Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1122030 | XP_003625105.2 | 99.562 | 457 | 2 | 0 | 1 | 457 | 1 | 457 | 0.0 | 942 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1122030 | sp|Q8S0G4|GPDH1_ORYSJ | 86.184 | 456 | 62 | 1 | 1 | 456 | 1 | 455 | 0.0 | 822 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1122030 | G7KSM3 | 99.562 | 457 | 2 | 0 | 1 | 457 | 1 | 457 | 0.0 | 942 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0043670 | Msa1122030 | -0.801437 | 9.008814e-49 | -8.615850e-47 |
| Msa0092740 | Msa1122030 | -0.810121 | 1.349518e-50 | -8.615850e-47 |
| Msa0801210 | Msa1122030 | 0.810417 | 1.164801e-50 | -8.615850e-47 |
| Msa0134180 | Msa1122030 | 0.812856 | 3.435295e-51 | -8.615850e-47 |
| Msa0137610 | Msa1122030 | -0.814425 | 1.551239e-51 | -8.615850e-47 |
| Msa0237080 | Msa1122030 | 0.803974 | 2.698137e-49 | -8.615850e-47 |
| Msa1034230 | Msa1122030 | 0.811040 | 8.540897e-51 | -8.615850e-47 |
| Msa1034240 | Msa1122030 | 0.807440 | 5.049302e-50 | -8.615850e-47 |
| Msa1122030 | Msa1159760 | 0.824264 | 8.870718e-54 | -8.615850e-47 |
| Msa1122030 | Msa1173330 | 0.804999 | 1.649348e-49 | -8.615850e-47 |
| Msa1122030 | Msa1232710 | 0.816565 | 5.178217e-52 | -8.615850e-47 |
| Msa1122030 | Msa1252190 | 0.801854 | 7.398484e-49 | -8.615850e-47 |
| Msa1122030 | Msa1307570 | 0.800283 | 1.549517e-48 | -8.615850e-47 |
| Msa1122030 | Msa1313300 | 0.816404 | 5.626910e-52 | -8.615850e-47 |
| Msa1122030 | Msa1440260 | -0.804699 | 1.905592e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1122030 | MtrunA17_Chr7g0257111 | 99.562 | 457 | 2 | 0 | 1 | 457 | 1 | 457 | 0.0 | 942 |
| Msa1122030 | MtrunA17_Chr4g0020581 | 85.333 | 450 | 66 | 0 | 8 | 457 | 8 | 457 | 0.0 | 806 |
| Msa1122030 | MtrunA17_Chr6g0458181 | 26.859 | 417 | 215 | 18 | 13 | 413 | 14 | 356 | 5.61e-15 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1122030 | AT2G41540.3 | 87.638 | 453 | 56 | 0 | 4 | 456 | 9 | 461 | 0.0 | 816 |
| Msa1122030 | AT2G41540.1 | 87.638 | 453 | 56 | 0 | 4 | 456 | 9 | 461 | 0.0 | 816 |
| Msa1122030 | AT2G41540.4 | 87.638 | 453 | 56 | 0 | 4 | 456 | 9 | 461 | 0.0 | 816 |
| Msa1122030 | AT2G41540.2 | 87.638 | 453 | 56 | 0 | 4 | 456 | 9 | 461 | 0.0 | 816 |
| Msa1122030 | AT3G07690.2 | 80.682 | 440 | 85 | 0 | 18 | 457 | 16 | 455 | 0.0 | 758 |
| Msa1122030 | AT3G07690.1 | 78.889 | 450 | 85 | 1 | 18 | 457 | 16 | 465 | 0.0 | 750 |
| Msa1122030 | AT5G40610.1 | 26.396 | 394 | 217 | 17 | 38 | 419 | 56 | 388 | 3.17e-15 | 77.8 |
Find 100 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAAGTGTTACTCCAATTT+TGG | 0.161566 | 7_3:-72236357 | None:intergenic |
| TTAGGATAAGAATAAGATTT+TGG | 0.174143 | 7_3:-72233227 | None:intergenic |
| CACTACATTGTGGCCAAAAT+TGG | 0.183547 | 7_3:+72236344 | Msa1122030:three_prime_UTR |
| TGGCTATTGTTTCCTATATA+TGG | 0.194703 | 7_3:-72236199 | None:intergenic |
| TAGATTTCTGAAGCAATATT+TGG | 0.204065 | 7_3:-72234591 | None:intergenic |
| CCAATACACACAATTCTTAA+TGG | 0.226759 | 7_3:-72233553 | None:intergenic |
| TTCTACAGGCCTTCACTTCT+TGG | 0.227692 | 7_3:+72236131 | Msa1122030:CDS |
| CTTCAGGATGCAATACATTT+AGG | 0.253998 | 7_3:-72235734 | None:intergenic |
| GACAACCACATTTCATTGTA+TGG | 0.268525 | 7_3:+72234685 | Msa1122030:CDS |
| TTCGAAAATCTCACGAGTTT+CGG | 0.269563 | 7_3:-72233938 | None:intergenic |
| ATTTATTCTTGTTACTTGTT+AGG | 0.270482 | 7_3:-72233245 | None:intergenic |
| ACTTATGTGACATTGTTAAA+AGG | 0.274708 | 7_3:+72235423 | Msa1122030:CDS |
| TCAAGATTTCATCCCTTGTT+TGG | 0.306428 | 7_3:+72233380 | Msa1122030:five_prime_UTR |
