561 Msa0013050:intron 25.0%
!! AATAAGTGATGTTTCTTTTC+AGG + chr1_1:20198619-20198638 Msa0013050:intron 25.0%
! CAATTTAAAAACCAACCAAT+AGG - chr1_1:20198732-20198751 None:intergenic 25.0%
!! ATATGAAGTTTAGAATAGGA+TGG - chr1_1:20198828-20198847 None:intergenic 25.0%
! TCTAAACTTCATATATTACC+TGG + chr1_1:20198834-20198853 Msa0013050:CDS 25.0%
!!! TTTTTTTGTGTTCTCAATTG+TGG + chr1_1:20198862-20198881 Msa0013050:intron 25.0%
!! AATTAAACAGCAAGAAGTAT+TGG - chr1_1:20198899-20198918 None:intergenic 25.0%
!! ACACAGATTTATGGATTAAA+CGG - chr1_1:20199051-20199070 None:intergenic 25.0%
! TCAGTGGTTGATTATTTATT+TGG + chr1_1:20199262-20199281 Msa0013050:three_prime_UTR 25.0%
! TCTGTTATAAAAATTACCCT+TGG - chr1_1:20199302-20199321 None:intergenic 25.0%
!! GAGAAAGTTAATCTTTTCTA+TGG + chr1_1:20199320-20199339 Msa0013050:three_prime_UTR 25.0%
!! AATTTGTAGTTTGCTTGCTA+GGG - chr1_1:20191047-20191066 None:intergenic 30.0%
TAAGATTGAATAGGATGAGA+AGG - chr1_1:20191330-20191349 None:intergenic 30.0%
TTCTCATCCTATTCAATCTT+AGG + chr1_1:20191329-20191348 Msa0013050:intron 30.0%
TCTCATCCTATTCAATCTTA+GGG + chr1_1:20191330-20191349 Msa0013050:intron 30.0%
AATTGAGTTACGAATGCATA+GGG - chr1_1:20191361-20191380 None:intergenic 30.0%
TAATTGAGTTACGAATGCAT+AGG - chr1_1:20191362-20191381 None:intergenic 30.0%
TATATCACATAAAACCCCAT+AGG - chr1_1:20191833-20191852 None:intergenic 30.0%
TTTATCGTAGAACCTTAAGA+TGG + chr1_1:20191880-20191899 Msa0013050:intron 30.0%
TTATCGTAGAACCTTAAGAT+GGG + chr1_1:20191881-20191900 Msa0013050:intron 30.0%
AGCATATCACAAAACATTAG+CGG - chr1_1:20192052-20192071 None:intergenic 30.0%
AAAGAGCTTATAGCTTATAG+CGG + chr1_1:20192100-20192119 Msa0013050:intron 30.0%
AAAAATAGCTTATAAGCTCG+TGG - chr1_1:20192208-20192227 None:intergenic 30.0%
GAGAATATTAAGGGCAAAAA+TGG - chr1_1:20192319-20192338 None:intergenic 30.0%
GAAAATAATTGGGATTGAGT+GGG - chr1_1:20192414-20192433 None:intergenic 30.0%
TGAAAATAATTGGGATTGAG+TGG - chr1_1:20192415-20192434 None:intergenic 30.0%
GTGTGACACTGAAAATAATT+GGG - chr1_1:20192424-20192443 None:intergenic 30.0%
TGTGTGACACTGAAAATAAT+TGG - chr1_1:20192425-20192444 None:intergenic 30.0%
GTTCGCAAAGAAAGAAAAAA+TGG - chr1_1:20192485-20192504 None:intergenic 30.0%
! GAAGTGTTTGGTAAAAATAG+CGG - chr1_1:20192752-20192771 None:intergenic 30.0%
TTTGACAACACATTGTACTA+TGG - chr1_1:20192893-20192912 None:intergenic 30.0%
TAGTACAATGTGTTGTCAAA+TGG + chr1_1:20192893-20192912 Msa0013050:intron 30.0%
! ACCACCTTTTGTAGAAAATA+TGG + chr1_1:20193055-20193074 Msa0013050:intron 30.0%
! ACCATATTTTCTACAAAAGG+TGG - chr1_1:20193059-20193078 None:intergenic 30.0%
AATATGGTAGAAACATAGCT+TGG + chr1_1:20193071-20193090 Msa0013050:intron 30.0%
ATATGGTAGAAACATAGCTT+GGG + chr1_1:20193072-20193091 Msa0013050:intron 30.0%
AGATCTCAAGATTAATGAGT+TGG + chr1_1:20193211-20193230 Msa0013050:intron 30.0%
GTAAAGAACAGGGTTTAATA+TGG + chr1_1:20193499-20193518 Msa0013050:intron 30.0%
GATTTATTACCAGGTAAGTT+TGG + chr1_1:20193648-20193667 Msa0013050:intron 30.0%
! TCTGTTTTCTTCTTTTGTCT+TGG + chr1_1:20193693-20193712 Msa0013050:intron 30.0%
!!! GTTTTGTAGTTTGGTTTTGA+TGG + chr1_1:20193719-20193738 Msa0013050:intron 30.0%
CAACATCCATGATCTTAAAA+AGG - chr1_1:20193887-20193906 None:intergenic 30.0%
AGCATGTCTAGTAATATGTT+CGG + chr1_1:20194006-20194025 Msa0013050:intron 30.0%
TGGATTGATATGGAATAGTT+TGG + chr1_1:20194136-20194155 Msa0013050:intron 30.0%
!! TATCCGTAATCATTGATTCA+TGG - chr1_1:20194188-20194207 None:intergenic 30.0%
! TCTCATTTTACTGAATTGTG+GGG + chr1_1:20194230-20194249 Msa0013050:intron 30.0%
CAATAATTAAAACCTTGCTG+AGG + chr1_1:20194267-20194286 Msa0013050:intron 30.0%
GTAATGTTAGAATCCTCAAA+TGG - chr1_1:20194354-20194373 None:intergenic 30.0%
TATGGACATGAAGAGTTTAA+AGG - chr1_1:20194408-20194427 None:intergenic 30.0%
!!! AGTCATTATTTTTTGTCCCA+AGG + chr1_1:20194432-20194451 Msa0013050:intron 30.0%
TCTAAACAAAGATCTTACAC+TGG + chr1_1:20194467-20194486 Msa0013050:intron 30.0%
TAGAAAAGATGTTATGGTTG+TGG - chr1_1:20194626-20194645 None:intergenic 30.0%
ATCTAGCCAAATTTAACTAG+TGG - chr1_1:20194919-20194938 None:intergenic 30.0%
!! AAGCTTTTTCTAACAAAGCT+AGG + chr1_1:20195009-20195028 Msa0013050:intron 30.0%
AAGATAAAGTGACAACATAC+AGG - chr1_1:20195082-20195101 None:intergenic 30.0%
!! GTATGTTGTCACTTTATCTT+TGG + chr1_1:20195082-20195101 Msa0013050:intron 30.0%
! AAGTTTCACGTGTTTAGTTT+GGG - chr1_1:20195380-20195399 None:intergenic 30.0%
TAAGTTTCACGTGTTTAGTT+TGG - chr1_1:20195381-20195400 None:intergenic 30.0%
GAAAGTTACTTAGAAACATC+TGG + chr1_1:20195635-20195654 Msa0013050:intron 30.0%
AGAAGTTTAATCCTAAGAGA+GGG + chr1_1:20195710-20195729 Msa0013050:intron 30.0%
! TCACTAAGCCTATTAATTTG+TGG - chr1_1:20195757-20195776 None:intergenic 30.0%
TGCCAGTTAATTAGAAAATC+AGG + chr1_1:20196112-20196131 Msa0013050:intron 30.0%
TTAAAGATATCAAATCTGCG+CGG + chr1_1:20196180-20196199 Msa0013050:intron 30.0%
