AlfalfaGEDB | Msa1034240

M. sativa cultivar zhongmu-4 / Msa1034240

KEGG: K00006
GO: GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0036094 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050662 GO:0051287 GO:0097159 GO:1901265 GO:1901363
PFAM: PF07479.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1034240	KEH23613.1	100.000	129	0	0	1	129	289	417	3.21e-85	265

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1034240	sp\|Q8S0G4\|GPDH1_ORYSJ	89.147	129	14	0	1	129	288	416	2.12e-78	241

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1034240	A0A072U398	100.000	129	0	0	1	129	289	417	1.53e-85	265

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1034240	Msa1122030	0.807440	5.049302e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1034240	MtrunA17_Chr7g0257111	100.000	129	0	0	1	129	289	417	5.93e-89	265
Msa1034240	MtrunA17_Chr4g0020581	91.473	129	11	0	1	129	289	417	3.82e-79	240

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa1034240	AT3G07690.2	84.496	129	20	1	129	287	415	1.11e-72	224
Msa1034240	AT3G07690.1	84.496	129	20	1	129	297	425	1.19e-72	224
Msa1034240	AT2G41540.3	88.372	129	15	1	129	294	422	4.83e-69	214
Msa1034240	AT2G41540.1	88.372	129	15	1	129	294	422	4.83e-69	214
Msa1034240	AT2G41540.4	88.372	129	15	1	129	294	422	4.83e-69	214
Msa1034240	AT2G41540.2	88.372	129	15	1	129	294	422	4.83e-69	214

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Find 28 sgRNAs with CRISPR-Local

Find 33 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGTCGTAACGCGTGGTA+CGG	0.542056	7_1:-69664754	Msa1034240:CDS
AATGGTCCAGCAAGTTTCTC+AGG	0.467384	7_1:+69664805	None:intergenic
ACATAAGTATCAGCTAGTAA+TGG	0.625233	7_1:+69664787	None:intergenic
ACTTATGTGACATTGTTAAA+AGG	0.274708	7_1:-69664772	Msa1034240:CDS
AGGATAGGGCAAAGTTCAAC+AGG	0.442918	7_1:+69664421	None:intergenic
AGTAGCACTCTCATTGGTAA+GGG	0.611334	7_1:+69664897	None:intergenic
CTAATGCTGTCACCCATGTC+AGG	0.381833	7_1:+69664703	None:intergenic
CTAGGGAGTGTCTGCAGTGG+AGG	0.524080	7_1:-69664512	Msa1034240:intron
CTTCAGGATGCAATACATTT+AGG	0.253998	7_1:+69664461	None:intergenic
GAAGAGCCTGAGAAACTTGC+TGG	0.392061	7_1:-69664811	Msa1034240:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACATAAGTATCAGCTAGTAA+TGG	+	chr7_1:69664510-69664529	None:intergenic	30.0%
TACGGTCAAATGTTAGCTAA+GGG	-	chr7_1:69664558-69664577	Msa1034240:intron	35.0%
GCAATACATTTAGGCTTGAT+TGG	+	chr7_1:69664827-69664846	None:intergenic	35.0%
CTTCAGGATGCAATACATTT+AGG	+	chr7_1:69664836-69664855	None:intergenic	35.0%
AGTAGCACTCTCATTGGTAA+GGG	+	chr7_1:69664400-69664419	None:intergenic	40.0%
TAGTAGCACTCTCATTGGTA+AGG	+	chr7_1:69664401-69664420	None:intergenic	40.0%
TTTGCTAGTAGCACTCTCAT+TGG	+	chr7_1:69664406-69664425	None:intergenic	40.0%
GTACGGTCAAATGTTAGCTA+AGG	-	chr7_1:69664557-69664576	Msa1034240:intron	40.0%
TCTCAGGCTCTTCAGTTAAC+AGG	+	chr7_1:69664476-69664495	None:intergenic	45.0%
AATGGTCCAGCAAGTTTCTC+AGG	+	chr7_1:69664492-69664511	None:intergenic	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	69664387	69664929	69664387	ID=Msa1034240;Name=Msa1034240
chr7_1	mRNA	69664387	69664929	69664387	ID=Msa1034240-mRNA-1;Parent=Msa1034240;Name=Msa1034240-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0\|1\|0\|1\|1\|1\|2\|0\|129
chr7_1	exon	69664684	69664929	69664684	ID=Msa1034240-mRNA-1:exon:16471;Parent=Msa1034240-mRNA-1
chr7_1	exon	69664387	69664530	69664387	ID=Msa1034240-mRNA-1:exon:16470;Parent=Msa1034240-mRNA-1
chr7_1	CDS	69664684	69664929	69664684	ID=Msa1034240-mRNA-1:cds;Parent=Msa1034240-mRNA-1
chr7_1	CDS	69664387	69664530	69664387	ID=Msa1034240-mRNA-1:cds;Parent=Msa1034240-mRNA-1

Gene Sequence

>Msa1034240

ATGGTAGCATCCCTTACCAATGAGAGTGCTACTAGCAAATCTGTATACTTTGCACATTGTACTTCAGAGATGATATTCATCACTCACCTGTTAACTGAAGAGCCTGAGAAACTTGCTGGACCATTACTAGCTGATACTTATGTGACATTGTTAAAAGGTCGTAACGCGTGGTACGGTCAAATGTTAGCTAAGGGTGAACTAAGCCCTGACATGGGTGACAGCATTAGCGGCAAAGGAATGATTCAGGGAGTGTCTGCAGTGGAGGCATTCTTTGAGCTTTTGAGCCAATCAAGCCTAAATGTATTGCATCCTGAAGAAAAAAAGCATGTTGCTCCTGTTGAACTTTGCCCTATCCTGAAGACACTCTACAAAATATTGATATCCAGGTAA

Protein sequence

>Msa1034240

MVASLTNESATSKSVYFAHCTSEMIFITHLLTEEPEKLAGPLLADTYVTLLKGRNAWYGQMLAKGELSPDMGDSISGKGMIQGVSAVEAFFELLSQSSLNVLHPEEKKHVAPVELCPILKTLYKILISR*