| GATGCTGATATTGTTGTTAA+TGG | 0.309247 | 7_3:+72233904 | Msa1122030:CDS |
| TCTCAGGCTCTTCAGTTAAC+AGG | 0.316025 | 7_3:-72235374 | None:intergenic |
| CTAATTTGCAAGAAGCTGTT+TGG | 0.326140 | 7_3:+72233881 | Msa1122030:CDS |
| ACAAAGTACAGATCAGAATA+TGG | 0.327599 | 7_3:+72233638 | Msa1122030:CDS |
| GCAATACATTTAGGCTTGAT+TGG | 0.338071 | 7_3:-72235725 | None:intergenic |
| TCATCTCAGAATCATAATAA+TGG | 0.350904 | 7_3:+72233475 | Msa1122030:CDS |
| CAAGTAACAAGAATAAATTT+TGG | 0.355376 | 7_3:+72233250 | Msa1122030:five_prime_UTR |
| TAATTTGCAAGAAGCTGTTT+GGG | 0.364920 | 7_3:+72233882 | Msa1122030:CDS |
| TTAGACAAAGAGATTATAAC+AGG | 0.371377 | 7_3:-72233997 | None:intergenic |
| GTGTATTGGAGCAGGTGCTT+GGG | 0.379094 | 7_3:+72233567 | Msa1122030:CDS |
| CTAATGCTGTCACCCATGTC+AGG | 0.381833 | 7_3:-72235492 | None:intergenic |
| ATTATTATTATATGTCCCTT+TGG | 0.386293 | 7_3:-72236219 | None:intergenic |
| TGTGTATTGGAGCAGGTGCT+TGG | 0.388031 | 7_3:+72233566 | Msa1122030:CDS |
| GAAGAGCCTGAGAAACTTGC+TGG | 0.392061 | 7_3:+72235384 | Msa1122030:CDS |
| CACAATGTTAGTATATTAAT+AGG | 0.397077 | 7_3:+72233303 | Msa1122030:five_prime_UTR |
| TCGAAGAGATTAGTAAGTAT+TGG | 0.404360 | 7_3:+72233956 | Msa1122030:CDS |
| ATCTCACGAGTTTCGGTTGA+AGG | 0.407631 | 7_3:-72233931 | None:intergenic |
| ACAACTTTCAAAGGACAAAC+TGG | 0.408473 | 7_3:-72233856 | None:intergenic |
| ATGGAGAACATACTTTATCT+TGG | 0.408674 | 7_3:+72234564 | Msa1122030:CDS |
| TGCTATTCTAAAAGCTTTGA+GGG | 0.411503 | 7_3:+72236055 | Msa1122030:CDS |
| TGTCTAAGAAACTTTGCTAA+AGG | 0.417206 | 7_3:-72234666 | None:intergenic |
| AAATGTGAATGTAAGTTGTT+AGG | 0.427959 | 7_3:-72233357 | None:intergenic |
| GAATCATAATAATGGATTAG+AGG | 0.429843 | 7_3:+72233483 | Msa1122030:CDS |
| GTTATAATCTCTTTGTCTAA+AGG | 0.430598 | 7_3:+72234000 | Msa1122030:CDS |
| ATGCTATTCTAAAAGCTTTG+AGG | 0.430646 | 7_3:+72236054 | Msa1122030:CDS |
| TAGCGGCAAAGGAATGATTC+AGG | 0.431970 | 7_3:+72235512 | Msa1122030:CDS |
| TTGTAGAGTGTCTTCAGGAT+AGG | 0.442108 | 7_3:-72235789 | None:intergenic |
| AGGATAGGGCAAAGTTCAAC+AGG | 0.442918 | 7_3:-72235774 | None:intergenic |
| GGAGTTACAATATGAGGAAC+AGG | 0.446394 | 7_3:-72234042 | None:intergenic |
| TGTAGAGTGTCTTCAGGATA+GGG | 0.449158 | 7_3:-72235788 | None:intergenic |
| GCTGATGAGATTCTTAAAGA+TGG | 0.452510 | 7_3:+72233808 | Msa1122030:CDS |
| CCATTAAGAATTGTGTGTAT+TGG | 0.455692 | 7_3:+72233553 | Msa1122030:CDS |
| TCGAAGCAAGACTTGGTGAT+AGG | 0.461808 | 7_3:+72233776 | Msa1122030:CDS |
| TTTGCTAGTAGCACTCTCAT+TGG | 0.465676 | 7_3:-72235304 | None:intergenic |
| TTCGACAGCTGGAGTGCCTA+TGG | 0.466991 | 7_3:+72234545 | Msa1122030:intron |
| AATGGTCCAGCAAGTTTCTC+AGG | 0.467384 | 7_3:-72235390 | None:intergenic |
| CACAAAGTCATGCTTTCTAC+AGG | 0.470610 | 7_3:+72236117 | Msa1122030:CDS |
| TATGCCAATGCTAGAATTTG+TGG | 0.472984 | 7_3:+72234624 | Msa1122030:CDS |
| GTGTGGATGGAACCATATAT+AGG | 0.473104 | 7_3:+72236187 | Msa1122030:three_prime_UTR |
| GAATTTGTGGAGCTGAGAAA+TGG | 0.479515 | 7_3:+72234637 | Msa1122030:CDS |
| AGACTAATTAGTAAAACTAA+TGG | 0.485081 | 7_3:+72233526 | Msa1122030:CDS |
| TCTACAAAATATTGATATCC+AGG | 0.488839 | 7_3:+72235805 | Msa1122030:CDS |
| ATCAGAATATGGAGAAGAGC+AGG | 0.495965 | 7_3:+72233649 | Msa1122030:CDS |
| TAGTAGCACTCTCATTGGTA+AGG | 0.499488 | 7_3:-72235299 | None:intergenic |
| TAAAGGTATTGAAGCTGCAT+TGG | 0.499510 | 7_3:+72234017 | Msa1122030:CDS |
| TTTGTGGGAGTTACAATATG+AGG | 0.502737 | 7_3:-72234048 | None:intergenic |
| ACAACCACATTTCATTGTAT+GGG | 0.504294 | 7_3:+72234686 | Msa1122030:CDS |
| TGTATTGGAGCAGGTGCTTG+GGG | 0.507021 | 7_3:+72233568 | Msa1122030:CDS |