TTTATACAGACATCATGTGT+TGG - chr1_1:20196306-20196325 None:intergenic 30.0%
! ATGTATGTCAGATCATTTTG+TGG + chr1_1:20196453-20196472 Msa0013050:intron 30.0%
!! TTTTGTGGTTGATATTATGG+TGG + chr1_1:20196468-20196487 Msa0013050:CDS 30.0%
TCATTCCAAATTACATCAAG+GGG - chr1_1:20196722-20196741 None:intergenic 30.0%
GAATGAAACTTATTGCATCT+AGG + chr1_1:20196736-20196755 Msa0013050:intron 30.0%
CAAGATACCAATCACATATT+AGG + chr1_1:20196762-20196781 Msa0013050:intron 30.0%
! CCTTGGAAGTTTATTTGTTA+CGG + chr1_1:20196796-20196815 Msa0013050:intron 30.0%
ATCAGTGATACTACAAAAGT+GGG - chr1_1:20197148-20197167 None:intergenic 30.0%
AATCAGTGATACTACAAAAG+TGG - chr1_1:20197149-20197168 None:intergenic 30.0%
GAATATAAACATGTCAGATG+AGG - chr1_1:20197405-20197424 None:intergenic 30.0%
! GACTAAGGAGAGAATAATTT+TGG - chr1_1:20197499-20197518 None:intergenic 30.0%
!! TATTTGGATTTTGAGGACTA+AGG - chr1_1:20197514-20197533 None:intergenic 30.0%
! TGCATTGTATTTGGATTTTG+AGG - chr1_1:20197521-20197540 None:intergenic 30.0%
! GTGGATTTTTGCATTGTATT+TGG - chr1_1:20197530-20197549 None:intergenic 30.0%
ATATCAGGTGTCTATTATTC+TGG - chr1_1:20197759-20197778 None:intergenic 30.0%
ATAATAGACACCTGATATTG+TGG + chr1_1:20197761-20197780 Msa0013050:intron 30.0%
TTATTTGGGTAAGAGTTCTT+TGG + chr1_1:20198021-20198040 Msa0013050:intron 30.0%
ATTTCACCAGTTTCCTTATA+GGG - chr1_1:20198114-20198133 None:intergenic 30.0%
!!! TCGTGTTTTTGGTATATTAG+CGG + chr1_1:20198291-20198310 Msa0013050:intron 30.0%
GAAATTTACATTACTGTCAC+TGG - chr1_1:20198363-20198382 None:intergenic 30.0%
GAATTATCTAGAGATAAAGG+AGG + chr1_1:20198493-20198512 Msa0013050:intron 30.0%
!! TTTCCTTATCAGAAGTGTTA+TGG + chr1_1:20198673-20198692 Msa0013050:CDS 30.0%
! CAAAATTGATTCCTATTGGT+TGG + chr1_1:20198718-20198737 Msa0013050:intron 30.0%
ACTTCATATATTACCTGGTA+AGG + chr1_1:20198839-20198858 Msa0013050:intron 30.0%
TATCCTAACTAGATCCAAAA+GGG - chr1_1:20198946-20198965 None:intergenic 30.0%
ATATCCTAACTAGATCCAAA+AGG - chr1_1:20198947-20198966 None:intergenic 30.0%
TTTGGATCTAGTTAGGATAT+TGG + chr1_1:20198947-20198966 Msa0013050:intron 30.0%
TTGGATCTAGTTAGGATATT+GGG + chr1_1:20198948-20198967 Msa0013050:intron 30.0%
GGAAATATTACCTTCTTCTT+TGG + chr1_1:20199143-20199162 Msa0013050:CDS 30.0%
! TTTCAATCTTTTCAGCGAAT+CGG - chr1_1:20199222-20199241 None:intergenic 30.0%
GATTGAAAATACCGAGAAAA+AGG + chr1_1:20199234-20199253 Msa0013050:three_prime_UTR 30.0%
!! ATTTGTAGTTTGCTTGCTAG+GGG - chr1_1:20191046-20191065 None:intergenic 35.0%
!! GAATTTGTAGTTTGCTTGCT+AGG - chr1_1:20191048-20191067 None:intergenic 35.0%
GAAGAACCCTAAGATTGAAT+AGG - chr1_1:20191339-20191358 None:intergenic 35.0%
CAATTGAGAGTTCCAGAATA+TGG + chr1_1:20191480-20191499 Msa0013050:CDS 35.0%
GAGAAAATGAAACACCTTCT+GGG - chr1_1:20191514-20191533 None:intergenic 35.0%
TGAGAAAATGAAACACCTTC+TGG - chr1_1:20191515-20191534 None:intergenic 35.0%
TCAATGATGTATAGTACCTC+TGG - chr1_1:20191724-20191743 None:intergenic 35.0%
GCATTTCTTTGAGTGTACTT+TGG + chr1_1:20191773-20191792 Msa0013050:intron 35.0%
!!! TGTACTTTGGTTTTGAACTC+CGG + chr1_1:20191786-20191805 Msa0013050:intron 35.0%
!! AAAAGTACCGCATAAGCTTA+AGG + chr1_1:20191852-20191871 Msa0013050:intron 35.0%
TATGCTATATAGGCTGTGTT+TGG + chr1_1:20192066-20192085 Msa0013050:intron 35.0%
TATATAGGCTGTGTTTGGTA+AGG + chr1_1:20192071-20192090 Msa0013050:intron 35.0%
CTGACAAAATAAGCTCTGTT+TGG + chr1_1:20192140-20192159 Msa0013050:intron 35.0%
TCTCTTTCATTTCACGTTTC+TGG + chr1_1:20192335-20192354 Msa0013050:intron 35.0%
CTCTTTCATTTCACGTTTCT+GGG + chr1_1:20192336-20192355 Msa0013050:intron 35.0%
AATGCTAGAAGATGATGAAG+AGG - chr1_1:20192550-20192569 None:intergenic 35.0%
!! ATCATCTTCTAGCATTGACA+AGG + chr1_1:20192554-20192573 Msa0013050:intron 35.0%
!! TCATCTTCTAGCATTGACAA+GGG + chr1_1:20192555-20192574 Msa0013050:intron 35.0%
! GATAAGCTAGTTGAAGTGTT+TGG - chr1_1:20192764-20192783 None:intergenic 35.0%
GCTCTGTTTGGTAAAAATAG+CGG - chr1_1:20192871-20192890 None:intergenic 35.0%
TACAATGTGTTGTCAAATGG+TGG + chr1_1:20192896-20192915 Msa0013050:intron 35.0%
! GAGAAGACCTATAGATTTTG+TGG + chr1_1:20193103-20193122 Msa0013050:intron 35.0%
! GACCTATAGATTTTGTGGTA+AGG + chr1_1:20193108-20193127 Msa0013050:intron 35.0%
CTCCTTACCACAAAATCTAT+AGG - chr1_1:20193113-20193132 None:intergenic 35.0%
AAGGGTAGTCAAATCACTAA+AGG + chr1_1:20193146-20193165 Msa0013050:intron 35.0%
GCACATCAAGTAAGATATGT+TGG - chr1_1:20193576-20193595 None:intergenic 35.0%
GTTGTAAAGAAAGCAAGACT+TGG - chr1_1:20193598-20193617 None:intergenic 35.0%
TTACCAGGTAAGTTTGGTAT+TGG + chr1_1:20193654-20193673 Msa0013050:intron 35.0%
!! TCTTGGTGTGTTTTGTAGTT+TGG + chr1_1:20193710-20193729 Msa0013050:intron 35.0%
TGCAAAAACATTTAGCACAG+AGG - chr1_1:20193756-20193775 None:intergenic 35.0%
!! TCTGTGCTAAATGTTTTTGC+AGG + chr1_1:20193755-20193774 Msa0013050:intron 35.0%
ATATGGAATAGTTTGGCACT+AGG + chr1_1:20194143-20194162 Msa0013050:intron 35.0%