| AGCTCCACAAATTCTAGCAT+TGG | 0.510428 | 7_3:-72234628 | None:intergenic |
| AATATAGTATGCAGCAGCAT+TGG | 0.512575 | 7_3:-72233198 | None:intergenic |
| AAATAAATCTAAGAAGTACT+AGG | 0.516015 | 7_3:-72233408 | None:intergenic |
| AATGTCTATGCAATTGGAGC+TGG | 0.522412 | 7_3:+72234753 | Msa1122030:CDS |
| CTAGGGAGTGTCTGCAGTGG+AGG | 0.524080 | 7_3:+72235683 | Msa1122030:intron |
| AGAGATTAGTAAGTATTGGA+AGG | 0.527494 | 7_3:+72233960 | Msa1122030:CDS |
| CCTTGTCACACATGAGGTCA+TGG | 0.530388 | 7_3:+72234719 | Msa1122030:CDS |
| GAGAACATACTTTATCTTGG+TGG | 0.535772 | 7_3:+72234567 | Msa1122030:CDS |
| GTACGGTCAAATGTTAGCTA+AGG | 0.537842 | 7_3:+72235458 | Msa1122030:CDS |
| TATAGGAAACAATAGCCAAA+GGG | 0.540968 | 7_3:+72236204 | Msa1122030:three_prime_UTR |
| AAAGGTCGTAACGCGTGGTA+CGG | 0.542056 | 7_3:+72235441 | Msa1122030:CDS |
| GACATGGGTGACAGCATTAG+CGG | 0.546090 | 7_3:+72235495 | Msa1122030:CDS |
| AAATTAGTAACAACTTTCAA+AGG | 0.547608 | 7_3:-72233865 | None:intergenic |
| GGTGACAGCATTAGCGGCAA+AGG | 0.550945 | 7_3:+72235501 | Msa1122030:CDS |
| CACTGTTGTCCAAGAAGTGA+AGG | 0.553189 | 7_3:-72236140 | None:intergenic |
| TTTGTGGAGCTGAGAAATGG+AGG | 0.555424 | 7_3:+72234640 | Msa1122030:CDS |
| AGAATTGTGTGTATTGGAGC+AGG | 0.556506 | 7_3:+72233559 | Msa1122030:CDS |
| AAATATGTCGAAGCAAGACT+TGG | 0.559627 | 7_3:+72233769 | Msa1122030:CDS |
| GGGTGAACTAAGCCCTGACA+TGG | 0.571055 | 7_3:+72235479 | Msa1122030:CDS |
| AGATAAAGTATGTTCTCCAT+AGG | 0.586722 | 7_3:-72234561 | None:intergenic |
| TAATGCTGTCACCCATGTCA+GGG | 0.593470 | 7_3:-72235491 | None:intergenic |
| GCAATTGCAATGCGTTCTCG+TGG | 0.608213 | 7_3:-72236095 | None:intergenic |
| AGTAGCACTCTCATTGGTAA+GGG | 0.611334 | 7_3:-72235298 | None:intergenic |
| TACGGTCAAATGTTAGCTAA+GGG | 0.616531 | 7_3:+72235459 | Msa1122030:CDS |
| ATATAGGAAACAATAGCCAA+AGG | 0.619160 | 7_3:+72236203 | Msa1122030:three_prime_UTR |
| ACATAAGTATCAGCTAGTAA+TGG | 0.625233 | 7_3:-72235408 | None:intergenic |
| GTATTGGAGCAGGTGCTTGG+GGG | 0.633991 | 7_3:+72233569 | Msa1122030:CDS |
| GTCACACATGAGGTCATGGG+TGG | 0.637923 | 7_3:+72234723 | Msa1122030:CDS |
| CCATGACCTCATGTGTGACA+AGG | 0.642037 | 7_3:-72234719 | None:intergenic |
| TGTTAAAAGGTCGTAACGCG+TGG | 0.645736 | 7_3:+72235436 | Msa1122030:CDS |
| GTACTAGGAAGAACCAAACA+AGG | 0.649331 | 7_3:-72233393 | None:intergenic |
| CTTGTCACACATGAGGTCAT+GGG | 0.650326 | 7_3:+72234720 | Msa1122030:CDS |
| TATGCAGCAGCATTGGAATG+TGG | 0.653394 | 7_3:-72233191 | None:intergenic |
| TTACTAGGGAGTGTCTGCAG+TGG | 0.667334 | 7_3:+72235680 | Msa1122030:intron |
| TGCTTCAGAAATCTACAACA+AGG | 0.686795 | 7_3:+72234599 | Msa1122030:CDS |
| TAGTGACCTTGTCACACATG+AGG | 0.687205 | 7_3:+72234713 | Msa1122030:CDS |
| GGTGAACTAAGCCCTGACAT+GGG | 0.690260 | 7_3:+72235480 | Msa1122030:CDS |
| TACTAGGAAGAACCAAACAA+GGG | 0.706157 | 7_3:-72233392 | None:intergenic |
| TTGTCCCATACAATGAAATG+TGG | 0.713044 | 7_3:-72234690 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTTTGTTTTTTGAAA+CGG | - | chr7_3:72235565-72235584 | None:intergenic | 10.0% |
| !! | TTTATAAATTGAATTCGTTA+TGG | - | chr7_3:72234420-72234439 | None:intergenic | 15.0% |
| !! | ATAACAATAATAATACAATG+TGG | + | chr7_3:72235839-72235858 | Msa1122030:intron | 15.0% |
| !! | TTACCAAATGTATTATTATT+TGG | - | chr7_3:72235953-72235972 | None:intergenic | 15.0% |
| !!! | TAGGATAAGAATAAGATTTT+GGG | - | chr7_3:72233229-72233248 | None:intergenic | 20.0% |
| !!! | TTAGGATAAGAATAAGATTT+TGG | - | chr7_3:72233230-72233249 | None:intergenic | 20.0% |
| !!! | ATTTATTCTTGTTACTTGTT+AGG | - | chr7_3:72233248-72233267 | None:intergenic | 20.0% |