! CTCATTTTACTGAATTGTGG+GGG + chr1_1:20194231-20194250 Msa0013050:intron 35.0%
AAATGTTAGAATCCTCAGCA+AGG - chr1_1:20194282-20194301 None:intergenic 35.0%
CTCAAATGGATAAATGCAGT+TGG - chr1_1:20194340-20194359 None:intergenic 35.0%
CAACTGCATTTATCCATTTG+AGG + chr1_1:20194338-20194357 Msa0013050:intron 35.0%
AAAGATGTTATGGTTGTGGA+TGG - chr1_1:20194622-20194641 None:intergenic 35.0%
GCTGTCATTGCGTTATTTAA+AGG - chr1_1:20194668-20194687 None:intergenic 35.0%
GATCTTGCAATGAACAGTAT+TGG - chr1_1:20194944-20194963 None:intergenic 35.0%
!! GTAACTTGTTAAATGGAAGG+AGG - chr1_1:20195132-20195151 None:intergenic 35.0%
!! GGAGTAACTTGTTAAATGGA+AGG - chr1_1:20195135-20195154 None:intergenic 35.0%
CATTTAACAAGTTACTCCCA+CGG + chr1_1:20195137-20195156 Msa0013050:intron 35.0%
AATGATGAAGCTATAACCGT+GGG - chr1_1:20195156-20195175 None:intergenic 35.0%
TAATGATGAAGCTATAACCG+TGG - chr1_1:20195157-20195176 None:intergenic 35.0%
ACAGTATATTGATCTTGAGC+TGG - chr1_1:20195455-20195474 None:intergenic 35.0%
GTACACCACCTTAAAATTCA+AGG - chr1_1:20195558-20195577 None:intergenic 35.0%
TTACTTAGAAACATCTGGGA+AGG + chr1_1:20195640-20195659 Msa0013050:intron 35.0%
GAGAAGTTTAATCCTAAGAG+AGG + chr1_1:20195709-20195728 Msa0013050:intron 35.0%
GACGGTTTCCACAAATTAAT+AGG + chr1_1:20195746-20195765 Msa0013050:intron 35.0%
TTCGTTATAAGCACGTGAAA+GGG - chr1_1:20195800-20195819 None:intergenic 35.0%
TTTCGTTATAAGCACGTGAA+AGG - chr1_1:20195801-20195820 None:intergenic 35.0%
GCAAAGAATCGTAATTTGGT+GGG - chr1_1:20195972-20195991 None:intergenic 35.0%
TGCAAAGAATCGTAATTTGG+TGG - chr1_1:20195973-20195992 None:intergenic 35.0%
GCATGCAAAGAATCGTAATT+TGG - chr1_1:20195976-20195995 None:intergenic 35.0%
ATTACGATTCTTTGCATGCA+CGG + chr1_1:20195977-20195996 Msa0013050:intron 35.0%
! TCAGGATCTGTTGTTTGTTA+AGG + chr1_1:20196130-20196149 Msa0013050:intron 35.0%
! CAGGATCTGTTGTTTGTTAA+GGG + chr1_1:20196131-20196150 Msa0013050:intron 35.0%
! AGGACATAACTGATAACGAT+AGG - chr1_1:20196208-20196227 None:intergenic 35.0%
AGAGATAAGTTTGAGTCTTG+AGG - chr1_1:20196228-20196247 None:intergenic 35.0%
AAAAGAATCTTGTGTGCCAT+TGG + chr1_1:20196326-20196345 Msa0013050:intron 35.0%
! CGGGTTTTTGCTAAGTAATA+TGG + chr1_1:20196595-20196614 Msa0013050:intron 35.0%
CCGTAACAAATAAACTTCCA+AGG - chr1_1:20196799-20196818 None:intergenic 35.0%
! AGTTTATTTGTTACGGCCTT+AGG + chr1_1:20196803-20196822 Msa0013050:intron 35.0%
! GTTTATTTGTTACGGCCTTA+GGG + chr1_1:20196804-20196823 Msa0013050:intron 35.0%
! TTTATTTGTTACGGCCTTAG+GGG + chr1_1:20196805-20196824 Msa0013050:intron 35.0%
!! TTCTGTTAGAGTACTGGTAT+TGG + chr1_1:20196833-20196852 Msa0013050:intron 35.0%
AACCATGAGAAAAACATTCG+AGG - chr1_1:20196883-20196902 None:intergenic 35.0%
AGTCTACACAAAACCAGATA+GGG - chr1_1:20197173-20197192 None:intergenic 35.0%
TAGTCTACACAAAACCAGAT+AGG - chr1_1:20197174-20197193 None:intergenic 35.0%
CTATCTGCAGTCCAAATAAT+CGG + chr1_1:20197333-20197352 Msa0013050:intron 35.0%
!! TGCAATGTGTACCGATTATT+TGG - chr1_1:20197347-20197366 None:intergenic 35.0%
ATGTCAGATGAGGGTAATTT+AGG - chr1_1:20197395-20197414 None:intergenic 35.0%
TATTTGTATACCACAAGCTG+TGG - chr1_1:20197549-20197568 None:intergenic 35.0%
TATCAACGATCCACAATATC+AGG - chr1_1:20197774-20197793 None:intergenic 35.0%
!! TGATCTTCTAGTTTCACAGT+CGG + chr1_1:20197931-20197950 Msa0013050:intron 35.0%
TTCACAGTTCACTTAATGGT+TGG - chr1_1:20197961-20197980 None:intergenic 35.0%
AACCATTAAGTGAACTGTGA+AGG + chr1_1:20197960-20197979 Msa0013050:intron 35.0%
TGTTGGAATAGGTAATTGAG+TGG + chr1_1:20198073-20198092 Msa0013050:intron 35.0%
TTTCACCAGTTTCCTTATAG+GGG - chr1_1:20198113-20198132 None:intergenic 35.0%
GATTTCACCAGTTTCCTTAT+AGG - chr1_1:20198115-20198134 None:intergenic 35.0%
TAATTAGGCTAAATCCCTAG+TGG - chr1_1:20198144-20198163 None:intergenic 35.0%
ATGATCCAACTCAATCTCAA+AGG - chr1_1:20198207-20198226 None:intergenic 35.0%
! GGTATCAGAGCTTATCTTTT+TGG + chr1_1:20198241-20198260 Msa0013050:intron 35.0%
TTAGAGTGTGTACAAATGAG+TGG - chr1_1:20198268-20198287 None:intergenic 35.0%
! CACTCTAAATGTCGTGTTTT+TGG + chr1_1:20198280-20198299 Msa0013050:intron 35.0%
!!! CGTGTTTTTGGTATATTAGC+GGG + chr1_1:20198292-20198311 Msa0013050:intron 35.0%
GAGATATATAGCCTAGATCA+CGG - chr1_1:20198399-20198418 None:intergenic 35.0%
GGCAAGACAAGATATATAGA+AGG + chr1_1:20198437-20198456 Msa0013050:intron 35.0%
!! GCTATTTTCTTCCCATGTTT+AGG + chr1_1:20198464-20198483 Msa0013050:intron 35.0%
! TCTTCCCATGTTTAGGTTAT+AGG + chr1_1:20198471-20198490 Msa0013050:intron 35.0%
!!! AGTGATGTTTCTTTTCAGGT+TGG + chr1_1:20198623-20198642 Msa0013050:intron 35.0%
TCACCATAACACTTCTGATA+AGG - chr1_1:20198679-20198698 None:intergenic 35.0%
AAATGCGAACCTTAATGTGA+TGG + chr1_1:20198801-20198820 Msa0013050:CDS 35.0%
GAACACAAAAAAACCTTACC+AGG - chr1_1:20198855-20198874 None:intergenic 35.0%
ATCCTAACTAGATCCAAAAG+GGG - chr1_1:20198945-20198964 None:intergenic 35.0%
TCCATAAATCTGTGTTTGTG+TGG + chr1_1:20199056-20199075 Msa0013050:intron 35.0%
AAAAGGGTAAGAGGAATAGT+GGG - chr1_1:20199102-20199121 None:intergenic 35.0%
AAATGTGTGAAAAGGGTAAG+AGG - chr1_1:20199111-20199130 None:intergenic 35.0%
CTGCAACAAATGTGTGAAAA+GGG - chr1_1:20199118-20199137 None:intergenic 35.0%
ACTGCAACAAATGTGTGAAA+AGG - chr1_1:20199119-20199138 None:intergenic 35.0%
! TTTCACACATTTGTTGCAGT+TGG + chr1_1:20199119-20199138 Msa0013050:intron 35.0%
ATGAACAAGACCAAAGAAGA+AGG - chr1_1:20199156-20199175 None:intergenic 35.0%
!!! CTTTGGTCTTGTTCATTTTG+AGG + chr1_1:20199160-20199179 Msa0013050:CDS 35.0%
! TTCAATCTTTTCAGCGAATC+GGG - chr1_1:20199221-20199240 None:intergenic 35.0%
!! ATGAGAAGGTACCAAAGCTA+TGG - chr1_1:20191316-20191335 None:intergenic 40.0%
TGAGAGTTCCAGAATATGGT+TGG + chr1_1:20191484-20191503 Msa0013050:CDS 40.0%
! CTCAATTTTGTGGTGAATGC+AGG + chr1_1:20191531-20191550 Msa0013050:CDS 40.0%
TCTTCTTTCGGAATGTACAG+AGG + chr1_1:20191692-20191711 Msa0013050:CDS 40.0%
!!! GTACTTTGGTTTTGAACTCC+GGG + chr1_1:20191787-20191806 Msa0013050:intron 40.0%
!!! TACTTTGGTTTTGAACTCCG+GGG + chr1_1:20191788-20191807 Msa0013050:intron 40.0%
TGCTGTATGAGATAGAGTGT+TGG + chr1_1:20191907-20191926 Msa0013050:intron 40.0%
! GCTGTATGAGATAGAGTGTT+GGG + chr1_1:20191908-20191927 Msa0013050:intron 40.0%
CCAACGCAACATTCTAATCT+CGG - chr1_1:20191970-20191989 None:intergenic 40.0%
AGTCCAGTGTTGTCAAATAG+CGG + chr1_1:20192000-20192019 Msa0013050:intron 40.0%
CTATAAGCTCAAACGCTACT+TGG - chr1_1:20192242-20192261 None:intergenic 40.0%
AATAATTGGGATTGAGTGGG+TGG - chr1_1:20192411-20192430 None:intergenic 40.0%
! CATTGTACTATGGCTCTGTT+TGG - chr1_1:20192883-20192902 None:intergenic 40.0%
TTACCCAATGTTGTCAACCA+CGG - chr1_1:20192984-20193003 None:intergenic 40.0%
ATTAGACATGGGGACATTAG+AGG + chr1_1:20193020-20193039 Msa0013050:intron 40.0%
TTAGACATGGGGACATTAGA+GGG + chr1_1:20193021-20193040 Msa0013050:intron 40.0%
CTTATCATACTAAGTGGAGC+TGG - chr1_1:20193288-20193307 None:intergenic 40.0%
CAGCTCCACTTAGTATGATA+AGG + chr1_1:20193286-20193305 Msa0013050:intron 40.0%
! CCAAGCCTTATCATACTAAG+TGG - chr1_1:20193294-20193313 None:intergenic 40.0%
CCACTTAGTATGATAAGGCT+TGG + chr1_1:20193291-20193310 Msa0013050:intron 40.0%
CTTTACAACATATGCACTCC+TGG + chr1_1:20193609-20193628 Msa0013050:CDS 40.0%
ACTCCAATACCAAACTTACC+TGG - chr1_1:20193660-20193679 None:intergenic 40.0%
TGTTGTGGTTTATGCTGTTC+AGG + chr1_1:20193827-20193846 Msa0013050:CDS 40.0%
! CACACAGCTCGATTCATTTT+TGG + chr1_1:20193907-20193926 Msa0013050:intron 40.0%
TGGATGCAACAGCGTTTATT+TGG + chr1_1:20194109-20194128 Msa0013050:intron 40.0%
ATTTGGCGACTGGATTGATA+TGG + chr1_1:20194126-20194145 Msa0013050:intron 40.0%
! GCAGCAGTTTTACTTTCACT+AGG - chr1_1:20194747-20194766 None:intergenic 40.0%
!! TGCTGCTTTAAGTGCAAAAC+TGG + chr1_1:20194761-20194780 Msa0013050:intron 40.0%
! GCTTTAAGTGCAAAACTGGA+TGG + chr1_1:20194765-20194784 Msa0013050:intron 40.0%
AGTGGCAATATGCAATCATC+AGG - chr1_1:20194901-20194920 None:intergenic 40.0%
GATCATGATTGTAGAGACAG+AGG + chr1_1:20194960-20194979 Msa0013050:intron 40.0%
!! CGTGGGAGTAACTTGTTAAA+TGG - chr1_1:20195139-20195158 None:intergenic 40.0%
TAATAGATGCTAGAGGTGAC+TGG - chr1_1:20195308-20195327 None:intergenic 40.0%
GGAATTACGTACAAGTTGTG+TGG - chr1_1:20195359-20195378 None:intergenic 40.0%
CAAACTATGGTACTGTCTAC+AGG + chr1_1:20195478-20195497 Msa0013050:intron 40.0%
! CTCCACCACCTTGAATTTTA+AGG + chr1_1:20195547-20195566 Msa0013050:intron 40.0%
CACCTTAAAATTCAAGGTGG+TGG - chr1_1:20195552-20195571 None:intergenic 40.0%
!! CACCACCTTGAATTTTAAGG+TGG + chr1_1:20195550-20195569 Msa0013050:intron 40.0%
CACCACCTTAAAATTCAAGG+TGG - chr1_1:20195555-20195574 None:intergenic 40.0%
TTAATCCTAAGAGAGGGAGT+AGG + chr1_1:20195716-20195735 Msa0013050:intron 40.0%
TCGTTATAAGCACGTGAAAG+GGG - chr1_1:20195799-20195818 None:intergenic 40.0%
ATAACAGCTGTTCACAGATC+AGG - chr1_1:20195877-20195896 None:intergenic 40.0%
! GAAGAGTACAGTCAAGATCA+TGG - chr1_1:20196063-20196082 None:intergenic 40.0%
TAAGGGTCTGTTAACAGTTC+AGG + chr1_1:20196148-20196167 Msa0013050:intron 40.0%
CGTACTAGTCATTCTGTCAA+AGG + chr1_1:20196502-20196521 Msa0013050:CDS 40.0%
TGGTATACATGTTGCAACAG+CGG + chr1_1:20196615-20196634 Msa0013050:intron 40.0%
CAACTCCCCTTGATGTAATT+TGG + chr1_1:20196714-20196733 Msa0013050:intron 40.0%
GCATGAGCCTAATATGTGAT+TGG - chr1_1:20196772-20196791 None:intergenic 40.0%
GCACATTTCTGTTAGAGTAC+TGG + chr1_1:20196827-20196846 Msa0013050:intron 40.0%
! GTCCTCGAATGTTTTTCTCA+TGG + chr1_1:20196878-20196897 Msa0013050:intron 40.0%
!! GTATCACTGATTTCCCTATC+TGG + chr1_1:20197157-20197176 Msa0013050:intron 40.0%
GCTTTCCTGTTGAATCCAAA+GGG + chr1_1:20197210-20197229 Msa0013050:CDS 40.0%
ATGCAAAAATCCACAGCTTG+TGG + chr1_1:20197536-20197555 Msa0013050:intron 40.0%
TAATAACTGCCACCATAGCA+GGG + chr1_1:20197821-20197840 Msa0013050:intron 40.0%
CCTCTTGCTAATAGAAGGTA+AGG - chr1_1:20197889-20197908 None:intergenic 40.0%