| !!! | CAAGTAACAAGAATAAATTT+TGG | + | chr7_3:72233250-72233269 | Msa1122030:five_prime_UTR | 20.0% |
| !! | CACAATGTTAGTATATTAAT+AGG | + | chr7_3:72233303-72233322 | Msa1122030:five_prime_UTR | 20.0% |
| !!! | AAATAAATCTAAGAAGTACT+AGG | - | chr7_3:72233411-72233430 | None:intergenic | 20.0% |
| !!! | TTTCTTTTAGTTTTTGATCA+TGG | + | chr7_3:72233429-72233448 | Msa1122030:exon | 20.0% |
| !!! | TTCTTTTAGTTTTTGATCAT+GGG | + | chr7_3:72233430-72233449 | Msa1122030:exon | 20.0% |
| !! | AGACTAATTAGTAAAACTAA+TGG | + | chr7_3:72233526-72233545 | Msa1122030:CDS | 20.0% |
| !! | AAATTAGTAACAACTTTCAA+AGG | - | chr7_3:72233868-72233887 | None:intergenic | 20.0% |
| !! | TAGATTTGAATGTTTGAAAA+TGG | + | chr7_3:72234155-72234174 | Msa1122030:intron | 20.0% |
| !! | TAATTCATTAACCACTAATT+TGG | - | chr7_3:72234194-72234213 | None:intergenic | 20.0% |
| !! | CGATGATTAATGAATATAAT+AGG | - | chr7_3:72234242-72234261 | None:intergenic | 20.0% |
| !!! | AAGATTTTTGGTAACATATT+TGG | - | chr7_3:72234378-72234397 | None:intergenic | 20.0% |
| !! | TATCTAAATATCTTTCTATG+AGG | - | chr7_3:72235163-72235182 | None:intergenic | 20.0% |
| !! | TTCTTTGTAATGATATAATC+AGG | + | chr7_3:72235264-72235283 | Msa1122030:intron | 20.0% |
| !! | ACTCCAAATAATAATACATT+TGG | + | chr7_3:72235947-72235966 | Msa1122030:intron | 20.0% |
| !! | ATTATTATTATATGTCCCTT+TGG | - | chr7_3:72236222-72236241 | None:intergenic | 20.0% |
| ! | GTAGTTGAGTTATCAAAAAT+TGG | + | chr7_3:72233272-72233291 | Msa1122030:five_prime_UTR | 25.0% |
| ! | AAATGTGAATGTAAGTTGTT+AGG | - | chr7_3:72233360-72233379 | None:intergenic | 25.0% |
| !!! | TCTTTTAGTTTTTGATCATG+GGG | + | chr7_3:72233431-72233450 | Msa1122030:exon | 25.0% |
| ! | TCATCTCAGAATCATAATAA+TGG | + | chr7_3:72233475-72233494 | Msa1122030:CDS | 25.0% |
| !!! | GAATCATAATAATGGATTAG+AGG | + | chr7_3:72233483-72233502 | Msa1122030:CDS | 25.0% |
| ! | TTAGACAAAGAGATTATAAC+AGG | - | chr7_3:72234000-72234019 | None:intergenic | 25.0% |
| ! | GTTATAATCTCTTTGTCTAA+AGG | + | chr7_3:72234000-72234019 | Msa1122030:CDS | 25.0% |
| ! | ATTTGAATGTTTGAAAATGG+TGG | + | chr7_3:72234158-72234177 | Msa1122030:intron | 25.0% |
| ! | AATTTGAATGCTATACCAAT+AGG | + | chr7_3:72234329-72234348 | Msa1122030:intron | 25.0% |
| ! | ATTTGAATGCTATACCAATA+GGG | + | chr7_3:72234330-72234349 | Msa1122030:intron | 25.0% |
| !! | AAGAAGAACTTCAAGATTTT+TGG | - | chr7_3:72234390-72234409 | None:intergenic | 25.0% |
| !!! | TAGATTTCTGAAGCAATATT+TGG | - | chr7_3:72234594-72234613 | None:intergenic | 25.0% |
| ! | TTGAAAAATGTCTATGCAAT+TGG | + | chr7_3:72234747-72234766 | Msa1122030:CDS | 25.0% |
| ! | CCTAAGTTTGAATAATAGAA+AGG | - | chr7_3:72235009-72235028 | None:intergenic | 25.0% |
| ! | CCTTTCTATTATTCAAACTT+AGG | + | chr7_3:72235006-72235025 | Msa1122030:intron | 25.0% |
| ! | TAAATGTTAAAGCATGGAAA+TGG | - | chr7_3:72235213-72235232 | None:intergenic | 25.0% |
| ! | AGAAAGTAAATGTTAAAGCA+TGG | - | chr7_3:72235219-72235238 | None:intergenic | 25.0% |
| ! | TGTAATGATATAATCAGGAA+TGG | + | chr7_3:72235269-72235288 | Msa1122030:intron | 25.0% |
| ! | ACTTATGTGACATTGTTAAA+AGG | + | chr7_3:72235423-72235442 | Msa1122030:CDS | 25.0% |
| ! | GTATCTTCAAAATGTCAAAT+AGG | + | chr7_3:72235596-72235615 | Msa1122030:intron | 25.0% |
| ! | TCTACAAAATATTGATATCC+AGG | + | chr7_3:72235805-72235824 | Msa1122030:CDS | 25.0% |
| !! | AACCTATATGCATTTAAGTT+AGG | + | chr7_3:72235863-72235882 | Msa1122030:intron | 25.0% |
| ! | AACCTAACTTAAATGCATAT+AGG | - | chr7_3:72235868-72235887 | None:intergenic | 25.0% |
| ! | TCAAAAGATAGCAAGTTTAA+GGG | - | chr7_3:72235918-72235937 | None:intergenic | 25.0% |