CCTTACCTTCTATTAGCAAG+AGG + chr1_1:20197886-20197905 Msa0013050:intron 40.0%
ATCGACCTCTTGCTAATAGA+AGG - chr1_1:20197894-20197913 None:intergenic 40.0%
AGCCTTCACAGTTCACTTAA+TGG - chr1_1:20197965-20197984 None:intergenic 40.0%
!! TATTAGTGGGGTGTTGGAAT+AGG + chr1_1:20198062-20198081 Msa0013050:intron 40.0%
TTCACCAGTTTCCTTATAGG+GGG - chr1_1:20198112-20198131 None:intergenic 40.0%
GTGAAATCACACATCCACTA+GGG + chr1_1:20198127-20198146 Msa0013050:intron 40.0%
TAGCCTAATTAGTCCTTCCA+AGG + chr1_1:20198153-20198172 Msa0013050:intron 40.0%
AGCCTAATTAGTCCTTCCAA+GGG + chr1_1:20198154-20198173 Msa0013050:intron 40.0%
AACCCTTGGAAGGACTAATT+AGG - chr1_1:20198159-20198178 None:intergenic 40.0%
AGAAATTCTCAACCCTTGGA+AGG - chr1_1:20198169-20198188 None:intergenic 40.0%
GGATCATGCAGATTCTTAGA+TGG + chr1_1:20198220-20198239 Msa0013050:intron 40.0%
ACTGGAGTATGTAGAAATGC+GGG - chr1_1:20198345-20198364 None:intergenic 40.0%
CACTGGAGTATGTAGAAATG+CGG - chr1_1:20198346-20198365 None:intergenic 40.0%
CTCATCACACAACAGAATAG+TGG + chr1_1:20198416-20198435 Msa0013050:intron 40.0%
TAGGATGGTCCATCACATTA+AGG - chr1_1:20198813-20198832 None:intergenic 40.0%
TCTAGTTAGGATATTGGGTG+TGG + chr1_1:20198953-20198972 Msa0013050:intron 40.0%
CTAGTTAGGATATTGGGTGT+GGG + chr1_1:20198954-20198973 Msa0013050:intron 40.0%
GCCACACAAACACAGATTTA+TGG - chr1_1:20199060-20199079 None:intergenic 40.0%
GAAAAGGGTAAGAGGAATAG+TGG - chr1_1:20199103-20199122 None:intergenic 40.0%
TATTGTGTGATACCACGCTT+TGG - chr1_1:20199195-20199214 None:intergenic 40.0%
!! CACTGATTGCTCCTTTTTCT+CGG - chr1_1:20199248-20199267 None:intergenic 40.0%
!! GAGGTGTTGTTGGTCATTGT+GGG - chr1_1:20191144-20191163 None:intergenic 45.0%
!! AGAAGGTACCAAAGCTATGG+CGG - chr1_1:20191313-20191332 None:intergenic 45.0%
TGGGTAGTCCAACCATATTC+TGG - chr1_1:20191495-20191514 None:intergenic 45.0%
ATATGGTTGGACTACCCAGA+AGG + chr1_1:20191497-20191516 Msa0013050:CDS 45.0%
ATACAGCATCGCCCATCTTA+AGG - chr1_1:20191895-20191914 None:intergenic 45.0%
CCGAGATTAGAATGTTGCGT+TGG + chr1_1:20191967-20191986 Msa0013050:intron 45.0%
AGAATGTTGCGTTGGATGTG+TGG + chr1_1:20191975-20191994 Msa0013050:intron 45.0%
TAGCCGCTATTTGACAACAC+TGG - chr1_1:20192006-20192025 None:intergenic 45.0%
CCAACACACACGTTCTTCTT+TGG - chr1_1:20192641-20192660 None:intergenic 45.0%
CCAAAGAAGAACGTGTGTGT+TGG + chr1_1:20192638-20192657 Msa0013050:intron 45.0%
GCTGTAGCACTGTTACATAG+CGG + chr1_1:20192929-20192948 Msa0013050:intron 45.0%
ATGTTGTCAACCACGGATCA+CGG - chr1_1:20192977-20192996 None:intergenic 45.0%
TGATCCGTGGTTGACAACAT+TGG + chr1_1:20192977-20192996 Msa0013050:intron 45.0%
GATCCGTGGTTGACAACATT+GGG + chr1_1:20192978-20192997 Msa0013050:intron 45.0%
GGGACATTAGAGGGAAAGTT+GGG + chr1_1:20193030-20193049 Msa0013050:intron 45.0%
GGACATTAGAGGGAAAGTTG+GGG + chr1_1:20193031-20193050 Msa0013050:intron 45.0%
CTGGGCTGAGATTTATTACC+AGG + chr1_1:20193639-20193658 Msa0013050:CDS 45.0%
AACAGCGTTTATTTGGCGAC+TGG + chr1_1:20194116-20194135 Msa0013050:intron 45.0%
ACTGAATTGTGGGGGACATT+TGG + chr1_1:20194239-20194258 Msa0013050:intron 45.0%
TGGTCACTGTTGTCAAGTAG+AGG + chr1_1:20194487-20194506 Msa0013050:intron 45.0%
AGGCGCTTAATGATGAGCAA+AGG - chr1_1:20195055-20195074 None:intergenic 45.0%
AGTGACAACATACAGGACAC+AGG - chr1_1:20195075-20195094 None:intergenic 45.0%
GATACAGCTGGAGAGAGTTA+CGG - chr1_1:20195220-20195239 None:intergenic 45.0%
TCCAGCTGTATCTTGCAGTT+TGG + chr1_1:20195228-20195247 Msa0013050:intron 45.0%
ACCAAACTGCAAGATACAGC+TGG - chr1_1:20195232-20195251 None:intergenic 45.0%
TACGTACAAGTTGTGTGGCA+AGG - chr1_1:20195354-20195373 None:intergenic 45.0%
TGGTCACACACAGTGTCTAT+AGG - chr1_1:20195517-20195536 None:intergenic 45.0%
CATATCCTACTCCCTCTCTT+AGG - chr1_1:20195724-20195743 None:intergenic 45.0%
AAGAGAGGGAGTAGGATATG+TGG + chr1_1:20195724-20195743 Msa0013050:intron 45.0%
CGTTATAAGCACGTGAAAGG+GGG - chr1_1:20195798-20195817 None:intergenic 45.0%
!! ACACAGTTCTCCTGGTTCTA+CGG + chr1_1:20195926-20195945 Msa0013050:intron 45.0%
! TCGTAATTTGGTGGGAAGCT+GGG - chr1_1:20195964-20195983 None:intergenic 45.0%
! ATCGTAATTTGGTGGGAAGC+TGG - chr1_1:20195965-20195984 None:intergenic 45.0%
AATCGTGCGATTCTGTGAAC+AGG - chr1_1:20196013-20196032 None:intergenic 45.0%
AGAATGACTAGTACGCTGAC+TGG - chr1_1:20196497-20196516 None:intergenic 45.0%
!! CTGTCAAAGGTGTTCTTTGC+AGG + chr1_1:20196515-20196534 Msa0013050:CDS 45.0%
! GTTTCTTTGTTTGCTGCCCT+TGG + chr1_1:20196637-20196656 Msa0013050:CDS 45.0%
ACCGTAGAGAAGAAAGCCAA+GGG - chr1_1:20196656-20196675 None:intergenic 45.0%
ATTAGGCTCATGCAAGTCCT+TGG + chr1_1:20196779-20196798 Msa0013050:intron 45.0%
CTAACAGAAATGTGCCCCTA+AGG - chr1_1:20196822-20196841 None:intergenic 45.0%
CGCTTTCCTGTTGAATCCAA+AGG + chr1_1:20197209-20197228 Msa0013050:CDS 45.0%
! CAAGAGGTATGCAATCTGAC+AGG + chr1_1:20197248-20197267 Msa0013050:intron 45.0%
GTAATAACTGCCACCATAGC+AGG + chr1_1:20197820-20197839 Msa0013050:intron 45.0%
AAGAGCTATTAGTGGGGTGT+TGG + chr1_1:20198056-20198075 Msa0013050:intron 45.0%
GGTGAAATCACACATCCACT+AGG + chr1_1:20198126-20198145 Msa0013050:intron 45.0%
! AATCTCAAAGGCTAGCTCAG+GGG - chr1_1:20198195-20198214 None:intergenic 45.0%
! CAATCTCAAAGGCTAGCTCA+GGG - chr1_1:20198196-20198215 None:intergenic 45.0%
! TCAATCTCAAAGGCTAGCTC+AGG - chr1_1:20198197-20198216 None:intergenic 45.0%
!! GCTAGCCTTTGAGATTGAGT+TGG + chr1_1:20198199-20198218 Msa0013050:intron 45.0%
ATAAAGGAGGAGAGAGAGAG+TGG + chr1_1:20198506-20198525 Msa0013050:intron 45.0%
!! GTAAGATTGGTGACCCCTTT+TGG + chr1_1:20198929-20198948 Msa0013050:intron 45.0%
! GACCCCTTTTGGATCTAGTT+AGG + chr1_1:20198940-20198959 Msa0013050:intron 45.0%
ATCTCAGTTGGTTACCAAGG+GGG - chr1_1:20199011-20199030 None:intergenic 45.0%
CATCTCAGTTGGTTACCAAG+GGG - chr1_1:20199012-20199031 None:intergenic 45.0%
GCATCTCAGTTGGTTACCAA+GGG - chr1_1:20199013-20199032 None:intergenic 45.0%
TAACCAACTGAGATGCCACT+CGG + chr1_1:20199017-20199036 Msa0013050:intron 45.0%
! CACACATTTGTTGCAGTTGG+TGG + chr1_1:20199122-20199141 Msa0013050:intron 45.0%
CGAGAAAAAGGAGCAATCAG+TGG + chr1_1:20199246-20199265 Msa0013050:three_prime_UTR 45.0%
! TGGCTGATTCTCATAGTCCA+AGG + chr1_1:20199282-20199301 Msa0013050:three_prime_UTR 45.0%
! GGCTGATTCTCATAGTCCAA+GGG + chr1_1:20199283-20199302 Msa0013050:three_prime_UTR 45.0%
!!! TTTTAAAAATTTGAAAAATA+TGG + chr1_1:20194377-20194396 Msa0013050:intron 5.0%
!! TTGAAATAAAAAATAATAAA+AGG - chr1_1:20194707-20194726 None:intergenic 5.0%
TGCTAGGGGCTAAGATTGGT+GGG - chr1_1:20191032-20191051 None:intergenic 50.0%
TTGCTAGGGGCTAAGATTGG+TGG - chr1_1:20191033-20191052 None:intergenic 50.0%
! TGCTTGCTAGGGGCTAAGAT+TGG - chr1_1:20191036-20191055 None:intergenic 50.0%
GTCATTGTGGGAACGATCGA+CGG - chr1_1:20191132-20191151 None:intergenic 50.0%
!! CGAGGTGTTGTTGGTCATTG+TGG - chr1_1:20191145-20191164 None:intergenic 50.0%
!! AACTCACCGATTCCTCAACC+TGG + chr1_1:20191211-20191230 Msa0013050:CDS 50.0%
! GTTCCACCAGGTTGAGGAAT+CGG - chr1_1:20191220-20191239 None:intergenic 50.0%
GAACGACATCGACGATTCTC+CGG + chr1_1:20191236-20191255 Msa0013050:CDS 50.0%
ACATCGACGATTCTCCGGTT+TGG + chr1_1:20191241-20191260 Msa0013050:CDS 50.0%
AAGATGCGGTCTTGCCAAAC+CGG - chr1_1:20191258-20191277 None:intergenic 50.0%
TGTACAGAGGTTACAGCCAG+AGG + chr1_1:20191705-20191724 Msa0013050:CDS 50.0%
!!! TTTGGTTTTGAACTCCGGGG+TGG + chr1_1:20191791-20191810 Msa0013050:intron 50.0%
TTGAAATGGAGGAGGGCCTA+TGG + chr1_1:20191814-20191833 Msa0013050:intron 50.0%
TGAAATGGAGGAGGGCCTAT+GGG + chr1_1:20191815-20191834 Msa0013050:intron 50.0%
CCACGGATCACGGAAAATAG+CGG - chr1_1:20192967-20192986 None:intergenic 50.0%
GGGGACATTAGAGGGAAAGT+TGG + chr1_1:20193029-20193048 Msa0013050:intron 50.0%
ACTAAGTGGAGCTGGCTACA+TGG - chr1_1:20193280-20193299 None:intergenic 50.0%
!! ATGCACTCCTGGTCTTGTTC+TGG + chr1_1:20193620-20193639 Msa0013050:CDS 50.0%
!! TGCACTCCTGGTCTTGTTCT+GGG + chr1_1:20193621-20193640 Msa0013050:CDS 50.0%
ACTTGGCTTCAGTCCATCAG+TGG - chr1_1:20193793-20193812 None:intergenic 50.0%
AAAATCCACCGCAGTGCACA+TGG - chr1_1:20194513-20194532 None:intergenic 50.0%
CTGCTATGGCCTGTGTATGA+AGG + chr1_1:20194544-20194563 Msa0013050:intron 50.0%
TATGGCCTGTGTATGAAGGC+TGG + chr1_1:20194548-20194567 Msa0013050:intron 50.0%
TATGAAGGCTGGTGGCACAA+TGG + chr1_1:20194559-20194578 Msa0013050:intron 50.0%
! TGGCGGAAATGGCCTGTTTT+TGG + chr1_1:20194579-20194598 Msa0013050:intron 50.0%
! CATGGTGGAAGGCCAAAAAC+AGG - chr1_1:20194594-20194613 None:intergenic 50.0%
!!! CTGTTTTTGGCCTTCCACCA+TGG + chr1_1:20194592-20194611 Msa0013050:intron 50.0%
CTATGGTACTGTCTACAGGC+AGG + chr1_1:20195482-20195501 Msa0013050:intron 50.0%
CTGTGTGTGACCACTTTCCA+AGG + chr1_1:20195524-20195543 Msa0013050:intron 50.0%
!! AATTCAAGGTGGTGGAGCCT+TGG - chr1_1:20195544-20195563 None:intergenic 50.0%
GAGGGAGTAGGATATGTGGA+CGG + chr1_1:20195728-20195747 Msa0013050:intron 50.0%
TGCGCAGACGCAAACAGAAT+CGG + chr1_1:20195896-20195915 Msa0013050:intron 50.0%
CAGACGCAAACAGAATCGGA+CGG + chr1_1:20195900-20195919 Msa0013050:intron 50.0%
CACACAGAAACCGTAGAACC+AGG - chr1_1:20195939-20195958 None:intergenic 50.0%
!! CTGGTTCTACGGTTTCTGTG+TGG + chr1_1:20195937-20195956 Msa0013050:intron 50.0%
! CGTAATTTGGTGGGAAGCTG+GGG - chr1_1:20195963-20195982 None:intergenic 50.0%
TGCGATTCTGTGAACAGGCT+AGG - chr1_1:20196008-20196027 None:intergenic 50.0%
! GCCCTTGGCTTTCTTCTCTA+CGG + chr1_1:20196652-20196671 Msa0013050:CDS 50.0%
CACCGTAGAGAAGAAAGCCA+AGG - chr1_1:20196657-20196676 None:intergenic 50.0%
! CTTGGCTTTCTTCTCTACGG+TGG + chr1_1:20196655-20196674 Msa0013050:CDS 50.0%
GCTTTCTTCTCTACGGTGGA+AGG + chr1_1:20196659-20196678 Msa0013050:CDS 50.0%
TTCTCTAGACCCTGCTATGG+TGG - chr1_1:20197833-20197852 None:intergenic 50.0%
ACCATAGCAGGGTCTAGAGA+AGG + chr1_1:20197832-20197851 Msa0013050:intron 50.0%
CCATAGCAGGGTCTAGAGAA+GGG + chr1_1:20197833-20197852 Msa0013050:intron 50.0%