| GTTGAGTTATCAAAAATTGG+AGG | + | chr7_3:72233275-72233294 | Msa1122030:five_prime_UTR | 30.0% | |
| !!! | CTTTTAGTTTTTGATCATGG+GGG | + | chr7_3:72233432-72233451 | Msa1122030:exon | 30.0% |
| !!! | TTTTAGTTTTTGATCATGGG+GGG | + | chr7_3:72233433-72233452 | Msa1122030:exon | 30.0% |
| CCAATACACACAATTCTTAA+TGG | - | chr7_3:72233556-72233575 | None:intergenic | 30.0% | |
| CCATTAAGAATTGTGTGTAT+TGG | + | chr7_3:72233553-72233572 | Msa1122030:CDS | 30.0% | |
| ACAAAGTACAGATCAGAATA+TGG | + | chr7_3:72233638-72233657 | Msa1122030:CDS | 30.0% | |
| !!! | CAAGAGAAGATGTTTTAAGA+AGG | + | chr7_3:72233722-72233741 | Msa1122030:CDS | 30.0% |
| ! | TAATTTGCAAGAAGCTGTTT+GGG | + | chr7_3:72233882-72233901 | Msa1122030:CDS | 30.0% |
| ! | GATGCTGATATTGTTGTTAA+TGG | + | chr7_3:72233904-72233923 | Msa1122030:CDS | 30.0% |
| TCGAAGAGATTAGTAAGTAT+TGG | + | chr7_3:72233956-72233975 | Msa1122030:CDS | 30.0% | |
| !! | AGAGATTAGTAAGTATTGGA+AGG | + | chr7_3:72233960-72233979 | Msa1122030:CDS | 30.0% |
| !! | GCTTGATGAATCATTTTTGT+GGG | - | chr7_3:72234066-72234085 | None:intergenic | 30.0% |
| !! | TGCTTGATGAATCATTTTTG+TGG | - | chr7_3:72234067-72234086 | None:intergenic | 30.0% |
| AGTGGTTAATGAATTAACGT+CGG | + | chr7_3:72234198-72234217 | Msa1122030:intron | 30.0% | |
| AGTATGAAAACGAACACAAT+AGG | - | chr7_3:72234445-72234464 | None:intergenic | 30.0% | |
| AGATAAAGTATGTTCTCCAT+AGG | - | chr7_3:72234564-72234583 | None:intergenic | 30.0% | |
| ATGGAGAACATACTTTATCT+TGG | + | chr7_3:72234564-72234583 | Msa1122030:CDS | 30.0% | |
| TGTCTAAGAAACTTTGCTAA+AGG | - | chr7_3:72234669-72234688 | None:intergenic | 30.0% | |
| ACAACCACATTTCATTGTAT+GGG | + | chr7_3:72234686-72234705 | Msa1122030:CDS | 30.0% | |
| TCTCTATTTACGATTAGAAC+TGG | - | chr7_3:72234919-72234938 | None:intergenic | 30.0% | |
| ATATCATTACAAAGAAGAGC+AGG | - | chr7_3:72235260-72235279 | None:intergenic | 30.0% | |
| ACATAAGTATCAGCTAGTAA+TGG | - | chr7_3:72235411-72235430 | None:intergenic | 30.0% | |
| ! | ACATGTCGATTATCTTTACT+AGG | + | chr7_3:72235665-72235684 | Msa1122030:intron | 30.0% |
| ! | CATGTCGATTATCTTTACTA+GGG | + | chr7_3:72235666-72235685 | Msa1122030:intron | 30.0% |
| !! | ATATTTTGTAGAGTGTCTTC+AGG | - | chr7_3:72235797-72235816 | None:intergenic | 30.0% |
| TTGTTATGAGAATGATTACC+TGG | - | chr7_3:72235826-72235845 | None:intergenic | 30.0% | |
| CTCAAAAGATAGCAAGTTTA+AGG | - | chr7_3:72235919-72235938 | None:intergenic | 30.0% | |
| ! | TGGTGTATGTTTGATTTCTT+AGG | + | chr7_3:72236018-72236037 | Msa1122030:intron | 30.0% |
| ! | GGTGTATGTTTGATTTCTTA+GGG | + | chr7_3:72236019-72236038 | Msa1122030:intron | 30.0% |
| ! | ATGCTATTCTAAAAGCTTTG+AGG | + | chr7_3:72236054-72236073 | Msa1122030:CDS | 30.0% |
| ! | TGCTATTCTAAAAGCTTTGA+GGG | + | chr7_3:72236055-72236074 | Msa1122030:CDS | 30.0% |
| ! | CAACAGTGATTATTTTCACT+TGG | + | chr7_3:72236155-72236174 | Msa1122030:exon | 30.0% |
| TGGCTATTGTTTCCTATATA+TGG | - | chr7_3:72236202-72236221 | None:intergenic | 30.0% | |
| ATATAGGAAACAATAGCCAA+AGG | + | chr7_3:72236203-72236222 | Msa1122030:three_prime_UTR | 30.0% | |
| TATAGGAAACAATAGCCAAA+GGG | + | chr7_3:72236204-72236223 | Msa1122030:three_prime_UTR | 30.0% | |
| TTTCCAAAAACACTACATTG+TGG | + | chr7_3:72236334-72236353 | Msa1122030:three_prime_UTR | 30.0% | |
| !!! | AAGAAGTGTTACTCCAATTT+TGG | - | chr7_3:72236360-72236379 | None:intergenic | 30.0% |
| AATATAGTATGCAGCAGCAT+TGG | - | chr7_3:72233201-72233220 | None:intergenic | 35.0% | |
| TCAAGATTTCATCCCTTGTT+TGG | + | chr7_3:72233380-72233399 | Msa1122030:five_prime_UTR | 35.0% | |
| TACTAGGAAGAACCAAACAA+GGG | - | chr7_3:72233395-72233414 | None:intergenic | 35.0% | |
| ! | GCACTTTTACAAGACAGTTA+TGG | + | chr7_3:72233604-72233623 | Msa1122030:CDS | 35.0% |
| AAATATGTCGAAGCAAGACT+TGG | + | chr7_3:72233769-72233788 | Msa1122030:CDS | 35.0% | |
| GCTGATGAGATTCTTAAAGA+TGG | + | chr7_3:72233808-72233827 | Msa1122030:CDS | 35.0% | |
| ACAACTTTCAAAGGACAAAC+TGG | - | chr7_3:72233859-72233878 | None:intergenic | 35.0% | |
| ! | CTAATTTGCAAGAAGCTGTT+TGG | + | chr7_3:72233881-72233900 | Msa1122030:CDS | 35.0% |
| TTCGAAAATCTCACGAGTTT+CGG | - | chr7_3:72233941-72233960 | None:intergenic | 35.0% | |
| !! | TAAAGGTATTGAAGCTGCAT+TGG | + | chr7_3:72234017-72234036 | Msa1122030:CDS | 35.0% |
| TTTGTGGGAGTTACAATATG+AGG | - | chr7_3:72234051-72234070 | None:intergenic | 35.0% | |
| GCAAAGGCAAACAACAATAT+AGG | - | chr7_3:72234121-72234140 | None:intergenic | 35.0% | |
| !! | TATTGTTGTTTGCCTTTGCA+AGG | + | chr7_3:72234122-72234141 | Msa1122030:intron | 35.0% |
| TACTTGTTCAATCCTTGCAA+AGG | - | chr7_3:72234137-72234156 | None:intergenic | 35.0% | |
| GTTAGTCACATCCAAATTAG+TGG | + | chr7_3:72234180-72234199 | Msa1122030:intron | 35.0% | |
| ATGCAAAGAGTGAAGAATGA+GGG | - | chr7_3:72234519-72234538 | None:intergenic | 35.0% | |
| AATGCAAAGAGTGAAGAATG+AGG | - | chr7_3:72234520-72234539 | None:intergenic | 35.0% | |
| GAGAACATACTTTATCTTGG+TGG | + | chr7_3:72234567-72234586 | Msa1122030:CDS | 35.0% | |
| TGCTTCAGAAATCTACAACA+AGG | + | chr7_3:72234599-72234618 | Msa1122030:CDS | 35.0% | |
| TATGCCAATGCTAGAATTTG+TGG | + | chr7_3:72234624-72234643 | Msa1122030:CDS | 35.0% | |
| GACAACCACATTTCATTGTA+TGG | + | chr7_3:72234685-72234704 | Msa1122030:CDS | 35.0% | |
| TTGTCCCATACAATGAAATG+TGG | - | chr7_3:72234693-72234712 | None:intergenic | 35.0% | |
| ! | ACTGCTCTAACATTTTTGCA+GGG | - | chr7_3:72234893-72234912 | None:intergenic | 35.0% |
| ! | TACTGCTCTAACATTTTTGC+AGG | - | chr7_3:72234894-72234913 | None:intergenic | 35.0% |
| GGAGACAGTTTAACGATAAA+AGG | - | chr7_3:72235079-72235098 | None:intergenic | 35.0% | |
| TACGGTCAAATGTTAGCTAA+GGG | + | chr7_3:72235459-72235478 | Msa1122030:CDS | 35.0% | |
| GCAATACATTTAGGCTTGAT+TGG | - | chr7_3:72235728-72235747 | None:intergenic | 35.0% | |
| CTTCAGGATGCAATACATTT+AGG | - | chr7_3:72235737-72235756 | None:intergenic | 35.0% | |
| !!! | GCAACATGCTTTTTTTCTTC+AGG | - | chr7_3:72235753-72235772 | None:intergenic | 35.0% |
| AAATAAGTTTCCCATGCTTC+TGG | + | chr7_3:72235998-72236017 | Msa1122030:intron | 35.0% | |
| GTACTAGGAAGAACCAAACA+AGG | - | chr7_3:72233396-72233415 | None:intergenic | 40.0% | |
| !!! | ATCATGGGGGGAAGTATTTT+GGG | + | chr7_3:72233445-72233464 | Msa1122030:exon | 40.0% |
| AGAATTGTGTGTATTGGAGC+AGG | + | chr7_3:72233559-72233578 | Msa1122030:CDS | 40.0% | |
| ATCAGAATATGGAGAAGAGC+AGG | + | chr7_3:72233649-72233668 | Msa1122030:CDS | 40.0% | |
| GGAGTTACAATATGAGGAAC+AGG | - | chr7_3:72234045-72234064 | None:intergenic | 40.0% | |
| GGTTAATGAATTAACGTCGG+TGG | + | chr7_3:72234201-72234220 | Msa1122030:intron | 40.0% | |
| ! | CTTTCGCGACAACTTTTAAG+TGG | - | chr7_3:72234302-72234321 | None:intergenic | 40.0% |
| TCAGATATCAGTTGCCCTAT+TGG | - | chr7_3:72234347-72234366 | None:intergenic | 40.0% | |
| AGTGAAGAATGAGGGATGAA+AGG | - | chr7_3:72234511-72234530 | None:intergenic | 40.0% | |
| AGCTCCACAAATTCTAGCAT+TGG | - | chr7_3:72234631-72234650 | None:intergenic | 40.0% | |
| GAATTTGTGGAGCTGAGAAA+TGG | + | chr7_3:72234637-72234656 | Msa1122030:CDS | 40.0% | |
| AATGTCTATGCAATTGGAGC+TGG | + | chr7_3:72234753-72234772 | Msa1122030:CDS | 40.0% | |