GAGAAGGGTTAAACCTCCTG+TGG + chr1_1:20197848-20197867 Msa0013050:intron 50.0%
GGGTTAAACCTCCTGTGGTA+CGG + chr1_1:20197853-20197872 Msa0013050:intron 50.0%
GAATACAACCGTACCACAGG+AGG - chr1_1:20197864-20197883 None:intergenic 50.0%
GCTGAATACAACCGTACCAC+AGG - chr1_1:20197867-20197886 None:intergenic 50.0%
CAACAACCTCACCCCCTATA+AGG + chr1_1:20198098-20198117 Msa0013050:intron 50.0%
CAGTTTCCTTATAGGGGGTG+AGG - chr1_1:20198107-20198126 None:intergenic 50.0%
CTCACCCCCTATAAGGAAAC+TGG + chr1_1:20198105-20198124 Msa0013050:intron 50.0%
GGGCAGAAATTCTCAACCCT+TGG - chr1_1:20198173-20198192 None:intergenic 50.0%
! ATCTCAAAGGCTAGCTCAGG+GGG - chr1_1:20198194-20198213 None:intergenic 50.0%
AGATCACGGCTGCTTAGAAG+CGG - chr1_1:20198385-20198404 None:intergenic 50.0%
CTTCTAAGCAGCCGTGATCT+AGG + chr1_1:20198385-20198404 Msa0013050:intron 50.0%
GGATATTGGGTGTGGGTTCA+TGG + chr1_1:20198961-20198980 Msa0013050:intron 50.0%
GGCATCTCAGTTGGTTACCA+AGG - chr1_1:20199014-20199033 None:intergenic 50.0%
TGAGATGCCACTCGGCTAAA+AGG + chr1_1:20199025-20199044 Msa0013050:intron 50.0%
! TAAACGGCCTTTTAGCCGAG+TGG - chr1_1:20199035-20199054 None:intergenic 50.0%
TGTGTGATACCACGCTTTGG+TGG - chr1_1:20199192-20199211 None:intergenic 50.0%
GGAACGATCGACGGAGTTTG+GGG - chr1_1:20191123-20191142 None:intergenic 55.0%
GGGAACGATCGACGGAGTTT+GGG - chr1_1:20191124-20191143 None:intergenic 55.0%
TGGGAACGATCGACGGAGTT+TGG - chr1_1:20191125-20191144 None:intergenic 55.0%
!! TCACCGATTCCTCAACCTGG+TGG + chr1_1:20191214-20191233 Msa0013050:CDS 55.0%
GATGTCGTTCCACCAGGTTG+AGG - chr1_1:20191226-20191245 None:intergenic 55.0%
ATCGTCGATGTCGTTCCACC+AGG - chr1_1:20191232-20191251 None:intergenic 55.0%
CGTCGTTTCCGCCATAGCTT+TGG + chr1_1:20191302-20191321 Msa0013050:CDS 55.0%
GAACTCCGGGGTGGTTGAAA+TGG + chr1_1:20191800-20191819 Msa0013050:intron 55.0%
CTCCTCCATTTCAACCACCC+CGG - chr1_1:20191808-20191827 None:intergenic 55.0%
GGGGTGGTTGAAATGGAGGA+GGG + chr1_1:20191807-20191826 Msa0013050:intron 55.0%
GAAATGGAGGAGGGCCTATG+GGG + chr1_1:20191816-20191835 Msa0013050:intron 55.0%
TTGGGATTGAGTGGGTGGAC+TGG - chr1_1:20192406-20192425 None:intergenic 55.0%
!! CCGCTATTTTCCGTGATCCG+TGG + chr1_1:20192964-20192983 Msa0013050:intron 55.0%
TCTCAGCCCAGAACAAGACC+AGG - chr1_1:20193630-20193649 None:intergenic 55.0%
GCACGTGCTGTATCCACTGA+TGG + chr1_1:20193777-20193796 Msa0013050:CDS 55.0%
GGCACTAGGCTCGAAAGTCA+AGG + chr1_1:20194157-20194176 Msa0013050:intron 55.0%
AGTAGAGGCCATGTGCACTG+CGG + chr1_1:20194502-20194521 Msa0013050:intron 55.0%
TGCCACCAGCCTTCATACAC+AGG - chr1_1:20194556-20194575 None:intergenic 55.0%
! TGGTGGCACAATGGCGGAAA+TGG + chr1_1:20194568-20194587 Msa0013050:intron 55.0%
TTGTGGATGGCTGACCATGG+TGG - chr1_1:20194609-20194628 None:intergenic 55.0%
TGGTTGTGGATGGCTGACCA+TGG - chr1_1:20194612-20194631 None:intergenic 55.0%
GAGCTGGAATGCGAGTCACT+TGG - chr1_1:20195439-20195458 None:intergenic 55.0%
GCAGTGCATAGCAGCAGTGA+CGG + chr1_1:20195662-20195681 Msa0013050:intron 55.0%
CGACGCCCTTTGGATTCAAC+AGG - chr1_1:20197218-20197237 None:intergenic 55.0%
CAGCTTCTTACGACGCCCTT+TGG - chr1_1:20197228-20197247 None:intergenic 55.0%
GCGTCGTAAGAAGCTGCAAG+AGG + chr1_1:20197232-20197251 Msa0013050:CDS 55.0%
CCCTTCTCTAGACCCTGCTA+TGG - chr1_1:20197836-20197855 None:intergenic 55.0%
! TCTCAAAGGCTAGCTCAGGG+GGG - chr1_1:20198193-20198212 None:intergenic 55.0%
GGAGGAGAGAGAGAGTGGAA+AGG + chr1_1:20198511-20198530 Msa0013050:intron 55.0%
GGGGGATGTGGTGTTCAAGA+TGG - chr1_1:20198993-20199012 None:intergenic 55.0%
CTTGAACACCACATCCCCCT+TGG + chr1_1:20198994-20199013 Msa0013050:intron 55.0%
GTTGGTTACCAAGGGGGATG+TGG - chr1_1:20199005-20199024 None:intergenic 55.0%
TAGCCGAGTGGCATCTCAGT+TGG - chr1_1:20199023-20199042 None:intergenic 55.0%
AGGAAGCTTCCACCAAAGCG+TGG + chr1_1:20199180-20199199 Msa0013050:CDS 55.0%
CAACAACACCTCGCCGTCGT+CGG + chr1_1:20191152-20191171 Msa0013050:CDS 60.0%
! CGGCGAGGGTGTAGAAGATG+CGG - chr1_1:20191272-20191291 None:intergenic 60.0%
CGCATCTTCTACACCCTCGC+CGG + chr1_1:20191270-20191289 Msa0013050:CDS 60.0%
TACACCCTCGCCGGCCTTTA+CGG + chr1_1:20191279-20191298 Msa0013050:CDS 60.0%
GGAAACGACGCCGTAAAGGC+CGG - chr1_1:20191292-20191311 None:intergenic 60.0%
TGGCGGAAACGACGCCGTAA+AGG - chr1_1:20191296-20191315 None:intergenic 60.0%
CTCCGGGGTGGTTGAAATGG+AGG + chr1_1:20191803-20191822 Msa0013050:intron 60.0%
CGGGGTGGTTGAAATGGAGG+AGG + chr1_1:20191806-20191825 Msa0013050:intron 60.0%
!! GGATTGAGTGGGTGGACTGG+TGG - chr1_1:20192403-20192422 None:intergenic 60.0%
GGCCTGTGTATGAAGGCTGG+TGG + chr1_1:20194551-20194570 Msa0013050:intron 60.0%
GAAGGCTGGTGGCACAATGG+CGG + chr1_1:20194562-20194581 Msa0013050:intron 60.0%
! GGATGGCTGACCATGGTGGA+AGG - chr1_1:20194605-20194624 None:intergenic 60.0%
!! GGTGGTGGAGCCTTGGAAAG+TGG - chr1_1:20195537-20195556 None:intergenic 60.0%
AAGCACGTGAAAGGGGGCGA+CGG - chr1_1:20195792-20195811 None:intergenic 60.0%