| ! | CTGCTCTAACATTTTTGCAG+GGG | - | chr7_3:72234892-72234911 | None:intergenic | 40.0% |
| GTTTAGCCTAGTAGTCTCAA+GGG | - | chr7_3:72235121-72235140 | None:intergenic | 40.0% | |
| AGTTTAGCCTAGTAGTCTCA+AGG | - | chr7_3:72235122-72235141 | None:intergenic | 40.0% | |
| AGTAGCACTCTCATTGGTAA+GGG | - | chr7_3:72235301-72235320 | None:intergenic | 40.0% | |
| TAGTAGCACTCTCATTGGTA+AGG | - | chr7_3:72235302-72235321 | None:intergenic | 40.0% | |
| TTTGCTAGTAGCACTCTCAT+TGG | - | chr7_3:72235307-72235326 | None:intergenic | 40.0% | |
| GTACGGTCAAATGTTAGCTA+AGG | + | chr7_3:72235458-72235477 | Msa1122030:CDS | 40.0% | |
| ! | TGTAGAGTGTCTTCAGGATA+GGG | - | chr7_3:72235791-72235810 | None:intergenic | 40.0% |
| ! | TTGTAGAGTGTCTTCAGGAT+AGG | - | chr7_3:72235792-72235811 | None:intergenic | 40.0% |
| ! | CAAACATACACCAGAAGCAT+GGG | - | chr7_3:72236011-72236030 | None:intergenic | 40.0% |
| TCAAACATACACCAGAAGCA+TGG | - | chr7_3:72236012-72236031 | None:intergenic | 40.0% | |
| CACAAAGTCATGCTTTCTAC+AGG | + | chr7_3:72236117-72236136 | Msa1122030:CDS | 40.0% | |
| TCACTTGGCAAAAACAAGTG+TGG | + | chr7_3:72236170-72236189 | Msa1122030:three_prime_UTR | 40.0% | |
| TTGGCAAAAACAAGTGTGGA+TGG | + | chr7_3:72236174-72236193 | Msa1122030:three_prime_UTR | 40.0% | |
| GTGTGGATGGAACCATATAT+AGG | + | chr7_3:72236187-72236206 | Msa1122030:three_prime_UTR | 40.0% | |
| ! | TGGCCACAATGTAGTGTTTT+TGG | - | chr7_3:72236340-72236359 | None:intergenic | 40.0% |
| CACTACATTGTGGCCAAAAT+TGG | + | chr7_3:72236344-72236363 | Msa1122030:three_prime_UTR | 40.0% | |
| ! | TATGCAGCAGCATTGGAATG+TGG | - | chr7_3:72233194-72233213 | None:intergenic | 45.0% |
| !!! | GATCATGGGGGGAAGTATTT+TGG | + | chr7_3:72233444-72233463 | Msa1122030:exon | 45.0% |
| !!! | GGGGGAAGTATTTTGGGAAA+TGG | + | chr7_3:72233451-72233470 | Msa1122030:CDS | 45.0% |
| !! | TCGAAGCAAGACTTGGTGAT+AGG | + | chr7_3:72233776-72233795 | Msa1122030:CDS | 45.0% |
| ATCTCACGAGTTTCGGTTGA+AGG | - | chr7_3:72233934-72233953 | None:intergenic | 45.0% | |
| TGCATTGCAAATTCGACAGC+TGG | + | chr7_3:72234534-72234553 | Msa1122030:intron | 45.0% | |
| TTTGTGGAGCTGAGAAATGG+AGG | + | chr7_3:72234640-72234659 | Msa1122030:CDS | 45.0% | |
| TAGTGACCTTGTCACACATG+AGG | + | chr7_3:72234713-72234732 | Msa1122030:CDS | 45.0% | |
| CTTGTCACACATGAGGTCAT+GGG | + | chr7_3:72234720-72234739 | Msa1122030:CDS | 45.0% | |
| AAGGAAAAATCGCTCGAGCA+GGG | - | chr7_3:72235060-72235079 | None:intergenic | 45.0% | |
| AAAGGAAAAATCGCTCGAGC+AGG | - | chr7_3:72235061-72235080 | None:intergenic | 45.0% | |
| TCGTTAAACTGTCTCCGTTG+AGG | + | chr7_3:72235083-72235102 | Msa1122030:intron | 45.0% | |
| ! | GGACAGAGTTCTAACCTCAA+CGG | - | chr7_3:72235100-72235119 | None:intergenic | 45.0% |
| TCTCAGGCTCTTCAGTTAAC+AGG | - | chr7_3:72235377-72235396 | None:intergenic | 45.0% | |
| AATGGTCCAGCAAGTTTCTC+AGG | - | chr7_3:72235393-72235412 | None:intergenic | 45.0% | |
| TGTTAAAAGGTCGTAACGCG+TGG | + | chr7_3:72235436-72235455 | Msa1122030:CDS | 45.0% | |
| TAATGCTGTCACCCATGTCA+GGG | - | chr7_3:72235494-72235513 | None:intergenic | 45.0% | |
| TAGCGGCAAAGGAATGATTC+AGG | + | chr7_3:72235512-72235531 | Msa1122030:CDS | 45.0% | |
| AGGATAGGGCAAAGTTCAAC+AGG | - | chr7_3:72235777-72235796 | None:intergenic | 45.0% | |
| TTCTACAGGCCTTCACTTCT+TGG | + | chr7_3:72236131-72236150 | Msa1122030:CDS | 45.0% | |
| CACTGTTGTCCAAGAAGTGA+AGG | - | chr7_3:72236143-72236162 | None:intergenic | 45.0% | |
| TGTGTATTGGAGCAGGTGCT+TGG | + | chr7_3:72233566-72233585 | Msa1122030:CDS | 50.0% | |