CACAGATCAGGTCTGCGACC+TGG - chr1_1:20195865-20195884 None:intergenic 60.0%
GACGGTGCACACAGTTCTCC+TGG + chr1_1:20195918-20195937 Msa0013050:intron 60.0%
!! CGACGACGGCGAGGTGTTGT+TGG - chr1_1:20191154-20191173 None:intergenic 65.0%
AGAGGCCATGTGCACTGCGG+TGG + chr1_1:20194505-20194524 Msa0013050:intron 65.0%
! GGAGTTTGGGGCACACGCGC+CGG - chr1_1:20191111-20191130 None:intergenic 70.0%
ACCTCGCCGTCGTCGGTGAC+AGG + chr1_1:20191159-20191178 Msa0013050:CDS 70.0%
ACCGCGCCTGTCACCGACGA+CGG - chr1_1:20191168-20191187 None:intergenic 70.0%
GACAGGCGCGGTGGTGAACG+CGG + chr1_1:20191176-20191195 Msa0013050:CDS 70.0%
GACGCCGTAAAGGCCGGCGA+GGG - chr1_1:20191286-20191305 None:intergenic 70.0%
GCCTGTCACCGACGACGGCG+AGG - chr1_1:20191163-20191182 None:intergenic 75.0%
GCCGTCGTCGGTGACAGGCG+CGG + chr1_1:20191164-20191183 Msa0013050:CDS 75.0%
GTCGTCGGTGACAGGCGCGG+TGG + chr1_1:20191167-20191186 Msa0013050:CDS 75.0%
AGGCGCGGTGGTGAACGCGG+TGG + chr1_1:20191179-20191198 Msa0013050:CDS 75.0%
CGACGCCGTAAAGGCCGGCG+AGG - chr1_1:20191287-20191306 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 20191003 20199345 20191003 ID=Msa0013050;Name=Msa0013050
chr1_1 mRNA 20191003 20199345 20191003 ID=Msa0013050-mRNA-1;Parent=Msa0013050;Name=Msa0013050-mRNA-1;_AED=0.10;_eAED=0.10;_QI=144|1|1|1|1|1|11|115|297
chr1_1 exon 20191003 20191323 20191003 ID=Msa0013050-mRNA-1:exon:7194;Parent=Msa0013050-mRNA-1
chr1_1 exon 20191462 20191552 20191462 ID=Msa0013050-mRNA-1:exon:7195;Parent=Msa0013050-mRNA-1
chr1_1 exon 20191674 20191726 20191674 ID=Msa0013050-mRNA-1:exon:7196;Parent=Msa0013050-mRNA-1
chr1_1 exon 20193568 20193660 20193568 ID=Msa0013050-mRNA-1:exon:7197;Parent=Msa0013050-mRNA-1
chr1_1 exon 20193777 20193848 20193777 ID=Msa0013050-mRNA-1:exon:7198;Parent=Msa0013050-mRNA-1
chr1_1 exon 20196464 20196536 20196464 ID=Msa0013050-mRNA-1:exon:7199;Parent=Msa0013050-mRNA-1
chr1_1 exon 20196635 20196680 20196635 ID=Msa0013050-mRNA-1:exon:7200;Parent=Msa0013050-mRNA-1
chr1_1 exon 20197190 20197253 20197190 ID=Msa0013050-mRNA-1:exon:7201;Parent=Msa0013050-mRNA-1
chr1_1 exon 20198641 20198694 20198641 ID=Msa0013050-mRNA-1:exon:7202;Parent=Msa0013050-mRNA-1
chr1_1 exon 20198778 20198855 20198778 ID=Msa0013050-mRNA-1:exon:7203;Parent=Msa0013050-mRNA-1
chr1_1 exon 20199138 20199345 20199138 ID=Msa0013050-mRNA-1:exon:7204;Parent=Msa0013050-mRNA-1
chr1_1 five_prime_UTR 20191003 20191146 20191003 ID=Msa0013050-mRNA-1:five_prime_utr;Parent=Msa0013050-mRNA-1
chr1_1 CDS 20191147 20191323 20191147 ID=Msa0013050-mRNA-1:cds;Parent=Msa0013050-mRNA-1
chr1_1 CDS 20191462 20191552 20191462 ID=Msa0013050-mRNA-1:cds;Parent=Msa0013050-mRNA-1
chr1_1 CDS 20191674 20191726 20191674 ID=Msa0013050-mRNA-1:cds;Parent=Msa0013050-mRNA-1
chr1_1 CDS 20193568 20193660 20193568 ID=Msa0013050-mRNA-1:cds;Parent=Msa0013050-mRNA-1
chr1_1 CDS 20193777 20193848 20193777 ID=Msa0013050-mRNA-1:cds;Parent=Msa0013050-mRNA-1
chr1_1 CDS 20196464 20196536 20196464 ID=Msa0013050-mRNA-1:cds;Parent=Msa0013050-mRNA-1
chr1_1 CDS 20196635 20196680 20196635 ID=Msa0013050-mRNA-1:cds;Parent=Msa0013050-mRNA-1
chr1_1 CDS 20197190 20197253 20197190 ID=Msa0013050-mRNA-1:cds;Parent=Msa0013050-mRNA-1
chr1_1 CDS 20198641 20198694 20198641 ID=Msa0013050-mRNA-1:cds;Parent=Msa0013050-mRNA-1
chr1_1 CDS 20198778 20198855 20198778 ID=Msa0013050-mRNA-1:cds;Parent=Msa0013050-mRNA-1
chr1_1 CDS 20199138 20199230 20199138 ID=Msa0013050-mRNA-1:cds;Parent=Msa0013050-mRNA-1
chr1_1 three_prime_UTR 20199231 20199345 20199231 ID=Msa0013050-mRNA-1:three_prime_utr;Parent=Msa0013050-mRNA-1
Gene Sequence

>Msa0013050

ATGACCAACAACACCTCGCCGTCGTCGGTGACAGGCGCGGTGGTGAACGCGGTGGCAGCAATTGAACTCACCGATTCCTCAACCTGGTGGAACGACATCGACGATTCTCCGGTTTGGCAAGACCGCATCTTCTACACCCTCGCCGGCCTTTACGGCGTCGTTTCCGCCATAGCTTTGATTCAACTTGTTAGAATACAATTGAGAGTTCCAGAATATGGTTGGACTACCCAGAAGGTGTTTCATTTTCTCAATTTTGTGGTGAATGCAGTTCGATGTTTAGTTTTCATCTTCTTTCGGAATGTACAGAGGTTACAGCCAGAGATTGTCCAACATATCTTACTTGATGTGCCAAGTCTTGCTTTCTTTACAACATATGCACTCCTGGTCTTGTTCTGGGCTGAGATTTATTACCAGGCACGTGCTGTATCCACTGATGGACTGAAGCCAAGTTTCTATACAATTAATGTTGTGGTTTATGCTGTTCAGATCATTTTGTGGTTGATATTATGGTGGAAACCAGTCAGCGTACTAGTCATTCTGTCAAAGGTGTTCTTTGCAGCGGTTTCTTTGTTTGCTGCCCTTGGCTTTCTTCTCTACGGTGGAAGACTATTCTTGATGCTGCAACGCTTTCCTGTTGAATCCAAAGGGCGTCGTAAGAAGCTGCAAGAGGTTGGCTATGTGACAACAATATGTTTTCTATGTTTCCTTATCAGAAGTGTTATGATGTGCTTTAATGCATTTGATAAAAATGCGAACCTTAATGTGATGGACCATCCTATTCTAAACTTCATATATTACCTGTTGGTGGAAATATTACCTTCTTCTTTGGTCTTGTTCATTTTGAGGAAGCTTCCACCAAAGCGTGGTATCACACAATATCACCCGATTCGCTGA

Protein sequence

>Msa0013050

MTNNTSPSSVTGAVVNAVAAIELTDSSTWWNDIDDSPVWQDRIFYTLAGLYGVVSAIALIQLVRIQLRVPEYGWTTQKVFHFLNFVVNAVRCLVFIFFRNVQRLQPEIVQHILLDVPSLAFFTTYALLVLFWAEIYYQARAVSTDGLKPSFYTINVVVYAVQIILWLILWWKPVSVLVILSKVFFAAVSLFAALGFLLYGGRLFLMLQRFPVESKGRRKKLQEVGYVTTICFLCFLIRSVMMCFNAFDKNANLNVMDHPILNFIYYLLVEILPSSLVLFILRKLPPKRGITQYHPIR*