| GTGTATTGGAGCAGGTGCTT+GGG | + | chr7_3:72233567-72233586 | Msa1122030:CDS | 50.0% | |
| TGTATTGGAGCAGGTGCTTG+GGG | + | chr7_3:72233568-72233587 | Msa1122030:CDS | 50.0% | |
| CCATGACCTCATGTGTGACA+AGG | - | chr7_3:72234722-72234741 | None:intergenic | 50.0% | |
| CCTTGTCACACATGAGGTCA+TGG | + | chr7_3:72234719-72234738 | Msa1122030:CDS | 50.0% | |
| CAGGGGAGTGAATGAACATG+TGG | - | chr7_3:72234875-72234894 | None:intergenic | 50.0% | |
| !! | CAGTCGATTTTGCCTGTCTC+AGG | + | chr7_3:72234964-72234983 | Msa1122030:intron | 50.0% |
| CTCTGTCCCTTGAGACTACT+AGG | + | chr7_3:72235112-72235131 | Msa1122030:intron | 50.0% | |
| GAAGAGCCTGAGAAACTTGC+TGG | + | chr7_3:72235384-72235403 | Msa1122030:CDS | 50.0% | |
| AAAGGTCGTAACGCGTGGTA+CGG | + | chr7_3:72235441-72235460 | Msa1122030:CDS | 50.0% | |
| GGTGAACTAAGCCCTGACAT+GGG | + | chr7_3:72235480-72235499 | Msa1122030:CDS | 50.0% | |
| CTAATGCTGTCACCCATGTC+AGG | - | chr7_3:72235495-72235514 | None:intergenic | 50.0% | |
| GACATGGGTGACAGCATTAG+CGG | + | chr7_3:72235495-72235514 | Msa1122030:CDS | 50.0% | |
| !! | TTACTAGGGAGTGTCTGCAG+TGG | + | chr7_3:72235680-72235699 | Msa1122030:intron | 50.0% |
| GCAATTGCAATGCGTTCTCG+TGG | - | chr7_3:72236098-72236117 | None:intergenic | 50.0% | |
| GTATTGGAGCAGGTGCTTGG+GGG | + | chr7_3:72233569-72233588 | Msa1122030:CDS | 55.0% | |
| ! | TTCGACAGCTGGAGTGCCTA+TGG | + | chr7_3:72234545-72234564 | Msa1122030:intron | 55.0% |
| GTCACACATGAGGTCATGGG+TGG | + | chr7_3:72234723-72234742 | Msa1122030:CDS | 55.0% | |
| GGGTGAACTAAGCCCTGACA+TGG | + | chr7_3:72235479-72235498 | Msa1122030:CDS | 55.0% | |
| GGTGACAGCATTAGCGGCAA+AGG | + | chr7_3:72235501-72235520 | Msa1122030:CDS | 55.0% | |
| GCCTGTCTCAGGCTACAGTG+CGG | + | chr7_3:72234975-72234994 | Msa1122030:intron | 60.0% | |
| !! | CTAGGGAGTGTCTGCAGTGG+AGG | + | chr7_3:72235683-72235702 | Msa1122030:intron | 60.0% |
| GCCGCACTGTAGCCTGAGAC+AGG | - | chr7_3:72234979-72234998 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 72233181 | 72236411 | 72233181 | ID=Msa1122030;Name=Msa1122030 |
| chr7_3 | mRNA | 72233181 | 72236411 | 72233181 | ID=Msa1122030-mRNA-1;Parent=Msa1122030;Name=Msa1122030-mRNA-1;_AED=0.12;_eAED=0.12;_QI=267|1|1|1|1|1|5|248|457 |
| chr7_3 | exon | 72233181 | 72234087 | 72233181 | ID=Msa1122030-mRNA-1:exon:18710;Parent=Msa1122030-mRNA-1 |
| chr7_3 | exon | 72234553 | 72234774 | 72234553 | ID=Msa1122030-mRNA-1:exon:18711;Parent=Msa1122030-mRNA-1 |
| chr7_3 | exon | 72235286 | 72235533 | 72235286 | ID=Msa1122030-mRNA-1:exon:18712;Parent=Msa1122030-mRNA-1 |
| chr7_3 | exon | 72235687 | 72235826 | 72235687 | ID=Msa1122030-mRNA-1:exon:18713;Parent=Msa1122030-mRNA-1 |
| chr7_3 | exon | 72236040 | 72236411 | 72236040 | ID=Msa1122030-mRNA-1:exon:18714;Parent=Msa1122030-mRNA-1 |
| chr7_3 | five_prime_UTR | 72233181 | 72233447 | 72233181 | ID=Msa1122030-mRNA-1:five_prime_utr;Parent=Msa1122030-mRNA-1 |
| chr7_3 | CDS | 72233448 | 72234087 | 72233448 | ID=Msa1122030-mRNA-1:cds;Parent=Msa1122030-mRNA-1 |
| chr7_3 | CDS | 72234553 | 72234774 | 72234553 | ID=Msa1122030-mRNA-1:cds;Parent=Msa1122030-mRNA-1 |
| chr7_3 | CDS | 72235286 | 72235533 | 72235286 | ID=Msa1122030-mRNA-1:cds;Parent=Msa1122030-mRNA-1 |
| chr7_3 | CDS | 72235687 | 72235826 | 72235687 | ID=Msa1122030-mRNA-1:cds;Parent=Msa1122030-mRNA-1 |
| chr7_3 | CDS | 72236040 | 72236163 | 72236040 | ID=Msa1122030-mRNA-1:cds;Parent=Msa1122030-mRNA-1 |
| chr7_3 | three_prime_UTR | 72236164 | 72236411 | 72236164 | ID=Msa1122030-mRNA-1:three_prime_utr;Parent=Msa1122030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
